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Overview

ID MAG00979
Name DYD3_bin.57
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family SG8-41
Genus SG8-41
Species
Assembly information
Completeness (%) 91.41
Contamination (%) 5.11
GC content (%) 65.0
N50 (bp) 24,449
Genome size (bp) 3,658,362

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3476

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_100799_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1074.0
DYD3_k127_100799_1 Uncharacterized protein family (UPF0051) K09014 - - 9.397e-237 739.0
DYD3_k127_100799_10 ABC transporter K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 405.0
DYD3_k127_100799_11 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 390.0
DYD3_k127_100799_12 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 346.0
DYD3_k127_100799_13 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 353.0
DYD3_k127_100799_14 membrane-bound metal-dependent K07038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 340.0
DYD3_k127_100799_15 Peptidase M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 314.0
DYD3_k127_100799_16 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 304.0
DYD3_k127_100799_17 Bacterial lipid A biosynthesis acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 302.0
DYD3_k127_100799_18 Scaffold protein Nfu/NifU N terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001449 278.0
DYD3_k127_100799_19 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000222 281.0
DYD3_k127_100799_2 MMPL family - - - 2.172e-219 712.0
DYD3_k127_100799_20 Beta-ketoacyl synthase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001617 278.0
DYD3_k127_100799_21 pteridine-dependent deoxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007878 267.0
DYD3_k127_100799_22 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001098 252.0
DYD3_k127_100799_23 Glycosyl Transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009108 252.0
DYD3_k127_100799_24 NifU-like N terminal domain K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000007298 239.0
DYD3_k127_100799_25 Transcriptional regulator K13643 - - 0.0000000000000000000000000000000000000000000000000000000000000003227 223.0
DYD3_k127_100799_26 - - - - 0.00000000000000000000000000000000000000000000000000000000000003709 226.0
DYD3_k127_100799_27 alpha/beta hydrolase fold K01253 - 3.3.2.9 0.00000000000000000000000000000000000000000000000000000000241 222.0
DYD3_k127_100799_28 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K00571 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000001329 197.0
DYD3_k127_100799_29 Belongs to the UPF0255 family - - - 0.0000000000000000000000000000000000000000000000000002228 201.0
DYD3_k127_100799_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 3.652e-202 640.0
DYD3_k127_100799_30 - - - - 0.000000000000000000000000000000000000000000000000000646 200.0
DYD3_k127_100799_31 Electron transfer DM13 - - - 0.000000000000000000000000000000000000000000000001168 179.0
DYD3_k127_100799_32 Rieske-like [2Fe-2S] domain K05710,K18087 - - 0.0000000000000000000000000000000000000000000006848 167.0
DYD3_k127_100799_33 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000003547 163.0
DYD3_k127_100799_34 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000000003771 167.0
DYD3_k127_100799_35 dehydratase - - - 0.0000000000000000000000000000000000000005166 154.0
DYD3_k127_100799_36 - - - - 0.000000000000000000000000000000008808 135.0
DYD3_k127_100799_37 membrane - - - 0.000000000000000000000000000005462 127.0
DYD3_k127_100799_38 Phosphopantetheine attachment site K02078 - - 0.00000000000000000000000001573 113.0
DYD3_k127_100799_39 cytochrome - - - 0.00000000000000002543 91.0
DYD3_k127_100799_4 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 595.0
DYD3_k127_100799_40 FabA-like domain - - - 0.0000000000001091 79.0
DYD3_k127_100799_41 - - - - 0.0000000000005553 73.0
DYD3_k127_100799_42 Anaphase promoting complex subunit 8 / Cdc23 K03355 - - 0.000008511 56.0
DYD3_k127_100799_5 fad dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005748 539.0
DYD3_k127_100799_6 Beta-ketoacyl synthase, C-terminal domain K00647,K09458 - 2.3.1.179,2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007321 511.0
DYD3_k127_100799_7 AMP-binding enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 472.0
DYD3_k127_100799_8 PFAM Aminotransferase, class V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 468.0
DYD3_k127_100799_9 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 466.0
DYD3_k127_1042049_0 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 599.0
DYD3_k127_1042049_1 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 441.0
DYD3_k127_1042049_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 380.0
DYD3_k127_1042049_3 mandelate racemase muconate lactonizing K01856,K02549 - 4.2.1.113,5.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007172 355.0
DYD3_k127_1042049_4 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 314.0
DYD3_k127_1042049_5 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003788 298.0
DYD3_k127_1042049_6 Phosphoenolpyruvate phosphomutase K20454 - 4.1.3.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004546 282.0
DYD3_k127_1042049_7 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000001373 139.0
DYD3_k127_1042049_8 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000585 72.0
DYD3_k127_107804_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1749.0
DYD3_k127_107804_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0 1068.0
DYD3_k127_107804_10 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005565 496.0
DYD3_k127_107804_11 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 477.0
DYD3_k127_107804_12 Phosphate transport system permease protein K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 466.0
DYD3_k127_107804_13 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 462.0
DYD3_k127_107804_14 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 457.0
DYD3_k127_107804_15 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 422.0
DYD3_k127_107804_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000428 397.0
DYD3_k127_107804_17 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 362.0
DYD3_k127_107804_18 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 357.0
DYD3_k127_107804_19 dihydropteroate synthase K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 336.0
DYD3_k127_107804_2 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 1.715e-318 993.0
DYD3_k127_107804_20 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 318.0
DYD3_k127_107804_21 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004871 315.0
DYD3_k127_107804_22 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 297.0
DYD3_k127_107804_23 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002161 261.0
DYD3_k127_107804_24 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000001338 244.0
DYD3_k127_107804_25 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000008789 247.0
DYD3_k127_107804_26 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000000000007772 233.0
DYD3_k127_107804_27 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000000000000000000000000000001306 224.0
DYD3_k127_107804_28 - - - - 0.0000000000000000000000000000000000000000000000000000000144 204.0
DYD3_k127_107804_29 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000001083 194.0
DYD3_k127_107804_3 Heat shock 70 kDa protein K04043 - - 8.103e-299 927.0
DYD3_k127_107804_30 Uncharacterized conserved protein (DUF2249) - - - 0.0000000000000000000000000000000000000000008163 165.0
DYD3_k127_107804_31 myo-inosose-2 dehydratase activity K00457,K06606 - 1.13.11.27,5.3.99.11 0.0000000000000000000000000000000000001016 147.0
DYD3_k127_107804_32 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000000202 124.0
DYD3_k127_107804_33 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.0000000000000000000000000328 118.0
DYD3_k127_107804_34 RNA-binding protein containing KH domain possibly ribosomal protein - - - 0.0000000000000000000000001161 115.0
DYD3_k127_107804_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 3.976e-248 769.0
DYD3_k127_107804_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 5.523e-229 717.0
DYD3_k127_107804_6 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008784 600.0
DYD3_k127_107804_7 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 589.0
DYD3_k127_107804_8 TIGRFAM carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 571.0
DYD3_k127_107804_9 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 493.0
DYD3_k127_1120935_0 Methionine synthase K00548 - 2.1.1.13 0.0 1785.0
DYD3_k127_1120935_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 1.906e-259 812.0
DYD3_k127_1120935_10 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 594.0
DYD3_k127_1120935_11 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 440.0
DYD3_k127_1120935_12 COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 447.0
DYD3_k127_1120935_13 Major facilitator superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009622 383.0
DYD3_k127_1120935_14 drug resistance transporter K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 382.0
DYD3_k127_1120935_15 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 371.0
DYD3_k127_1120935_16 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 348.0
DYD3_k127_1120935_17 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 319.0
DYD3_k127_1120935_18 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 309.0
DYD3_k127_1120935_19 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006155 308.0
DYD3_k127_1120935_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.576e-241 766.0
DYD3_k127_1120935_20 PFAM Methionine biosynthesis MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 293.0
DYD3_k127_1120935_21 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006853 288.0
DYD3_k127_1120935_22 C-type monoheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fixation K17222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001652 282.0
DYD3_k127_1120935_23 TIGRFAM TonB family protein K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001058 283.0
DYD3_k127_1120935_24 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008955,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0042546,GO:0043164,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003994 280.0
DYD3_k127_1120935_25 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000007469 250.0
DYD3_k127_1120935_26 esterase K07000 - - 0.00000000000000000000000000000000000000000000000000000000000001526 221.0
DYD3_k127_1120935_27 rhodanese-related sulfurtransferase - - - 0.0000000000000000000000000000000000000000000000000000000000005838 212.0
DYD3_k127_1120935_28 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.000000000000000000000000000000000000000000000000000000000001471 215.0
DYD3_k127_1120935_29 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000000000000002778 201.0
DYD3_k127_1120935_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 6.296e-231 728.0
DYD3_k127_1120935_30 CAAX amino Terminal protease family protein K07052 - - 0.00000000000000000000000000000000000000000000000000000285 201.0
DYD3_k127_1120935_31 - - - - 0.0000000000000000000000000000000000000000000000000004135 191.0
DYD3_k127_1120935_32 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.00000000000000000000000000000000000000000000000004366 181.0
DYD3_k127_1120935_33 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000000000000000000000000000001105 160.0
DYD3_k127_1120935_34 Sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000002256 151.0
DYD3_k127_1120935_35 Cytochrome c K17223 - - 0.0000000000000000000000000000000000007773 152.0
DYD3_k127_1120935_36 Phosphotransferase System K11189 - - 0.0000000000000000000000000000009096 123.0
DYD3_k127_1120935_37 Sulphur oxidation protein SoxZ K17227 - - 0.00000000000000000000000002597 111.0
DYD3_k127_1120935_38 Psort location Cytoplasmic, score 8.96 K09806 - - 0.00000000000000000003218 94.0
DYD3_k127_1120935_39 - - - - 0.000000000000000004034 91.0
DYD3_k127_1120935_4 ribonuclease II K01147 - 3.1.13.1 4.936e-222 704.0
DYD3_k127_1120935_5 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 2.099e-220 693.0
DYD3_k127_1120935_6 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 2.321e-201 636.0
DYD3_k127_1120935_7 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 1.454e-200 634.0
DYD3_k127_1120935_8 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 2.14e-199 628.0
DYD3_k127_1120935_9 Ammonium Transporter K03320 - - 2.073e-198 630.0
DYD3_k127_11380_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1256.0
DYD3_k127_11380_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 3.757e-231 720.0
DYD3_k127_11380_2 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 486.0
DYD3_k127_11380_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 346.0
DYD3_k127_11380_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 285.0
DYD3_k127_11380_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000001312 235.0
DYD3_k127_11380_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000001436 128.0
DYD3_k127_11380_7 - - - - 0.000000000000000005537 86.0
DYD3_k127_1142037_0 Tripartite tricarboxylate transporter TctA family K07793 - - 4.058e-208 659.0
DYD3_k127_1142037_1 Belongs to the UbiD family K03182,K16874 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 384.0
DYD3_k127_1142037_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 316.0
DYD3_k127_1142037_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000396 178.0
DYD3_k127_1142037_4 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000001432 115.0
DYD3_k127_1214543_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2392.0
DYD3_k127_1214543_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2286.0
DYD3_k127_1214543_10 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000000000000000000000000000000004486 139.0
DYD3_k127_1214543_11 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000952 76.0
DYD3_k127_1214543_12 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00003292 49.0
DYD3_k127_1214543_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1175.0
DYD3_k127_1214543_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 328.0
DYD3_k127_1214543_4 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 337.0
DYD3_k127_1214543_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002831 253.0
DYD3_k127_1214543_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001706 248.0
DYD3_k127_1214543_7 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001138 248.0
DYD3_k127_1214543_8 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000004496 221.0
DYD3_k127_1214543_9 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000002203 181.0
DYD3_k127_1223755_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K22015 - 1.17.1.9,1.17.99.7 0.0 1437.0
DYD3_k127_1223755_1 Belongs to the TPP enzyme family K01577 - 4.1.1.8 2.806e-321 989.0
DYD3_k127_1223755_10 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01684 - 4.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 505.0
DYD3_k127_1223755_11 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003807 501.0
DYD3_k127_1223755_12 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5,6.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 494.0
DYD3_k127_1223755_13 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 457.0
DYD3_k127_1223755_14 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 446.0
DYD3_k127_1223755_15 SMART beta-lactamase domain protein K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 371.0
DYD3_k127_1223755_16 Protein of unknown function (DUF3500) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008793 359.0
DYD3_k127_1223755_17 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005723 332.0
DYD3_k127_1223755_18 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009519 318.0
DYD3_k127_1223755_19 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 325.0
DYD3_k127_1223755_2 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 3.903e-295 912.0
DYD3_k127_1223755_20 Capsule synthesis protein K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002008 308.0
DYD3_k127_1223755_21 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008597 284.0
DYD3_k127_1223755_22 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001651 279.0
DYD3_k127_1223755_23 (FHA) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003973 274.0
DYD3_k127_1223755_24 ABC-type nitrate sulfonate bicarbonate transport system, permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000001948 231.0
DYD3_k127_1223755_25 PFAM sodium calcium exchanger membrane region K07301 - - 0.00000000000000000000000000000000000000000002024 174.0
DYD3_k127_1223755_26 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000001637 168.0
DYD3_k127_1223755_27 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000000000003078 160.0
DYD3_k127_1223755_28 universal stress protein - - - 0.00000000000000000000000000000000000000006105 155.0
DYD3_k127_1223755_29 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000007902 147.0
DYD3_k127_1223755_3 24 kD subunit K00122 - 1.17.1.9 1.895e-269 839.0
DYD3_k127_1223755_30 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.0000441 51.0
DYD3_k127_1223755_4 Tripartite tricarboxylate transporter TctA family K07793 - - 3.34e-261 812.0
DYD3_k127_1223755_5 CHASE2 K01768 - 4.6.1.1 2.527e-254 804.0
DYD3_k127_1223755_6 Protein conserved in bacteria K07793 - - 6.697e-227 711.0
DYD3_k127_1223755_7 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 4.48e-204 646.0
DYD3_k127_1223755_8 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 598.0
DYD3_k127_1223755_9 CoA-transferase family III K07749,K14471,K14472 - 2.8.3.16,2.8.3.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 581.0
DYD3_k127_1331901_0 TonB dependent receptor K02014 - - 3.644e-228 727.0
DYD3_k127_1331901_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 2.726e-222 707.0
DYD3_k127_1331901_2 Amidohydrolase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 322.0
DYD3_k127_1331901_3 EVE domain - - - 0.000000000000000000000000000000000000000000000000000001369 196.0
DYD3_k127_1331901_4 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000000000002507 146.0
DYD3_k127_1331901_5 Isochorismatase family - - - 0.000000000000000000000656 104.0
DYD3_k127_1331901_6 - - - - 0.00000000000000003059 83.0
DYD3_k127_1342908_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K16898 - 3.6.4.12 0.0 1075.0
DYD3_k127_1342908_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 2.477e-239 770.0
DYD3_k127_1342908_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 421.0
DYD3_k127_1342908_3 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 318.0
DYD3_k127_1342908_4 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000000000001303 210.0
DYD3_k127_1342908_5 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000000008184 194.0
DYD3_k127_1354860_0 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 1.845e-236 751.0
DYD3_k127_1354860_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K00256 - 1.3.99.16 1.023e-223 713.0
DYD3_k127_1354860_10 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000002596 204.0
DYD3_k127_1354860_11 FCD - - - 0.0000000000000000000000000000000000000000000000000000002026 204.0
DYD3_k127_1354860_12 Class I peptide chain release factor K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.00000000000000000000000000000000000000000000003164 173.0
DYD3_k127_1354860_13 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000000000001725 173.0
DYD3_k127_1354860_14 Dodecin K09165 - - 0.000000000000000000004285 106.0
DYD3_k127_1354860_15 Catalyzes the transfer of electrons from NADH to quinone K00342 - 1.6.5.3 0.000000000000000005424 84.0
DYD3_k127_1354860_16 Protein of unknown function (DUF465) - - - 0.0000000000002929 73.0
DYD3_k127_1354860_17 COG3909 Cytochrome c556 - - - 0.0000000001133 68.0
DYD3_k127_1354860_18 - - - - 0.00003832 54.0
DYD3_k127_1354860_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 6.283e-197 624.0
DYD3_k127_1354860_3 Threonine dehydratase K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 406.0
DYD3_k127_1354860_4 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 362.0
DYD3_k127_1354860_5 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 292.0
DYD3_k127_1354860_6 Enoyl-CoA hydratase K13816 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000235 263.0
DYD3_k127_1354860_7 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000000000000000000000000000000000001682 258.0
DYD3_k127_1354860_8 MarC family integral membrane protein K05595 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000006325 216.0
DYD3_k127_1354860_9 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000002875 216.0
DYD3_k127_1400003_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 9.815e-241 756.0
DYD3_k127_1400003_1 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007013 608.0
DYD3_k127_1400003_10 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 463.0
DYD3_k127_1400003_11 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 416.0
DYD3_k127_1400003_12 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 413.0
DYD3_k127_1400003_13 Amidohydrolase K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000809 345.0
DYD3_k127_1400003_14 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007227 312.0
DYD3_k127_1400003_15 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 309.0
DYD3_k127_1400003_16 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 307.0
DYD3_k127_1400003_17 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 308.0
DYD3_k127_1400003_18 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 297.0
DYD3_k127_1400003_19 Class II Aldolase and Adducin N-terminal domain K22130 - 4.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 287.0
DYD3_k127_1400003_2 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 594.0
DYD3_k127_1400003_20 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 293.0
DYD3_k127_1400003_21 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 291.0
DYD3_k127_1400003_22 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 291.0
DYD3_k127_1400003_23 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 289.0
DYD3_k127_1400003_24 Serine hydrolase (FSH1) K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006107 280.0
DYD3_k127_1400003_25 Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate K01003 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004546 282.0
DYD3_k127_1400003_26 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000002977 231.0
DYD3_k127_1400003_27 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000002635 228.0
DYD3_k127_1400003_28 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000001088 210.0
DYD3_k127_1400003_29 Asp Glu hydantoin racemase - - - 0.000000000000000000000000000000000000000000000000000002015 200.0
DYD3_k127_1400003_3 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 584.0
DYD3_k127_1400003_30 - - - - 0.000000000000000000000000000000000000000034 174.0
DYD3_k127_1400003_31 Protein of unknown function (DUF615) K09889 - - 0.000000000000000000000000000000000123 140.0
DYD3_k127_1400003_32 - - - - 0.0000000000000000000000000002812 116.0
DYD3_k127_1400003_33 - - - - 0.000000000000000002226 87.0
DYD3_k127_1400003_34 - - - - 0.00000000000003623 74.0
DYD3_k127_1400003_35 - - - - 0.00000000001252 71.0
DYD3_k127_1400003_36 - - - - 0.0000001625 56.0
DYD3_k127_1400003_4 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 579.0
DYD3_k127_1400003_5 AMP-binding enzyme C-terminal domain K02182 - 6.2.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009011 559.0
DYD3_k127_1400003_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 541.0
DYD3_k127_1400003_7 Putative sugar-binding N-terminal domain K21948 - 2.7.1.217 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 520.0
DYD3_k127_1400003_8 Belongs to the mandelate racemase muconate lactonizing enzyme family K22209 - 4.2.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 464.0
DYD3_k127_1400003_9 COG2031 Short chain fatty acids transporter K02106 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 464.0
DYD3_k127_1454095_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 597.0
DYD3_k127_1454095_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 537.0
DYD3_k127_1454095_10 diol metabolic process K01724 - 4.2.1.96 0.0000000000000000000000000000000000000000000001146 170.0
DYD3_k127_1454095_11 PFAM transcription elongation factor GreA GreB - - - 0.00000000000000000000000000000000000000000009301 167.0
DYD3_k127_1454095_12 L-lactate dehydrogenase activity - - - 0.0000000000000000000000000000000001193 134.0
DYD3_k127_1454095_13 TIGRFAM clan AA aspartic protease, TIGR02281 family K06985 - - 0.000000000000000000000000000000000171 139.0
DYD3_k127_1454095_14 effector of murein hydrolase LrgA K06518 - - 0.000000000000000000000007517 107.0
DYD3_k127_1454095_15 - - - - 0.00000000000000000000005145 100.0
DYD3_k127_1454095_16 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000001644 86.0
DYD3_k127_1454095_2 PFAM Peptidase M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 497.0
DYD3_k127_1454095_3 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 427.0
DYD3_k127_1454095_4 His Kinase A (phosphoacceptor) domain K02484,K07645 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 435.0
DYD3_k127_1454095_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 336.0
DYD3_k127_1454095_6 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 282.0
DYD3_k127_1454095_7 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003461 278.0
DYD3_k127_1454095_8 response regulator K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009714 263.0
DYD3_k127_1454095_9 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000001219 186.0
DYD3_k127_1514678_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1059.0
DYD3_k127_1514678_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 4.851e-319 996.0
DYD3_k127_1514678_2 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 469.0
DYD3_k127_1514678_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 303.0
DYD3_k127_1514678_4 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.0000000000000000000000000000000000000000000000000000000000000000009041 229.0
DYD3_k127_1514678_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000001059 155.0
DYD3_k127_1514678_6 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000003744 138.0
DYD3_k127_1514678_7 - - - - 0.000000006336 59.0
DYD3_k127_1550836_0 Metallopeptidase family M24 - - - 9.191e-195 616.0
DYD3_k127_1550836_1 Transketolase, pyrimidine binding domain K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 525.0
DYD3_k127_1550836_10 proline dipeptidase activity K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 303.0
DYD3_k127_1550836_11 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000005063 252.0
DYD3_k127_1550836_12 alpha beta - - - 0.0000000000000000000000000000000000000000000000000000000000000000007649 242.0
DYD3_k127_1550836_13 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000005439 225.0
DYD3_k127_1550836_14 binding-protein-dependent transport systems inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000008851 213.0
DYD3_k127_1550836_15 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000003222 198.0
DYD3_k127_1550836_16 NMT1-like family - - - 0.00000000000000000000000000000000000000002565 165.0
DYD3_k127_1550836_17 ornithine cyclodeaminase K01750 - 4.3.1.12 0.000000000000000000000000000000009511 140.0
DYD3_k127_1550836_2 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007864 435.0
DYD3_k127_1550836_3 e3 binding domain K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 384.0
DYD3_k127_1550836_4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 361.0
DYD3_k127_1550836_5 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 344.0
DYD3_k127_1550836_6 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 339.0
DYD3_k127_1550836_7 FMN-dependent dehydrogenase K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000522 330.0
DYD3_k127_1550836_8 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 320.0
DYD3_k127_1550836_9 ABC transporter K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 305.0
DYD3_k127_1571143_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 3.725e-239 745.0
DYD3_k127_1571143_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.111e-214 677.0
DYD3_k127_1571143_2 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005352 602.0
DYD3_k127_1571143_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000003571 177.0
DYD3_k127_1571143_4 Binds the 23S rRNA K02909 - - 0.00000000000000000000000000000009366 126.0
DYD3_k127_1571143_5 Protein of unknown function (DUF2846) - - - 0.000000000011 71.0
DYD3_k127_1571143_7 Protein of unknown function (DUF2846) - - - 0.0006466 48.0
DYD3_k127_1714024_0 COG1042 Acyl-CoA synthetase (NDP forming) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 552.0
DYD3_k127_1714024_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 395.0
DYD3_k127_1714024_2 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007744 342.0
DYD3_k127_1714024_3 PFAM Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002534 247.0
DYD3_k127_1714024_4 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000001396 247.0
DYD3_k127_1714024_5 Redoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000002028 242.0
DYD3_k127_1714024_6 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.0004867 48.0
DYD3_k127_1739949_0 Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 431.0
DYD3_k127_1739949_1 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005459 383.0
DYD3_k127_1739949_2 XdhC and CoxI family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 383.0
DYD3_k127_1739949_3 MgtC family K07507 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001616 285.0
DYD3_k127_1739949_4 glutathione transferase activity K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000156 235.0
DYD3_k127_1739949_5 carbon monoxide dehydrogenase K09386 - - 0.000000000000000000000000000000000000000000000001723 178.0
DYD3_k127_1741934_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 506.0
DYD3_k127_1741934_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 329.0
DYD3_k127_1741934_10 - - - - 0.00000000000000000001844 94.0
DYD3_k127_1741934_11 - - - - 0.00001786 52.0
DYD3_k127_1741934_2 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 308.0
DYD3_k127_1741934_3 LppC putative lipoprotein K07121 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006172 262.0
DYD3_k127_1741934_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000003723 244.0
DYD3_k127_1741934_5 PFAM transport-associated - - - 0.0000000000000000000000000000000000000000000000000000000000000002344 225.0
DYD3_k127_1741934_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.0000000000000000000000000000000000000002953 155.0
DYD3_k127_1741934_7 - - - - 0.00000000000000000000000000001624 122.0
DYD3_k127_1741934_8 PFAM Sporulation domain protein - - - 0.00000000000000000000000000003889 130.0
DYD3_k127_1741934_9 Belongs to the UPF0102 family K07460 - - 0.000000000000000000000000000109 120.0
DYD3_k127_180434_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005233 566.0
DYD3_k127_180434_1 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 550.0
DYD3_k127_180434_10 Catalyzes the synthesis of activated sulfate K00860,K00955 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000017 244.0
DYD3_k127_180434_11 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.2 0.000000000000000000000000000000000000000000000005968 179.0
DYD3_k127_180434_12 OmpA family - - - 0.0000000000000000000000000000000000000001281 161.0
DYD3_k127_180434_13 FecR protein - - - 0.000000000000000000000000000000000004867 143.0
DYD3_k127_180434_14 STAS domain K06378 - - 0.0000000000000000000000000689 112.0
DYD3_k127_180434_15 - - - - 0.000000000000000000000001685 104.0
DYD3_k127_180434_16 Protein of unknown function (DUF2283) - - - 0.0000000000000000000001206 98.0
DYD3_k127_180434_17 Histidine kinase-like ATPase domain - - - 0.00000000000000000178 90.0
DYD3_k127_180434_18 - - - - 0.00000000000001139 77.0
DYD3_k127_180434_2 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 482.0
DYD3_k127_180434_3 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 460.0
DYD3_k127_180434_4 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 385.0
DYD3_k127_180434_5 type I secretion outer membrane protein, TolC K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 391.0
DYD3_k127_180434_6 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 322.0
DYD3_k127_180434_7 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005051 321.0
DYD3_k127_180434_8 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 301.0
DYD3_k127_180434_9 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 301.0
DYD3_k127_1854020_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 2.691e-222 704.0
DYD3_k127_1854020_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 1.284e-208 656.0
DYD3_k127_1854020_10 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007173 329.0
DYD3_k127_1854020_11 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 298.0
DYD3_k127_1854020_12 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000442 289.0
DYD3_k127_1854020_13 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000012 276.0
DYD3_k127_1854020_14 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001831 280.0
DYD3_k127_1854020_15 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000192 239.0
DYD3_k127_1854020_16 LUD domain K00782 - - 0.0000000000000000000000000000000000000000000000000000000000000000003053 235.0
DYD3_k127_1854020_17 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.00000000000000000000000000000000000000000000000000000000000000001748 230.0
DYD3_k127_1854020_18 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000001603 222.0
DYD3_k127_1854020_19 Sulfatase K01130 - 3.1.6.1 0.0000000000000000000000000000000000000000000000000000000000006552 214.0
DYD3_k127_1854020_2 4Fe-4S ferredoxin, iron-sulfur binding K18929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 588.0
DYD3_k127_1854020_20 Protein of unknown function (DUF3567) - - - 0.0000000004093 63.0
DYD3_k127_1854020_21 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000006336 59.0
DYD3_k127_1854020_3 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 542.0
DYD3_k127_1854020_4 GIY-YIG type nucleases (URI domain) K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009493 519.0
DYD3_k127_1854020_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 410.0
DYD3_k127_1854020_6 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781 - 5.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 407.0
DYD3_k127_1854020_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 374.0
DYD3_k127_1854020_8 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 365.0
DYD3_k127_1854020_9 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 347.0
DYD3_k127_1873455_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1161.0
DYD3_k127_1873455_1 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 6.462e-259 804.0
DYD3_k127_1873455_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 368.0
DYD3_k127_1878143_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666 - - 3.354e-250 782.0
DYD3_k127_1878143_1 Aldehyde dehydrogenase family K00128 - 1.2.1.3 1.027e-230 724.0
DYD3_k127_1878143_10 NADH flavin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 466.0
DYD3_k127_1878143_11 Isocitrate/isopropylmalate dehydrogenase K00031,K00052,K07246 - 1.1.1.42,1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 446.0
DYD3_k127_1878143_12 MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007434 422.0
DYD3_k127_1878143_13 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 344.0
DYD3_k127_1878143_14 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 323.0
DYD3_k127_1878143_15 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000092 310.0
DYD3_k127_1878143_16 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 293.0
DYD3_k127_1878143_17 serine threonine protein kinase K08282 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003101 291.0
DYD3_k127_1878143_18 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714,K21062 - 3.5.4.22,4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000004036 263.0
DYD3_k127_1878143_19 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004943 262.0
DYD3_k127_1878143_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 6.158e-212 672.0
DYD3_k127_1878143_20 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002683 255.0
DYD3_k127_1878143_21 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000000000001576 228.0
DYD3_k127_1878143_22 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000004643 224.0
DYD3_k127_1878143_23 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000002653 213.0
DYD3_k127_1878143_24 - K11477 - - 0.00000000000000000000000000000000000000000000000000000000004098 209.0
DYD3_k127_1878143_25 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000009362 206.0
DYD3_k127_1878143_26 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000008026 201.0
DYD3_k127_1878143_27 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000001859 174.0
DYD3_k127_1878143_28 HNH nucleases - - - 0.0000000000000000000000000000000000000000000002513 171.0
DYD3_k127_1878143_29 Lanthionine synthetase C family protein - - - 0.000000000000000000000000000000000000000001764 163.0
DYD3_k127_1878143_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 3.729e-205 653.0
DYD3_k127_1878143_30 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000000000000000000000000000001219 159.0
DYD3_k127_1878143_31 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.0000000000000000000000000000000000002401 145.0
DYD3_k127_1878143_32 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000007137 154.0
DYD3_k127_1878143_33 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000005829 124.0
DYD3_k127_1878143_34 GYD domain - - - 0.000000000000000000000000000001967 123.0
DYD3_k127_1878143_35 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.000000000000000000000000001335 124.0
DYD3_k127_1878143_36 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000000001721 112.0
DYD3_k127_1878143_37 Cold shock protein domain K03704 - - 0.000000000000000000000005805 103.0
DYD3_k127_1878143_38 Putative prokaryotic signal transducing protein - - - 0.0000000000000000002444 94.0
DYD3_k127_1878143_39 Cold shock K03704 - - 0.0000000000000000003264 93.0
DYD3_k127_1878143_4 Tripartite tricarboxylate transporter TctA family - - - 2.369e-200 635.0
DYD3_k127_1878143_40 Protein of unknown function (DUF3012) - - - 0.000000000000000003237 93.0
DYD3_k127_1878143_42 Protein of unknown function (DUF3500) - - - 0.0000000000003729 76.0
DYD3_k127_1878143_43 Transglycosylase associated protein - - - 0.00000000004079 67.0
DYD3_k127_1878143_44 Cupin 2, conserved barrel domain protein K19547 - 5.3.3.19 0.0000002148 62.0
DYD3_k127_1878143_45 Tripartite tricarboxylate transporter TctB family - - - 0.0001474 50.0
DYD3_k127_1878143_46 Protein of unknown function (DUF3500) - - - 0.0001663 49.0
DYD3_k127_1878143_5 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 5.93e-197 619.0
DYD3_k127_1878143_6 Tripartite tricarboxylate transporter TctA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 599.0
DYD3_k127_1878143_7 MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 578.0
DYD3_k127_1878143_8 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005825 519.0
DYD3_k127_1878143_9 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000669 484.0
DYD3_k127_1904857_0 GXGXG motif K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2307.0
DYD3_k127_1904857_1 PFAM glycosyl transferase, family 51 K05366 - 2.4.1.129,3.4.16.4 5.809e-311 970.0
DYD3_k127_1904857_10 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 603.0
DYD3_k127_1904857_11 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 572.0
DYD3_k127_1904857_12 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006113 539.0
DYD3_k127_1904857_13 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 537.0
DYD3_k127_1904857_14 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 531.0
DYD3_k127_1904857_15 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 520.0
DYD3_k127_1904857_16 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 511.0
DYD3_k127_1904857_17 Delta-aminolevulinic acid dehydratase K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006316 503.0
DYD3_k127_1904857_18 Type IV pilus assembly protein PilM K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000848 490.0
DYD3_k127_1904857_19 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 481.0
DYD3_k127_1904857_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.128e-267 836.0
DYD3_k127_1904857_20 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 442.0
DYD3_k127_1904857_21 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 414.0
DYD3_k127_1904857_22 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 409.0
DYD3_k127_1904857_23 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 410.0
DYD3_k127_1904857_24 FAD binding domain K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 333.0
DYD3_k127_1904857_25 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 320.0
DYD3_k127_1904857_26 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 322.0
DYD3_k127_1904857_27 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000009928 267.0
DYD3_k127_1904857_28 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004346 255.0
DYD3_k127_1904857_29 PFAM cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000006362 235.0
DYD3_k127_1904857_3 type IV pilus secretin PilQ K02666 - - 4.218e-266 836.0
DYD3_k127_1904857_30 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000005737 224.0
DYD3_k127_1904857_31 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000000000000000000002769 225.0
DYD3_k127_1904857_32 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000000000000000001473 224.0
DYD3_k127_1904857_33 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000001042 214.0
DYD3_k127_1904857_34 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000000000000000009647 203.0
DYD3_k127_1904857_35 Fimbrial assembly protein (PilN) K02663 - - 0.00000000000000000000000000000000000000000000000000001818 196.0
DYD3_k127_1904857_36 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000002819 187.0
DYD3_k127_1904857_37 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000001351 180.0
DYD3_k127_1904857_38 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000000001797 178.0
DYD3_k127_1904857_39 Sporulation related domain - - - 0.0000000000000000000000000000000000000000000001713 174.0
DYD3_k127_1904857_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.277e-265 822.0
DYD3_k127_1904857_40 pilus assembly protein PilP K02665 - - 0.0000000000000000000000000000000000000000000007182 171.0
DYD3_k127_1904857_41 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000003844 169.0
DYD3_k127_1904857_42 Rubredoxin - - - 0.000000000000000000000000000009365 118.0
DYD3_k127_1904857_43 Belongs to the transcriptional regulatory Fis family K03557 - - 0.00000000000000000000000001074 114.0
DYD3_k127_1904857_44 - - - - 0.0000000000000003361 83.0
DYD3_k127_1904857_45 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000004286 63.0
DYD3_k127_1904857_5 glutamate synthase K00266 - 1.4.1.13,1.4.1.14 4.317e-242 760.0
DYD3_k127_1904857_6 Arginyl-tRNA synthetase K01887 - 6.1.1.19 6.782e-238 750.0
DYD3_k127_1904857_7 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.875e-225 721.0
DYD3_k127_1904857_8 Aminotransferase K01845 - 5.4.3.8 1.336e-200 635.0
DYD3_k127_1904857_9 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 5.34e-198 642.0
DYD3_k127_19097_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1299.0
DYD3_k127_19097_1 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 1.844e-252 790.0
DYD3_k127_19097_10 Neisseria PilC beta-propeller domain K02674 - - 0.000002395 51.0
DYD3_k127_19097_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 473.0
DYD3_k127_19097_3 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 424.0
DYD3_k127_19097_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 408.0
DYD3_k127_19097_5 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 293.0
DYD3_k127_19097_6 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.0000000000000000000000000000000000000000000000000000000000000000001223 238.0
DYD3_k127_19097_7 Phosphonate ABC transporter K02042 - - 0.000000000000000000000000000000000000000000000000000000000000001238 221.0
DYD3_k127_19097_8 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000005157 179.0
DYD3_k127_19097_9 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000001167 175.0
DYD3_k127_194285_0 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005678 317.0
DYD3_k127_194285_1 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000011 296.0
DYD3_k127_194285_2 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000000000000000000000000000000000000000000000000001286 229.0
DYD3_k127_194285_3 Belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000000000000000000000000005945 213.0
DYD3_k127_194285_4 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000001412 199.0
DYD3_k127_194285_5 COG0520 Selenocysteine lyase - - - 0.00000000000000000000000000000000000000000000000000006619 202.0
DYD3_k127_194285_6 Protein of unknown function (DUF3467) - - - 0.000000000000000000000000000004194 123.0
DYD3_k127_195356_0 belongs to the aldehyde dehydrogenase family K00128,K00130 - 1.2.1.3,1.2.1.8 4.986e-245 772.0
DYD3_k127_195356_1 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 6.08e-229 721.0
DYD3_k127_195356_10 Multidrug transporter K08161 - - 0.0000000000000000000000000000000000000000000000002074 192.0
DYD3_k127_195356_11 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000004485 158.0
DYD3_k127_195356_12 ThiS family K03636 - - 0.00000000000000000000000000000008316 129.0
DYD3_k127_195356_13 Glyoxalase-like domain K08234 - - 0.000000005047 67.0
DYD3_k127_195356_14 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00003818 53.0
DYD3_k127_195356_2 Tripartite tricarboxylate transporter TctA family - - - 1.057e-208 670.0
DYD3_k127_195356_3 Amidohydrolase family K01485 - 3.5.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 447.0
DYD3_k127_195356_4 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 304.0
DYD3_k127_195356_5 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000662 281.0
DYD3_k127_195356_6 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000004949 262.0
DYD3_k127_195356_7 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000004804 222.0
DYD3_k127_195356_8 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000001505 222.0
DYD3_k127_195356_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000001729 198.0
DYD3_k127_2029716_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 557.0
DYD3_k127_2029716_1 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 394.0
DYD3_k127_2029716_2 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 296.0
DYD3_k127_2029716_3 PFAM MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003121 271.0
DYD3_k127_2029716_4 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000118 266.0
DYD3_k127_2029716_5 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000003118 229.0
DYD3_k127_2029716_6 COG1042 Acyl-CoA synthetase (NDP forming) - - - 0.000004436 49.0
DYD3_k127_2072333_0 ABC transporter transmembrane region K06147 - - 7.088e-239 753.0
DYD3_k127_2072333_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 5.484e-237 739.0
DYD3_k127_2072333_10 Two component transcriptional regulator, winged helix family K02483,K07666,K07774 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 293.0
DYD3_k127_2072333_11 PFAM NUDIX hydrolase K08310 - 3.6.1.67 0.0000000000000000000000000000000000000000000000000000000000299 210.0
DYD3_k127_2072333_12 Ribonuclease K01167 - 3.1.27.3 0.00000000000000000000000000000001365 131.0
DYD3_k127_2072333_13 Barstar (barnase inhibitor) - - - 0.000000000000000000002507 98.0
DYD3_k127_2072333_14 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000004639 81.0
DYD3_k127_2072333_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 607.0
DYD3_k127_2072333_3 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 447.0
DYD3_k127_2072333_4 histidine kinase HAMP region domain protein K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 378.0
DYD3_k127_2072333_5 PFAM Endonuclease exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 357.0
DYD3_k127_2072333_6 Methyltransferase K18911 - 2.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 357.0
DYD3_k127_2072333_7 major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008587 312.0
DYD3_k127_2072333_8 Alpha/beta hydrolase family K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003762 302.0
DYD3_k127_2072333_9 Beta-lactamase enzyme family K07262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 300.0
DYD3_k127_2130434_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.5e-323 996.0
DYD3_k127_2130434_1 cytochrome c oxidase (Subunit II) K02275 - 1.9.3.1 3.913e-199 629.0
DYD3_k127_2130434_10 Pilus assembly protein K12279 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002104 260.0
DYD3_k127_2130434_11 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000006304 236.0
DYD3_k127_2130434_12 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000007861 233.0
DYD3_k127_2130434_13 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.000000000000000000000000000000000000000000000000000000000006012 224.0
DYD3_k127_2130434_14 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000006621 201.0
DYD3_k127_2130434_15 Tetratricopeptide repeat K12284 - - 0.000000000000000000000000000000000000000000000259 182.0
DYD3_k127_2130434_16 carbon utilization K12280 - - 0.000000000000000000000000000164 129.0
DYD3_k127_2130434_17 Fimbrial assembly protein (PilN) - - - 0.00000000000000000000000008012 120.0
DYD3_k127_2130434_18 - K12281 - - 0.00000000002815 72.0
DYD3_k127_2130434_2 type II and III secretion system protein K02453,K12282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 548.0
DYD3_k127_2130434_3 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 496.0
DYD3_k127_2130434_4 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 494.0
DYD3_k127_2130434_5 Cytochrome c oxidase subunit III K02276,K02299 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 384.0
DYD3_k127_2130434_6 AAA domain K02450,K12283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 368.0
DYD3_k127_2130434_7 Conserved repeat domain K12287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006917 373.0
DYD3_k127_2130434_8 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 325.0
DYD3_k127_2130434_9 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000231 273.0
DYD3_k127_2130819_0 Cytochrome D1 heme domain K15864 - 1.7.2.1,1.7.99.1 4.639e-284 893.0
DYD3_k127_2130819_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 2.277e-273 845.0
DYD3_k127_2130819_10 STAS domain K03321 - - 6.197e-217 689.0
DYD3_k127_2130819_11 COG0471 Di- and tricarboxylate transporters - - - 2.52e-212 677.0
DYD3_k127_2130819_12 4Fe-4S single cluster domain - - - 1.008e-210 659.0
DYD3_k127_2130819_13 B12 binding domain - - - 1.351e-210 685.0
DYD3_k127_2130819_14 FMN-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 616.0
DYD3_k127_2130819_15 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 602.0
DYD3_k127_2130819_16 cytochrome d1 heme K19345 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 551.0
DYD3_k127_2130819_17 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 546.0
DYD3_k127_2130819_18 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 548.0
DYD3_k127_2130819_19 Ethylbenzene dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 529.0
DYD3_k127_2130819_2 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 1.499e-257 805.0
DYD3_k127_2130819_20 Cytochrome C and Quinol oxidase polypeptide I - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 546.0
DYD3_k127_2130819_21 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 511.0
DYD3_k127_2130819_22 isochorismatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 481.0
DYD3_k127_2130819_23 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 484.0
DYD3_k127_2130819_24 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 450.0
DYD3_k127_2130819_25 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 436.0
DYD3_k127_2130819_26 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 428.0
DYD3_k127_2130819_27 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 407.0
DYD3_k127_2130819_28 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 379.0
DYD3_k127_2130819_29 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 373.0
DYD3_k127_2130819_3 DNA polymerase X family K02347 - - 2.306e-256 801.0
DYD3_k127_2130819_30 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 366.0
DYD3_k127_2130819_31 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 343.0
DYD3_k127_2130819_32 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 340.0
DYD3_k127_2130819_33 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 336.0
DYD3_k127_2130819_34 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 353.0
DYD3_k127_2130819_35 cytochrome C oxidase K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 325.0
DYD3_k127_2130819_36 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882 320.0
DYD3_k127_2130819_37 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 328.0
DYD3_k127_2130819_38 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 302.0
DYD3_k127_2130819_39 cytochrome c oxidase (Subunit II) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 283.0
DYD3_k127_2130819_4 cation transport ATPase K01533 - 3.6.3.4 1.338e-247 790.0
DYD3_k127_2130819_40 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001063 287.0
DYD3_k127_2130819_41 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001838 280.0
DYD3_k127_2130819_42 Pfam Periplasmic binding protein K02016,K06858 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001476 276.0
DYD3_k127_2130819_43 Bacterial regulatory proteins, luxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002247 265.0
DYD3_k127_2130819_44 PFAM peptidase M48 Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001269 266.0
DYD3_k127_2130819_45 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000001471 240.0
DYD3_k127_2130819_46 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002919 239.0
DYD3_k127_2130819_47 Regulator K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000008844 237.0
DYD3_k127_2130819_48 PFAM electron transport protein SCO1 SenC K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000004722 241.0
DYD3_k127_2130819_49 transcriptional regulator AsnC family - - - 0.000000000000000000000000000000000000000000000000000000000000001352 223.0
DYD3_k127_2130819_5 Cytochrome b(N-terminal)/b6/petB - - - 1.877e-247 781.0
DYD3_k127_2130819_50 - - - - 0.000000000000000000000000000000000000000000000000000000001184 207.0
DYD3_k127_2130819_51 overlaps another CDS with the same product name - - - 0.00000000000000000000000000000000000000000000000000000006765 202.0
DYD3_k127_2130819_52 Part of a membrane complex involved in electron transport K03616 - - 0.000000000000000000000000000000000000000000000000000001562 202.0
DYD3_k127_2130819_53 Domain of unknown function (DUF4202) - - - 0.000000000000000000000000000000000000000000000000000002899 197.0
DYD3_k127_2130819_54 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000264 194.0
DYD3_k127_2130819_55 Archease protein family (MTH1598/TM1083) - - - 0.00000000000000000000000000000000000000000000001343 174.0
DYD3_k127_2130819_56 - - - - 0.0000000000000000000000000000000000000000000001081 173.0
DYD3_k127_2130819_57 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000001437 170.0
DYD3_k127_2130819_58 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000001948 146.0
DYD3_k127_2130819_59 Anti-sigma-K factor rskA - - - 0.0000000000000000000000000000000009096 139.0
DYD3_k127_2130819_6 Belongs to the RtcB family K14415,K18148 - 6.5.1.3 1.693e-246 768.0
DYD3_k127_2130819_60 FixH K09926 - - 0.00000000000000000000000000000001907 130.0
DYD3_k127_2130819_61 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000008649 132.0
DYD3_k127_2130819_62 Invasion gene expression up-regulator SirB - - - 0.0000000000000000000000000000004352 126.0
DYD3_k127_2130819_63 'Cold-shock' DNA-binding domain - - - 0.000000000000000000000000000000638 124.0
DYD3_k127_2130819_64 Universal stress protein - - - 0.00000000000000000000000000005412 122.0
DYD3_k127_2130819_65 Cytochrome c K08738 - - 0.00000000000000000000000000005537 119.0
DYD3_k127_2130819_66 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000091 117.0
DYD3_k127_2130819_67 Cytochrome C oxidase, cbb3-type, subunit III K19344 - - 0.00000000000000000000000009099 112.0
DYD3_k127_2130819_68 cytochrome oxidase assembly K02259 - - 0.000000000000000000008728 104.0
DYD3_k127_2130819_69 Protein required for attachment to host cells - - - 0.00000000000000000001579 97.0
DYD3_k127_2130819_7 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03821 - - 2.707e-243 765.0
DYD3_k127_2130819_70 Protein of unknown function (DUF1161) - - - 0.0000000000000000004593 89.0
DYD3_k127_2130819_71 - - - - 0.000000000000000003107 93.0
DYD3_k127_2130819_72 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000008932 83.0
DYD3_k127_2130819_73 - - - - 0.0000000000000005807 81.0
DYD3_k127_2130819_74 Bacterial SH3 domain - - - 0.0000000000000009291 84.0
DYD3_k127_2130819_75 cytochrome oxidase maturation protein cbb3-type - - - 0.0000000000000906 76.0
DYD3_k127_2130819_76 cheY-homologous receiver domain - - - 0.0000000000004947 76.0
DYD3_k127_2130819_77 - - - - 0.000000000000945 70.0
DYD3_k127_2130819_78 - - - - 0.0000000005948 63.0
DYD3_k127_2130819_79 Cbb3-type cytochrome oxidase, subunit 3 K00407 - - 0.000000002554 60.0
DYD3_k127_2130819_8 modulator of DNA gyrase K03568 - - 3.509e-239 750.0
DYD3_k127_2130819_80 Uncharacterized conserved protein (DUF2249) - - - 0.0000004286 59.0
DYD3_k127_2130819_9 Cytochrome D1 heme domain - - - 1.241e-231 726.0
DYD3_k127_2135162_0 Domain of unknown function (DUF3391) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 368.0
DYD3_k127_2135162_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002967 273.0
DYD3_k127_2135162_10 - - - - 0.000000000004237 77.0
DYD3_k127_2135162_12 COG0457 FOG TPR repeat - - - 0.0000002007 55.0
DYD3_k127_2135162_2 NADP oxidoreductase, coenzyme f420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000014 232.0
DYD3_k127_2135162_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002633 231.0
DYD3_k127_2135162_4 PFAM short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000001309 169.0
DYD3_k127_2135162_5 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.0000000000000000000000000000000000000401 149.0
DYD3_k127_2135162_6 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000001106 146.0
DYD3_k127_2135162_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.0000000000000000000000000000000007439 137.0
DYD3_k127_2135162_8 Amidase - - - 0.000000000000000000000000000002932 125.0
DYD3_k127_2135162_9 Psort location Cytoplasmic, score 8.87 - - - 0.00000000000003389 84.0
DYD3_k127_2204823_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K15509 - 1.1.1.308 2.975e-202 640.0
DYD3_k127_2204823_1 Sodium/hydrogen exchanger family K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 429.0
DYD3_k127_2204823_10 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000000000000000000000000000000009638 154.0
DYD3_k127_2204823_11 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000001355 167.0
DYD3_k127_2204823_12 ORF6N domain - - - 0.0000000000000000000000000000000000000006072 154.0
DYD3_k127_2204823_13 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.000000000000000000000000000000000000002137 152.0
DYD3_k127_2204823_14 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000000000000000000002357 130.0
DYD3_k127_2204823_15 SpoIIAA-like - - - 0.00000000000000000000000000000006776 130.0
DYD3_k127_2204823_16 Glyoxalase-like domain K08234 - - 0.00000000000000000000000000006386 123.0
DYD3_k127_2204823_17 Glyoxalase-like domain - - - 0.00000000000000000000000000009089 128.0
DYD3_k127_2204823_18 Cold shock K03704 - - 0.000000000000000000000003579 105.0
DYD3_k127_2204823_19 - - - - 0.000000000002088 70.0
DYD3_k127_2204823_2 ATP-dependent Clp protease adaptor protein ClpS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007759 349.0
DYD3_k127_2204823_20 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046,K00065 - 1.1.1.127,1.1.1.69 0.000000000104 69.0
DYD3_k127_2204823_22 Protein of unknown function (DUF3018) - - - 0.00000003104 64.0
DYD3_k127_2204823_23 - - - - 0.0000002139 57.0
DYD3_k127_2204823_3 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009339 289.0
DYD3_k127_2204823_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000173 289.0
DYD3_k127_2204823_5 Zeta toxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003481 276.0
DYD3_k127_2204823_6 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001492 269.0
DYD3_k127_2204823_7 - - - - 0.0000000000000000000000000000000000000000000000000000000001518 209.0
DYD3_k127_2204823_8 NUDIX domain - - - 0.000000000000000000000000000000000000000000000007392 176.0
DYD3_k127_2204823_9 Tripartite tricarboxylate transporter family receptor K07795 - - 0.0000000000000000000000000000000000000000000003521 182.0
DYD3_k127_2214035_0 PFAM Glycoside hydrolase family 65, central catalytic - - - 0.0 1028.0
DYD3_k127_2214035_1 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 2.607e-253 792.0
DYD3_k127_2214035_10 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000001328 112.0
DYD3_k127_2214035_11 short-chain K00059 - 1.1.1.100 0.00000000002378 66.0
DYD3_k127_2214035_12 COG0457 FOG TPR repeat - - - 0.00000009861 61.0
DYD3_k127_2214035_2 C4-dicarboxylate ABC transporter permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 463.0
DYD3_k127_2214035_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 426.0
DYD3_k127_2214035_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009099 396.0
DYD3_k127_2214035_5 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 362.0
DYD3_k127_2214035_6 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 301.0
DYD3_k127_2214035_7 Pilin (bacterial filament) K02650 - - 0.00000000000000000000000000000000000000000000000000001863 192.0
DYD3_k127_2214035_8 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000008931 183.0
DYD3_k127_2214035_9 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000005066 143.0
DYD3_k127_2214805_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000001433 193.0
DYD3_k127_2214805_1 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000001658 143.0
DYD3_k127_2214805_2 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000008868 134.0
DYD3_k127_2214805_3 COG2199 FOG GGDEF domain - - - 0.00000000000000000001599 100.0
DYD3_k127_2214805_4 DoxX K15977 - - 0.0000000000000003628 83.0
DYD3_k127_2214805_5 YCII-related domain K09780 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000003308 80.0
DYD3_k127_2237547_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 538.0
DYD3_k127_2237547_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 410.0
DYD3_k127_2237547_2 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 364.0
DYD3_k127_2237547_3 abc transporter K02003,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 325.0
DYD3_k127_2245199_0 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.0 1013.0
DYD3_k127_2245199_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.697e-317 985.0
DYD3_k127_2245199_10 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 571.0
DYD3_k127_2245199_11 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524 569.0
DYD3_k127_2245199_12 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 519.0
DYD3_k127_2245199_13 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 441.0
DYD3_k127_2245199_14 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 409.0
DYD3_k127_2245199_15 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 388.0
DYD3_k127_2245199_16 CHAD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 400.0
DYD3_k127_2245199_17 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 362.0
DYD3_k127_2245199_18 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 328.0
DYD3_k127_2245199_19 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 315.0
DYD3_k127_2245199_2 Diguanylate cyclase - - - 3.513e-281 897.0
DYD3_k127_2245199_20 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009596 276.0
DYD3_k127_2245199_21 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000003172 265.0
DYD3_k127_2245199_22 RNA methyltransferase K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000003415 249.0
DYD3_k127_2245199_23 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000003174 215.0
DYD3_k127_2245199_24 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000002484 204.0
DYD3_k127_2245199_25 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000001718 197.0
DYD3_k127_2245199_26 Phosphoglycerate mutase family K08296 - - 0.000000000000000000000000000000000000000000000001723 178.0
DYD3_k127_2245199_27 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000000000000000000009946 166.0
DYD3_k127_2245199_28 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000005641 156.0
DYD3_k127_2245199_29 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000006508 153.0
DYD3_k127_2245199_3 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 6.363e-241 756.0
DYD3_k127_2245199_30 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000000006338 141.0
DYD3_k127_2245199_31 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000238 127.0
DYD3_k127_2245199_32 Domain of unknown function (DUF4124) - - - 0.0000000002936 66.0
DYD3_k127_2245199_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 6.802e-218 684.0
DYD3_k127_2245199_5 TrkA-N domain protein K03499 - - 1.162e-209 661.0
DYD3_k127_2245199_6 dihydroorotase K01465 - 3.5.2.3 5.533e-209 655.0
DYD3_k127_2245199_7 PFAM DNA photolyase FAD-binding K01669 - 4.1.99.3 2.121e-204 646.0
DYD3_k127_2245199_8 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806 586.0
DYD3_k127_2245199_9 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 581.0
DYD3_k127_2372310_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1165.0
DYD3_k127_2372310_1 Protein of unknown function (DUF4197) - - - 0.00000000000000000000000000002542 119.0
DYD3_k127_2372310_2 Protein of unknown function (DUF2782) - - - 0.00000000000007224 83.0
DYD3_k127_2373869_0 DegT/DnrJ/EryC1/StrS aminotransferase family K14287 - 2.6.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191 472.0
DYD3_k127_2373869_1 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 336.0
DYD3_k127_2373869_10 NIPSNAP - - - 0.00000000000000000000000000000000005057 136.0
DYD3_k127_2373869_11 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000003437 127.0
DYD3_k127_2373869_12 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000001652 109.0
DYD3_k127_2373869_13 proline dipeptidase activity K01262 - 3.4.11.9 0.000000000000000000112 89.0
DYD3_k127_2373869_14 Glycine zipper 2TM domain - - - 0.0000979 51.0
DYD3_k127_2373869_15 Glycine zipper 2TM domain - - - 0.0001326 51.0
DYD3_k127_2373869_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 337.0
DYD3_k127_2373869_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007778 317.0
DYD3_k127_2373869_4 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 319.0
DYD3_k127_2373869_5 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007654 277.0
DYD3_k127_2373869_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001187 277.0
DYD3_k127_2373869_7 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001858 269.0
DYD3_k127_2373869_8 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000959 184.0
DYD3_k127_2373869_9 - - - - 0.0000000000000000000000000000000000253 149.0
DYD3_k127_2399956_0 FAD linked oxidases, C-terminal domain K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 1.668e-236 739.0
DYD3_k127_2399956_1 transport system fused permease components - - - 5.292e-233 737.0
DYD3_k127_2399956_2 ATPase (AAA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 475.0
DYD3_k127_2399956_3 4Fe-4S dicluster domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 473.0
DYD3_k127_2399956_4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 464.0
DYD3_k127_2399956_5 Belongs to the hyi family K01816 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0008150,GO:0008152,GO:0008903,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019752,GO:0032787,GO:0042802,GO:0042803,GO:0043436,GO:0044237,GO:0044281,GO:0046487,GO:0046983,GO:0071704 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 406.0
DYD3_k127_2399956_6 FAD binding domain K11472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 407.0
DYD3_k127_2399956_7 transport system periplasmic component K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 367.0
DYD3_k127_2399956_8 MobA-like NTP transferase domain - - - 0.000000000000000000000000000000000000000000000006615 178.0
DYD3_k127_2434398_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 4.333e-276 866.0
DYD3_k127_2434398_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 4.175e-266 841.0
DYD3_k127_2434398_10 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003833 523.0
DYD3_k127_2434398_11 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 541.0
DYD3_k127_2434398_12 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 494.0
DYD3_k127_2434398_13 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 488.0
DYD3_k127_2434398_14 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 480.0
DYD3_k127_2434398_15 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 473.0
DYD3_k127_2434398_16 Belongs to the peptidase S1B family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 468.0
DYD3_k127_2434398_17 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 441.0
DYD3_k127_2434398_18 Creatinine amidohydrolase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006493 399.0
DYD3_k127_2434398_19 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 396.0
DYD3_k127_2434398_2 formate hydrogenlyase subunit 3 multisubunit Na H antiporter, MnhD subunit K05568,K12137 - - 3.546e-255 798.0
DYD3_k127_2434398_20 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 393.0
DYD3_k127_2434398_21 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00015,K00090 - 1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 370.0
DYD3_k127_2434398_22 gluconolactonase K01053,K14274 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 359.0
DYD3_k127_2434398_23 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 330.0
DYD3_k127_2434398_24 AAA domain, putative AbiEii toxin, Type IV TA system K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 332.0
DYD3_k127_2434398_25 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004042 294.0
DYD3_k127_2434398_26 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 292.0
DYD3_k127_2434398_27 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008526 286.0
DYD3_k127_2434398_28 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001886 304.0
DYD3_k127_2434398_29 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000132 276.0
DYD3_k127_2434398_3 GMC oxidoreductase K00108 - 1.1.99.1 6.324e-238 746.0
DYD3_k127_2434398_30 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008806 278.0
DYD3_k127_2434398_31 thiolester hydrolase activity K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003388 272.0
DYD3_k127_2434398_32 abc transporter, ATP-binding protein K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000008471 258.0
DYD3_k127_2434398_33 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002933 248.0
DYD3_k127_2434398_34 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006195 249.0
DYD3_k127_2434398_35 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000004267 240.0
DYD3_k127_2434398_36 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000001061 240.0
DYD3_k127_2434398_37 Na H antiporter, MnhB K05566 - - 0.0000000000000000000000000000000000000000000000000000000000000001497 225.0
DYD3_k127_2434398_38 PFAM ABC transporter related K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000003655 228.0
DYD3_k127_2434398_39 Na H antiporter, MnhB K05566 - - 0.00000000000000000000000000000000000000000000000000000000008688 209.0
DYD3_k127_2434398_4 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 7.65e-224 706.0
DYD3_k127_2434398_40 COG1863 Multisubunit Na H antiporter MnhE subunit K05569 - - 0.0000000000000000000000000000000000000000000000000000002838 197.0
DYD3_k127_2434398_42 CBS domain - - - 0.00000000000000000000000000000000000000000000001277 176.0
DYD3_k127_2434398_43 HIT domain K02503 - - 0.00000000000000000000000000000000000000000000002251 172.0
DYD3_k127_2434398_44 Amidohydrolase - - - 0.000000000000000000000000000000000000000000001069 170.0
DYD3_k127_2434398_45 COG1006 Multisubunit Na H antiporter, MnhC subunit K05567 - - 0.00000000000000000000000000000000000000000001483 172.0
DYD3_k127_2434398_46 Phasin protein - - - 0.000000000000000000000000000000000000000005365 160.0
DYD3_k127_2434398_47 flavin reductase - - - 0.0000000000000000000000000000000000000001549 158.0
DYD3_k127_2434398_48 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000000000000443 149.0
DYD3_k127_2434398_49 Cupin 2, conserved barrel domain protein K00450,K01628 - 1.13.11.4,4.1.2.17 0.000000000000000000000000000000000006855 145.0
DYD3_k127_2434398_5 Proton-conducting membrane transporter - - - 3.227e-210 668.0
DYD3_k127_2434398_50 monovalent cation:proton antiporter activity K05571 - - 0.00000000000000000000000000000000001302 142.0
DYD3_k127_2434398_51 Universal stress protein family - - - 0.0000000000000000000000000000000005881 137.0
DYD3_k127_2434398_52 Carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000004457 132.0
DYD3_k127_2434398_53 Multiple resistance and pH regulation protein F K05570 - - 0.000000000000000000000000000003225 122.0
DYD3_k127_2434398_54 Cupin domain - - - 0.00000000000000000000000001681 115.0
DYD3_k127_2434398_55 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000001483 108.0
DYD3_k127_2434398_56 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000000000000000000001917 114.0
DYD3_k127_2434398_57 2-dehydrogenase K00010 - 1.1.1.18,1.1.1.369 0.00000000000000000000002195 112.0
DYD3_k127_2434398_58 - - - - 0.00000000000000000008638 95.0
DYD3_k127_2434398_59 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000003322 85.0
DYD3_k127_2434398_6 Proton-conducting membrane transporter - - - 2.845e-199 632.0
DYD3_k127_2434398_60 - - - - 0.0000000000000003628 89.0
DYD3_k127_2434398_61 Amidohydrolase - - - 0.0000000000003074 74.0
DYD3_k127_2434398_62 Antibiotic biosynthesis monooxygenase - - - 0.000000000003551 70.0
DYD3_k127_2434398_63 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000179 68.0
DYD3_k127_2434398_64 PFAM conserved - - - 0.0000000005207 62.0
DYD3_k127_2434398_65 Molybdopterin binding - - - 0.0009645 43.0
DYD3_k127_2434398_7 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 8.976e-194 614.0
DYD3_k127_2434398_8 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 541.0
DYD3_k127_2434398_9 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 528.0
DYD3_k127_2451793_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1252.0
DYD3_k127_2451793_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 4.301e-305 941.0
DYD3_k127_2451793_10 3-beta hydroxysteroid dehydrogenase/isomerase family K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 452.0
DYD3_k127_2451793_11 Prephenate dehydratase K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008434 436.0
DYD3_k127_2451793_12 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 414.0
DYD3_k127_2451793_13 Bifunctional protein K03272,K21344 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 387.0
DYD3_k127_2451793_14 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 345.0
DYD3_k127_2451793_15 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 312.0
DYD3_k127_2451793_16 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 299.0
DYD3_k127_2451793_17 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006188 280.0
DYD3_k127_2451793_18 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000002305 262.0
DYD3_k127_2451793_19 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000003703 250.0
DYD3_k127_2451793_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 588.0
DYD3_k127_2451793_20 Phosphoglycolate phosphatase K22292 - 3.1.3.105 0.00000000000000000000000000000000000000000000000000000000000000000000008678 245.0
DYD3_k127_2451793_21 protein conserved in bacteria K09978 - - 0.0000000000000000000000000000000000000000000000005803 181.0
DYD3_k127_2451793_22 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.0000000000000000000000000000000000000000000006906 166.0
DYD3_k127_2451793_23 Belongs to the ompA family K03286 - - 0.000000000000000000000000000001371 130.0
DYD3_k127_2451793_24 Cold shock protein domain K03704 - - 0.000000000000000000000000001286 116.0
DYD3_k127_2451793_25 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000000000000006283 96.0
DYD3_k127_2451793_27 - - - - 0.0000000000005421 76.0
DYD3_k127_2451793_3 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006662 577.0
DYD3_k127_2451793_4 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 549.0
DYD3_k127_2451793_5 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 536.0
DYD3_k127_2451793_6 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 525.0
DYD3_k127_2451793_7 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 506.0
DYD3_k127_2451793_8 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006638 490.0
DYD3_k127_2451793_9 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 486.0
DYD3_k127_2458610_0 Class II Aldolase and Adducin N-terminal domain - - - 1.807e-290 905.0
DYD3_k127_2458610_1 GMP synthase C terminal domain K01951 - 6.3.5.2 1.165e-284 897.0
DYD3_k127_2458610_10 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000000000000000000000417 218.0
DYD3_k127_2458610_11 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000000000000000755 170.0
DYD3_k127_2458610_12 Domain of unknown function (DUF4936) - - - 0.00000000001114 70.0
DYD3_k127_2458610_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.869e-230 722.0
DYD3_k127_2458610_3 Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.377e-218 687.0
DYD3_k127_2458610_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 436.0
DYD3_k127_2458610_5 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 345.0
DYD3_k127_2458610_6 Transport and Golgi organisation 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001419 269.0
DYD3_k127_2458610_7 Belongs to the GcvT family K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002841 261.0
DYD3_k127_2458610_8 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005298 264.0
DYD3_k127_2458610_9 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001702 245.0
DYD3_k127_2461431_0 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 2.957e-254 793.0
DYD3_k127_2461431_1 Alanine-glyoxylate amino-transferase K00375,K05825 - - 8.481e-197 620.0
DYD3_k127_2461431_10 Dehydrogenase K00031,K00052,K07246 - 1.1.1.42,1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003605 451.0
DYD3_k127_2461431_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365 381.0
DYD3_k127_2461431_12 alpha/beta hydrolase fold K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 348.0
DYD3_k127_2461431_13 Curli production assembly/transport component CsgG K06214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 338.0
DYD3_k127_2461431_14 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 334.0
DYD3_k127_2461431_15 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 314.0
DYD3_k127_2461431_16 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000189 288.0
DYD3_k127_2461431_17 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005439 284.0
DYD3_k127_2461431_18 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007379 297.0
DYD3_k127_2461431_19 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002119 258.0
DYD3_k127_2461431_2 MmgE/PrpD family - - - 2.937e-195 620.0
DYD3_k127_2461431_20 VacJ family lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003043 254.0
DYD3_k127_2461431_21 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000009086 203.0
DYD3_k127_2461431_22 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000001279 206.0
DYD3_k127_2461431_23 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000192 180.0
DYD3_k127_2461431_24 LuxR family transcriptional regulator K04333,K20918 - - 0.00000000000000000000000000000000000000000001249 172.0
DYD3_k127_2461431_25 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000001383 163.0
DYD3_k127_2461431_26 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.0000000000000000000000000000000000000000006266 172.0
DYD3_k127_2461431_28 Type VIII secretion system (T8SS), CsgF protein K04338 - - 0.00000000000000000000000000000000007114 138.0
DYD3_k127_2461431_29 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000004584 106.0
DYD3_k127_2461431_3 Conserved TM helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 565.0
DYD3_k127_2461431_30 PFAM Curlin associated repeat protein - - - 0.00000000000000000000001628 113.0
DYD3_k127_2461431_31 (Lipo)protein - - - 0.00000000000000000001728 99.0
DYD3_k127_2461431_32 (Lipo)protein - - - 0.0000000000000001368 86.0
DYD3_k127_2461431_33 Curli assembly protein CsgE K04337 - - 0.0000000000000007782 83.0
DYD3_k127_2461431_34 SmpA / OmlA family - - - 0.00000000000000395 83.0
DYD3_k127_2461431_37 Curlin associated repeat - - - 0.00009075 51.0
DYD3_k127_2461431_4 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007278 547.0
DYD3_k127_2461431_5 gluconolactonase K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 516.0
DYD3_k127_2461431_6 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 500.0
DYD3_k127_2461431_7 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 503.0
DYD3_k127_2461431_8 PrpF protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005048 481.0
DYD3_k127_2461431_9 Belongs to the PdxA family K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 466.0
DYD3_k127_2489507_0 Tripartite tricarboxylate transporter TctA family K07793 - - 1.599e-237 743.0
DYD3_k127_2489507_1 Aconitase family (aconitate hydratase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 611.0
DYD3_k127_2489507_12 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000000000003007 74.0
DYD3_k127_2489507_13 Putative addiction module component - - - 0.0000000000001837 73.0
DYD3_k127_2489507_2 glycolate oxidase subunit GlcD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 502.0
DYD3_k127_2489507_3 Belongs to the TPP enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 490.0
DYD3_k127_2489507_4 Ketopantoate reductase PanE/ApbA C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007297 432.0
DYD3_k127_2489507_5 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 367.0
DYD3_k127_2489507_6 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009457 293.0
DYD3_k127_2489507_7 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate - - - 0.00000000000000000000000000000000000000000000000000000001354 203.0
DYD3_k127_2489507_8 Cyclin-dependent kinase inhibitor 3 (CDKN3) - - - 0.0000000000000000000000000000000000000000000002031 172.0
DYD3_k127_2489507_9 Tripartite tricarboxylate transporter TctB family K07794 - - 0.000000000000000000000000000000000000004011 151.0
DYD3_k127_2497851_0 Adenylate cyclase - - - 6.801e-203 647.0
DYD3_k127_2497851_1 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000000000000000914 203.0
DYD3_k127_2497851_2 Oxidoreductase family, C-terminal alpha/beta domain K19181 - 1.1.1.292 0.000000000000000000000000000000000000000000001864 177.0
DYD3_k127_2497851_3 - - - - 0.00000000000000000000000000000000000000000003786 166.0
DYD3_k127_2497851_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000001438 155.0
DYD3_k127_2497851_5 bacterial OsmY and nodulation domain - - - 0.0000000000000004423 86.0
DYD3_k127_2516737_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 489.0
DYD3_k127_2516737_1 Belongs to the TPP enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007951 484.0
DYD3_k127_2516737_10 TRAP-type C4-dicarboxylate transport system, large permease K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004017 277.0
DYD3_k127_2516737_11 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000001315 250.0
DYD3_k127_2516737_12 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000006781 246.0
DYD3_k127_2516737_13 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000005371 216.0
DYD3_k127_2516737_14 Endoribonuclease L-PSP K09021 - - 0.00000000000000000000000000000000000000000000000000007554 190.0
DYD3_k127_2516737_15 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000002128 199.0
DYD3_k127_2516737_16 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000002521 135.0
DYD3_k127_2516737_17 Domain of unknown function (DUF296) K06934 - - 0.0000000000000000008412 99.0
DYD3_k127_2516737_18 May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation K09023 - - 0.00000000000000008766 82.0
DYD3_k127_2516737_19 - - - - 0.0000000000003496 72.0
DYD3_k127_2516737_2 FMN-dependent dehydrogenase K00101,K15054 - 1.1.2.3,1.1.99.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009014 458.0
DYD3_k127_2516737_20 C4-dicarboxylate ABC transporter permease K11689 - - 0.0000009996 59.0
DYD3_k127_2516737_3 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 402.0
DYD3_k127_2516737_4 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 396.0
DYD3_k127_2516737_5 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 381.0
DYD3_k127_2516737_6 ATPases associated with a variety of cellular activities K02028,K02029,K09972 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008394 374.0
DYD3_k127_2516737_7 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 375.0
DYD3_k127_2516737_8 acid transport system permease K09970 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 359.0
DYD3_k127_2516737_9 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 342.0
DYD3_k127_2517562_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 6.071e-301 933.0
DYD3_k127_2517562_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 1.028e-224 707.0
DYD3_k127_2517562_10 GTP cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 314.0
DYD3_k127_2517562_11 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 302.0
DYD3_k127_2517562_12 Binding-protein-dependent transport system inner membrane component K02042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 303.0
DYD3_k127_2517562_13 Binding-protein-dependent transport system inner membrane component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 301.0
DYD3_k127_2517562_14 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000392 263.0
DYD3_k127_2517562_15 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000002289 224.0
DYD3_k127_2517562_16 Aspartyl protease K06985 - - 0.0000000000000000000000000000000000000000000000000000002119 207.0
DYD3_k127_2517562_17 Rdx family K07401 - - 0.0000000000000000000000000000000004636 147.0
DYD3_k127_2517562_18 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000001056 109.0
DYD3_k127_2517562_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 2.617e-216 676.0
DYD3_k127_2517562_3 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381 - 1.8.1.2 4.195e-200 631.0
DYD3_k127_2517562_4 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006798 556.0
DYD3_k127_2517562_5 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 507.0
DYD3_k127_2517562_6 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 457.0
DYD3_k127_2517562_7 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 423.0
DYD3_k127_2517562_8 Bacterial extracellular solute-binding proteins, family 3 K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 374.0
DYD3_k127_2517562_9 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 336.0
DYD3_k127_2546618_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 8.284e-294 922.0
DYD3_k127_2546618_1 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K00819 - 2.6.1.13 5.145e-232 738.0
DYD3_k127_2546618_10 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000001337 236.0
DYD3_k127_2546618_11 Domain of unknown function (DUF1992) - - - 0.000000000000000000000000000000000003378 141.0
DYD3_k127_2546618_2 Aldehyde dehydrogenase family K00128 - 1.2.1.3 4.147e-221 697.0
DYD3_k127_2546618_3 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 481.0
DYD3_k127_2546618_4 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 374.0
DYD3_k127_2546618_5 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 350.0
DYD3_k127_2546618_6 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 326.0
DYD3_k127_2546618_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009562 284.0
DYD3_k127_2546618_8 LemA Family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002003 260.0
DYD3_k127_2546618_9 serine threonine protein kinase K08282 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000059 267.0
DYD3_k127_2571775_0 COG1042 Acyl-CoA synthetase (NDP forming) - - - 4.782e-211 677.0
DYD3_k127_2571775_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 562.0
DYD3_k127_2571775_2 PFAM MmgE PrpD family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 485.0
DYD3_k127_2571775_3 MmgE/PrpD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 416.0
DYD3_k127_2634785_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1135.0
DYD3_k127_2634785_1 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 2.043e-294 942.0
DYD3_k127_2634785_10 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000003578 155.0
DYD3_k127_2634785_11 membrane K15977 - - 0.00000000000000000000000000000001737 136.0
DYD3_k127_2634785_12 MAATS-type transcriptional repressor, C-terminal region K03577 GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042493,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000002484 114.0
DYD3_k127_2634785_2 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 5.985e-290 900.0
DYD3_k127_2634785_3 PFAM aminotransferase, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 476.0
DYD3_k127_2634785_4 Putative aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 351.0
DYD3_k127_2634785_5 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 318.0
DYD3_k127_2634785_6 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 308.0
DYD3_k127_2634785_7 PFAM regulatory protein AsnC Lrp family K03719 GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042221,GO:0043200,GO:0043565,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901698,GO:1901700,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000002904 215.0
DYD3_k127_2634785_8 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000001583 198.0
DYD3_k127_2634785_9 Belongs to the phosphoglycerate mutase family K15634 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000001343 198.0
DYD3_k127_2664065_0 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 365.0
DYD3_k127_2664065_1 Belongs to the helicase family. UvrD subfamily K10742 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001084 278.0
DYD3_k127_2664065_2 Peptidase_C39 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000005131 234.0
DYD3_k127_2664065_3 Restriction endonuclease K07448 - - 0.00000000000000000000000003488 112.0
DYD3_k127_2664065_4 - - - - 0.00000000000000000008501 94.0
DYD3_k127_2664065_5 PFAM SnoaL-like polyketide cyclase - - - 0.0000000000004148 81.0
DYD3_k127_2664065_6 SnoaL-like polyketide cyclase - - - 0.0001429 53.0
DYD3_k127_271548_0 TIGRFAM filamentous hemagglutinin family N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000615 345.0
DYD3_k127_271548_1 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000003164 217.0
DYD3_k127_271548_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000007242 201.0
DYD3_k127_271548_3 Histidine kinase - - - 0.000000000000000000000000000000000000000005716 179.0
DYD3_k127_271548_4 Histidine kinase - - - 0.00000000000000000000000000000000000001713 168.0
DYD3_k127_271548_5 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000007865 149.0
DYD3_k127_271548_6 Domain of unknown function (DUF4410) - - - 0.00000000000000000000000000000000000008684 152.0
DYD3_k127_271548_7 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000495 142.0
DYD3_k127_271548_8 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000000000000000000000004912 104.0
DYD3_k127_271548_9 COG0515 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000007257 68.0
DYD3_k127_2728337_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1312.0
DYD3_k127_2728337_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 4.458e-210 658.0
DYD3_k127_2728337_10 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 289.0
DYD3_k127_2728337_11 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000007052 242.0
DYD3_k127_2728337_12 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000000000000000000000000000007107 224.0
DYD3_k127_2728337_13 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000000000000000002495 210.0
DYD3_k127_2728337_14 PFAM Cold-shock protein, DNA-binding K03704 - - 0.00000000000000000000000002361 111.0
DYD3_k127_2728337_15 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000000002999 95.0
DYD3_k127_2728337_16 COG0840 Methyl-accepting chemotaxis protein - - - 0.000000000000000001044 100.0
DYD3_k127_2728337_17 Protein of unknown function (DUF721) - - - 0.0000002443 58.0
DYD3_k127_2728337_18 - - - - 0.000001612 51.0
DYD3_k127_2728337_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004114 554.0
DYD3_k127_2728337_3 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 530.0
DYD3_k127_2728337_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005072 473.0
DYD3_k127_2728337_5 Protein of unknown function (DUF815) K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 391.0
DYD3_k127_2728337_6 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 389.0
DYD3_k127_2728337_7 Peptidase family M23 K08259 - 3.4.24.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 362.0
DYD3_k127_2728337_8 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 321.0
DYD3_k127_2728337_9 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 302.0
DYD3_k127_2772864_0 AMP-dependent synthetase - - - 0.0 1092.0
DYD3_k127_2772864_1 acyl-CoA dehydrogenase K06445 - - 8.132e-313 978.0
DYD3_k127_2772864_10 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003998 410.0
DYD3_k127_2772864_11 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 405.0
DYD3_k127_2772864_12 2Fe-2S iron-sulfur cluster binding domain K00245 - 1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009589 391.0
DYD3_k127_2772864_13 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004603 370.0
DYD3_k127_2772864_14 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005888 361.0
DYD3_k127_2772864_15 GMP synthase (glutamine-hydrolyzing) activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 300.0
DYD3_k127_2772864_16 formate dehydrogenase K00127 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 292.0
DYD3_k127_2772864_17 TRAP transporter T-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 290.0
DYD3_k127_2772864_18 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003555 253.0
DYD3_k127_2772864_19 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000001395 241.0
DYD3_k127_2772864_2 Fumarate reductase flavoprotein C-term K00244 - 1.3.5.4 9.251e-280 870.0
DYD3_k127_2772864_20 Belongs to the HpcH HpaI aldolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001708 239.0
DYD3_k127_2772864_21 Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane K00247 - - 0.000000000000000000000000000000000000000009226 163.0
DYD3_k127_2772864_22 Fumarate reductase subunit C K00246 - - 0.000000000000000000000000000000005766 132.0
DYD3_k127_2772864_23 - - - - 0.0000000000000000000009293 102.0
DYD3_k127_2772864_24 - - - - 0.000000000000000000002045 100.0
DYD3_k127_2772864_25 - - - - 0.00000000000000000004235 94.0
DYD3_k127_2772864_26 Enoyl-CoA hydratase K15866 - 5.3.3.18 0.000000000000006748 76.0
DYD3_k127_2772864_27 Cupin 2, conserved barrel domain protein - - - 0.0002844 47.0
DYD3_k127_2772864_3 Acyl-CoA dehydrogenase N terminal K20035 - - 6.147e-232 731.0
DYD3_k127_2772864_4 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.153e-226 707.0
DYD3_k127_2772864_5 Fumarase C C-terminus K01744 - 4.3.1.1 3.225e-221 694.0
DYD3_k127_2772864_6 Bacterial transcriptional activator domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 617.0
DYD3_k127_2772864_7 PFAM Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 550.0
DYD3_k127_2772864_8 mannitol 2-dehydrogenase activity K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 494.0
DYD3_k127_2772864_9 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 433.0
DYD3_k127_2786828_0 major facilitator superfamily K03446 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 557.0
DYD3_k127_2786828_1 Mobile mystery protein B - - - 0.0000000000000000000000000000000000000000000000000000000000000003146 233.0
DYD3_k127_2786828_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000007679 230.0
DYD3_k127_2786828_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218,K03437 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000002752 209.0
DYD3_k127_2786828_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000006274 182.0
DYD3_k127_2786828_5 alpha beta - - - 0.000000000000000000000000000000000000001189 157.0
DYD3_k127_2786828_6 Mobile mystery protein A - - - 0.000000000000000000000000000001341 126.0
DYD3_k127_2786828_7 taurine catabolism dioxygenase K03119,K06912 - 1.14.11.17 0.0000000000000000000000002149 107.0
DYD3_k127_2786828_8 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.0000000000000000000003276 106.0
DYD3_k127_2786828_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07104 - 1.13.11.2 0.000000000000000006451 93.0
DYD3_k127_2814652_0 TIGRFAM ATP-dependent Clp protease ATP-binding subunit clpA K03694 - - 0.0 1203.0
DYD3_k127_2814652_1 SNARE associated Golgi protein - - - 0.0 1072.0
DYD3_k127_2814652_10 Belongs to the UPF0276 family K09930 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 406.0
DYD3_k127_2814652_11 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005707 386.0
DYD3_k127_2814652_12 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 334.0
DYD3_k127_2814652_13 Protein of unknown function, DUF547 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 316.0
DYD3_k127_2814652_14 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 296.0
DYD3_k127_2814652_15 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 307.0
DYD3_k127_2814652_16 Glycosyl transferase group 2 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 292.0
DYD3_k127_2814652_17 Putative DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006752 276.0
DYD3_k127_2814652_18 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000002457 261.0
DYD3_k127_2814652_19 DoxX K15977 - - 0.00000000000000000000000000000000000000000000000000000000000001919 225.0
DYD3_k127_2814652_2 TIGRFAM malate synthase A K01638 - 2.3.3.9 1.851e-258 806.0
DYD3_k127_2814652_20 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000003852 198.0
DYD3_k127_2814652_21 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000001588 190.0
DYD3_k127_2814652_22 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000000000000000005052 188.0
DYD3_k127_2814652_23 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000558 165.0
DYD3_k127_2814652_25 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000002248 163.0
DYD3_k127_2814652_26 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000000005338 145.0
DYD3_k127_2814652_27 Cold shock protein K03704 - - 0.00000000000000000000000000000000002018 136.0
DYD3_k127_2814652_28 Predicted integral membrane protein (DUF2282) - - - 0.00000000000000000000000000000001056 132.0
DYD3_k127_2814652_29 Cytochrome c, class I - - - 0.00000000000000000000000000106 117.0
DYD3_k127_2814652_3 Translation elongation factor K03833 - - 6.306e-196 631.0
DYD3_k127_2814652_31 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.000000000000000001035 88.0
DYD3_k127_2814652_32 OsmC-like protein - - - 0.00000000000002006 78.0
DYD3_k127_2814652_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 606.0
DYD3_k127_2814652_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 576.0
DYD3_k127_2814652_6 sulfide dehydrogenase K05301 - 1.8.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 531.0
DYD3_k127_2814652_7 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 501.0
DYD3_k127_2814652_8 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 510.0
DYD3_k127_2814652_9 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 417.0
DYD3_k127_2826157_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 602.0
DYD3_k127_2826157_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 548.0
DYD3_k127_2826157_10 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000001643 181.0
DYD3_k127_2826157_11 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000000000004543 175.0
DYD3_k127_2826157_12 TPM domain - - - 0.00000000000000000000000000001643 127.0
DYD3_k127_2826157_13 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000684 108.0
DYD3_k127_2826157_14 - - - - 0.00000000000000002132 91.0
DYD3_k127_2826157_2 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004938 443.0
DYD3_k127_2826157_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 421.0
DYD3_k127_2826157_4 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003308 346.0
DYD3_k127_2826157_5 Belongs to the selenophosphate synthase 1 family. Class I subfamily K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 331.0
DYD3_k127_2826157_6 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006017 249.0
DYD3_k127_2826157_7 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000001657 231.0
DYD3_k127_2826157_8 - - - - 0.00000000000000000000000000000000000000000000000000000005487 204.0
DYD3_k127_2826157_9 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000005757 195.0
DYD3_k127_2969991_0 Heat shock 70 kDa protein K04043 - - 1.481e-317 982.0
DYD3_k127_2969991_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.408e-268 839.0
DYD3_k127_2969991_10 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000398 284.0
DYD3_k127_2969991_11 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003661 268.0
DYD3_k127_2969991_12 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000001007 256.0
DYD3_k127_2969991_13 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000000000000000000000000000000002385 232.0
DYD3_k127_2969991_14 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000001495 229.0
DYD3_k127_2969991_15 Glutathione S-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000004186 225.0
DYD3_k127_2969991_16 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000004536 218.0
DYD3_k127_2969991_17 Macrocin-O-methyltransferase (TylF) K05303 - - 0.000000000000000000000000000000008761 143.0
DYD3_k127_2969991_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 8.129e-219 687.0
DYD3_k127_2969991_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 3.538e-195 613.0
DYD3_k127_2969991_4 Na+ dependent nucleoside transporter N-terminus K03317 GO:0003674,GO:0005215,GO:0005337,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0015858,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:1901264,GO:1901505,GO:1901642 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 527.0
DYD3_k127_2969991_5 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009032 521.0
DYD3_k127_2969991_6 TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 451.0
DYD3_k127_2969991_7 ErfK YbiS YcfS YnhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 427.0
DYD3_k127_2969991_8 PFAM TPR repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 308.0
DYD3_k127_2969991_9 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 300.0
DYD3_k127_3025389_0 AI-2E family transporter K03548 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 420.0
DYD3_k127_3025389_1 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 318.0
DYD3_k127_3025389_10 alcohol dehydrogenase K00153 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.306 0.00003901 51.0
DYD3_k127_3025389_11 Bacterial extracellular solute-binding protein K02055 - - 0.0001577 53.0
DYD3_k127_3025389_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 289.0
DYD3_k127_3025389_3 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005471 254.0
DYD3_k127_3025389_4 cell redox homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002356 250.0
DYD3_k127_3025389_5 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000006319 216.0
DYD3_k127_3025389_6 acyl-CoA dehydrogenase activity K00248,K00249 - 1.3.8.1,1.3.8.7 0.0000000000000000000000000000000000000000000001814 185.0
DYD3_k127_3025389_8 - - - - 0.00000000001984 66.0
DYD3_k127_3025389_9 - - - - 0.0000000001234 66.0
DYD3_k127_3029774_0 Bacterial DNA polymerase III alpha subunit K14162 - 2.7.7.7 0.0 1307.0
DYD3_k127_3029774_1 Cupin domain K00450 - 1.13.11.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004289 330.0
DYD3_k127_3029774_2 TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 339.0
DYD3_k127_3029774_3 NMT1-like family K07080 - - 0.00000000000000000000000000000007087 139.0
DYD3_k127_3029774_4 Unextendable partial coding region - - - 0.00000000000000001377 83.0
DYD3_k127_3054970_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1223.0
DYD3_k127_3054970_1 Periplasmic binding protein domain K01999 - - 4.235e-209 659.0
DYD3_k127_3054970_10 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000000002531 192.0
DYD3_k127_3054970_11 two-component system K02485 - - 0.00000000000000000000000000000000000000000000000000007169 195.0
DYD3_k127_3054970_12 hydrolase K07025 - - 0.00000000000000000000000000000000000000000000002187 178.0
DYD3_k127_3054970_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000527 617.0
DYD3_k127_3054970_3 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 474.0
DYD3_k127_3054970_4 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 455.0
DYD3_k127_3054970_5 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009791 376.0
DYD3_k127_3054970_6 ATPases associated with a variety of cellular activities K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 332.0
DYD3_k127_3054970_7 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 338.0
DYD3_k127_3054970_8 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 315.0
DYD3_k127_3054970_9 TIGRFAM PAS sensor protein - - - 0.0000000000000000000000000000000000000000000000000000005119 201.0
DYD3_k127_3065458_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 1.118e-319 990.0
DYD3_k127_3065458_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.471e-258 801.0
DYD3_k127_3065458_10 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 516.0
DYD3_k127_3065458_11 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 477.0
DYD3_k127_3065458_12 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 474.0
DYD3_k127_3065458_13 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 399.0
DYD3_k127_3065458_14 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 342.0
DYD3_k127_3065458_15 HpcH/HpaI aldolase/citrate lyase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 323.0
DYD3_k127_3065458_16 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 316.0
DYD3_k127_3065458_17 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000978 309.0
DYD3_k127_3065458_18 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 304.0
DYD3_k127_3065458_19 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 305.0
DYD3_k127_3065458_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 7.782e-256 797.0
DYD3_k127_3065458_20 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 290.0
DYD3_k127_3065458_21 ATPase MipZ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003541 285.0
DYD3_k127_3065458_22 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000524 284.0
DYD3_k127_3065458_23 TRAP-type C4-dicarboxylate transport system, large permease K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009869 276.0
DYD3_k127_3065458_24 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000007317 252.0
DYD3_k127_3065458_25 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000192 264.0
DYD3_k127_3065458_26 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000008942 248.0
DYD3_k127_3065458_27 Protein of unknown function (DUF3047) - - - 0.00000000000000000000000000000000000000000000000000000000000000006206 230.0
DYD3_k127_3065458_28 Bacterial transferase hexapeptide (six repeats) - - - 0.00000000000000000000000000000000000000000000000000000000000001055 221.0
DYD3_k127_3065458_29 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000001254 197.0
DYD3_k127_3065458_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 5.507e-225 706.0
DYD3_k127_3065458_30 cyclic nucleotide binding K01420 - - 0.00000000000000000000000000000000000000000000000000002128 198.0
DYD3_k127_3065458_31 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000373 193.0
DYD3_k127_3065458_32 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000000000000000000000000538 187.0
DYD3_k127_3065458_33 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000007013 177.0
DYD3_k127_3065458_34 biopolymer transport K03559 - - 0.000000000000000000000000000000000000000001036 161.0
DYD3_k127_3065458_35 Staphylococcal nuclease homologues - - - 0.0000000000000000000000000000000000002571 147.0
DYD3_k127_3065458_36 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.0000000000000000000000000000000002676 138.0
DYD3_k127_3065458_37 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000004646 133.0
DYD3_k127_3065458_38 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000001227 119.0
DYD3_k127_3065458_39 Belongs to the UPF0434 family K09791 - - 0.00000000000000000000002493 109.0
DYD3_k127_3065458_4 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 1.919e-220 698.0
DYD3_k127_3065458_40 Cupin domain - - - 0.0000000000000000000514 96.0
DYD3_k127_3065458_41 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.00000000000003712 84.0
DYD3_k127_3065458_43 - - - - 0.000000001133 68.0
DYD3_k127_3065458_44 PFAM Tripartite ATP-independent periplasmic K11689 - - 0.0000006632 58.0
DYD3_k127_3065458_5 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 1.209e-205 646.0
DYD3_k127_3065458_6 acetyl-coa acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 570.0
DYD3_k127_3065458_7 Sodium:solute symporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 583.0
DYD3_k127_3065458_8 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 542.0
DYD3_k127_3065458_9 Zinc-binding dehydrogenase K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 554.0
DYD3_k127_3101758_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1197.0
DYD3_k127_3101758_1 dna topoisomerase III K03169 - 5.99.1.2 0.0 1083.0
DYD3_k127_3101758_10 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004624 619.0
DYD3_k127_3101758_11 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005481 548.0
DYD3_k127_3101758_12 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 539.0
DYD3_k127_3101758_13 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 539.0
DYD3_k127_3101758_14 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 536.0
DYD3_k127_3101758_15 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 531.0
DYD3_k127_3101758_16 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 481.0
DYD3_k127_3101758_17 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 483.0
DYD3_k127_3101758_18 Fructose-bisphosphate aldolase class-I K01623 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 430.0
DYD3_k127_3101758_19 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 405.0
DYD3_k127_3101758_2 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 4.615e-305 945.0
DYD3_k127_3101758_20 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 397.0
DYD3_k127_3101758_21 DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 399.0
DYD3_k127_3101758_22 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 378.0
DYD3_k127_3101758_23 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 337.0
DYD3_k127_3101758_24 cobalamin synthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 337.0
DYD3_k127_3101758_25 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008293 321.0
DYD3_k127_3101758_26 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 314.0
DYD3_k127_3101758_27 PFAM Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 319.0
DYD3_k127_3101758_28 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000001086 246.0
DYD3_k127_3101758_29 rRNA small subunit methyltransferase G K03501 - 2.1.1.170 0.000000000000000000000000000000000000000000000000000000000000009628 222.0
DYD3_k127_3101758_3 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 4.704e-295 918.0
DYD3_k127_3101758_30 electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000004452 220.0
DYD3_k127_3101758_31 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000465 196.0
DYD3_k127_3101758_32 sulfite oxidase - - - 0.0000000000000000000000000000000000000000000000000001096 207.0
DYD3_k127_3101758_33 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000000000000000000000000000000000000000008488 182.0
DYD3_k127_3101758_34 AraC-like ligand binding domain - - - 0.00000000000000000000000000000000000000000000025 171.0
DYD3_k127_3101758_35 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000002287 162.0
DYD3_k127_3101758_36 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000001139 159.0
DYD3_k127_3101758_37 Domain of unknown function (DUF4390) - - - 0.0000000000000000000000000000000000000005884 163.0
DYD3_k127_3101758_38 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000000000000246 145.0
DYD3_k127_3101758_39 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000000000000000000000003962 141.0
DYD3_k127_3101758_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.932e-275 852.0
DYD3_k127_3101758_40 - - - - 0.00000000000000000000000000006029 132.0
DYD3_k127_3101758_41 Psort location Cytoplasmic, score K03522,K22432 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016627,GO:0016628,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363 1.3.1.108 0.00000000000000000004821 102.0
DYD3_k127_3101758_42 Acetyl propionyl-CoA carboxylase alpha subunit K02160 - - 0.00000000000000001564 85.0
DYD3_k127_3101758_43 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000001769 77.0
DYD3_k127_3101758_44 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000002638 81.0
DYD3_k127_3101758_45 ATP synthase I chain - - - 0.0009013 48.0
DYD3_k127_3101758_5 Histidine kinase - - - 8.292e-239 761.0
DYD3_k127_3101758_6 Tripartite tricarboxylate transporter TctA family - - - 4.024e-217 692.0
DYD3_k127_3101758_7 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 7.426e-212 672.0
DYD3_k127_3101758_8 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.019e-210 666.0
DYD3_k127_3101758_9 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 3.809e-204 645.0
DYD3_k127_3108663_0 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006542 509.0
DYD3_k127_3108663_1 metallophosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 349.0
DYD3_k127_3108663_2 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 302.0
DYD3_k127_3108663_3 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004509 261.0
DYD3_k127_3108663_4 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000005866 204.0
DYD3_k127_3108663_5 YHS domain protein - - - 0.000000000000000000000000002647 117.0
DYD3_k127_3108663_6 NMT1/THI5 like - - - 0.00000000000000000000000003784 121.0
DYD3_k127_3108663_7 Aminotransferase class-III K01845 - 5.4.3.8 0.00000000992 68.0
DYD3_k127_3152708_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 1.308e-288 904.0
DYD3_k127_3152708_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 9.121e-265 825.0
DYD3_k127_3152708_10 Psort location CytoplasmicMembrane, score 10.00 K03458 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000225 279.0
DYD3_k127_3152708_11 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003689 274.0
DYD3_k127_3152708_12 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000002937 250.0
DYD3_k127_3152708_13 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000012 221.0
DYD3_k127_3152708_14 Benzoate membrane transport protein K05782 - - 0.0000000000000000000000000000000000000000000000000000000000006444 227.0
DYD3_k127_3152708_15 Psort location CytoplasmicMembrane, score 10.00 K03458 - - 0.000000000000000000000000000000000000000000000000000000000149 215.0
DYD3_k127_3152708_16 cheY-homologous receiver domain K11443 - - 0.000000000000000000000000000000000000000000000000009246 185.0
DYD3_k127_3152708_17 Cysteine-rich motif following a subset of SET domains K07117 - - 0.00000000000000000000000000000000000000000000000004887 184.0
DYD3_k127_3152708_18 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000005313 183.0
DYD3_k127_3152708_19 Response regulator receiver - - - 0.0000000000000000000000000000000000000003109 152.0
DYD3_k127_3152708_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006142 535.0
DYD3_k127_3152708_20 Histidine kinase-like ATPase domain - - - 0.000000000000000000000000001805 124.0
DYD3_k127_3152708_21 STAS domain K04749 - - 0.000000000000000000002044 98.0
DYD3_k127_3152708_22 Flavodoxin domain K00230 - 1.3.5.3 0.0000000000000000004868 94.0
DYD3_k127_3152708_23 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.000000000000000002744 89.0
DYD3_k127_3152708_25 - - - - 0.000273 52.0
DYD3_k127_3152708_3 Psort location CytoplasmicMembrane, score 10.00 K03458 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008883 436.0
DYD3_k127_3152708_4 Psort location CytoplasmicMembrane, score 10.00 K03458 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 420.0
DYD3_k127_3152708_5 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 369.0
DYD3_k127_3152708_6 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 332.0
DYD3_k127_3152708_7 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 330.0
DYD3_k127_3152708_8 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 312.0
DYD3_k127_3152708_9 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 299.0
DYD3_k127_3154073_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 1.211e-218 694.0
DYD3_k127_3154073_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 598.0
DYD3_k127_3154073_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 429.0
DYD3_k127_3154073_3 Tyrosine recombinase xerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009776 420.0
DYD3_k127_3154073_4 mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 319.0
DYD3_k127_3154073_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000006759 221.0
DYD3_k127_3154073_6 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000001769 190.0
DYD3_k127_3154073_7 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000000000001766 169.0
DYD3_k127_3154073_8 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000000000000002841 149.0
DYD3_k127_3154073_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000000009335 122.0
DYD3_k127_3163991_0 Belongs to the CinA family - - - 6.191e-202 635.0
DYD3_k127_3163991_1 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 461.0
DYD3_k127_3163991_2 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 437.0
DYD3_k127_3163991_3 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000247 432.0
DYD3_k127_3163991_4 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000003832 286.0
DYD3_k127_3163991_5 COG2863 Cytochrome c553 - - - 0.00000000000000000000000000000000002843 141.0
DYD3_k127_3163991_6 Thiamine pyrophosphate enzyme, central domain - - - 0.00000000000000000001208 93.0
DYD3_k127_3163991_7 - - - - 0.00000000257 61.0
DYD3_k127_3163991_8 PilZ domain - - - 0.00008506 49.0
DYD3_k127_3177162_0 PFAM SNARE associated Golgi protein - - - 2.647e-230 734.0
DYD3_k127_3177162_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 591.0
DYD3_k127_3177162_10 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005824 336.0
DYD3_k127_3177162_11 VWA-like domain (DUF2201) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005766 290.0
DYD3_k127_3177162_12 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006267 268.0
DYD3_k127_3177162_13 Nudix hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000112 263.0
DYD3_k127_3177162_2 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 559.0
DYD3_k127_3177162_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 530.0
DYD3_k127_3177162_4 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 531.0
DYD3_k127_3177162_5 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 467.0
DYD3_k127_3177162_6 Branched-chain amino acid transport system permease K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 454.0
DYD3_k127_3177162_7 Branched-chain amino acid transport K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004244 401.0
DYD3_k127_3177162_8 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004059 375.0
DYD3_k127_3177162_9 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 353.0
DYD3_k127_325824_0 Berberine and berberine like - - - 3.318e-283 876.0
DYD3_k127_325824_1 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 456.0
DYD3_k127_325824_2 FAD binding domain K19189 - 1.14.13.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 366.0
DYD3_k127_325824_3 CoA-binding domain protein K09181 - - 0.00000000000000000000000000000000000003182 147.0
DYD3_k127_325824_4 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000003443 136.0
DYD3_k127_325824_5 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000003333 123.0
DYD3_k127_325824_6 Thioesterase superfamily K18700 - 3.1.2.29 0.000000000000000000000000005049 115.0
DYD3_k127_325824_7 - - - - 0.0000000000000000000001208 103.0
DYD3_k127_325824_8 - - - - 0.000007789 49.0
DYD3_k127_32774_0 CoA-binding domain protein K09181 - - 0.0 1073.0
DYD3_k127_32774_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 1.978e-263 820.0
DYD3_k127_32774_10 Hsp20/alpha crystallin family - - - 0.00000000000000000000000000000000000000000000000008764 182.0
DYD3_k127_32774_11 FixH family K09926 - - 0.000000000000000000000000000000000000000000008542 168.0
DYD3_k127_32774_12 - - - - 0.00000000000000000000000000000000002216 142.0
DYD3_k127_32774_13 FMN-dependent dehydrogenase K00101 - 1.1.2.3 0.0000000000000000000002054 98.0
DYD3_k127_32774_14 - - - - 0.00000000000000000006187 91.0
DYD3_k127_32774_15 Prokaryotic cytochrome b561 - - - 0.0000000000281 72.0
DYD3_k127_32774_16 Cytochrome c - - - 0.00000000005157 68.0
DYD3_k127_32774_17 Cbb3-type cytochrome oxidase K00407 - - 0.000000004566 59.0
DYD3_k127_32774_18 Response regulator receiver K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.00001025 54.0
DYD3_k127_32774_19 - - - - 0.0005692 43.0
DYD3_k127_32774_2 cytochrome C oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003299 607.0
DYD3_k127_32774_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 601.0
DYD3_k127_32774_4 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009353 386.0
DYD3_k127_32774_5 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 321.0
DYD3_k127_32774_6 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529 311.0
DYD3_k127_32774_7 plastoquinol--plastocyanin reductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000162 257.0
DYD3_k127_32774_8 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000002564 213.0
DYD3_k127_32774_9 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.00000000000000000000000000000000000000000000000002877 187.0
DYD3_k127_3282739_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0 1836.0
DYD3_k127_3282739_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 511.0
DYD3_k127_3282739_10 ABC transporter, periplasmic molybdate-binding protein K02020 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015098,GO:0015103,GO:0015318,GO:0015399,GO:0015405,GO:0015412,GO:0015689,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030151,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0034220,GO:0042597,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043169,GO:0043225,GO:0043492,GO:0044464,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0099133,GO:1901359 - 0.0000000000000000000000000000000000000000000000000000000000000000000000003076 255.0
DYD3_k127_3282739_11 MoaE protein K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000000000000000007938 227.0
DYD3_k127_3282739_12 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000000000000000004601 224.0
DYD3_k127_3282739_13 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000000000000000000000000003119 158.0
DYD3_k127_3282739_14 Uncharacterized ACR, COG1993 - - - 0.00000000000000000000000000002471 119.0
DYD3_k127_3282739_15 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.000000000000000000000000002273 115.0
DYD3_k127_3282739_16 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000002393 102.0
DYD3_k127_3282739_17 PFAM TOBE domain protein - - - 0.000000000000000002097 88.0
DYD3_k127_3282739_2 Bacterial extracellular solute-binding protein K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 410.0
DYD3_k127_3282739_3 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448 371.0
DYD3_k127_3282739_4 Molybdate transporter of MFS superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005855 363.0
DYD3_k127_3282739_5 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 331.0
DYD3_k127_3282739_6 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 321.0
DYD3_k127_3282739_7 ABC transporter K02018 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003489 293.0
DYD3_k127_3282739_8 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008505 284.0
DYD3_k127_3282739_9 COG2005 N-terminal domain of molybdenum-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000346 271.0
DYD3_k127_3311489_0 AsmA family K07289 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 593.0
DYD3_k127_3311489_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007473 486.0
DYD3_k127_3311489_10 Protein of unknown function, DUF481 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002295 276.0
DYD3_k127_3311489_11 - - - - 0.00000000000000000000000000000000000000000000000000000000001296 212.0
DYD3_k127_3311489_12 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000002684 214.0
DYD3_k127_3311489_13 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.0000000000000000000000000000000000000000000000000000003465 201.0
DYD3_k127_3311489_14 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000006391 193.0
DYD3_k127_3311489_15 Las17-binding protein actin regulator - - - 0.0000000000000000002735 94.0
DYD3_k127_3311489_16 - - - - 0.000000000008288 76.0
DYD3_k127_3311489_17 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00001929 46.0
DYD3_k127_3311489_2 A G-specific K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 386.0
DYD3_k127_3311489_3 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003507 369.0
DYD3_k127_3311489_4 Thioredoxin-like K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 356.0
DYD3_k127_3311489_5 Secreted protein, containing von Willebrand factor (VWF) type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006032 324.0
DYD3_k127_3311489_6 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 326.0
DYD3_k127_3311489_7 Pfam MotA TolQ ExbB proton channel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 300.0
DYD3_k127_3311489_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 304.0
DYD3_k127_3311489_9 von Willebrand factor (VWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004044 288.0
DYD3_k127_3317175_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 5.214e-290 910.0
DYD3_k127_3317175_1 Pfam Sulfatase K01133 - 3.1.6.6 1.949e-221 696.0
DYD3_k127_3317175_10 Protein of unknown function (DUF521) K09123 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000506 250.0
DYD3_k127_3317175_11 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000001032 226.0
DYD3_k127_3317175_12 Bacterial regulatory proteins, gntR family - - - 0.000000000000000000000000000000000000000000000000000000000000006989 225.0
DYD3_k127_3317175_2 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 401.0
DYD3_k127_3317175_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 328.0
DYD3_k127_3317175_4 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006154 316.0
DYD3_k127_3317175_5 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 299.0
DYD3_k127_3317175_6 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005217 295.0
DYD3_k127_3317175_7 Dehydrogenase K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000421 286.0
DYD3_k127_3317175_8 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001629 282.0
DYD3_k127_3317175_9 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002232 282.0
DYD3_k127_3330071_0 NADH Ubiquinone plastoquinone (Complex I) K12141 - - 9.405e-250 788.0
DYD3_k127_3330071_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 9.72e-215 677.0
DYD3_k127_3330071_2 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 402.0
DYD3_k127_3330071_3 hydrogenase 4 membrane K12140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006079 294.0
DYD3_k127_3330071_4 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 284.0
DYD3_k127_3332039_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1450.0
DYD3_k127_3332039_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 2.071e-207 648.0
DYD3_k127_3332039_2 response regulator K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 563.0
DYD3_k127_3332039_3 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000607 306.0
DYD3_k127_3332039_4 N-acetylmuramoyl-L-alanine amidase (Family 2) K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000003034 252.0
DYD3_k127_3332039_5 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000007295 145.0
DYD3_k127_3332039_6 KTSC domain - - - 0.000000000000001101 82.0
DYD3_k127_3332039_7 Protein of unknown function (DUF2442) - - - 0.00003406 55.0
DYD3_k127_3344096_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1230.0
DYD3_k127_3344096_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 5.832e-227 712.0
DYD3_k127_3344096_10 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 306.0
DYD3_k127_3344096_11 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 301.0
DYD3_k127_3344096_12 Belongs to the protein N5-glutamine methyltransferase family K07320 - 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001677 283.0
DYD3_k127_3344096_13 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000001374 164.0
DYD3_k127_3344096_14 Tetrahydrodipicolinate N-succinyltransferase N-terminal K00674 - 2.3.1.117 0.00000000000000000000000000000000000000001944 153.0
DYD3_k127_3344096_15 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000000000000000000000000000000843 151.0
DYD3_k127_3344096_2 DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 599.0
DYD3_k127_3344096_3 dehydrogenase, E1 component K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009443 580.0
DYD3_k127_3344096_4 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 538.0
DYD3_k127_3344096_5 twitching motility protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 473.0
DYD3_k127_3344096_6 PFAM AFG1-family ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 415.0
DYD3_k127_3344096_7 PFAM Alcohol dehydrogenase GroES domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008862 408.0
DYD3_k127_3344096_8 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 406.0
DYD3_k127_3344096_9 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 327.0
DYD3_k127_3369259_0 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008536 589.0
DYD3_k127_3369259_1 Predicted membrane protein (DUF2339) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 442.0
DYD3_k127_3369259_10 Localisation of periplasmic protein complexes K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000003607 189.0
DYD3_k127_3369259_11 unsaturated fatty acid biosynthetic process K00508 GO:0001676,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016020,GO:0016053,GO:0016213,GO:0016215,GO:0016491,GO:0016705,GO:0016717,GO:0019752,GO:0032787,GO:0042759,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:0072330,GO:1901576 1.14.19.3 0.000000000000000000000000000000000001067 149.0
DYD3_k127_3369259_12 glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000002603 147.0
DYD3_k127_3369259_13 serine-type endopeptidase activity - - - 0.00000000000000000000000000000000003053 135.0
DYD3_k127_3369259_14 Rieske-like [2Fe-2S] domain K05710 - - 0.000000000000000000000000598 108.0
DYD3_k127_3369259_16 His Kinase A (phosphoacceptor) domain - - - 0.0000000001389 71.0
DYD3_k127_3369259_2 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 422.0
DYD3_k127_3369259_3 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005749 413.0
DYD3_k127_3369259_4 Flavin-binding monooxygenase-like K07222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 388.0
DYD3_k127_3369259_5 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004487 269.0
DYD3_k127_3369259_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07032 - - 0.00000000000000000000000000000000000000000000000000000000000000005783 225.0
DYD3_k127_3369259_7 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000001477 230.0
DYD3_k127_3369259_8 Response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000009101 216.0
DYD3_k127_3369259_9 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000004163 207.0
DYD3_k127_3381124_0 binding-protein-dependent transport systems inner membrane component K02011 - - 2.196e-255 798.0
DYD3_k127_3381124_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 1.063e-209 664.0
DYD3_k127_3381124_10 Ornithine cyclodeaminase K01750 - 4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001209 272.0
DYD3_k127_3381124_11 redox protein regulator of disulfide bond formation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000011 241.0
DYD3_k127_3381124_12 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000004072 208.0
DYD3_k127_3381124_13 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000001242 213.0
DYD3_k127_3381124_14 cyclic nucleotide-binding - - - 0.0000000000000000000000000000000000000001428 157.0
DYD3_k127_3381124_15 PFAM response regulator receiver K11443 - - 0.00000000000000000000000000000006622 128.0
DYD3_k127_3381124_2 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 602.0
DYD3_k127_3381124_3 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 499.0
DYD3_k127_3381124_4 FIST N domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 456.0
DYD3_k127_3381124_5 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 466.0
DYD3_k127_3381124_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 428.0
DYD3_k127_3381124_7 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 400.0
DYD3_k127_3381124_8 (2R)-phospho-3-sulfolactate synthase (ComA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004809 336.0
DYD3_k127_3381124_9 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 314.0
DYD3_k127_3469895_0 Glycosyl hydrolase family 63 C-terminal domain - - - 0.0 1318.0
DYD3_k127_3469895_1 PFAM NADH Ubiquinone plastoquinone (complex I) - - - 2.481e-233 739.0
DYD3_k127_3469895_10 COG0656 Aldo keto reductases, related to diketogulonate reductase K06222 - 1.1.1.346 0.000000000000000000000000000000000000000000000000000000000000000002949 241.0
DYD3_k127_3469895_11 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.00000000000000000000000000000000000000000000000000000007058 208.0
DYD3_k127_3469895_12 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000001431 166.0
DYD3_k127_3469895_13 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.0000000000000000000000000000000000000000002028 160.0
DYD3_k127_3469895_14 Predicted nucleotide-binding protein containing TIR-like domain - - - 0.0000000000000000000001853 102.0
DYD3_k127_3469895_15 Iron-binding zinc finger CDGSH type K05710 - - 0.0000000000000001118 90.0
DYD3_k127_3469895_16 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000001008 75.0
DYD3_k127_3469895_17 SH3 domain - - - 0.00005221 53.0
DYD3_k127_3469895_18 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.00009942 49.0
DYD3_k127_3469895_2 Chromate Ion Transporter K07240 - - 2.532e-218 685.0
DYD3_k127_3469895_3 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 2.397e-208 656.0
DYD3_k127_3469895_4 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 455.0
DYD3_k127_3469895_5 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 392.0
DYD3_k127_3469895_6 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 366.0
DYD3_k127_3469895_7 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 294.0
DYD3_k127_3469895_8 Cache domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008795 276.0
DYD3_k127_3469895_9 chromate transport protein K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004837 258.0
DYD3_k127_3546723_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0 1021.0
DYD3_k127_3546723_1 GTP-binding protein K06207 - - 6.312e-302 937.0
DYD3_k127_3546723_2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 3.702e-258 804.0
DYD3_k127_3546723_3 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 470.0
DYD3_k127_3546723_4 ABC-type polar amino acid transport system, ATPase component K10004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 392.0
DYD3_k127_3546723_5 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 367.0
DYD3_k127_3546723_6 [2Fe-2S] binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002355 244.0
DYD3_k127_3546723_7 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000287 247.0
DYD3_k127_3546723_8 - - - - 0.0000000000000000000000000000000000002878 149.0
DYD3_k127_3602511_0 Belongs to the DegT DnrJ EryC1 family K20429 - 2.6.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 536.0
DYD3_k127_3602511_1 SEC-C Motif Domain Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004804 246.0
DYD3_k127_3602511_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000008529 209.0
DYD3_k127_3650590_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 3.404e-213 673.0
DYD3_k127_3650590_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 2.828e-195 613.0
DYD3_k127_3650590_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 553.0
DYD3_k127_3650590_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 430.0
DYD3_k127_3650590_4 Cell wall formation K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 401.0
DYD3_k127_3650590_5 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 364.0
DYD3_k127_3650590_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000006067 246.0
DYD3_k127_3650590_7 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000002485 231.0
DYD3_k127_3651212_0 Hydrolase CocE NonD family K06978 - - 3.527e-241 758.0
DYD3_k127_3651212_1 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 540.0
DYD3_k127_3651212_10 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000001469 267.0
DYD3_k127_3651212_11 Cupin 2, conserved barrel domain protein K11312 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001604 253.0
DYD3_k127_3651212_12 AraC-like ligand binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001775 226.0
DYD3_k127_3651212_13 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000002949 232.0
DYD3_k127_3651212_14 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000002837 222.0
DYD3_k127_3651212_15 Belongs to the LeuD family K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000001176 213.0
DYD3_k127_3651212_16 Catalyzes the conversion of maleate to fumarate K01799,K06033 - 4.1.1.76,5.2.1.1 0.00000000000000000000000000000000000000000000000000000005203 208.0
DYD3_k127_3651212_17 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000005932 179.0
DYD3_k127_3651212_18 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000000000000356 182.0
DYD3_k127_3651212_19 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000193 155.0
DYD3_k127_3651212_2 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 443.0
DYD3_k127_3651212_20 AraC-like ligand binding domain - - - 0.0000000000000000000000000000007578 134.0
DYD3_k127_3651212_21 Carboxymethylenebutenolidase K01061 - 3.1.1.45 0.0000000000000000000000000007222 122.0
DYD3_k127_3651212_22 Succinylglutamate desuccinylase K06987 - - 0.00000000000000000000000005987 119.0
DYD3_k127_3651212_23 AraC-like ligand binding domain - - - 0.000000000000000000005883 104.0
DYD3_k127_3651212_24 Bacterial extracellular solute-binding protein K22003 - 5.3.3.7 0.000000000000000009102 93.0
DYD3_k127_3651212_25 aconitate hydratase - - - 0.0000000000001675 72.0
DYD3_k127_3651212_3 Belongs to the DapA family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 389.0
DYD3_k127_3651212_4 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 366.0
DYD3_k127_3651212_5 Alpha/beta hydrolase of unknown function (DUF1100) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 342.0
DYD3_k127_3651212_6 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 328.0
DYD3_k127_3651212_7 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 332.0
DYD3_k127_3651212_8 Aconitase family (aconitate hydratase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 287.0
DYD3_k127_3651212_9 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001869 271.0
DYD3_k127_3667084_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 2494.0
DYD3_k127_3667084_1 Glycoside hydrolase 15-related - - - 1.014e-206 672.0
DYD3_k127_3667084_10 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000000000000000556 212.0
DYD3_k127_3667084_11 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K00851,K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.7.1.12,3.1.1.31 0.00000000000000000000000000000000000000000000000003078 190.0
DYD3_k127_3667084_12 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000007446 179.0
DYD3_k127_3667084_13 - - - - 0.0000000000000000000003 102.0
DYD3_k127_3667084_16 SMART Transport-associated and nodulation - - - 0.00003667 52.0
DYD3_k127_3667084_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009817 553.0
DYD3_k127_3667084_3 cytochrome C peroxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 528.0
DYD3_k127_3667084_4 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 416.0
DYD3_k127_3667084_5 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 407.0
DYD3_k127_3667084_6 Protein of unknown function (DUF3365) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 405.0
DYD3_k127_3667084_7 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008228 391.0
DYD3_k127_3667084_8 acetylesterase activity K01046 - 3.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000152 235.0
DYD3_k127_3667084_9 NADPH quinone - - - 0.000000000000000000000000000000000000000000000000000000000000222 226.0
DYD3_k127_3684994_0 succinate dehydrogenase fumarate reductase, flavoprotein subunit K00394 - 1.8.99.2 0.0 1046.0
DYD3_k127_3684994_1 FtsX-like permease family K02004 - - 2.301e-248 792.0
DYD3_k127_3684994_10 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004226 288.0
DYD3_k127_3684994_11 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001079 272.0
DYD3_k127_3684994_12 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000161 267.0
DYD3_k127_3684994_13 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008414 254.0
DYD3_k127_3684994_14 reductase, beta subunit K00395 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000000000000000004282 231.0
DYD3_k127_3684994_15 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000000000000000000000003111 205.0
DYD3_k127_3684994_16 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000000000000000006661 199.0
DYD3_k127_3684994_17 - - - - 0.000000000000000008642 88.0
DYD3_k127_3684994_2 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 2.511e-221 691.0
DYD3_k127_3684994_3 PFAM Rhodanese domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 617.0
DYD3_k127_3684994_4 Glucose sorbosone K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 537.0
DYD3_k127_3684994_5 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 523.0
DYD3_k127_3684994_6 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 405.0
DYD3_k127_3684994_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004711 321.0
DYD3_k127_3684994_8 Belongs to the SUA5 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 295.0
DYD3_k127_3684994_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 289.0
DYD3_k127_3696617_0 catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-acp K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 7.178e-203 641.0
DYD3_k127_3696617_1 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 5.054e-200 630.0
DYD3_k127_3696617_10 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 375.0
DYD3_k127_3696617_11 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 363.0
DYD3_k127_3696617_12 Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 352.0
DYD3_k127_3696617_13 type I secretion membrane fusion K02022,K12537 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 331.0
DYD3_k127_3696617_14 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 322.0
DYD3_k127_3696617_15 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 309.0
DYD3_k127_3696617_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002282 280.0
DYD3_k127_3696617_17 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000241 260.0
DYD3_k127_3696617_18 PFAM Aminotransferase, class IV K02619 - 4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000002476 266.0
DYD3_k127_3696617_19 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000001551 243.0
DYD3_k127_3696617_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 599.0
DYD3_k127_3696617_20 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000005122 241.0
DYD3_k127_3696617_21 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000005233 243.0
DYD3_k127_3696617_22 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000001033 209.0
DYD3_k127_3696617_23 ankyrin repeat K06867 - - 0.000000000000000000000000000000000000000001293 166.0
DYD3_k127_3696617_24 HNH endonuclease - - - 0.0000000000000000000000000000000000000000163 161.0
DYD3_k127_3696617_25 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000007596 136.0
DYD3_k127_3696617_26 Protein of unknown function (DUF1178) - - - 0.000000000000000000000000000000000009511 143.0
DYD3_k127_3696617_27 Universal stress protein family - - - 0.0000000000000000000000000000000001207 137.0
DYD3_k127_3696617_28 Endonuclease Exonuclease Phosphatase - - - 0.0000000000000000000000000000000003822 151.0
DYD3_k127_3696617_29 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000009791 136.0
DYD3_k127_3696617_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 522.0
DYD3_k127_3696617_30 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000002281 136.0
DYD3_k127_3696617_31 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000001764 111.0
DYD3_k127_3696617_32 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000001868 119.0
DYD3_k127_3696617_33 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.00000000000000000001475 91.0
DYD3_k127_3696617_34 - - - - 0.00000000002416 67.0
DYD3_k127_3696617_4 Type I secretion system K16299 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 514.0
DYD3_k127_3696617_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 487.0
DYD3_k127_3696617_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004661 470.0
DYD3_k127_3696617_7 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 441.0
DYD3_k127_3696617_8 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 396.0
DYD3_k127_3696617_9 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 386.0
DYD3_k127_3723260_0 Molecular chaperone. Has ATPase activity K04079 - - 3.296e-308 955.0
DYD3_k127_3723260_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 8.513e-214 703.0
DYD3_k127_3723260_10 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 301.0
DYD3_k127_3723260_11 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001628 275.0
DYD3_k127_3723260_12 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002911 255.0
DYD3_k127_3723260_13 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000203 258.0
DYD3_k127_3723260_14 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000000000000001042 223.0
DYD3_k127_3723260_15 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000000003352 234.0
DYD3_k127_3723260_16 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000002518 214.0
DYD3_k127_3723260_17 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000001196 208.0
DYD3_k127_3723260_18 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000007888 203.0
DYD3_k127_3723260_19 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000005957 203.0
DYD3_k127_3723260_2 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 544.0
DYD3_k127_3723260_20 - - - - 0.0000000000000000007464 88.0
DYD3_k127_3723260_21 - - - - 0.00000000000000000236 89.0
DYD3_k127_3723260_22 Tripartite tricarboxylate transporter TctB family - - - 0.00000000338 64.0
DYD3_k127_3723260_3 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 486.0
DYD3_k127_3723260_4 PFAM Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 482.0
DYD3_k127_3723260_5 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 351.0
DYD3_k127_3723260_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009707 359.0
DYD3_k127_3723260_7 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 342.0
DYD3_k127_3723260_8 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 342.0
DYD3_k127_3723260_9 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 316.0
DYD3_k127_373009_0 FAD dependent oxidoreductase - - - 1.362e-207 656.0
DYD3_k127_373009_1 MmgE PrpD family protein - - - 6.983e-202 643.0
DYD3_k127_373009_2 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 438.0
DYD3_k127_373009_3 MmgE PrpD family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 410.0
DYD3_k127_373009_4 2-methylcitrate dehydratase activity K01720 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009268,GO:0009628,GO:0009987,GO:0010447,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019679,GO:0019752,GO:0030312,GO:0032787,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046459,GO:0047547,GO:0050896,GO:0071704,GO:0071944,GO:0072329,GO:1901575 4.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003561 353.0
DYD3_k127_373009_5 Saccharopine dehydrogenase K00290 - 1.5.1.7 0.0000000446 65.0
DYD3_k127_3736221_0 homoserine dehydrogenase K00003 - 1.1.1.3 2.875e-208 655.0
DYD3_k127_3736221_1 Aminotransferase K14261 - - 1.046e-204 642.0
DYD3_k127_3736221_10 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 314.0
DYD3_k127_3736221_11 Carbon-nitrogen hydrolase K11206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 299.0
DYD3_k127_3736221_12 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000002825 265.0
DYD3_k127_3736221_13 COG0739 Membrane proteins related to metalloendopeptidases K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007444 254.0
DYD3_k127_3736221_14 PFAM regulatory protein, MerR - - - 0.000000000000000000000000000000000000000000000001683 176.0
DYD3_k127_3736221_15 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.0000000000000000000000000000000000000000000006867 174.0
DYD3_k127_3736221_16 NIPSNAP - - - 0.000000000000000000000000000000000000002141 154.0
DYD3_k127_3736221_17 protein possibly involved in utilization of glycolate and propanediol - - - 0.0000000000000000000000000000000000006803 145.0
DYD3_k127_3736221_2 PFAM transglutaminase domain protein K22452 - 2.3.2.13 5.68e-198 636.0
DYD3_k127_3736221_20 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000000000001829 121.0
DYD3_k127_3736221_22 dehydrogenase - - - 0.0001884 47.0
DYD3_k127_3736221_3 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 569.0
DYD3_k127_3736221_4 Response regulator receiver modulated diguanylate cyclase phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 594.0
DYD3_k127_3736221_5 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 524.0
DYD3_k127_3736221_6 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 503.0
DYD3_k127_3736221_7 PFAM ATPase associated with various cellular activities AAA_3 K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 413.0
DYD3_k127_3736221_8 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 370.0
DYD3_k127_3736221_9 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 336.0
DYD3_k127_3741446_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 6.057e-318 990.0
DYD3_k127_3741446_1 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 574.0
DYD3_k127_3741446_10 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002724 241.0
DYD3_k127_3741446_11 PFAM DGPFAETKE family protein - - - 0.0000000000000000000000000000000000000000000000000000000000001461 217.0
DYD3_k127_3741446_12 deoxyhypusine monooxygenase activity K05384,K05386 - - 0.000000000000000000000000000000000000000000000002973 187.0
DYD3_k127_3741446_13 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.00000000000000000000000000000000000000000000003355 175.0
DYD3_k127_3741446_14 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000152 106.0
DYD3_k127_3741446_15 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000001223 90.0
DYD3_k127_3741446_16 Redoxin K03386 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0020012,GO:0030682,GO:0042221,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0070887,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000002321 50.0
DYD3_k127_3741446_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 522.0
DYD3_k127_3741446_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 497.0
DYD3_k127_3741446_4 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 478.0
DYD3_k127_3741446_5 Transcriptional regulator K03576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 428.0
DYD3_k127_3741446_6 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 370.0
DYD3_k127_3741446_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003038 280.0
DYD3_k127_3741446_8 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007531 271.0
DYD3_k127_3741446_9 Glyoxalase-like domain K04750 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003272 249.0
DYD3_k127_3827929_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 454.0
DYD3_k127_3827929_1 Thiopurine S-methyltransferase (TPMT) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 285.0
DYD3_k127_3827929_2 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001769 274.0
DYD3_k127_3827929_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000001712 241.0
DYD3_k127_3827929_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000001073 219.0
DYD3_k127_3827929_5 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000000005651 200.0
DYD3_k127_3827929_7 helix_turn_helix, Lux Regulon - - - 0.0000000001514 64.0
DYD3_k127_3838087_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1263.0
DYD3_k127_3838087_1 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 6.438e-319 981.0
DYD3_k127_3838087_10 PFAM permease YjgP YjgQ family protein K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 385.0
DYD3_k127_3838087_11 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 305.0
DYD3_k127_3838087_12 TIGRFAM Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000001221 273.0
DYD3_k127_3838087_13 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000002205 239.0
DYD3_k127_3838087_14 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000000000003021 208.0
DYD3_k127_3838087_15 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000000000000003747 206.0
DYD3_k127_3838087_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000004838 200.0
DYD3_k127_3838087_17 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.000000000000000000000000000000000000000000000000002766 186.0
DYD3_k127_3838087_18 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000007729 190.0
DYD3_k127_3838087_19 - - - - 0.000000000000000000000000000000000000000000007686 173.0
DYD3_k127_3838087_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 8.497e-209 659.0
DYD3_k127_3838087_20 - - - - 0.00000000000000000000000000000000003095 138.0
DYD3_k127_3838087_21 - - - - 0.0000000000000000000000000000000005277 134.0
DYD3_k127_3838087_22 RDD family - - - 0.000000000000000000000000000002595 125.0
DYD3_k127_3838087_23 Protein of unknown function (DUF3106) - - - 0.000000000000000000000000597 110.0
DYD3_k127_3838087_24 - - - - 0.00000000000000000000000523 113.0
DYD3_k127_3838087_25 Protein of unknown function (DUF3619) - - - 0.00000000000008009 76.0
DYD3_k127_3838087_3 Radical SAM K01012 - 2.8.1.6 8.397e-196 615.0
DYD3_k127_3838087_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 542.0
DYD3_k127_3838087_5 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 499.0
DYD3_k127_3838087_6 SMART Elongator protein 3 MiaB NifB K09711 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 503.0
DYD3_k127_3838087_7 lipoate-protein ligase A K03800 - 6.3.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 475.0
DYD3_k127_3838087_8 Permease, YjgP YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 422.0
DYD3_k127_3838087_9 geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 398.0
DYD3_k127_3918514_0 Cation transport ATPase (P-type) - - - 0.0 1029.0
DYD3_k127_3918514_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 3.666e-244 777.0
DYD3_k127_3918514_10 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 307.0
DYD3_k127_3918514_11 protocatechuate 3,4-dioxygenase, beta subunit' K03381 - 1.13.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000669 329.0
DYD3_k127_3918514_12 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002803 278.0
DYD3_k127_3918514_13 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002571 239.0
DYD3_k127_3918514_14 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000007397 234.0
DYD3_k127_3918514_15 Domain of unknown function (DUF2520) - - - 0.0000000000000000000000000000000000000000000000000000000000000000004844 243.0
DYD3_k127_3918514_16 Phospholipid N-methyltransferase - - - 0.000000000000000000000000000000000000000000000000001517 192.0
DYD3_k127_3918514_17 Belongs to the UPF0255 family - - - 0.000000000000000000000000000000000000000000000006083 186.0
DYD3_k127_3918514_18 fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000006754 163.0
DYD3_k127_3918514_19 S4 RNA-binding domain - - - 0.00000000000000000000000000000000000000004179 156.0
DYD3_k127_3918514_2 Protein of unknown function (DUF4080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 608.0
DYD3_k127_3918514_20 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000001549 146.0
DYD3_k127_3918514_21 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000000000000004488 135.0
DYD3_k127_3918514_22 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000002954 134.0
DYD3_k127_3918514_23 OsmC-like protein - - - 0.000000000000000000000000000000000453 136.0
DYD3_k127_3918514_24 NMT1-like family K02051,K15553 - - 0.000000000000000000000000000000004542 141.0
DYD3_k127_3918514_25 CbiX K03795 - 4.99.1.3 0.0000000000000000000000000000005391 126.0
DYD3_k127_3918514_26 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000002233 130.0
DYD3_k127_3918514_27 - - - - 0.0000000000000000000000000003421 130.0
DYD3_k127_3918514_28 Glycine-zipper domain - - - 0.0000000000000000000000000009478 117.0
DYD3_k127_3918514_29 - - - - 0.0000000000000000000000009243 106.0
DYD3_k127_3918514_3 PhoD-like phosphatase, N-terminal domain K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004056 552.0
DYD3_k127_3918514_30 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000000002695 93.0
DYD3_k127_3918514_31 - - - - 0.000000008896 66.0
DYD3_k127_3918514_33 Phosphate starvation-inducible protein, PSIF - - - 0.00008467 50.0
DYD3_k127_3918514_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 498.0
DYD3_k127_3918514_5 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 479.0
DYD3_k127_3918514_6 PFAM histone deacetylase superfamily K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008029 407.0
DYD3_k127_3918514_7 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004592 398.0
DYD3_k127_3918514_8 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004906 381.0
DYD3_k127_3918514_9 luciferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 340.0
DYD3_k127_3946706_0 Belongs to the IlvD Edd family - - - 1.355e-275 856.0
DYD3_k127_3946706_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002253 385.0
DYD3_k127_3946706_2 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000001757 220.0
DYD3_k127_3946706_3 SapC - - - 0.0000000000000000000000000000000000000003104 160.0
DYD3_k127_3946706_4 MmgE PrpD family protein - - - 0.00000000000000000000000000000000000000522 160.0
DYD3_k127_3946706_5 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000005977 74.0
DYD3_k127_3960237_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.369e-261 815.0
DYD3_k127_3960237_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 7.404e-260 809.0
DYD3_k127_3960237_2 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 361.0
DYD3_k127_3960237_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003312 339.0
DYD3_k127_3960237_4 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 290.0
DYD3_k127_3960237_5 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002453 287.0
DYD3_k127_3960237_6 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004466 277.0
DYD3_k127_3960237_7 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008752 272.0
DYD3_k127_3960237_8 - - - - 0.0000000000000000000000000000000000000000000000008798 184.0
DYD3_k127_3960237_9 Protein of unknown function (DUF2905) - - - 0.000000000000000000000004061 102.0
DYD3_k127_3974796_0 Protein conserved in bacteria K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 492.0
DYD3_k127_3974796_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00018,K00058,K03778 - 1.1.1.28,1.1.1.29,1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 354.0
DYD3_k127_3974796_10 Tripartite tricarboxylate transporter TctB family - - - 0.0008605 49.0
DYD3_k127_3974796_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004653 295.0
DYD3_k127_3974796_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002633 278.0
DYD3_k127_3974796_4 Carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000248 225.0
DYD3_k127_3974796_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000009584 200.0
DYD3_k127_3974796_6 - - - - 0.0000000000000000000000000000000000000002112 157.0
DYD3_k127_3974796_7 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000001048 121.0
DYD3_k127_3974796_8 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000003545 86.0
DYD3_k127_3974796_9 hydroperoxide reductase activity K07486 - - 0.0000000001926 70.0
DYD3_k127_4002433_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 3.386e-273 850.0
DYD3_k127_4002433_1 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.75e-236 739.0
DYD3_k127_4002433_10 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009465 319.0
DYD3_k127_4002433_11 Methyltransferase fkbm family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006143 315.0
DYD3_k127_4002433_12 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 318.0
DYD3_k127_4002433_13 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003491 303.0
DYD3_k127_4002433_14 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002538 274.0
DYD3_k127_4002433_15 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005736 250.0
DYD3_k127_4002433_16 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007636 253.0
DYD3_k127_4002433_17 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000001766 216.0
DYD3_k127_4002433_18 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000004219 218.0
DYD3_k127_4002433_19 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000742 203.0
DYD3_k127_4002433_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004038 513.0
DYD3_k127_4002433_20 Cytochrome c K17223 - - 0.000000000000000000000000000000000000000000000000000003232 199.0
DYD3_k127_4002433_21 sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000000000573 160.0
DYD3_k127_4002433_22 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000001204 151.0
DYD3_k127_4002433_23 O-methyltransferase activity K05303 - - 0.000000000000000000000000000000000001685 146.0
DYD3_k127_4002433_24 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000000000000000000000000000005926 129.0
DYD3_k127_4002433_25 Sulfurtransferase TusA K04085 - - 0.00000000000000000000000000000008342 124.0
DYD3_k127_4002433_26 Sulphur oxidation protein SoxZ K17227 - - 0.00000000000000000000000000003715 119.0
DYD3_k127_4002433_27 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000000000000000000000008838 118.0
DYD3_k127_4002433_28 - - - - 0.00000000000000000000001998 102.0
DYD3_k127_4002433_29 - - - - 0.000000000000000000001705 103.0
DYD3_k127_4002433_3 peptidase m48, ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 484.0
DYD3_k127_4002433_30 FAD dependent oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000002117 61.0
DYD3_k127_4002433_4 repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 462.0
DYD3_k127_4002433_5 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 423.0
DYD3_k127_4002433_6 tpr domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 407.0
DYD3_k127_4002433_7 glycosyl transferase family 8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006362 353.0
DYD3_k127_4002433_8 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 375.0
DYD3_k127_4002433_9 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 357.0
DYD3_k127_4012986_0 - - - - 1.765e-277 870.0
DYD3_k127_4012986_1 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 2.068e-272 849.0
DYD3_k127_4012986_10 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007445 394.0
DYD3_k127_4012986_11 Belongs to the LDH2 MDH2 oxidoreductase family K13609,K16844 - 1.1.1.338,1.5.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 373.0
DYD3_k127_4012986_12 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 367.0
DYD3_k127_4012986_13 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006103 357.0
DYD3_k127_4012986_14 Nitroreductase family K19286 - 1.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 335.0
DYD3_k127_4012986_15 PFAM Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 326.0
DYD3_k127_4012986_16 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000548 318.0
DYD3_k127_4012986_17 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 310.0
DYD3_k127_4012986_18 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 299.0
DYD3_k127_4012986_19 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 291.0
DYD3_k127_4012986_2 TRAP transporter, 4TM 12TM fusion protein - - - 6.831e-219 697.0
DYD3_k127_4012986_20 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000192 280.0
DYD3_k127_4012986_21 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003057 275.0
DYD3_k127_4012986_22 Ankyrin repeats (3 copies) K06867 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004859 266.0
DYD3_k127_4012986_23 PFAM Nitrile hydratase alpha K01721,K20762 - 3.5.5.8,4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000009417 249.0
DYD3_k127_4012986_24 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000001423 224.0
DYD3_k127_4012986_25 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000000005604 199.0
DYD3_k127_4012986_26 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000000000000000003199 189.0
DYD3_k127_4012986_27 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000002053 184.0
DYD3_k127_4012986_28 Acyl-CoA dehydrogenase, N-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.0000000000000000000000000000000000000000000005194 181.0
DYD3_k127_4012986_29 PFAM acyl-CoA dehydrogenase domain protein - - - 0.00000000000000000000000000000000000000002882 168.0
DYD3_k127_4012986_3 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K16846 - 4.4.1.24 2.185e-211 661.0
DYD3_k127_4012986_30 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.0000000000000000000000000000000000000001669 156.0
DYD3_k127_4012986_31 PFAM Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.000000000000000000000000000000000000002582 158.0
DYD3_k127_4012986_32 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.000000000000000000000000000000000005059 140.0
DYD3_k127_4012986_33 PFAM (2R)-phospho-3-sulfolactate synthase ComA K08097 - 4.4.1.19 0.0000000000000000000000000000000002226 143.0
DYD3_k127_4012986_34 SAF K16845 - 4.4.1.24 0.0000000000000000000000000000000003071 144.0
DYD3_k127_4012986_35 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000001577 126.0
DYD3_k127_4012986_36 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.000000000000000000000000000003099 123.0
DYD3_k127_4012986_38 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.000000000000000428 80.0
DYD3_k127_4012986_39 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.000000000000009139 81.0
DYD3_k127_4012986_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 3.364e-208 662.0
DYD3_k127_4012986_40 Domain of unknown function (DUF1732) - - - 0.0000000000000128 74.0
DYD3_k127_4012986_41 Cupin K01569 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0033609,GO:0043436,GO:0043648,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0046564,GO:0071704 4.1.1.2 0.0007388 49.0
DYD3_k127_4012986_5 PFAM type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 594.0
DYD3_k127_4012986_6 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01781 - 5.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 574.0
DYD3_k127_4012986_7 Domain of unknown function DUF21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 511.0
DYD3_k127_4012986_8 Fe-S type, tartrate fumarate subfamily, alpha subunit K03779 - 4.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 463.0
DYD3_k127_4012986_9 TRAP transporter, solute receptor (TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 392.0
DYD3_k127_4054454_0 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005096 350.0
DYD3_k127_4054454_1 Belongs to the TPP enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 362.0
DYD3_k127_4054454_2 COG0655 Multimeric flavodoxin WrbA - - - 0.000000000000000000000000000000000000000000000000000000000000000000001024 239.0
DYD3_k127_4054454_3 Uncharacterized protein conserved in bacteria (DUF2237) K09966 - - 0.000000000000000000000000000000000000000000008458 165.0
DYD3_k127_4054454_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000004398 111.0
DYD3_k127_4055722_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.179e-225 708.0
DYD3_k127_4055722_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 612.0
DYD3_k127_4055722_10 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000637 162.0
DYD3_k127_4055722_11 Protein of unknown function (DUF493) K09158 - - 0.00000000000000000000000000002226 122.0
DYD3_k127_4055722_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 469.0
DYD3_k127_4055722_3 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 467.0
DYD3_k127_4055722_4 Aminotransferase class IV K00824 - 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009705 385.0
DYD3_k127_4055722_5 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 381.0
DYD3_k127_4055722_6 PFAM UBA THIF-type NAD FAD binding protein K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 344.0
DYD3_k127_4055722_7 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 294.0
DYD3_k127_4055722_8 PFAM regulatory protein TetR K05501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009124 273.0
DYD3_k127_4055722_9 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000126 175.0
DYD3_k127_4075231_0 Cysteine-rich domain - - - 4.095e-230 719.0
DYD3_k127_4075231_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 541.0
DYD3_k127_4075231_10 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001056 258.0
DYD3_k127_4075231_11 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000242 262.0
DYD3_k127_4075231_12 - - - - 0.00000000000000000000000000000000000000000000000000000000001741 216.0
DYD3_k127_4075231_13 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000000002086 159.0
DYD3_k127_4075231_14 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000149 139.0
DYD3_k127_4075231_15 CNP1-like family - - - 0.000000000000000000000000000000008874 136.0
DYD3_k127_4075231_16 - K06950 - - 0.00000000000444 68.0
DYD3_k127_4075231_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 509.0
DYD3_k127_4075231_3 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008147 457.0
DYD3_k127_4075231_4 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 446.0
DYD3_k127_4075231_5 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 430.0
DYD3_k127_4075231_6 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 404.0
DYD3_k127_4075231_7 response regulator K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 352.0
DYD3_k127_4075231_8 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000374 284.0
DYD3_k127_4075231_9 Spermidine synthase K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002204 284.0
DYD3_k127_411782_0 Protein of unknown function, DUF255 K06888 - - 2.042e-270 847.0
DYD3_k127_411782_1 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007553 618.0
DYD3_k127_411782_2 Histidine kinase K10125 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008009 468.0
DYD3_k127_411782_3 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007578 444.0
DYD3_k127_4134834_0 Predicted membrane protein (DUF2238) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001593 274.0
DYD3_k127_4134834_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000001692 269.0
DYD3_k127_4134834_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000007817 158.0
DYD3_k127_4134834_3 Protein of unknown function (DUF493) K09158 - - 0.0000000000000000000000000000002688 125.0
DYD3_k127_4134834_4 peroxiredoxin activity - - - 0.00000000000000000000003736 102.0
DYD3_k127_4134834_6 peroxiredoxin activity - - - 0.0001872 48.0
DYD3_k127_413609_0 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005418 501.0
DYD3_k127_413609_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 398.0
DYD3_k127_413609_2 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 361.0
DYD3_k127_413609_3 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000000000000000000000000005845 209.0
DYD3_k127_413609_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000004934 207.0
DYD3_k127_413609_5 Histidine triad (Hit) protein - - - 0.000000000000000000000000000000000000000000007667 169.0
DYD3_k127_413609_6 COG2335 Secreted and surface protein containing fasciclin-like repeats - - - 0.000000000003701 69.0
DYD3_k127_413609_7 Protein of unknown function (DUF2817) - - - 0.0000000002711 66.0
DYD3_k127_4215673_0 heavy metal translocating P-type ATPase - - - 0.0 1065.0
DYD3_k127_4215673_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00520 - 1.16.1.1 4.873e-206 657.0
DYD3_k127_4215673_10 Mercury scavenger that specifically binds to one mercury ion and which passes it to the mercuric reductase (MerA) via the MerT protein K08364 - - 0.000000000000000006412 84.0
DYD3_k127_4215673_11 - - - - 0.00001672 54.0
DYD3_k127_4215673_2 PFAM cation efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001555 254.0
DYD3_k127_4215673_3 polyketide cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000005514 222.0
DYD3_k127_4215673_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000000000000000000004839 200.0
DYD3_k127_4215673_5 UPF0060 membrane protein K09771 - - 0.000000000000000000000000000000000000000009607 157.0
DYD3_k127_4215673_6 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000132 148.0
DYD3_k127_4215673_7 PFAM Mercuric transport protein MerT K08363 - - 0.0000000000000000000000000000000000283 138.0
DYD3_k127_4215673_8 Transcriptional regulator K08365 - - 0.0000000000000000000000000000008391 126.0
DYD3_k127_4244536_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 575.0
DYD3_k127_4244536_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003856 329.0
DYD3_k127_4244536_10 SWI complex, BAF60b domains - - - 0.00000000000000000000000000000006966 128.0
DYD3_k127_4244536_11 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000002701 102.0
DYD3_k127_4244536_12 Protein conserved in bacteria - - - 0.0000000000000000002261 96.0
DYD3_k127_4244536_13 TPM domain - - - 0.0002033 46.0
DYD3_k127_4244536_2 Asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 307.0
DYD3_k127_4244536_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000244 268.0
DYD3_k127_4244536_4 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003098 261.0
DYD3_k127_4244536_5 major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003578 264.0
DYD3_k127_4244536_6 Pfam:PNPOx_C K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000003271 247.0
DYD3_k127_4244536_7 Glycine zipper - - - 0.0000000000000000000000000000000000000000000000000000000006402 211.0
DYD3_k127_4244536_8 Drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000002043 212.0
DYD3_k127_4244536_9 NnrU protein - - - 0.0000000000000000000000000000000000000000000000000000001347 202.0
DYD3_k127_4272371_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.373e-274 857.0
DYD3_k127_4272371_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 573.0
DYD3_k127_4272371_10 preprotein translocase subunit YajC K03210 - - 0.00000000000000000000000000000000001141 138.0
DYD3_k127_4272371_2 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 538.0
DYD3_k127_4272371_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 417.0
DYD3_k127_4272371_4 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003652 419.0
DYD3_k127_4272371_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009728 363.0
DYD3_k127_4272371_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 336.0
DYD3_k127_4272371_7 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 287.0
DYD3_k127_4272371_8 PFAM SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009232 269.0
DYD3_k127_4272371_9 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000002525 169.0
DYD3_k127_4296315_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1354.0
DYD3_k127_4296315_1 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 537.0
DYD3_k127_4296315_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 451.0
DYD3_k127_4296315_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 422.0
DYD3_k127_4296315_4 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006837 362.0
DYD3_k127_4296315_5 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 353.0
DYD3_k127_4296315_6 protein conserved in bacteria - - - 0.000000000000000002091 93.0
DYD3_k127_4309240_0 Gamma-glutamyltranspeptidase - - - 6.57e-231 728.0
DYD3_k127_4309240_1 Fad dependent oxidoreductase K00273 - 1.4.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 450.0
DYD3_k127_4309240_10 Amidohydrolase K01686 - 4.2.1.8 0.000000000000000000000007793 105.0
DYD3_k127_4309240_11 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000001333 83.0
DYD3_k127_4309240_12 Histidine kinase - - - 0.000000000000006073 84.0
DYD3_k127_4309240_2 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008243 437.0
DYD3_k127_4309240_3 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 357.0
DYD3_k127_4309240_4 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 353.0
DYD3_k127_4309240_5 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003473 308.0
DYD3_k127_4309240_6 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000127 280.0
DYD3_k127_4309240_7 Protein of unknown function (DUF3025) - - - 0.00000000000000000000000000000000000000000000000000000000000004507 224.0
DYD3_k127_4309240_8 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000000000007365 204.0
DYD3_k127_4309240_9 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000002623 145.0
DYD3_k127_4344744_0 Neisseria PilC beta-propeller domain K02674 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 494.0
DYD3_k127_4344744_1 Neisseria PilC beta-propeller domain K02674 - - 0.00000000000000000000000000000000000000000000000000000000000004678 231.0
DYD3_k127_4375849_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 7.256e-306 950.0
DYD3_k127_4375849_1 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 4.105e-201 631.0
DYD3_k127_4375849_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 559.0
DYD3_k127_4375849_3 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 467.0
DYD3_k127_4375849_4 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 388.0
DYD3_k127_4375849_5 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 342.0
DYD3_k127_4375849_6 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006087 299.0
DYD3_k127_4375849_7 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000001398 215.0
DYD3_k127_4375849_8 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000000002392 152.0
DYD3_k127_4375849_9 Type IV pilus biogenesis stability protein PilW - - - 0.00000000000000000000000000000003967 129.0
DYD3_k127_4381708_0 BT1 family - - - 1.342e-235 740.0
DYD3_k127_4381708_1 Protein conserved in bacteria K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000153 256.0
DYD3_k127_4381708_2 membrane - - - 0.000000000000000000000000000000000000000000000003157 177.0
DYD3_k127_4381708_3 - - - - 0.00000000000000000000000000000000000000009803 160.0
DYD3_k127_4381708_4 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000001813 154.0
DYD3_k127_4381708_5 - - - - 0.000000000000000000000000000001446 128.0
DYD3_k127_4381708_6 PFAM short chain dehydrogenase - - - 0.000000000000000000000000001415 121.0
DYD3_k127_4391012_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 9.152e-208 655.0
DYD3_k127_4391012_1 Belongs to the TPP enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 514.0
DYD3_k127_4391012_10 Cytochrome C1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 300.0
DYD3_k127_4391012_11 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 293.0
DYD3_k127_4391012_12 TIGRFAM Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 288.0
DYD3_k127_4391012_13 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001445 275.0
DYD3_k127_4391012_14 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000009284 263.0
DYD3_k127_4391012_15 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000000000000000000002141 207.0
DYD3_k127_4391012_16 Stringent starvation protein B K03600 - - 0.0000000000000000000000000000000000000009615 153.0
DYD3_k127_4391012_17 Psort location Cytoplasmic, score K01523 - 3.6.1.31 0.000000000000000000000000000000001634 138.0
DYD3_k127_4391012_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000000000003512 128.0
DYD3_k127_4391012_19 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000001947 95.0
DYD3_k127_4391012_2 Belongs to the peptidase S1C family K04691,K04772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 479.0
DYD3_k127_4391012_20 Domain of unknown function (DUF4340) - - - 0.000000000000000005116 98.0
DYD3_k127_4391012_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007525 403.0
DYD3_k127_4391012_4 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 403.0
DYD3_k127_4391012_5 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 380.0
DYD3_k127_4391012_6 ABC-type uncharacterized transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 387.0
DYD3_k127_4391012_7 Glutathione S-transferase, N-terminal domain K03599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009542 353.0
DYD3_k127_4391012_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 326.0
DYD3_k127_4391012_9 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000676 331.0
DYD3_k127_4417670_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 579.0
DYD3_k127_4417670_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000484 499.0
DYD3_k127_4417670_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 501.0
DYD3_k127_4417670_3 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 324.0
DYD3_k127_4417670_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000003347 201.0
DYD3_k127_4435359_0 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 470.0
DYD3_k127_4435359_1 ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 341.0
DYD3_k127_4435359_2 Domain of unknown function (DUF2437) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 291.0
DYD3_k127_4435359_3 Uncharacterised protein family (UPF0093) K08973 - - 0.000000000000000000000000000000000000000000000000000000000000000000002246 237.0
DYD3_k127_4435359_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.0000000000000000000000000000000000000001541 156.0
DYD3_k127_4435359_6 Selenocysteine lyase - - - 0.00007244 48.0
DYD3_k127_4530621_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 3.864e-263 819.0
DYD3_k127_4530621_1 Belongs to the TPP enzyme family K01576 - 4.1.1.7 8.054e-197 632.0
DYD3_k127_4530621_10 helix_turn_helix, Lux Regulon - - - 0.000000000007303 68.0
DYD3_k127_4530621_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009714 542.0
DYD3_k127_4530621_3 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 535.0
DYD3_k127_4530621_4 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 381.0
DYD3_k127_4530621_5 Belongs to the HpcH HpaI aldolase family K00979,K02510 - 2.7.7.38,4.1.2.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 288.0
DYD3_k127_4530621_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002214 276.0
DYD3_k127_4530621_7 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003157 269.0
DYD3_k127_4530621_8 extracellular solute-binding protein, family 1 K22003 - 5.3.3.7 0.000000000000000000000000000000000000000000000000000000000000003427 225.0
DYD3_k127_4530621_9 Bacterial extracellular solute-binding protein K02020,K22003 - 5.3.3.7 0.000000000000000000000000000000000000000000000000000000000000834 218.0
DYD3_k127_4547596_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 7.992e-223 709.0
DYD3_k127_4547596_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006608 524.0
DYD3_k127_4547596_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 401.0
DYD3_k127_4547596_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000007835 248.0
DYD3_k127_4547596_4 MraZ protein, putative antitoxin-like K03925 - - 0.0000000000000000000000000000000000000000000000000000000001591 206.0
DYD3_k127_4547596_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.0000000000000000000000000002254 117.0
DYD3_k127_4560038_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K03852 - 2.3.3.15 3.392e-257 805.0
DYD3_k127_4560038_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 8.314e-255 818.0
DYD3_k127_4560038_10 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 357.0
DYD3_k127_4560038_11 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 349.0
DYD3_k127_4560038_12 Transcriptional regulator K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 346.0
DYD3_k127_4560038_13 HemY protein N-terminus K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005674 340.0
DYD3_k127_4560038_14 uroporphyrinogen III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 304.0
DYD3_k127_4560038_15 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 294.0
DYD3_k127_4560038_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 304.0
DYD3_k127_4560038_17 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000491 277.0
DYD3_k127_4560038_18 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000002545 242.0
DYD3_k127_4560038_19 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000007047 202.0
DYD3_k127_4560038_2 PFAM Carbamoyl-phosphate synthase L chain ATP-binding K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 4.865e-234 729.0
DYD3_k127_4560038_20 Biotin-requiring enzyme K02160 - - 0.00000000000000000000000000000000000000000000000000000006677 199.0
DYD3_k127_4560038_21 Membrane - - - 0.0000000000000000000000000000000000000000000000008303 189.0
DYD3_k127_4560038_23 Protein of unknown function (DUF3426) - - - 0.000000000000000000000000000000000000000001125 167.0
DYD3_k127_4560038_24 Thioredoxin-like - - - 0.000000000000000000000000000000000000000002607 162.0
DYD3_k127_4560038_25 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000001653 153.0
DYD3_k127_4560038_26 protein involved in tolerance to divalent cations K03926 - - 0.000000000000000000000000000000000019 139.0
DYD3_k127_4560038_27 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000007905 99.0
DYD3_k127_4560038_28 - - - - 0.00000000000000003644 83.0
DYD3_k127_4560038_29 Membrane - - - 0.0000000000001632 70.0
DYD3_k127_4560038_3 argininosuccinate lyase K01755 - 4.3.2.1 7.912e-215 675.0
DYD3_k127_4560038_30 - - - - 0.0000000000004449 68.0
DYD3_k127_4560038_4 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 2.071e-204 655.0
DYD3_k127_4560038_5 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 444.0
DYD3_k127_4560038_6 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 432.0
DYD3_k127_4560038_7 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005344 419.0
DYD3_k127_4560038_8 Histidine kinase K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009181 405.0
DYD3_k127_4560038_9 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 380.0
DYD3_k127_4573167_0 Glutathione S-transferase, N-terminal domain K01800 - 5.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000004402 260.0
DYD3_k127_4573167_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000005408 244.0
DYD3_k127_4573167_2 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000001852 176.0
DYD3_k127_4573167_3 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.0000000000000000000000000000000000002459 153.0
DYD3_k127_4573167_4 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000001947 113.0
DYD3_k127_4573167_5 Evidence 4 Homologs of previously reported genes of - - - 0.0002224 46.0
DYD3_k127_4606882_0 tRNA synthetases class I (E and Q), catalytic domain K01885 - 6.1.1.17 5.901e-195 618.0
DYD3_k127_4606882_1 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 529.0
DYD3_k127_4606882_10 Protein of unknown function (DUF2459) - - - 0.00000000000000000000000000000000000000000000000002034 190.0
DYD3_k127_4606882_11 oxidation-reduction process K09022 - 3.5.99.10 0.000000000000000000000000000000007588 131.0
DYD3_k127_4606882_12 - - - - 0.00000001275 62.0
DYD3_k127_4606882_13 - - - - 0.0000000214 55.0
DYD3_k127_4606882_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 512.0
DYD3_k127_4606882_3 pdz dhr glgf - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 465.0
DYD3_k127_4606882_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008482 449.0
DYD3_k127_4606882_5 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 385.0
DYD3_k127_4606882_6 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 372.0
DYD3_k127_4606882_7 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 301.0
DYD3_k127_4606882_8 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002937 291.0
DYD3_k127_4606882_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000002748 236.0
DYD3_k127_4637048_0 3-carboxy-cis,cis-muconate cycloisomerase K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 580.0
DYD3_k127_4637048_1 PFAM Alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 451.0
DYD3_k127_4637048_10 Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000001299 218.0
DYD3_k127_4637048_11 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000003716 179.0
DYD3_k127_4637048_12 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000001191 163.0
DYD3_k127_4637048_13 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028,K01039 - 2.8.3.12,2.8.3.5 0.000000000000000000000000000000000000000001502 158.0
DYD3_k127_4637048_14 flavin adenine dinucleotide binding - - - 0.0000000000000000000000000000000141 137.0
DYD3_k127_4637048_15 Cupin domain - - - 0.000000000000000009686 92.0
DYD3_k127_4637048_16 Fumarylacetoacetate (FAA) hydrolase family K02509 - - 0.00000000000003149 83.0
DYD3_k127_4637048_17 - - - - 0.00001574 54.0
DYD3_k127_4637048_2 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006816 439.0
DYD3_k127_4637048_3 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007847 419.0
DYD3_k127_4637048_4 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 374.0
DYD3_k127_4637048_5 acyl-CoA transferase carnitine dehydratase K18702 - 2.8.3.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 357.0
DYD3_k127_4637048_6 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 342.0
DYD3_k127_4637048_7 Coenzyme A transferase K01040 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 323.0
DYD3_k127_4637048_8 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 289.0
DYD3_k127_4637048_9 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000003439 264.0
DYD3_k127_4641544_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1075.0
DYD3_k127_4641544_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 2.467e-272 864.0
DYD3_k127_4641544_2 Aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 547.0
DYD3_k127_4641544_3 protein conserved in bacteria K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 368.0
DYD3_k127_4641544_4 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 326.0
DYD3_k127_4641544_5 cell redox homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000853 243.0
DYD3_k127_4641544_6 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000000000272 199.0
DYD3_k127_4641544_7 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000003579 177.0
DYD3_k127_4641544_8 - - - - 0.00000006065 59.0
DYD3_k127_4641544_9 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000002018 52.0
DYD3_k127_4755482_0 Nitrile hydratase, alpha chain K01721,K20807 - 4.2.1.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000001346 263.0
DYD3_k127_4755482_1 quinone binding K12057,K22278 - 3.5.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000003141 265.0
DYD3_k127_4755482_10 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.000000000000000000000000000009395 123.0
DYD3_k127_4755482_11 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000001606 113.0
DYD3_k127_4755482_12 drug transmembrane transporter activity K03327 - - 0.000000000000000000000003103 109.0
DYD3_k127_4755482_13 COG0457 FOG TPR repeat - - - 0.000000000000000000003545 99.0
DYD3_k127_4755482_14 - - - - 0.000000000001515 74.0
DYD3_k127_4755482_2 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000003219 261.0
DYD3_k127_4755482_3 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000192 215.0
DYD3_k127_4755482_4 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000001908 203.0
DYD3_k127_4755482_5 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000005494 205.0
DYD3_k127_4755482_6 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000002492 207.0
DYD3_k127_4755482_7 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.00000000000000000000000000000000000001356 151.0
DYD3_k127_4755482_8 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000569 147.0
DYD3_k127_4755482_9 - - - - 0.0000000000000000000000000000003612 127.0
DYD3_k127_475924_0 MMPL family - - - 0.0 1315.0
DYD3_k127_475924_1 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11745,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006859 606.0
DYD3_k127_475924_10 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 314.0
DYD3_k127_475924_11 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 308.0
DYD3_k127_475924_12 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 301.0
DYD3_k127_475924_13 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002861 248.0
DYD3_k127_475924_14 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.0000000000000000000000000000000000000000000000000001964 196.0
DYD3_k127_475924_15 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000002758 175.0
DYD3_k127_475924_16 Pfam Nitroreductase - - - 0.00000000000000000000000000000000000000000000001606 174.0
DYD3_k127_475924_17 Membrane K15977 - - 0.0000000000000000000000000000000000000000003066 162.0
DYD3_k127_475924_18 SNARE associated Golgi protein - - - 0.0000000009374 59.0
DYD3_k127_475924_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000635 593.0
DYD3_k127_475924_3 synthase component I K01665 - 2.6.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 556.0
DYD3_k127_475924_4 Glutathione S-Transferase K07393 - 1.8.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 497.0
DYD3_k127_475924_5 ABC transporter substrate-binding protein K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005679 399.0
DYD3_k127_475924_6 Glutathione S-transferase, N-terminal domain K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009537 389.0
DYD3_k127_475924_7 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007988 365.0
DYD3_k127_475924_8 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 360.0
DYD3_k127_475924_9 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 344.0
DYD3_k127_4789929_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 7.653e-196 617.0
DYD3_k127_4789929_1 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 563.0
DYD3_k127_4789929_10 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000000000005471 205.0
DYD3_k127_4789929_11 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000008571 137.0
DYD3_k127_4789929_12 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000006282 71.0
DYD3_k127_4789929_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 505.0
DYD3_k127_4789929_3 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 502.0
DYD3_k127_4789929_4 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003882 488.0
DYD3_k127_4789929_5 AIR synthase related protein, N-terminal domain K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 326.0
DYD3_k127_4789929_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000000002967 231.0
DYD3_k127_4789929_7 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000006707 229.0
DYD3_k127_4789929_8 Lumazine binding domain K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000008835 224.0
DYD3_k127_4789929_9 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000000000000000000000000000000000000000000544 211.0
DYD3_k127_4834881_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 5.768e-249 783.0
DYD3_k127_4834881_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 2.259e-248 772.0
DYD3_k127_4834881_10 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 419.0
DYD3_k127_4834881_11 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 419.0
DYD3_k127_4834881_12 exodeoxyribonuclease iii K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 417.0
DYD3_k127_4834881_13 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 392.0
DYD3_k127_4834881_14 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008048 382.0
DYD3_k127_4834881_15 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 364.0
DYD3_k127_4834881_16 Short-chain dehydrogenase reductase SDR K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 334.0
DYD3_k127_4834881_17 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 310.0
DYD3_k127_4834881_18 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 309.0
DYD3_k127_4834881_19 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 311.0
DYD3_k127_4834881_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 7.508e-236 739.0
DYD3_k127_4834881_20 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 301.0
DYD3_k127_4834881_21 lipid A biosynthesis lauroyl acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004033 293.0
DYD3_k127_4834881_22 xylanase chitin deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 292.0
DYD3_k127_4834881_23 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004567 287.0
DYD3_k127_4834881_24 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005702 254.0
DYD3_k127_4834881_25 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003452 252.0
DYD3_k127_4834881_26 protein conserved in bacteria K09921 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009573 251.0
DYD3_k127_4834881_27 rod shape-determining protein MreD K03571 - - 0.0000000000000000000000000000000000000000000005939 171.0
DYD3_k127_4834881_28 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000002985 158.0
DYD3_k127_4834881_29 CoA-binding protein K06929 - - 0.000000000000000000000000000000000000575 143.0
DYD3_k127_4834881_3 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.974e-201 638.0
DYD3_k127_4834881_30 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000001029 142.0
DYD3_k127_4834881_31 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000001848 131.0
DYD3_k127_4834881_32 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000389 137.0
DYD3_k127_4834881_33 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000004045 108.0
DYD3_k127_4834881_34 Domain of unknown function (DUF4124) - - - 0.000006405 56.0
DYD3_k127_4834881_4 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.708e-194 616.0
DYD3_k127_4834881_5 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004487 605.0
DYD3_k127_4834881_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 608.0
DYD3_k127_4834881_7 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006818 556.0
DYD3_k127_4834881_8 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 497.0
DYD3_k127_4834881_9 SMART PUA domain containing protein K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 459.0
DYD3_k127_4864736_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006102 441.0
DYD3_k127_4864736_1 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000001309 244.0
DYD3_k127_4864736_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000006375 54.0
DYD3_k127_4864736_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00009613 48.0
DYD3_k127_4867562_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0 1023.0
DYD3_k127_4867562_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.01e-321 996.0
DYD3_k127_4867562_10 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.45e-203 645.0
DYD3_k127_4867562_11 AAA ATPase central domain protein K07478 - - 2.25e-197 629.0
DYD3_k127_4867562_12 DHH family K07462 - - 2.392e-196 629.0
DYD3_k127_4867562_13 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007012 623.0
DYD3_k127_4867562_14 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 595.0
DYD3_k127_4867562_15 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 571.0
DYD3_k127_4867562_16 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002761 546.0
DYD3_k127_4867562_17 associated with various cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 536.0
DYD3_k127_4867562_18 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045 526.0
DYD3_k127_4867562_19 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005579 519.0
DYD3_k127_4867562_2 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 2.603e-303 941.0
DYD3_k127_4867562_20 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 477.0
DYD3_k127_4867562_21 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009671 470.0
DYD3_k127_4867562_22 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 462.0
DYD3_k127_4867562_23 VWA-like domain (DUF2201) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 469.0
DYD3_k127_4867562_24 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005453 452.0
DYD3_k127_4867562_25 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 450.0
DYD3_k127_4867562_26 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 396.0
DYD3_k127_4867562_27 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 383.0
DYD3_k127_4867562_28 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 363.0
DYD3_k127_4867562_29 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 351.0
DYD3_k127_4867562_3 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 - 6.1.1.20 2.307e-276 870.0
DYD3_k127_4867562_30 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 329.0
DYD3_k127_4867562_31 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007039 321.0
DYD3_k127_4867562_32 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 299.0
DYD3_k127_4867562_33 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007574 285.0
DYD3_k127_4867562_34 Adenosine specific kinase K09129 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005639 274.0
DYD3_k127_4867562_35 glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000001754 264.0
DYD3_k127_4867562_36 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009272 252.0
DYD3_k127_4867562_37 synthesis repressor, PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002194 246.0
DYD3_k127_4867562_38 DNA replication, recombination and repair K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000003496 246.0
DYD3_k127_4867562_39 Conserved TM helix - - - 0.0000000000000000000000000000000000000000000000000000000000000000005112 237.0
DYD3_k127_4867562_4 DNA internalization-related competence protein ComEC Rec2 K02238 - - 4.277e-263 835.0
DYD3_k127_4867562_40 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000000000000000000000000000000000000002655 230.0
DYD3_k127_4867562_41 xylan catabolic process K09252 - 3.1.1.73 0.0000000000000000000000000000000000000000000000000000000000001179 224.0
DYD3_k127_4867562_42 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.000000000000000000000000000000000000000000000000000000000000201 218.0
DYD3_k127_4867562_43 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000002373 226.0
DYD3_k127_4867562_44 Transcriptional regulator crp fnr family K10914 - - 0.0000000000000000000000000000000000000000000000000000000000002543 223.0
DYD3_k127_4867562_45 2-keto-4-pentenoate hydratase - - - 0.000000000000000000000000000000000000000000000000000000000007141 217.0
DYD3_k127_4867562_46 PFAM Formylglycine-generating sulfatase enzyme K18912,K20333 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000000008811 213.0
DYD3_k127_4867562_47 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000000000000001932 201.0
DYD3_k127_4867562_48 Bacterial type II and III secretion system protein - - - 0.0000000000000000000000000000000000000000000000000000004915 205.0
DYD3_k127_4867562_49 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000000001187 186.0
DYD3_k127_4867562_5 HELICc2 K03722 - 3.6.4.12 3.461e-253 798.0
DYD3_k127_4867562_50 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000001586 184.0
DYD3_k127_4867562_51 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000007348 187.0
DYD3_k127_4867562_52 PFAM regulatory protein, MerR - - - 0.000000000000000000000000000000000000000000000002091 175.0
DYD3_k127_4867562_53 Small MutS-related domain - - - 0.000000000000000000000000000000000000000000109 179.0
DYD3_k127_4867562_54 Protein of unknown function (DUF3313) - - - 0.0000000000000000000000000000000000000000002383 167.0
DYD3_k127_4867562_55 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000006627 169.0
DYD3_k127_4867562_56 PFAM NLP P60 protein - - - 0.00000000000000000000000000000000000000004963 156.0
DYD3_k127_4867562_57 PFAM SNARE associated Golgi protein K19302 - 3.6.1.27 0.0000000000000000000000000000000000003864 148.0
DYD3_k127_4867562_58 FecR protein - - - 0.0000000000000000000000000000000000008934 152.0
DYD3_k127_4867562_59 Circularly permuted ATP-grasp type 2 - - - 0.00000000000000000000000000000001795 141.0
DYD3_k127_4867562_6 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 4.707e-235 749.0
DYD3_k127_4867562_60 Glycine zipper 2TM domain - - - 0.000000000000000000000000000000232 131.0
DYD3_k127_4867562_61 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000003507 121.0
DYD3_k127_4867562_62 Protein of unknown function (DUF3568) - - - 0.0000000000000000000000006979 111.0
DYD3_k127_4867562_63 - - - - 0.00000000000000000000001207 113.0
DYD3_k127_4867562_64 SdpI/YhfL protein family - - - 0.000000000000000000371 98.0
DYD3_k127_4867562_65 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000007915 85.0
DYD3_k127_4867562_67 hydroperoxide reductase activity K07486 - - 0.000000000205 67.0
DYD3_k127_4867562_69 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00001405 51.0
DYD3_k127_4867562_7 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 3.307e-225 707.0
DYD3_k127_4867562_70 - - - - 0.0003244 48.0
DYD3_k127_4867562_71 - - - - 0.0005841 49.0
DYD3_k127_4867562_8 ABC-type Fe3 transport system, permease component K02011 - - 3.431e-209 664.0
DYD3_k127_4867562_9 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 2.402e-205 653.0
DYD3_k127_4891796_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 1.145e-252 792.0
DYD3_k127_4891796_1 Oligopeptide/dipeptide transporter, C-terminal region - - - 2.433e-225 726.0
DYD3_k127_4891796_10 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000009884 51.0
DYD3_k127_4891796_2 Amidase K01457 - 3.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 584.0
DYD3_k127_4891796_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 463.0
DYD3_k127_4891796_4 Binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 431.0
DYD3_k127_4891796_5 GntR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001778 248.0
DYD3_k127_4891796_6 SMART cyclic nucleotide-binding K10914 - - 0.000000000000000000000000000000000000000000000000000000000004347 222.0
DYD3_k127_4891796_7 Serine hydrolase K07002 - - 0.000000000000000000000000000000000000000000000000622 180.0
DYD3_k127_4891796_8 OsmC-like protein - - - 0.000000006378 60.0
DYD3_k127_4891796_9 carboxymuconolactone decarboxylase - - - 0.000000152 55.0
DYD3_k127_492175_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.0 1058.0
DYD3_k127_492175_1 alanine symporter K03310 - - 2.409e-208 655.0
DYD3_k127_492175_2 Periplasmic binding protein domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007435 520.0
DYD3_k127_492175_3 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 366.0
DYD3_k127_492175_4 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 362.0
DYD3_k127_492175_5 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005774 351.0
DYD3_k127_492175_6 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001288 272.0
DYD3_k127_492175_7 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000002739 198.0
DYD3_k127_5044680_0 Protein of unknown function - - - 0.0 1157.0
DYD3_k127_5044680_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.073e-308 970.0
DYD3_k127_5044680_10 SnoaL-like domain - - - 0.00000000000000000000000000000000000004583 148.0
DYD3_k127_5044680_11 Zinc-finger domain - - - 0.0000000000000000000000000000009335 122.0
DYD3_k127_5044680_2 COG1053 Succinate dehydrogenase fumarate reductase flavoprotein subunit K13796 - - 2.257e-231 725.0
DYD3_k127_5044680_3 phosphoglucomutase phosphomannomutase alpha beta alpha domain II K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 1.576e-215 676.0
DYD3_k127_5044680_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 504.0
DYD3_k127_5044680_5 PFAM Adenylyl cyclase class-3 4 guanylyl cyclase K01769 - 4.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009205 446.0
DYD3_k127_5044680_6 Alpha beta hydrolase K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 394.0
DYD3_k127_5044680_7 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 371.0
DYD3_k127_5044680_8 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 369.0
DYD3_k127_5044680_9 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000002787 189.0
DYD3_k127_5065349_0 glycyl-tRNA synthetase beta K01879 - 6.1.1.14 4.331e-207 668.0
DYD3_k127_5065349_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 556.0
DYD3_k127_5065349_2 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 508.0
DYD3_k127_5065349_3 Glycosyl transferase family 41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000585 449.0
DYD3_k127_5065349_4 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 365.0
DYD3_k127_5065349_5 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009812 323.0
DYD3_k127_5065349_6 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 307.0
DYD3_k127_5065349_7 D,D-heptose 1,7-bisphosphate phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000004992 265.0
DYD3_k127_5065349_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000006077 186.0
DYD3_k127_5065349_9 Gram-negative porin K03285 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000001086 82.0
DYD3_k127_5142958_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 7.029e-282 874.0
DYD3_k127_5142958_1 PFAM fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 581.0
DYD3_k127_5142958_10 PFAM Aminotransferase, class V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000001354 103.0
DYD3_k127_5142958_11 - - - - 0.00000000000001758 76.0
DYD3_k127_5142958_12 Transglycosylase associated protein - - - 0.000000000007552 68.0
DYD3_k127_5142958_13 Entericidin EcnA/B family - - - 0.00001771 48.0
DYD3_k127_5142958_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 486.0
DYD3_k127_5142958_3 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 435.0
DYD3_k127_5142958_4 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 419.0
DYD3_k127_5142958_5 Short-chain dehydrogenase reductase SDR K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008465 342.0
DYD3_k127_5142958_6 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000004401 206.0
DYD3_k127_5142958_7 - - - - 0.00000000000000000000000000000000000000000000000242 181.0
DYD3_k127_5142958_8 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000001247 167.0
DYD3_k127_5142958_9 Glycine zipper 2TM domain - - - 0.0000000000000000000000000000000000000000007724 164.0
DYD3_k127_5148866_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007519 552.0
DYD3_k127_5148866_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 550.0
DYD3_k127_5148866_10 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002206 282.0
DYD3_k127_5148866_11 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003339 265.0
DYD3_k127_5148866_12 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002951 250.0
DYD3_k127_5148866_13 RDD family - - - 0.0000000000000000000000000000000000000000000000000007104 193.0
DYD3_k127_5148866_14 - - - - 0.00000000000000000000000000000000000000000000000000971 190.0
DYD3_k127_5148866_15 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000007418 165.0
DYD3_k127_5148866_16 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000001229 155.0
DYD3_k127_5148866_17 - - - - 0.000000000000000000000000000001499 128.0
DYD3_k127_5148866_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 527.0
DYD3_k127_5148866_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K01841,K03417 - 4.1.3.30,5.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007018 451.0
DYD3_k127_5148866_4 L-carnitine dehydratase bile acid-inducible protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 442.0
DYD3_k127_5148866_5 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 359.0
DYD3_k127_5148866_6 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 316.0
DYD3_k127_5148866_7 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000258 299.0
DYD3_k127_5148866_8 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006326 303.0
DYD3_k127_5148866_9 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 293.0
DYD3_k127_5158493_0 FAD binding domain K13796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 590.0
DYD3_k127_5158493_1 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 449.0
DYD3_k127_5158493_10 Adenylate and Guanylate cyclase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 304.0
DYD3_k127_5158493_11 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000702 298.0
DYD3_k127_5158493_12 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 275.0
DYD3_k127_5158493_13 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008355 262.0
DYD3_k127_5158493_14 D-isomer specific 2-hydroxyacid dehydrogenase K00018 - 1.1.1.29 0.000000000000000000000000000000000000000000000000000000007555 203.0
DYD3_k127_5158493_15 Putative molybdenum carrier - - - 0.00000000000000000000000000000000000000000000000002952 184.0
DYD3_k127_5158493_16 - - - - 0.00000000000000000000000000000000009238 139.0
DYD3_k127_5158493_17 AMIN domain K02666 - - 0.00004835 51.0
DYD3_k127_5158493_2 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 419.0
DYD3_k127_5158493_3 TGS domain K06944 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 395.0
DYD3_k127_5158493_4 PFAM ABC transporter related K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 374.0
DYD3_k127_5158493_5 Taurine catabolism dioxygenase TauD, TfdA family K22303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009846 371.0
DYD3_k127_5158493_6 Dehydrogenase K15054 - 1.1.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 362.0
DYD3_k127_5158493_7 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 338.0
DYD3_k127_5158493_8 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 319.0
DYD3_k127_5158493_9 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007075 312.0
DYD3_k127_5176788_0 Zinc-binding dehydrogenase K00121 - 1.1.1.1,1.1.1.284 7.046e-206 646.0
DYD3_k127_5176788_1 hmm pf00005 K06147,K11085 - - 1.399e-198 635.0
DYD3_k127_5176788_10 Peptidase M15 K03791 - - 0.000000000000000000000000000000000000000000000000000000000000000724 223.0
DYD3_k127_5176788_11 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - - - 0.00000000000000000000000000000000000000000000000000000000000172 219.0
DYD3_k127_5176788_12 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000001825 224.0
DYD3_k127_5176788_13 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000009579 194.0
DYD3_k127_5176788_14 Belongs to the CinA family - - - 0.00000000000000000000000000000000000000000009279 166.0
DYD3_k127_5176788_15 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000001004 157.0
DYD3_k127_5176788_16 Rhodanese-like domain - - - 0.0000000000000000000000000000009513 131.0
DYD3_k127_5176788_17 peptidase U32 K08303 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000001869 85.0
DYD3_k127_5176788_18 chorismate binding enzyme - - - 0.0000000000002277 73.0
DYD3_k127_5176788_19 peptidase - - - 0.0000000009776 70.0
DYD3_k127_5176788_2 acyl-CoA dehydrogenase - - - 5.459e-198 623.0
DYD3_k127_5176788_20 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000846 56.0
DYD3_k127_5176788_21 DoxX K15977 - - 0.000000111 59.0
DYD3_k127_5176788_3 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 383.0
DYD3_k127_5176788_4 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007265 312.0
DYD3_k127_5176788_5 Acetamidase/Formamidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002138 282.0
DYD3_k127_5176788_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000121 277.0
DYD3_k127_5176788_7 Catalytic LigB subunit of aromatic ring-opening dioxygenase K04101 - 1.13.11.8 0.000000000000000000000000000000000000000000000000000000000000000000000000001285 263.0
DYD3_k127_5176788_8 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001513 250.0
DYD3_k127_5176788_9 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000003299 237.0
DYD3_k127_5232984_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009371 544.0
DYD3_k127_5232984_1 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 414.0
DYD3_k127_5232984_2 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 300.0
DYD3_k127_5232984_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002322 282.0
DYD3_k127_5232984_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005768 263.0
DYD3_k127_5232984_5 Amidohydrolase - - - 0.0000000000000000000000000000000000007311 142.0
DYD3_k127_5232984_6 Tripartite tricarboxylate transporter TctB family - - - 0.0000009965 56.0
DYD3_k127_5232984_7 - - - - 0.0000535 54.0
DYD3_k127_5350666_0 fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 571.0
DYD3_k127_5350666_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 512.0
DYD3_k127_5350666_10 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000002055 137.0
DYD3_k127_5350666_11 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000000005511 95.0
DYD3_k127_5350666_2 AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 488.0
DYD3_k127_5350666_3 FecCD transport family K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 342.0
DYD3_k127_5350666_4 TIGRFAM HAD-superfamily hydrolase, subfamily IB (PSPase-like) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 330.0
DYD3_k127_5350666_5 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 304.0
DYD3_k127_5350666_6 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 284.0
DYD3_k127_5350666_7 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000001367 234.0
DYD3_k127_5350666_8 Belongs to the DnaA family K10763 - - 0.00000000000000000000000000000000000000000000000000000000004836 212.0
DYD3_k127_5350666_9 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000000000000001137 134.0
DYD3_k127_5350906_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 2.424e-260 808.0
DYD3_k127_5350906_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 1.552e-201 636.0
DYD3_k127_5350906_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 451.0
DYD3_k127_5350906_3 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006721 353.0
DYD3_k127_5350906_4 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 - 4.1.3.40 0.0000000000000000000000000006991 115.0
DYD3_k127_5354970_0 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain K01596,K01610 GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010106,GO:0016020,GO:0019725,GO:0030003,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043207,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0071944,GO:0075136,GO:0098771 4.1.1.32,4.1.1.49 5.19e-288 904.0
DYD3_k127_5354970_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 9.193e-241 755.0
DYD3_k127_5354970_10 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 374.0
DYD3_k127_5354970_11 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 373.0
DYD3_k127_5354970_12 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 344.0
DYD3_k127_5354970_13 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 337.0
DYD3_k127_5354970_14 cobalamin synthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 338.0
DYD3_k127_5354970_15 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 314.0
DYD3_k127_5354970_16 6-phosphogluconate dehydrogenase NAD-binding K08319 - 1.1.1.411 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 297.0
DYD3_k127_5354970_17 Cupin 2, conserved barrel domain protein K11312 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009536 286.0
DYD3_k127_5354970_18 LysR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001351 279.0
DYD3_k127_5354970_19 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001067 273.0
DYD3_k127_5354970_2 Tripartite tricarboxylate transporter TctA family - - - 5.674e-207 664.0
DYD3_k127_5354970_20 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000054 256.0
DYD3_k127_5354970_21 Short repeat of unknown function (DUF308) - - - 0.0000000000000000000000000000000000000000000000000000000000006059 216.0
DYD3_k127_5354970_22 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000001509 208.0
DYD3_k127_5354970_23 Domain of unknown function (DUF1840) - - - 0.0000000000000000000000000000008348 124.0
DYD3_k127_5354970_24 phage integrase family - - - 0.00000000000000000003353 95.0
DYD3_k127_5354970_25 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000001183 64.0
DYD3_k127_5354970_26 Maleate cis-trans isomerase K01799 - 5.2.1.1 0.000000008815 66.0
DYD3_k127_5354970_28 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0001721 50.0
DYD3_k127_5354970_3 Belongs to the citrate synthase family K01647,K01659 - 2.3.3.1,2.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 577.0
DYD3_k127_5354970_4 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 562.0
DYD3_k127_5354970_5 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 526.0
DYD3_k127_5354970_6 Oxidoreductase K10219 - 1.1.1.312 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 465.0
DYD3_k127_5354970_7 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 457.0
DYD3_k127_5354970_8 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006706 436.0
DYD3_k127_5354970_9 phosphate acetyltransferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 377.0
DYD3_k127_5442919_0 transglycosylase K08309 - - 4.384e-201 645.0
DYD3_k127_5442919_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 565.0
DYD3_k127_5442919_2 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 389.0
DYD3_k127_5442919_3 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 387.0
DYD3_k127_5442919_4 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 324.0
DYD3_k127_5442919_5 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 316.0
DYD3_k127_5442919_6 - - - - 0.00000000000006872 76.0
DYD3_k127_5468899_0 N-4 methylation of cytosine K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 481.0
DYD3_k127_5468899_1 L-lactate dehydrogenase K00101,K15054 - 1.1.2.3,1.1.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 455.0
DYD3_k127_5468899_2 Phosphoenolpyruvate phosphomutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007697 273.0
DYD3_k127_5468899_3 - - - - 0.0000000000000000000000000000000000000000003192 166.0
DYD3_k127_5468899_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000005263 162.0
DYD3_k127_5468899_5 4Fe-4S double cluster binding domain K11473 - - 0.0000000000000000000000000000001465 124.0
DYD3_k127_5468899_6 - - - - 0.000000000000000000003181 99.0
DYD3_k127_5468899_7 Zinc-binding dehydrogenase K13953 - 1.1.1.1 0.00000000000007088 79.0
DYD3_k127_5568923_0 major facilitator superfamily K03446 - - 3.569e-214 676.0
DYD3_k127_5568923_1 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 2.017e-196 625.0
DYD3_k127_5568923_10 HlyD membrane-fusion protein of T1SS K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001306 273.0
DYD3_k127_5568923_11 lactate metabolic process K00113 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000004741 240.0
DYD3_k127_5568923_12 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000002623 232.0
DYD3_k127_5568923_13 atp-binding protein - - - 0.000000000000000000000000000000000000000000002954 168.0
DYD3_k127_5568923_14 Alkaline phosphatase - - - 0.00000000000000000000000000000000003452 155.0
DYD3_k127_5568923_15 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000000002558 132.0
DYD3_k127_5568923_16 Phosphate-starvation-inducible E K13256 - - 0.00000000000000000000000000000001979 133.0
DYD3_k127_5568923_18 protein conserved in bacteria - - - 0.0000000000000000000000002161 111.0
DYD3_k127_5568923_19 bacterial OsmY and nodulation domain - - - 0.0000000000000000232 87.0
DYD3_k127_5568923_2 Oligopeptide/dipeptide transporter, C-terminal region K15583 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 476.0
DYD3_k127_5568923_20 SMART Transport-associated and nodulation - - - 0.0000000006524 67.0
DYD3_k127_5568923_3 Pfam:UPF0118 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 368.0
DYD3_k127_5568923_4 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 315.0
DYD3_k127_5568923_5 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 304.0
DYD3_k127_5568923_6 PFAM Acyl-CoA dehydrogenase type 2 K16047 - 1.14.14.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 306.0
DYD3_k127_5568923_7 N-acetylmuramoyl-L-alanine amidase K01447,K11066 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006165 286.0
DYD3_k127_5568923_8 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002097 284.0
DYD3_k127_5568923_9 Dehydrogenase K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002852 267.0
DYD3_k127_5578658_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K20023 - 4.2.1.156,4.2.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 491.0
DYD3_k127_5578658_1 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009436 412.0
DYD3_k127_5578658_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604,K11175 GO:0003674,GO:0003824,GO:0004479,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009405,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0042802,GO:0042803,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044419,GO:0046483,GO:0046983,GO:0051704,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.2,2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008461 269.0
DYD3_k127_5578658_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002429 242.0
DYD3_k127_5578658_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006438 257.0
DYD3_k127_5578658_5 membrane - - - 0.000000000000000000000000000000000000000000003433 166.0
DYD3_k127_5578658_6 Methyltransferase domain - - - 0.000000000000000000000000000000001408 143.0
DYD3_k127_5589642_0 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 391.0
DYD3_k127_5589642_1 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 346.0
DYD3_k127_5589642_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000033 276.0
DYD3_k127_5589642_3 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.000000000000000000000000000000000000000000000000001588 190.0
DYD3_k127_5589642_4 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000000000000000000000002421 176.0
DYD3_k127_5589642_5 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0000000001244 62.0
DYD3_k127_5589642_6 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.0000001384 63.0
DYD3_k127_5620118_0 Tripartite tricarboxylate transporter TctA family - - - 4.435e-207 663.0
DYD3_k127_5620118_1 AMP-binding enzyme C-terminal domain K00666 - - 3.184e-204 648.0
DYD3_k127_5620118_10 NMT1/THI5 like K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002085 283.0
DYD3_k127_5620118_11 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009507 278.0
DYD3_k127_5620118_12 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002219 271.0
DYD3_k127_5620118_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003595 258.0
DYD3_k127_5620118_14 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000003001 191.0
DYD3_k127_5620118_15 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000192 178.0
DYD3_k127_5620118_16 Cupin domain - - - 0.00000000000000000000000000000001559 134.0
DYD3_k127_5620118_17 Cytochrome c - - - 0.0000000000000000001673 88.0
DYD3_k127_5620118_18 - K19168 - - 0.00000000000001845 79.0
DYD3_k127_5620118_19 Endoribonuclease L-PSP - - - 0.00000000000001883 80.0
DYD3_k127_5620118_2 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 4.003e-197 633.0
DYD3_k127_5620118_20 Uncharacterized ACR, COG1678 K07735 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000004513 79.0
DYD3_k127_5620118_21 Short repeat of unknown function (DUF308) - - - 0.0000005263 51.0
DYD3_k127_5620118_22 Antibiotic biosynthesis monooxygenase - - - 0.0000008686 56.0
DYD3_k127_5620118_23 - - - - 0.0002776 49.0
DYD3_k127_5620118_3 Histidine kinase K10125 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 466.0
DYD3_k127_5620118_4 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004185 417.0
DYD3_k127_5620118_5 thiamine-containing compound biosynthetic process K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 357.0
DYD3_k127_5620118_6 oxidation-reduction process K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 360.0
DYD3_k127_5620118_7 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 336.0
DYD3_k127_5620118_8 Cache domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 322.0
DYD3_k127_5620118_9 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 294.0
DYD3_k127_5660513_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 480.0
DYD3_k127_5660513_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003425 290.0
DYD3_k127_5660513_2 Trypsin-like peptidase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006894 287.0
DYD3_k127_5660513_3 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001624 238.0
DYD3_k127_5660513_4 Forkhead associated domain - - - 0.000000000000000000000006851 110.0
DYD3_k127_5726952_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 2.7e-284 891.0
DYD3_k127_5726952_1 Acyl-CoA dehydrogenase, middle domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 494.0
DYD3_k127_5726952_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 342.0
DYD3_k127_5726952_3 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000003473 176.0
DYD3_k127_5726952_4 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000001971 177.0
DYD3_k127_5726952_5 SapC - - - 0.00000000000000000000000000000000000005181 154.0
DYD3_k127_5726952_6 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000001471 122.0
DYD3_k127_5726952_7 Chorismate lyase K03181 - 4.1.3.40 0.0005704 48.0
DYD3_k127_5753879_0 Patched family - - - 0.0 1185.0
DYD3_k127_5753879_1 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 4.341e-212 665.0
DYD3_k127_5753879_2 Biotin-lipoyl like K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008274 259.0
DYD3_k127_5753879_3 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) - - - 0.000000000000000000000000000000000000000000000000000000000000000003101 246.0
DYD3_k127_5753879_4 succinate dehydrogenase fumarate reductase, flavoprotein subunit K00394 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000001548 216.0
DYD3_k127_5753879_6 - - - - 0.000000623 55.0
DYD3_k127_5756420_0 RESPONSE REGULATOR receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 598.0
DYD3_k127_5756420_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006417 575.0
DYD3_k127_5756420_10 COG0765 ABC-type amino acid transport system, permease component K09971 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 492.0
DYD3_k127_5756420_11 transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 466.0
DYD3_k127_5756420_12 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 450.0
DYD3_k127_5756420_13 acid transport system permease K09970 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 456.0
DYD3_k127_5756420_14 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 411.0
DYD3_k127_5756420_15 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 401.0
DYD3_k127_5756420_16 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006576 394.0
DYD3_k127_5756420_17 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006198 381.0
DYD3_k127_5756420_18 acid transport K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007995 386.0
DYD3_k127_5756420_19 Bacterial protein of unknown function (DUF899) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 371.0
DYD3_k127_5756420_2 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 580.0
DYD3_k127_5756420_20 PFAM ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 370.0
DYD3_k127_5756420_21 Glutamine cyclotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 366.0
DYD3_k127_5756420_22 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 346.0
DYD3_k127_5756420_23 Queuosine biosynthesis protein QueC K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 336.0
DYD3_k127_5756420_24 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 337.0
DYD3_k127_5756420_25 MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 326.0
DYD3_k127_5756420_26 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004448 314.0
DYD3_k127_5756420_27 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 301.0
DYD3_k127_5756420_28 cell division K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007218 298.0
DYD3_k127_5756420_29 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000001478 266.0
DYD3_k127_5756420_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004334 561.0
DYD3_k127_5756420_30 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001567 259.0
DYD3_k127_5756420_31 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.00000000000000000000000000000000000000000000000000000000000000000000003604 246.0
DYD3_k127_5756420_32 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000002649 244.0
DYD3_k127_5756420_33 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000007694 239.0
DYD3_k127_5756420_34 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000006798 230.0
DYD3_k127_5756420_35 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000001799 229.0
DYD3_k127_5756420_36 Peptidyl-tRNA hydrolase K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000004144 233.0
DYD3_k127_5756420_37 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000008779 209.0
DYD3_k127_5756420_38 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000002513 194.0
DYD3_k127_5756420_39 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000000000000001295 183.0
DYD3_k127_5756420_4 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 529.0
DYD3_k127_5756420_40 TolA binding protein trimerisation - - - 0.0000000000000000000000000000000000000000000000001272 188.0
DYD3_k127_5756420_41 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000000001783 183.0
DYD3_k127_5756420_42 Major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000007033 175.0
DYD3_k127_5756420_43 Cell division and transport-associated protein TolA K03646 - - 0.00000000000000000000000000000000000000000007351 173.0
DYD3_k127_5756420_44 Ferredoxin - - - 0.0000000000000000000000000000000000000000001357 160.0
DYD3_k127_5756420_45 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000006588 160.0
DYD3_k127_5756420_46 DGC domain - - - 0.00000000000000000000000000000000000000001778 159.0
DYD3_k127_5756420_47 oxidase (Subunit iv) - - - 0.00000000000000000000000000000000000000002168 156.0
DYD3_k127_5756420_48 Tol-Pal system-associated acyl-CoA thioesterase K07107 - - 0.000000000000000000000000000000000000007911 149.0
DYD3_k127_5756420_49 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000007573 145.0
DYD3_k127_5756420_5 PFAM Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 531.0
DYD3_k127_5756420_50 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.00000000000000000000000000000008759 133.0
DYD3_k127_5756420_51 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.0000000000000000000000000000002577 126.0
DYD3_k127_5756420_52 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000001557 109.0
DYD3_k127_5756420_53 Cytochrome c oxidase subunit III K02276,K02299 - 1.9.3.1 0.0000000000006746 68.0
DYD3_k127_5756420_54 Pfam Ankyrin K06867 - - 0.0000000002475 72.0
DYD3_k127_5756420_6 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 509.0
DYD3_k127_5756420_7 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 499.0
DYD3_k127_5756420_8 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 506.0
DYD3_k127_5756420_9 Peptidase M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 506.0
DYD3_k127_5758163_0 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 0.0 1811.0
DYD3_k127_5758163_1 SMART alpha amylase catalytic sub domain K05343 - 3.2.1.1,5.4.99.16 0.0 1510.0
DYD3_k127_5758163_10 Ectoine hydroxylase K10674 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016705,GO:0016706,GO:0019752,GO:0032787,GO:0042399,GO:0042400,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:0072329,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 1.14.11.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 382.0
DYD3_k127_5758163_11 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007699 374.0
DYD3_k127_5758163_12 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 351.0
DYD3_k127_5758163_13 mechanosensitive ion channel K16052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 327.0
DYD3_k127_5758163_14 Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 321.0
DYD3_k127_5758163_15 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 301.0
DYD3_k127_5758163_16 ABC-type amino acid transport system permease component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 291.0
DYD3_k127_5758163_17 PFAM Conserved TM helix repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001108 279.0
DYD3_k127_5758163_18 ABC transporter permease K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002702 264.0
DYD3_k127_5758163_19 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000007446 256.0
DYD3_k127_5758163_2 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0 1122.0
DYD3_k127_5758163_20 LUD domain K00782 - - 0.00000000000000000000000000000000000000000000000000000000000000000003144 241.0
DYD3_k127_5758163_21 Catalyzes the circularization of gamma-N-acetyl- alpha,gamma-diaminobutyric acid (ADABA) to ectoine (1,4,5,6- tetrahydro-2-methyl-4-pyrimidine carboxylic acid), which is an excellent osmoprotectant K06720 - 4.2.1.108 0.00000000000000000000000000000000000000000000000000000000002407 209.0
DYD3_k127_5758163_22 transcriptional - - - 0.000000000000000000000000000000000000000000000000005563 188.0
DYD3_k127_5758163_23 L-2,4-diaminobutyric acid acetyltransferase K06718 - 2.3.1.178 0.00000000000000000000000000000000000000000000001414 179.0
DYD3_k127_5758163_24 Methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 0.0000000000002129 70.0
DYD3_k127_5758163_3 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.168e-315 977.0
DYD3_k127_5758163_4 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 1.357e-300 938.0
DYD3_k127_5758163_5 TIGRFAM malto-oligosyltrehalose trehalohydrolase K01236 - 3.2.1.141 9.187e-246 781.0
DYD3_k127_5758163_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00836 - 2.6.1.76 1.335e-199 630.0
DYD3_k127_5758163_7 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 588.0
DYD3_k127_5758163_8 serine protease K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 479.0
DYD3_k127_5758163_9 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 433.0
DYD3_k127_5759444_0 Glycosyltransferase 36 associated - - - 0.0 1270.0
DYD3_k127_5759444_1 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 2.438e-218 684.0
DYD3_k127_5759444_10 - - - - 0.000000000000000000000133 98.0
DYD3_k127_5759444_11 Glycine zipper 2TM domain K04062 - - 0.0000000000000000000002328 98.0
DYD3_k127_5759444_12 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000000000000003745 98.0
DYD3_k127_5759444_13 Protein of unknown function (DUF3309) - - - 0.000000000000000000002201 94.0
DYD3_k127_5759444_14 CsbD-like - - - 0.00000000000000002356 83.0
DYD3_k127_5759444_15 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000008059 70.0
DYD3_k127_5759444_16 Protein of unknown function (DUF3096) - - - 0.000000000008638 70.0
DYD3_k127_5759444_17 Collagen triple helix repeat (20 copies) - - - 0.00000006468 64.0
DYD3_k127_5759444_18 Glycine zipper 2TM domain - - - 0.0000148 54.0
DYD3_k127_5759444_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 407.0
DYD3_k127_5759444_3 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 349.0
DYD3_k127_5759444_4 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001399 282.0
DYD3_k127_5759444_5 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003071 264.0
DYD3_k127_5759444_6 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000000000000008589 228.0
DYD3_k127_5759444_7 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000000000000000006709 207.0
DYD3_k127_5759444_8 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000002104 202.0
DYD3_k127_5759444_9 ATP-grasp domain - - - 0.000000000000000000000000000000008213 149.0
DYD3_k127_5793104_0 Thiamine pyrophosphate enzyme, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 609.0
DYD3_k127_5793104_1 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 576.0
DYD3_k127_5793104_10 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007218 326.0
DYD3_k127_5793104_11 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 323.0
DYD3_k127_5793104_12 PFAM Patatin K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 317.0
DYD3_k127_5793104_13 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 313.0
DYD3_k127_5793104_14 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003467 262.0
DYD3_k127_5793104_15 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004709 258.0
DYD3_k127_5793104_16 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008018 259.0
DYD3_k127_5793104_17 Von Willebrand factor type A - - - 0.00000000000000000000000000000000000000000000000000000000000000007257 233.0
DYD3_k127_5793104_18 decarboxylase K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000001362 196.0
DYD3_k127_5793104_19 Domain of unknown function (DUF1993) K09983 - - 0.0000000000000000000000000000000000000000000000000001677 190.0
DYD3_k127_5793104_2 oxidoreductase activity K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 563.0
DYD3_k127_5793104_20 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.00000000000000000000000000000000000000000000000002167 198.0
DYD3_k127_5793104_21 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000000000000000004613 156.0
DYD3_k127_5793104_22 MAPEG family - - - 0.0000000000000000000000000000000000000004077 152.0
DYD3_k127_5793104_23 Carbon monoxide dehydrogenase subunit G (CoxG) - - - 0.00000000000000000000000000000000000004746 150.0
DYD3_k127_5793104_24 regulation of ryanodine-sensitive calcium-release channel activity - - - 0.0000000000000000000000002009 118.0
DYD3_k127_5793104_25 NfeD-like C-terminal, partner-binding - - - 0.0000000000000000001721 102.0
DYD3_k127_5793104_26 PFAM AMP-dependent synthetase and ligase - - - 0.00000000000000002022 97.0
DYD3_k127_5793104_27 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation - - - 0.000000000000006377 87.0
DYD3_k127_5793104_28 Family 5 K02035 - - 0.00000002548 62.0
DYD3_k127_5793104_29 - - - - 0.000002079 55.0
DYD3_k127_5793104_3 COG2951 Membrane-bound lytic murein transglycosylase B - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 481.0
DYD3_k127_5793104_4 COG0534 Na -driven multidrug efflux pump K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007439 430.0
DYD3_k127_5793104_5 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 390.0
DYD3_k127_5793104_6 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 383.0
DYD3_k127_5793104_7 Belongs to the CinA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 374.0
DYD3_k127_5793104_8 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008204 369.0
DYD3_k127_5793104_9 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 353.0
DYD3_k127_5844873_0 type IV-A pilus assembly ATPase PilB K02652 - - 5.444e-211 670.0
DYD3_k127_5844873_1 Sigma-54 interaction domain - - - 2.561e-205 649.0
DYD3_k127_5844873_10 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 413.0
DYD3_k127_5844873_11 Secretin and TonB N terminus short domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007767 432.0
DYD3_k127_5844873_12 TIGRFAM Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 394.0
DYD3_k127_5844873_13 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 308.0
DYD3_k127_5844873_14 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 306.0
DYD3_k127_5844873_15 ATPase activity, coupled to transmembrane movement of substances - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 298.0
DYD3_k127_5844873_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006611 286.0
DYD3_k127_5844873_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002499 228.0
DYD3_k127_5844873_18 P-aminobenzoate N-oxygenase AurF - - - 0.0000000000000000000000000000000000000000000000000000000000000008419 228.0
DYD3_k127_5844873_19 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000000000000000000000000000000001592 221.0
DYD3_k127_5844873_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008766 605.0
DYD3_k127_5844873_20 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000001613 223.0
DYD3_k127_5844873_21 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000001673 207.0
DYD3_k127_5844873_22 - - - - 0.000000000000000000000000000000000000000000000007236 187.0
DYD3_k127_5844873_23 - K01992 - - 0.00000000000000000000000000000000000000000000002137 183.0
DYD3_k127_5844873_24 belongs to the thioredoxin family K03671,K05838 - - 0.000000000000000000000000000000000000000003063 171.0
DYD3_k127_5844873_25 general secretion pathway protein - - - 0.00000000000000000000000000000000000000001436 164.0
DYD3_k127_5844873_26 BolA-like protein - - - 0.0000000000000000000000000008373 121.0
DYD3_k127_5844873_27 - - - - 0.00000000000000000000000001452 120.0
DYD3_k127_5844873_28 transporter antisigma-factor antagonist STAS K07122 - - 0.0000000000000000003915 96.0
DYD3_k127_5844873_29 Prokaryotic N-terminal methylation motif - - - 0.0000000000000000972 81.0
DYD3_k127_5844873_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 606.0
DYD3_k127_5844873_30 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000007919 71.0
DYD3_k127_5844873_4 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 490.0
DYD3_k127_5844873_5 PFAM type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004231 471.0
DYD3_k127_5844873_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 444.0
DYD3_k127_5844873_7 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 424.0
DYD3_k127_5844873_8 PFAM Sporulation domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000639 434.0
DYD3_k127_5844873_9 Luciferase-like monooxygenase K00494 - 1.14.14.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 420.0
DYD3_k127_5893116_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 1.143e-226 711.0
DYD3_k127_5893116_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009324 597.0
DYD3_k127_5893116_2 7 transmembrane helices usually fused to an inactive transglutaminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 415.0
DYD3_k127_5893116_3 Sugar-transfer associated ATP-grasp - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 383.0
DYD3_k127_5893116_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 354.0
DYD3_k127_5893116_5 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003066 271.0
DYD3_k127_5893116_6 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000000000000003572 213.0
DYD3_k127_5893116_7 protein conserved in bacteria K03690 - - 0.00000000000000000000000000000000000000008903 158.0
DYD3_k127_5893116_8 protein conserved in archaea - - - 0.000000000000000000000000000000002174 136.0
DYD3_k127_5893362_0 Pyridine nucleotide-disulphide oxidoreductase - - - 4.493e-305 941.0
DYD3_k127_5893362_1 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 7.057e-211 661.0
DYD3_k127_5893362_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K18356 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 557.0
DYD3_k127_5893362_3 HpcH/HpaI aldolase/citrate lyase family K02510 - 4.1.2.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 330.0
DYD3_k127_5893362_4 Pyruvate ferredoxin/flavodoxin oxidoreductase K18357 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000857 274.0
DYD3_k127_5893362_5 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001565 250.0
DYD3_k127_5893362_6 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.000000000000000000176 88.0
DYD3_k127_5932346_0 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0 1048.0
DYD3_k127_5932346_1 FAD-dependent pyridine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 521.0
DYD3_k127_5932346_10 Dihydrodipicolinate synthetase family K01714 - 4.3.3.7 0.0000000000000000000000004602 106.0
DYD3_k127_5932346_11 Mut7-C ubiquitin - - - 0.000000000000000000000001423 108.0
DYD3_k127_5932346_12 - - - - 0.000000000000000000008062 96.0
DYD3_k127_5932346_13 Taurine catabolism dioxygenase TauD, TfdA family K03119,K06912 - 1.14.11.17 0.0000000000004905 70.0
DYD3_k127_5932346_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 390.0
DYD3_k127_5932346_3 Belongs to the TPP enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 363.0
DYD3_k127_5932346_4 4Fe-4S dicluster domain K05796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 284.0
DYD3_k127_5932346_5 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002293 284.0
DYD3_k127_5932346_6 Belongs to the UPF0255 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001911 266.0
DYD3_k127_5932346_7 COG2513 PEP phosphonomutase and related enzymes K01637 GO:0003674,GO:0003824,GO:0004451,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046487,GO:0071704 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000004366 261.0
DYD3_k127_5932346_8 beta-N-acetylglucosaminidase K01197,K15719 GO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005488,GO:0005515,GO:0005975,GO:0006464,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009100,GO:0009987,GO:0015929,GO:0016231,GO:0016787,GO:0016798,GO:0019538,GO:0030246,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901135,GO:1901564 2.3.1.48,3.2.1.169,3.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000327 234.0
DYD3_k127_5932346_9 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000001519 228.0
DYD3_k127_5962438_0 FAD linked oxidases, C-terminal domain K18930 - - 0.0 1289.0
DYD3_k127_5962438_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009999 617.0
DYD3_k127_5962438_10 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001521 279.0
DYD3_k127_5962438_11 HD domain K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000006509 224.0
DYD3_k127_5962438_12 - - - - 0.00000000000000000000000000000000000000000000000000003541 196.0
DYD3_k127_5962438_13 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000001099 174.0
DYD3_k127_5962438_14 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000005382 164.0
DYD3_k127_5962438_15 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) - - - 0.00000000000000000000000000000000000006389 152.0
DYD3_k127_5962438_16 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000004866 90.0
DYD3_k127_5962438_2 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 565.0
DYD3_k127_5962438_3 glutamate--cysteine ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 529.0
DYD3_k127_5962438_4 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 466.0
DYD3_k127_5962438_5 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 449.0
DYD3_k127_5962438_6 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003757 422.0
DYD3_k127_5962438_7 PFAM Succinylglutamate desuccinylase Aspartoacylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009681 415.0
DYD3_k127_5962438_8 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 407.0
DYD3_k127_5962438_9 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 348.0
DYD3_k127_6006293_0 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365,K05366 - 2.4.1.129,3.4.16.4 7.165e-269 848.0
DYD3_k127_6006293_1 transport systems K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 356.0
DYD3_k127_6006293_2 serine-type endopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 320.0
DYD3_k127_6006293_3 mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 329.0
DYD3_k127_6006293_4 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 308.0
DYD3_k127_6006293_5 dipeptide transport K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000489 275.0
DYD3_k127_6006293_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000001341 126.0
DYD3_k127_6006293_7 Serine aminopeptidase, S33 - - - 0.00003188 47.0
DYD3_k127_6006293_8 Domain of unknown function (DUF4168) - - - 0.00007521 51.0
DYD3_k127_6006293_9 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0007477 48.0
DYD3_k127_6025626_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1056.0
DYD3_k127_6025626_1 Homospermidine synthase K00808 - 2.5.1.44 1.799e-209 661.0
DYD3_k127_6025626_10 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
DYD3_k127_6025626_11 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 362.0
DYD3_k127_6025626_12 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 303.0
DYD3_k127_6025626_13 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 293.0
DYD3_k127_6025626_14 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007186 298.0
DYD3_k127_6025626_15 Cytochrome C biogenesis protein transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002352 259.0
DYD3_k127_6025626_16 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007902 268.0
DYD3_k127_6025626_17 PFAM Methyltransferase type 12 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009494 256.0
DYD3_k127_6025626_18 Redoxin K02199 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008594 250.0
DYD3_k127_6025626_19 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002259 250.0
DYD3_k127_6025626_2 COG1012 NAD-dependent aldehyde dehydrogenases K04072,K13922 - 1.1.1.1,1.2.1.10,1.2.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 588.0
DYD3_k127_6025626_20 metal-dependent enzyme of the double-stranded beta helix superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000002717 230.0
DYD3_k127_6025626_21 cytochrome K08738 - - 0.000000000000000000000000000000000000000000000000000000000000000006522 231.0
DYD3_k127_6025626_22 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000242 227.0
DYD3_k127_6025626_23 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000006195 218.0
DYD3_k127_6025626_24 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000864 214.0
DYD3_k127_6025626_25 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000001503 206.0
DYD3_k127_6025626_26 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000000000000000000002416 200.0
DYD3_k127_6025626_27 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000003511 196.0
DYD3_k127_6025626_28 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000001776 186.0
DYD3_k127_6025626_29 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000000000000000006435 174.0
DYD3_k127_6025626_3 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 477.0
DYD3_k127_6025626_30 MerR, DNA binding K08365,K19591 - - 0.00000000000000000000000000000000000000000008038 164.0
DYD3_k127_6025626_31 - - - - 0.000000000000000000000000000000000004171 143.0
DYD3_k127_6025626_32 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.000000000000000000000000000000001627 136.0
DYD3_k127_6025626_33 Belongs to the UPF0255 family - - - 0.000000000000000000000000000000009803 136.0
DYD3_k127_6025626_34 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000007364 131.0
DYD3_k127_6025626_35 - - - - 0.00000000000000000000000000005203 122.0
DYD3_k127_6025626_36 Heavy-metal-associated domain K07213 - - 0.000000000000006663 83.0
DYD3_k127_6025626_37 AntiSigma factor - GO:0000988,GO:0000989,GO:0003674,GO:0005488,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009593,GO:0009628,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0042221,GO:0043167,GO:0043169,GO:0043934,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051606,GO:0051775,GO:0051776,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.0000000000003038 72.0
DYD3_k127_6025626_39 PFAM DsrE family protein K07235 - - 0.000043 53.0
DYD3_k127_6025626_4 Belongs to the succinate malate CoA ligase beta subunit family K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008111 461.0
DYD3_k127_6025626_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 452.0
DYD3_k127_6025626_6 NlpB/DapX lipoprotein K07287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 428.0
DYD3_k127_6025626_7 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004422 411.0
DYD3_k127_6025626_8 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005668 403.0
DYD3_k127_6025626_9 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 398.0
DYD3_k127_6057617_0 aldehyde-lyase activity K01621 - 4.1.2.22,4.1.2.9 0.0 1449.0
DYD3_k127_6057617_1 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.0 1259.0
DYD3_k127_6057617_10 Twin-arginine translocation pathway signal sequence - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009717 456.0
DYD3_k127_6057617_11 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004976 436.0
DYD3_k127_6057617_12 KR domain K00034 - 1.1.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149 428.0
DYD3_k127_6057617_13 ATPase associated with various cellular activities, AAA_5 K04748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009493 422.0
DYD3_k127_6057617_14 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 417.0
DYD3_k127_6057617_15 Histidine kinase K07638 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 404.0
DYD3_k127_6057617_16 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 362.0
DYD3_k127_6057617_17 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 355.0
DYD3_k127_6057617_18 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 321.0
DYD3_k127_6057617_19 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 325.0
DYD3_k127_6057617_2 Glycosyl hydrolase family 65, C-terminal domain K01838,K05342 - 2.4.1.64,5.4.2.6 0.0 1011.0
DYD3_k127_6057617_20 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005846 311.0
DYD3_k127_6057617_21 Peptidase M22 glycoprotease K14742 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003401 270.0
DYD3_k127_6057617_22 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001599 260.0
DYD3_k127_6057617_23 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000568 253.0
DYD3_k127_6057617_24 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000002245 191.0
DYD3_k127_6057617_25 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.0000000000000000000000000000000000000001672 157.0
DYD3_k127_6057617_26 Chalcone isomerase-like - - - 0.000000000000000000000000000000000001812 146.0
DYD3_k127_6057617_27 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000002503 150.0
DYD3_k127_6057617_28 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000007717 146.0
DYD3_k127_6057617_29 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000003818 138.0
DYD3_k127_6057617_3 Cytochrome c554 and c-prime - - - 1.313e-314 982.0
DYD3_k127_6057617_30 - - - - 0.000000000000000000000000000000000415 135.0
DYD3_k127_6057617_31 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000004329 134.0
DYD3_k127_6057617_32 Las17-binding protein actin regulator - - - 0.00000000000000000000000000185 119.0
DYD3_k127_6057617_33 - - - - 0.0000000000000000000002687 106.0
DYD3_k127_6057617_34 META domain K09914 - - 0.000000000000001411 82.0
DYD3_k127_6057617_35 protein involved in outer membrane biogenesis K07289,K07290 - - 0.000000000001268 83.0
DYD3_k127_6057617_36 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000008457 69.0
DYD3_k127_6057617_37 EF-hand domain pair - - - 0.000000005908 64.0
DYD3_k127_6057617_38 - - - - 0.00000003189 61.0
DYD3_k127_6057617_39 protein involved in outer membrane biogenesis K07289 - - 0.00000004386 68.0
DYD3_k127_6057617_4 Patatin-like phospholipase K07001 - - 7.222e-264 833.0
DYD3_k127_6057617_40 DNA-sulfur modification-associated - - - 0.00000009705 64.0
DYD3_k127_6057617_5 von Willebrand factor (vWF) type A domain - - - 3.195e-237 759.0
DYD3_k127_6057617_6 Glycosyl hydrolases family 15 - - - 1.3e-233 738.0
DYD3_k127_6057617_7 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 539.0
DYD3_k127_6057617_8 acyl-CoA transferases carnitine dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000867 497.0
DYD3_k127_6057617_9 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 485.0
DYD3_k127_6074381_0 ASPIC and UnbV - - - 2.242e-198 631.0
DYD3_k127_6074381_1 carnitine dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 562.0
DYD3_k127_6074381_2 COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 370.0
DYD3_k127_6074381_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004683 269.0
DYD3_k127_6074381_4 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003478 263.0
DYD3_k127_6074381_5 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000154 239.0
DYD3_k127_6074381_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000001528 230.0
DYD3_k127_6074381_7 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000001528 214.0
DYD3_k127_6076174_0 CoA-binding domain protein K01905,K22224 - 6.2.1.13 4.418e-228 727.0
DYD3_k127_6076174_1 Aconitase family (aconitate hydratase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 573.0
DYD3_k127_6076174_11 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000000000000000001786 140.0
DYD3_k127_6076174_12 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000008207 139.0
DYD3_k127_6076174_13 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 0.00000000000000003474 83.0
DYD3_k127_6076174_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 499.0
DYD3_k127_6076174_3 Acyl-CoA dehydrogenase, C-terminal domain K06446 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 405.0
DYD3_k127_6076174_4 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 358.0
DYD3_k127_6076174_5 dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 347.0
DYD3_k127_6076174_6 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 329.0
DYD3_k127_6076174_7 Enoyl-(Acyl carrier protein) reductase K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 288.0
DYD3_k127_6076174_8 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009693 258.0
DYD3_k127_6076174_9 - - - - 0.00000000000000000000000000000000000000000000000000000001163 203.0
DYD3_k127_621305_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1022.0
DYD3_k127_621305_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 2.299e-310 959.0
DYD3_k127_621305_10 depolymerase - - - 0.0000000000000000000000000000000000000000000000000000007231 204.0
DYD3_k127_621305_11 THIoesterase K18700 - 3.1.2.29 0.00000000000000000000000000000000000000000000000000002941 190.0
DYD3_k127_621305_12 Probable cobalt transporter subunit (CbtA) - - - 0.0000000000000000000000000000000000000000000000002222 184.0
DYD3_k127_621305_13 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000002943 143.0
DYD3_k127_621305_14 AAA domain (Cdc48 subfamily) - - - 0.0000000000000000000000000000000001338 132.0
DYD3_k127_621305_15 Cobalt transporter subunit CbtB - - - 0.0000003478 55.0
DYD3_k127_621305_2 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 3.699e-257 805.0
DYD3_k127_621305_3 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 585.0
DYD3_k127_621305_4 protein conserved in bacteria K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 577.0
DYD3_k127_621305_5 Ammonium Transporter K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 573.0
DYD3_k127_621305_6 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 464.0
DYD3_k127_621305_7 methylated-DNA- protein -cysteine S-methyltransferase K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 344.0
DYD3_k127_621305_8 Integral membrane protein TerC family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 322.0
DYD3_k127_621305_9 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 308.0
DYD3_k127_6216096_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003528 558.0
DYD3_k127_6216096_1 Binding-protein-dependent transport system inner membrane component K02033,K15585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007344 495.0
DYD3_k127_6216096_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 414.0
DYD3_k127_6216096_3 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 290.0
DYD3_k127_6216096_4 membrane transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008603 285.0
DYD3_k127_6216096_5 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01856,K01860,K19802 - 5.1.1.20,5.5.1.1,5.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000001521 256.0
DYD3_k127_6216096_6 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000418 123.0
DYD3_k127_621886_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 7.686e-206 645.0
DYD3_k127_621886_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004577 563.0
DYD3_k127_621886_2 Dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 411.0
DYD3_k127_621886_3 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001287 253.0
DYD3_k127_621886_4 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000236 211.0
DYD3_k127_621886_5 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000005923 144.0
DYD3_k127_6229602_0 Neisseria PilC beta-propeller domain K02674 - - 0.0 1149.0
DYD3_k127_6229602_1 Neisseria PilC beta-propeller domain K02674 - - 1.779e-312 994.0
DYD3_k127_6229602_10 protein transport across the cell outer membrane K08084 - - 0.0000000000000000000008584 102.0
DYD3_k127_6229602_2 Type IV Pilus-assembly protein W K02672 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001099 290.0
DYD3_k127_6229602_3 Type IV Pilus-assembly protein W K02672 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002821 278.0
DYD3_k127_6229602_4 Pilus assembly protein PilX - - - 0.00000000000000000000000000000000000000000005361 167.0
DYD3_k127_6229602_5 Pilus assembly protein PilX - - - 0.0000000000000000000000000000000000000000006245 168.0
DYD3_k127_6229602_6 type IV pilus modification protein PilV K02671 - - 0.000000000000000000000000000000000000004011 151.0
DYD3_k127_6229602_7 type IV pilus modification protein PilV K02671 - - 0.0000000000000000000000000000000006691 138.0
DYD3_k127_6229602_8 Type II transport protein GspH K08084 - - 0.00000000000000000000000000000001788 132.0
DYD3_k127_6229602_9 Prokaryotic N-terminal methylation motif K02655 - - 0.000000000000000000000101 107.0
DYD3_k127_6250127_0 PFAM AMP-dependent synthetase and ligase - - - 1.939e-211 670.0
DYD3_k127_6250127_1 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009181 568.0
DYD3_k127_6250127_10 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 335.0
DYD3_k127_6250127_11 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008513 306.0
DYD3_k127_6250127_12 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001072 237.0
DYD3_k127_6250127_13 transporter component K07112 - - 0.00000000000000000000000000000000000000000000000000000000000009856 216.0
DYD3_k127_6250127_14 transporter component K07112 - - 0.0000000000000000000000000000000000000000000000000000003932 203.0
DYD3_k127_6250127_15 YHS domain protein - - - 0.0000000000000000000000000000000000000000000326 165.0
DYD3_k127_6250127_16 - - - - 0.00000000000000000000000000000000000000000003917 176.0
DYD3_k127_6250127_18 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000002505 151.0
DYD3_k127_6250127_19 Cupin domain - - - 0.000000000000000000000000007287 124.0
DYD3_k127_6250127_2 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 438.0
DYD3_k127_6250127_20 Cupin domain - - - 0.00000000000000006948 93.0
DYD3_k127_6250127_22 2OG-Fe(II) oxygenase superfamily - - - 0.000000000008552 74.0
DYD3_k127_6250127_23 LTXXQ motif family protein - - - 0.0000000001735 70.0
DYD3_k127_6250127_3 Histidine kinase K05962 - 2.7.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025 460.0
DYD3_k127_6250127_4 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023 399.0
DYD3_k127_6250127_5 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 395.0
DYD3_k127_6250127_6 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 392.0
DYD3_k127_6250127_7 PFAM Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 375.0
DYD3_k127_6250127_8 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 365.0
DYD3_k127_6250127_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 357.0
DYD3_k127_6260957_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1590.0
DYD3_k127_6260957_1 Required for chromosome condensation and partitioning K03529 - - 0.0 1084.0
DYD3_k127_6260957_10 PFAM aminotransferase, class I K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 556.0
DYD3_k127_6260957_11 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 549.0
DYD3_k127_6260957_12 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009742 548.0
DYD3_k127_6260957_13 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 532.0
DYD3_k127_6260957_14 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 491.0
DYD3_k127_6260957_15 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 473.0
DYD3_k127_6260957_16 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 458.0
DYD3_k127_6260957_17 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 448.0
DYD3_k127_6260957_18 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 443.0
DYD3_k127_6260957_19 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 435.0
DYD3_k127_6260957_2 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.106e-319 985.0
DYD3_k127_6260957_20 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 424.0
DYD3_k127_6260957_21 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 411.0
DYD3_k127_6260957_22 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 404.0
DYD3_k127_6260957_23 Polysaccharide deacetylase K22278 - 3.5.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 403.0
DYD3_k127_6260957_24 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 400.0
DYD3_k127_6260957_25 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 398.0
DYD3_k127_6260957_26 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 392.0
DYD3_k127_6260957_27 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 392.0
DYD3_k127_6260957_28 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003576 368.0
DYD3_k127_6260957_29 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772,K03815 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 360.0
DYD3_k127_6260957_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 1.391e-314 980.0
DYD3_k127_6260957_30 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000594 357.0
DYD3_k127_6260957_31 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 364.0
DYD3_k127_6260957_32 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 333.0
DYD3_k127_6260957_33 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008458 323.0
DYD3_k127_6260957_34 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 326.0
DYD3_k127_6260957_35 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 316.0
DYD3_k127_6260957_36 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 304.0
DYD3_k127_6260957_37 Cation efflux family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 295.0
DYD3_k127_6260957_38 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001485 278.0
DYD3_k127_6260957_39 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004638 273.0
DYD3_k127_6260957_4 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 9.919e-312 977.0
DYD3_k127_6260957_40 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002657 270.0
DYD3_k127_6260957_41 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002752 275.0
DYD3_k127_6260957_42 RNA cap guanine-N2 methyltransferase K07320 - 2.1.1.298 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005044 279.0
DYD3_k127_6260957_43 MucB/RseB C-terminal domain K03598 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003691 276.0
DYD3_k127_6260957_44 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000189 258.0
DYD3_k127_6260957_45 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000001089 240.0
DYD3_k127_6260957_46 methyltransferase K03437 - - 0.00000000000000000000000000000000000000000000000000000000000000001284 242.0
DYD3_k127_6260957_47 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000002236 222.0
DYD3_k127_6260957_48 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000003595 226.0
DYD3_k127_6260957_49 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000108 216.0
DYD3_k127_6260957_5 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 1.4e-289 899.0
DYD3_k127_6260957_50 DsrE/DsrF-like family - - - 0.0000000000000000000000000000000000000000000000000000000000001966 213.0
DYD3_k127_6260957_51 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000002859 213.0
DYD3_k127_6260957_52 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000000001109 173.0
DYD3_k127_6260957_53 Belongs to the skp family K06142 - - 0.0000000000000000000000000000000000000000000003104 172.0
DYD3_k127_6260957_54 Copper resistance protein D - - - 0.0000000000000000000000000000000000001252 149.0
DYD3_k127_6260957_55 PFAM Anti sigma-E protein RseA family protein K03597 - - 0.000000000000000000000000001744 118.0
DYD3_k127_6260957_56 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.000000000000000000000000004573 115.0
DYD3_k127_6260957_57 Domain of unknown function (DUF4845) - - - 0.000000000000000000008013 98.0
DYD3_k127_6260957_58 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000001054 55.0
DYD3_k127_6260957_6 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 4.695e-271 849.0
DYD3_k127_6260957_7 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 3.735e-220 689.0
DYD3_k127_6260957_8 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822,K00833 - 2.6.1.18,2.6.1.62 3.181e-205 647.0
DYD3_k127_6260957_9 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 583.0
DYD3_k127_6294576_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1144.0
DYD3_k127_6294576_1 acyl-CoA dehydrogenase K06445 - - 6.55e-321 1000.0
DYD3_k127_6294576_10 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002525 367.0
DYD3_k127_6294576_11 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 368.0
DYD3_k127_6294576_12 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 348.0
DYD3_k127_6294576_13 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008239 334.0
DYD3_k127_6294576_14 phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 327.0
DYD3_k127_6294576_15 Enoyl-CoA hydratase/isomerase K15313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000485 251.0
DYD3_k127_6294576_16 Thioesterase superfamily protein K10806 - - 0.0000000000000000000000000000000000000000000000000000006552 194.0
DYD3_k127_6294576_2 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 6.968e-281 871.0
DYD3_k127_6294576_3 AMP-dependent synthetase K01897 - 6.2.1.3 5.359e-231 729.0
DYD3_k127_6294576_4 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 8.665e-224 698.0
DYD3_k127_6294576_5 Belongs to the thiolase family K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 591.0
DYD3_k127_6294576_6 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 514.0
DYD3_k127_6294576_7 Protein conserved in bacteria K16514 - 5.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009271 428.0
DYD3_k127_6294576_8 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 426.0
DYD3_k127_6294576_9 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 413.0
DYD3_k127_6360203_0 COG3039 Transposase and inactivated derivatives, IS5 family K07481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 310.0
DYD3_k127_6360203_1 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000006279 265.0
DYD3_k127_6360203_2 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000003025 228.0
DYD3_k127_6366470_0 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002781 263.0
DYD3_k127_6366470_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000001191 246.0
DYD3_k127_6366470_2 Protein of unknown function (DUF3014) - - - 0.0000000000000000000000000000000000000000000000000000000000000002691 229.0
DYD3_k127_6366470_3 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000008864 214.0
DYD3_k127_6366470_4 XdhC and CoxI family - - - 0.0000000000000000000000000000000000002364 144.0
DYD3_k127_6366470_5 DoxX K15977 - - 0.0000000000000005903 78.0
DYD3_k127_6366470_6 spore germination - - - 0.00000002016 65.0
DYD3_k127_6366470_7 - - - - 0.0001803 47.0
DYD3_k127_6366935_0 DNA-binding domain of Proline dehydrogenase K13821 - 1.2.1.88,1.5.5.2 4.918e-294 936.0
DYD3_k127_6366935_1 Coenzyme A transferase K01027,K01029,K01032 - 2.8.3.5,2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 546.0
DYD3_k127_6366935_10 Transcriptional regulator - - - 0.0000000000000000000000002116 107.0
DYD3_k127_6366935_11 Belongs to the UPF0276 family K09930 - - 0.0000000000000000004936 93.0
DYD3_k127_6366935_12 - - - - 0.000000000000000004033 86.0
DYD3_k127_6366935_2 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 447.0
DYD3_k127_6366935_3 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 448.0
DYD3_k127_6366935_4 NAD(P)H-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000397 263.0
DYD3_k127_6366935_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000001501 227.0
DYD3_k127_6366935_6 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000001745 208.0
DYD3_k127_6366935_7 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000005916 184.0
DYD3_k127_6366935_8 Glycine-zipper domain - - - 0.000000000000000000000000000000000000000000000001265 180.0
DYD3_k127_6366935_9 peptidase S15 K06978 - - 0.000000000000000000000000000000000000000000000007572 196.0
DYD3_k127_6371818_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 4.84e-256 799.0
DYD3_k127_6371818_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 2.77e-238 754.0
DYD3_k127_6371818_10 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 346.0
DYD3_k127_6371818_11 TIGRFAM phytoene desaturase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004583 321.0
DYD3_k127_6371818_12 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001468 284.0
DYD3_k127_6371818_13 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000002815 267.0
DYD3_k127_6371818_14 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000002578 258.0
DYD3_k127_6371818_15 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0032843,GO:0033554,GO:0034599,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000005491 235.0
DYD3_k127_6371818_16 Appr-1'-p processing enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000001301 222.0
DYD3_k127_6371818_17 COG3245 Cytochrome c5 - - - 0.00000000000000000000000000000000000000000000000000000000000001372 226.0
DYD3_k127_6371818_18 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000004573 222.0
DYD3_k127_6371818_19 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000000000000000006656 201.0
DYD3_k127_6371818_2 Thi4 family - - - 4.613e-223 703.0
DYD3_k127_6371818_20 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000000000000000000000000000009717 207.0
DYD3_k127_6371818_21 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000005325 195.0
DYD3_k127_6371818_22 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000000000001076 185.0
DYD3_k127_6371818_23 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.0000000000000000000000000000000000000000002078 164.0
DYD3_k127_6371818_24 - - - - 0.0000000000000000000000000000004556 127.0
DYD3_k127_6371818_25 zinc-ribbon domain - - - 0.00000000000000000000000000000373 128.0
DYD3_k127_6371818_26 MAPEG family - - - 0.00000000000000000000000000003485 123.0
DYD3_k127_6371818_27 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 0.000000000000000001267 85.0
DYD3_k127_6371818_28 alginic acid biosynthetic process K10297 - - 0.000005367 48.0
DYD3_k127_6371818_3 Oxidoreductase - - - 1.909e-222 700.0
DYD3_k127_6371818_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 601.0
DYD3_k127_6371818_5 PFAM PfkB domain protein K00852,K00856 - 2.7.1.15,2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 485.0
DYD3_k127_6371818_6 Glycine cleavage T-protein C-terminal barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 458.0
DYD3_k127_6371818_7 The glycine cleavage system catalyzes the degradation of glycine K00605 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005946 430.0
DYD3_k127_6371818_8 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 398.0
DYD3_k127_6371818_9 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007962 381.0
DYD3_k127_6373592_0 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 381.0
DYD3_k127_6373592_1 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009483 322.0
DYD3_k127_6373592_2 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 302.0
DYD3_k127_6373592_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003034 269.0
DYD3_k127_6373592_4 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000004427 153.0
DYD3_k127_6373592_5 Alpha/beta hydrolase family - - - 0.000000000000000000000000005796 112.0
DYD3_k127_6381597_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 1.732e-220 699.0
DYD3_k127_6381597_1 Peptidase M50 K16922 - - 9.193e-210 677.0
DYD3_k127_6381597_10 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009972 407.0
DYD3_k127_6381597_11 Taurine catabolism dioxygenase TauD, TfdA family K06912 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 404.0
DYD3_k127_6381597_12 OmpA MotB K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 408.0
DYD3_k127_6381597_13 abc transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 389.0
DYD3_k127_6381597_14 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009359 366.0
DYD3_k127_6381597_15 C-terminal domain of 1-Cys peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 364.0
DYD3_k127_6381597_16 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 359.0
DYD3_k127_6381597_17 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 333.0
DYD3_k127_6381597_18 MotA TolQ ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007096 344.0
DYD3_k127_6381597_19 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 334.0
DYD3_k127_6381597_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 8.518e-201 641.0
DYD3_k127_6381597_20 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 329.0
DYD3_k127_6381597_21 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 321.0
DYD3_k127_6381597_22 Aldo/keto reductase family K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 321.0
DYD3_k127_6381597_23 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 298.0
DYD3_k127_6381597_24 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004105 280.0
DYD3_k127_6381597_25 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003394 286.0
DYD3_k127_6381597_26 dehydratase K18290 - 4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005043 270.0
DYD3_k127_6381597_27 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001562 276.0
DYD3_k127_6381597_28 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001651 254.0
DYD3_k127_6381597_29 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002755 250.0
DYD3_k127_6381597_3 outer membrane efflux protein - - - 2.094e-197 635.0
DYD3_k127_6381597_30 D-alanyl-D-alanine carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005637 246.0
DYD3_k127_6381597_31 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000004748 238.0
DYD3_k127_6381597_32 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000000002366 233.0
DYD3_k127_6381597_33 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000003432 237.0
DYD3_k127_6381597_34 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000000000000000003553 226.0
DYD3_k127_6381597_35 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000004797 240.0
DYD3_k127_6381597_36 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000000000000000002124 215.0
DYD3_k127_6381597_37 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000000000001953 205.0
DYD3_k127_6381597_38 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K02876 - - 0.00000000000000000000000000000000000000000000000000000009917 199.0
DYD3_k127_6381597_39 MmgE PrpD family protein - - - 0.0000000000000000000000000000000000000000000000000000179 205.0
DYD3_k127_6381597_4 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 566.0
DYD3_k127_6381597_40 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000001924 209.0
DYD3_k127_6381597_41 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000000001858 188.0
DYD3_k127_6381597_42 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000004486 192.0
DYD3_k127_6381597_43 (GGDEF) domain - - - 0.00000000000000000000000000000000000000000000159 178.0
DYD3_k127_6381597_44 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000001831 168.0
DYD3_k127_6381597_45 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000004029 171.0
DYD3_k127_6381597_46 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000004555 172.0
DYD3_k127_6381597_47 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000006127 164.0
DYD3_k127_6381597_48 Bacterial extracellular solute-binding protein K22003 - 5.3.3.7 0.0000000000000000000000000000000000000000001339 170.0
DYD3_k127_6381597_49 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000003948 150.0
DYD3_k127_6381597_5 Amidohydrolase K03392,K10220 - 4.1.1.45,4.2.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 540.0
DYD3_k127_6381597_50 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000006579 154.0
DYD3_k127_6381597_51 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000001254 143.0
DYD3_k127_6381597_52 Universal stress protein - - - 0.000000000000000000000000000001125 126.0
DYD3_k127_6381597_53 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000001275 125.0
DYD3_k127_6381597_54 Class ii aldolase K01628 - 4.1.2.17 0.00000000000000000000000000007245 126.0
DYD3_k127_6381597_55 Ribosomal protein L30p/L7e K02907 - - 0.00000000000000000001603 94.0
DYD3_k127_6381597_56 Phospholipase_D-nuclease N-terminal - - - 0.0000000000000000006966 91.0
DYD3_k127_6381597_57 protein kinase activity - - - 0.00000000000000001308 97.0
DYD3_k127_6381597_58 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000001664 80.0
DYD3_k127_6381597_59 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000005456 74.0
DYD3_k127_6381597_6 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 509.0
DYD3_k127_6381597_60 - - - - 0.000000000005728 76.0
DYD3_k127_6381597_61 Sel1-like repeats. - - - 0.00000000001907 73.0
DYD3_k127_6381597_62 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000005058 66.0
DYD3_k127_6381597_7 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 488.0
DYD3_k127_6381597_8 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 495.0
DYD3_k127_6381597_9 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 443.0
DYD3_k127_6389551_0 Transmembrane secretion effector - - - 1.969e-255 802.0
DYD3_k127_6389551_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 5.012e-237 739.0
DYD3_k127_6389551_10 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 461.0
DYD3_k127_6389551_11 Nucleoside H+ symporter K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 371.0
DYD3_k127_6389551_12 pilus assembly protein FimV K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 389.0
DYD3_k127_6389551_13 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 348.0
DYD3_k127_6389551_14 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 347.0
DYD3_k127_6389551_15 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 345.0
DYD3_k127_6389551_16 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005478 268.0
DYD3_k127_6389551_17 alpha beta - - - 0.00000000000000000000000000000000000000000000000005075 187.0
DYD3_k127_6389551_18 Colicin V production K03558 - - 0.000000000000000000000000000000000000000007253 163.0
DYD3_k127_6389551_19 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000002466 137.0
DYD3_k127_6389551_2 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 5.926e-223 694.0
DYD3_k127_6389551_20 Sporulation related domain K03749 - - 0.000000000000000000000000006653 117.0
DYD3_k127_6389551_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 4.656e-195 614.0
DYD3_k127_6389551_4 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 595.0
DYD3_k127_6389551_5 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 570.0
DYD3_k127_6389551_6 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004073,GO:0006082,GO:0006520,GO:0006549,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 534.0
DYD3_k127_6389551_7 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008482 520.0
DYD3_k127_6389551_8 PFAM Mur ligase middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 487.0
DYD3_k127_6389551_9 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 464.0
DYD3_k127_6432025_0 aconitate hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 512.0
DYD3_k127_6432025_1 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 494.0
DYD3_k127_6432025_2 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 444.0
DYD3_k127_6432025_3 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004123 269.0
DYD3_k127_6432025_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000309 210.0
DYD3_k127_6432025_5 - - - - 0.000000000000000000000000000000000004171 143.0
DYD3_k127_6432025_6 Cupin 2, conserved barrel domain protein K21700 - - 0.0000000000000000000000007891 109.0
DYD3_k127_6432025_7 Histidine kinase - - - 0.00001237 55.0
DYD3_k127_6432025_8 cytochrome p450 - - - 0.0001022 49.0
DYD3_k127_6479404_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 610.0
DYD3_k127_6479404_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008989 582.0
DYD3_k127_6479404_10 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 317.0
DYD3_k127_6479404_11 regulatory protein GntR HTH - - - 0.000000000000000000000000000000000000000000000000000000008628 219.0
DYD3_k127_6479404_12 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.000000000000000000000000000000000000000000000008322 173.0
DYD3_k127_6479404_13 Polysaccharide deacetylase K00365,K01452 GO:0000003,GO:0000272,GO:0003006,GO:0005575,GO:0005618,GO:0005619,GO:0005623,GO:0005631,GO:0005975,GO:0005976,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006037,GO:0006039,GO:0006040,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009272,GO:0009277,GO:0009653,GO:0009987,GO:0010383,GO:0010927,GO:0016043,GO:0016052,GO:0016998,GO:0017144,GO:0019953,GO:0022402,GO:0022411,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030437,GO:0030476,GO:0031160,GO:0031505,GO:0032502,GO:0032505,GO:0032989,GO:0034218,GO:0034232,GO:0034293,GO:0042244,GO:0042546,GO:0042737,GO:0043170,GO:0043934,GO:0043935,GO:0044036,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044277,GO:0044426,GO:0044462,GO:0044464,GO:0044703,GO:0045229,GO:0046348,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051321,GO:0051704,GO:0070590,GO:0070591,GO:0070726,GO:0070910,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071853,GO:0071854,GO:0071940,GO:0071944,GO:0071966,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903046 1.7.3.3,3.5.1.41 0.0000000000000000000000000000000000000000000363 175.0
DYD3_k127_6479404_2 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 559.0
DYD3_k127_6479404_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009747 552.0
DYD3_k127_6479404_4 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 543.0
DYD3_k127_6479404_5 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 527.0
DYD3_k127_6479404_6 Peptidase family M28 K02083 - 3.5.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 499.0
DYD3_k127_6479404_7 Polysaccharide deacetylase K01452 - 3.5.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 472.0
DYD3_k127_6479404_8 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 364.0
DYD3_k127_6479404_9 Bacterial extracellular solute-binding protein K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 359.0
DYD3_k127_6481241_0 TIGRFAM cytochrome c-type biogenesis protein CcmF K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 531.0
DYD3_k127_6481241_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701 394.0
DYD3_k127_6481241_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 308.0
DYD3_k127_6481241_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002182 274.0
DYD3_k127_6481241_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000000002134 219.0
DYD3_k127_6481241_5 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000005776 206.0
DYD3_k127_6481241_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.0000000000000000000000000007939 117.0
DYD3_k127_6481241_7 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.0000000002988 66.0
DYD3_k127_6648454_0 Ribonuclease E/G family K08301 - - 1.186e-224 704.0
DYD3_k127_6648454_1 twitching motility protein K02670 - - 1.443e-206 646.0
DYD3_k127_6648454_2 twitching motility protein K02669 - - 5.513e-197 616.0
DYD3_k127_6648454_3 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005902 287.0
DYD3_k127_6648454_4 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006279 265.0
DYD3_k127_6648454_5 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000000009347 228.0
DYD3_k127_6648454_6 YGGT family K02221 - - 0.000000000000000000000000000000000000000000000000005138 188.0
DYD3_k127_6648454_7 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000000000000000108 184.0
DYD3_k127_6648454_8 Belongs to the UPF0235 family K09131 - - 0.0000000000000000004316 90.0
DYD3_k127_6656572_0 AcrB/AcrD/AcrF family - - - 0.0 1038.0
DYD3_k127_6656572_1 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01539 - 3.6.3.9 0.0 1018.0
DYD3_k127_6656572_10 ROK family K00886 - 2.7.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 333.0
DYD3_k127_6656572_11 PFAM Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064 315.0
DYD3_k127_6656572_12 Tetratricopeptide repeat K02200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 304.0
DYD3_k127_6656572_13 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 292.0
DYD3_k127_6656572_14 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000024 269.0
DYD3_k127_6656572_15 Mut7-C RNAse domain K09122 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009168 265.0
DYD3_k127_6656572_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003749 257.0
DYD3_k127_6656572_17 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009107 253.0
DYD3_k127_6656572_18 cell redox homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000278 250.0
DYD3_k127_6656572_19 oxidoreductase DsbE K02199 - - 0.000000000000000000000000000000000000000000000000000000000000002113 222.0
DYD3_k127_6656572_2 abc transporter K06020 - 3.6.3.25 1.385e-291 908.0
DYD3_k127_6656572_20 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.00000000000000000000000000000000000000000000000000000000000001258 225.0
DYD3_k127_6656572_21 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000003962 203.0
DYD3_k127_6656572_22 - - - - 0.000000000000000000000000000000000000000000000000000004595 199.0
DYD3_k127_6656572_23 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000004328 199.0
DYD3_k127_6656572_24 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000001062 194.0
DYD3_k127_6656572_25 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.00000000000000000000000000000000000000000000000436 182.0
DYD3_k127_6656572_26 cytochrome c5 - - - 0.0000000000000000000000000000000000000000000005534 180.0
DYD3_k127_6656572_27 subunit of a heme lyase K02200 - - 0.00000000000000000000000000000000000000000002045 166.0
DYD3_k127_6656572_28 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000006653 141.0
DYD3_k127_6656572_29 Cytochrome c - - - 0.00000000000000000000000000000000003751 147.0
DYD3_k127_6656572_3 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 2.785e-285 885.0
DYD3_k127_6656572_30 Belongs to the TPP enzyme family - - - 0.000000000000000000000000000001013 135.0
DYD3_k127_6656572_31 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000001427 121.0
DYD3_k127_6656572_32 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K04013,K15876 - - 0.00000000000000000000001554 112.0
DYD3_k127_6656572_33 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.0000000000000000000001563 104.0
DYD3_k127_6656572_34 - - - - 0.000000000000000000001506 107.0
DYD3_k127_6656572_35 COG2863 Cytochrome c553 - - - 0.0000000000000000004176 100.0
DYD3_k127_6656572_36 Cytochrome c7 and related cytochrome c - - - 0.000000000001493 70.0
DYD3_k127_6656572_37 Carboxymuconolactone decarboxylase family - - - 0.00000002209 60.0
DYD3_k127_6656572_38 PFAM Carboxymuconolactone decarboxylase - - - 0.00000005169 63.0
DYD3_k127_6656572_39 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00002568 49.0
DYD3_k127_6656572_4 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.068e-283 892.0
DYD3_k127_6656572_40 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.00005069 56.0
DYD3_k127_6656572_5 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 587.0
DYD3_k127_6656572_6 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 490.0
DYD3_k127_6656572_7 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 457.0
DYD3_k127_6656572_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 369.0
DYD3_k127_6656572_9 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 355.0
DYD3_k127_6657591_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 6.637e-313 970.0
DYD3_k127_6657591_1 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 333.0
DYD3_k127_6657591_10 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.0000000000000000000000000000007668 131.0
DYD3_k127_6657591_11 Insecticide toxin TcdB middle/C-terminal region - - - 0.000000000000000000001445 99.0
DYD3_k127_6657591_12 - - - - 0.000000000000008309 80.0
DYD3_k127_6657591_13 - - - - 0.00000000000003529 82.0
DYD3_k127_6657591_14 Oxidoreductase-like protein, N-terminal - - - 0.000000001835 61.0
DYD3_k127_6657591_2 Threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 324.0
DYD3_k127_6657591_3 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000007891 220.0
DYD3_k127_6657591_4 - - - - 0.000000000000000000000000000000000000000000000000000000000003675 219.0
DYD3_k127_6657591_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000003399 188.0
DYD3_k127_6657591_6 TIGRFAM phosphonate ABC transporter, inner membrane subunit K02042 - - 0.00000000000000000000000000000000000000000001714 162.0
DYD3_k127_6657591_7 Cyclophilin-like K09143 - - 0.00000000000000000000000000000000000000000003628 166.0
DYD3_k127_6657591_8 Protein of unknown function (DUF2946) - - - 0.0000000000000000000000000000000000000000007132 164.0
DYD3_k127_6657591_9 PFAM Lytic transglycosylase catalytic - - - 0.0000000000000000000000000000000000007469 149.0
DYD3_k127_6671897_0 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007578 526.0
DYD3_k127_6671897_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 504.0
DYD3_k127_6671897_11 SnoaL-like polyketide cyclase - - - 0.000000000000000000000001731 108.0
DYD3_k127_6671897_12 AraC-like ligand binding domain - - - 0.00000000000000000000006582 110.0
DYD3_k127_6671897_13 - - - - 0.000000000000000000004852 97.0
DYD3_k127_6671897_14 Belongs to the skp family K06142 - - 0.00000000000000001082 94.0
DYD3_k127_6671897_15 - - - - 0.00000000000006656 78.0
DYD3_k127_6671897_16 OsmC-like protein - - - 0.0000000000002415 73.0
DYD3_k127_6671897_18 Cupin domain - - - 0.000000006679 63.0
DYD3_k127_6671897_2 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 366.0
DYD3_k127_6671897_3 Protein of unknown function (DUF1847) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 338.0
DYD3_k127_6671897_4 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002309 282.0
DYD3_k127_6671897_5 Taurine catabolism dioxygenase TauD, TfdA family K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002439 280.0
DYD3_k127_6671897_6 PFAM amine oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007898 279.0
DYD3_k127_6671897_7 DinB family - - - 0.0000000000000000000000000000000000000000000000000000001044 205.0
DYD3_k127_6671897_8 Thioesterase superfamily K07107 - - 0.000000000000000000000000000000001666 134.0
DYD3_k127_6671897_9 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.0000000000000000000000000000006098 124.0
DYD3_k127_6717201_0 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008772 524.0
DYD3_k127_6717201_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004896 437.0
DYD3_k127_6717201_2 Coenzyme A transferase K01040 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 406.0
DYD3_k127_6717201_3 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 335.0
DYD3_k127_6717201_4 PFAM NAD binding domain of 6-phosphogluconate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004212 276.0
DYD3_k127_6717201_5 Coenzyme A transferase K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000001276 193.0
DYD3_k127_6717201_6 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000000000004971 165.0
DYD3_k127_6717201_7 PFAM extracellular solute-binding protein family 3 K02030,K10001 - - 0.000000000000000000000000000000000000001381 150.0
DYD3_k127_6717201_8 Pfam:Pyridox_oxidase - - - 0.000000000000000000000000000000004574 133.0
DYD3_k127_6736456_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0 1035.0
DYD3_k127_6736456_1 TonB dependent receptor K02014 - - 8.524e-218 696.0
DYD3_k127_6736456_10 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01760 - 4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 456.0
DYD3_k127_6736456_11 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 439.0
DYD3_k127_6736456_12 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 443.0
DYD3_k127_6736456_13 Malate/L-lactate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007101 439.0
DYD3_k127_6736456_14 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 419.0
DYD3_k127_6736456_15 TIGRFAM 3-hydroxybutyrate dehydrogenase K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 386.0
DYD3_k127_6736456_16 phosphogluconate dehydrogenase (decarboxylating) activity K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004606 367.0
DYD3_k127_6736456_17 PFAM Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007767 357.0
DYD3_k127_6736456_18 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 347.0
DYD3_k127_6736456_19 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 338.0
DYD3_k127_6736456_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 7.783e-209 676.0
DYD3_k127_6736456_20 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 340.0
DYD3_k127_6736456_21 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 330.0
DYD3_k127_6736456_22 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 305.0
DYD3_k127_6736456_23 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000278 252.0
DYD3_k127_6736456_24 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000002599 263.0
DYD3_k127_6736456_25 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000009588 229.0
DYD3_k127_6736456_26 Enoyl-CoA hydratase/isomerase K01661,K07536 - 4.1.3.36 0.0000000000000000000000000000000000000000000000000000000000000005415 231.0
DYD3_k127_6736456_27 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000274 208.0
DYD3_k127_6736456_28 toluene tolerance family protein K07323 - - 0.0000000000000000000000000000000000000000299 163.0
DYD3_k127_6736456_29 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000000000037 147.0
DYD3_k127_6736456_3 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 4.149e-200 649.0
DYD3_k127_6736456_30 Protein PsiE homolog K13256 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000001109 137.0
DYD3_k127_6736456_31 PFAM 17 kDa surface antigen - - - 0.0000000000000000000000000000000005963 141.0
DYD3_k127_6736456_32 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000001516 108.0
DYD3_k127_6736456_33 ThiS family K03154 - - 0.0000000000000000003724 94.0
DYD3_k127_6736456_35 - - - - 0.000000000007201 69.0
DYD3_k127_6736456_36 - - - - 0.00000008695 57.0
DYD3_k127_6736456_4 Sigma-54 interaction domain K07715 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 593.0
DYD3_k127_6736456_5 hydrolases or acyltransferases, alpha beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 593.0
DYD3_k127_6736456_6 Pyridoxal-phosphate dependent enzyme K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 531.0
DYD3_k127_6736456_7 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 524.0
DYD3_k127_6736456_8 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 518.0
DYD3_k127_6736456_9 general L-amino acid-binding periplasmic protein AapJ K09969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 503.0
DYD3_k127_6947909_0 Extracellular solute-binding protein - - - 3.715e-319 991.0
DYD3_k127_6947909_1 Belongs to the ABC transporter superfamily K02031,K02032 - - 7.031e-274 861.0
DYD3_k127_6947909_10 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000002488 235.0
DYD3_k127_6947909_11 Phage integrase family - - - 0.000000000000000000000000000000000000000000000000000000001119 208.0
DYD3_k127_6947909_12 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000003386 203.0
DYD3_k127_6947909_14 Belongs to the 'phage' integrase family - - - 0.000001155 57.0
DYD3_k127_6947909_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 589.0
DYD3_k127_6947909_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 479.0
DYD3_k127_6947909_4 LysM domain K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 387.0
DYD3_k127_6947909_5 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 323.0
DYD3_k127_6947909_6 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 317.0
DYD3_k127_6947909_7 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 301.0
DYD3_k127_6947909_8 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 287.0
DYD3_k127_6947909_9 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009136 282.0
DYD3_k127_6953622_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 5.897e-227 711.0
DYD3_k127_6953622_1 Uncharacterized protein family UPF0004 K06168 - 2.8.4.3 2.138e-212 669.0
DYD3_k127_6953622_10 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 357.0
DYD3_k127_6953622_12 Glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 325.0
DYD3_k127_6953622_13 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002967 321.0
DYD3_k127_6953622_14 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001312 283.0
DYD3_k127_6953622_15 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007851 274.0
DYD3_k127_6953622_16 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004565 248.0
DYD3_k127_6953622_17 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002419 231.0
DYD3_k127_6953622_18 OsmC-like protein K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000002058 224.0
DYD3_k127_6953622_19 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000001615 216.0
DYD3_k127_6953622_2 SMART Tetratricopeptide domain protein - - - 7.334e-204 666.0
DYD3_k127_6953622_20 PFAM ApaG domain protein K06195 - - 0.000000000000000000000000000000000000000000000000000000003809 201.0
DYD3_k127_6953622_21 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000001058 206.0
DYD3_k127_6953622_22 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000000009351 165.0
DYD3_k127_6953622_23 Glycosyltransferase like family 2 K07011,K20444 - - 0.0000000000000000000000000000009607 136.0
DYD3_k127_6953622_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009434 538.0
DYD3_k127_6953622_4 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 488.0
DYD3_k127_6953622_5 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 479.0
DYD3_k127_6953622_6 membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 477.0
DYD3_k127_6953622_7 PhoH-like phosphate starvation-inducible protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 463.0
DYD3_k127_6953622_8 Transporter associated domain K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 400.0
DYD3_k127_6953622_9 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 400.0
DYD3_k127_695982_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1457.0
DYD3_k127_695982_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 5.801e-311 967.0
DYD3_k127_695982_10 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 616.0
DYD3_k127_695982_11 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 623.0
DYD3_k127_695982_12 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 603.0
DYD3_k127_695982_13 synthetase, class II (G H P K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 600.0
DYD3_k127_695982_14 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 583.0
DYD3_k127_695982_15 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 532.0
DYD3_k127_695982_16 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 524.0
DYD3_k127_695982_17 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 518.0
DYD3_k127_695982_18 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 491.0
DYD3_k127_695982_19 PFAM Isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 481.0
DYD3_k127_695982_2 Belongs to the UbiD family K03182 - 4.1.1.98 4.346e-254 794.0
DYD3_k127_695982_20 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 478.0
DYD3_k127_695982_21 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 460.0
DYD3_k127_695982_22 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004114 467.0
DYD3_k127_695982_23 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 460.0
DYD3_k127_695982_24 TIGRFAM filamentous haemagglutinin family outer membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008156 473.0
DYD3_k127_695982_25 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 427.0
DYD3_k127_695982_26 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 422.0
DYD3_k127_695982_27 Hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 426.0
DYD3_k127_695982_28 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 409.0
DYD3_k127_695982_29 4Fe-4S ferredoxin, iron-sulfur binding K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 399.0
DYD3_k127_695982_3 ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component K02004 - - 5.47e-247 788.0
DYD3_k127_695982_30 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 396.0
DYD3_k127_695982_31 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 403.0
DYD3_k127_695982_32 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 388.0
DYD3_k127_695982_33 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 384.0
DYD3_k127_695982_34 UbiA prenyltransferase family K02548 - 2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 347.0
DYD3_k127_695982_35 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 331.0
DYD3_k127_695982_36 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008155 331.0
DYD3_k127_695982_37 COG3842 ABC-type spermidine putrescine transport systems, ATPase components K02010,K02017,K15497 - 3.6.3.29,3.6.3.30,3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 320.0
DYD3_k127_695982_38 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009161 304.0
DYD3_k127_695982_39 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 311.0
DYD3_k127_695982_4 Large family of predicted nucleotide-binding domains K07175 - - 1.061e-244 762.0
DYD3_k127_695982_40 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 304.0
DYD3_k127_695982_41 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 308.0
DYD3_k127_695982_42 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 301.0
DYD3_k127_695982_43 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 302.0
DYD3_k127_695982_44 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 304.0
DYD3_k127_695982_45 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003256 292.0
DYD3_k127_695982_46 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004043 279.0
DYD3_k127_695982_47 Dehydrogenase K00031,K00052,K07246 GO:0006082,GO:0006575,GO:0006732,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016053,GO:0019297,GO:0019298,GO:0019752,GO:0032787,GO:0042398,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 1.1.1.42,1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000003987 274.0
DYD3_k127_695982_48 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000005846 266.0
DYD3_k127_695982_49 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000003128 270.0
DYD3_k127_695982_5 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 GO:0003674,GO:0003824,GO:0004333,GO:0005488,GO:0005515,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016860,GO:0016862,GO:0016999,GO:0017144,GO:0019752,GO:0033554,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0047808,GO:0048037,GO:0050163,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 2.968e-244 762.0
DYD3_k127_695982_50 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000252 257.0
DYD3_k127_695982_51 PFAM MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001195 251.0
DYD3_k127_695982_52 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004342 254.0
DYD3_k127_695982_53 Sir2 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007516 250.0
DYD3_k127_695982_54 PFAM Alkyl hydroperoxide reductase K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000001326 241.0
DYD3_k127_695982_55 Alpha/beta hydrolase of unknown function (DUF1100) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001642 259.0
DYD3_k127_695982_56 Domain of unknown function (DUF1932) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001395 247.0
DYD3_k127_695982_57 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000002558 231.0
DYD3_k127_695982_58 Type IV pilus biogenesis stability protein PilW K02656 - - 0.0000000000000000000000000000000000000000000000000000000000000000004629 239.0
DYD3_k127_695982_59 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000001717 242.0
DYD3_k127_695982_6 4Fe-4S dicluster domain - - - 1.786e-230 733.0
DYD3_k127_695982_60 GDSL-like Lipase/Acylhydrolase K10804 GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016289,GO:0016290,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0047617,GO:0052689,GO:0071704,GO:0140096,GO:1901564 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000009047 229.0
DYD3_k127_695982_61 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000000000000005559 215.0
DYD3_k127_695982_62 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000001044 225.0
DYD3_k127_695982_63 Binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000003569 202.0
DYD3_k127_695982_64 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000005104 207.0
DYD3_k127_695982_65 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000000000000006697 199.0
DYD3_k127_695982_66 Alcohol dehydrogenase zinc-binding domain protein K13953,K18382 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000001249 199.0
DYD3_k127_695982_67 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000000000001841 181.0
DYD3_k127_695982_69 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000001194 160.0
DYD3_k127_695982_7 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 1.617e-227 709.0
DYD3_k127_695982_70 Transcriptional regulator K15539 - - 0.0000000000000000000000000000000000000007929 162.0
DYD3_k127_695982_71 Thioesterase - - - 0.000000000000000000000000000000000000006391 149.0
DYD3_k127_695982_72 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000001689 145.0
DYD3_k127_695982_73 Protein of unknown function (DUF3305) - - - 0.0000000000000000000000000000000005227 137.0
DYD3_k127_695982_74 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000000000009568 130.0
DYD3_k127_695982_75 cytoplasmic chaperone TorD family protein - - - 0.00000000000000000000000000000004524 133.0
DYD3_k127_695982_76 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.000000000000000001368 95.0
DYD3_k127_695982_77 protein conserved in bacteria K09937 - - 0.0000000000000000756 82.0
DYD3_k127_695982_78 - - - - 0.0000000000000003185 87.0
DYD3_k127_695982_79 Protein of unknown function (DUF3306) - - - 0.000000000000005452 82.0
DYD3_k127_695982_8 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 6.604e-218 691.0
DYD3_k127_695982_80 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.00000000000006282 71.0
DYD3_k127_695982_81 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.0000000000002061 82.0
DYD3_k127_695982_83 PFAM Resolvase, N-terminal - - - 0.00004269 48.0
DYD3_k127_695982_84 COG NOG19114 non supervised orthologous group - - - 0.0003512 47.0
DYD3_k127_695982_9 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 3.001e-199 631.0
DYD3_k127_6960178_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K03520 - 1.2.5.3 2.271e-212 683.0
DYD3_k127_6960178_1 Histidine phosphatase superfamily (branch 1) - - - 0.0000000000000000000000000000000000000000011 163.0
DYD3_k127_6960178_2 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 0.000000000000000000707 86.0
DYD3_k127_7038182_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1506.0
DYD3_k127_7038182_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 532.0
DYD3_k127_7038182_2 MOFRL family K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 528.0
DYD3_k127_7038182_3 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 512.0
DYD3_k127_7038182_4 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008251 291.0
DYD3_k127_7038182_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000004977 213.0
DYD3_k127_7038182_6 Flagellar Assembly Protein A K09749 - - 0.0000000000000000000000000000000000000000000000000001019 206.0
DYD3_k127_7038182_7 Putative regulatory protein - - - 0.0000000000000000000000000003894 116.0
DYD3_k127_7040452_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 4.217e-294 910.0
DYD3_k127_7040452_1 2-methylcitrate dehydratase K01720 - 4.2.1.79 9.786e-239 752.0
DYD3_k127_7040452_10 e1 component (alpha subunit) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 444.0
DYD3_k127_7040452_11 succinate dehydrogenase fumarate reductase K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006288 434.0
DYD3_k127_7040452_12 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 404.0
DYD3_k127_7040452_13 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 389.0
DYD3_k127_7040452_14 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 323.0
DYD3_k127_7040452_15 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000001831 144.0
DYD3_k127_7040452_16 Thioredoxin-like - - - 0.0000000000000000000000000000000002886 143.0
DYD3_k127_7040452_17 Succinate dehydrogenase, hydrophobic K00242 - - 0.000000000000000000000000000001062 127.0
DYD3_k127_7040452_18 An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH K00240,K09159 GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0016999,GO:0017013,GO:0017144,GO:0018065,GO:0018293,GO:0019538,GO:0019752,GO:0022607,GO:0034552,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0045333,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072350,GO:1901564 1.3.5.1,1.3.5.4 0.000000000000000003112 91.0
DYD3_k127_7040452_2 dehydrogenase, E1 component K00164 - 1.2.4.2 2.99e-234 737.0
DYD3_k127_7040452_3 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.514e-210 661.0
DYD3_k127_7040452_4 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) - - - 1.664e-196 619.0
DYD3_k127_7040452_5 Belongs to the citrate synthase family K01659 - 2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 606.0
DYD3_k127_7040452_6 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 520.0
DYD3_k127_7040452_7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 494.0
DYD3_k127_7040452_8 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 489.0
DYD3_k127_7040452_9 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 471.0
DYD3_k127_704222_0 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 358.0
DYD3_k127_704222_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 319.0
DYD3_k127_704222_2 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002533 249.0
DYD3_k127_704222_3 - - - - 0.0000003943 54.0
DYD3_k127_704222_4 17 kDa surface antigen - - - 0.0001857 51.0
DYD3_k127_704222_5 - - - - 0.0006339 46.0
DYD3_k127_7063898_0 Alpha amylase, catalytic domain - - - 1.351e-318 1001.0
DYD3_k127_7063898_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 4.846e-231 741.0
DYD3_k127_7063898_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 7.188e-219 699.0
DYD3_k127_7063898_3 Belongs to the PdxS SNZ family K06215 - 4.3.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 450.0
DYD3_k127_7063898_4 Belongs to the UPF0255 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 306.0
DYD3_k127_7063898_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003817 245.0
DYD3_k127_7063898_6 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000000002496 217.0
DYD3_k127_7063898_7 thiolester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000009608 228.0
DYD3_k127_7063898_8 Phospholipid N-methyltransferase - - - 0.00000000000000000000000000000000000000000000000001849 189.0
DYD3_k127_7075139_0 copper-translocating P-type ATPase K17686 - 3.6.3.54 3.204e-281 887.0
DYD3_k127_7075139_1 SAF - - - 6.204e-207 655.0
DYD3_k127_7075139_10 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 298.0
DYD3_k127_7075139_11 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 289.0
DYD3_k127_7075139_12 transcriptional regulator, ArsR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002796 276.0
DYD3_k127_7075139_13 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000005273 254.0
DYD3_k127_7075139_14 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000003367 241.0
DYD3_k127_7075139_15 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000000000000000000000000000000000000000000000000000000000000000003928 235.0
DYD3_k127_7075139_16 protocatechuate 3,4-dioxygenase activity K03381 - 1.13.11.1 0.0000000000000000000000000000000000000000000000000000000000000004866 225.0
DYD3_k127_7075139_17 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000001114 203.0
DYD3_k127_7075139_18 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000001409 207.0
DYD3_k127_7075139_19 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000007411 181.0
DYD3_k127_7075139_2 Chromate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 509.0
DYD3_k127_7075139_20 - - - - 0.00000000000000000000000000000000000000000000009285 172.0
DYD3_k127_7075139_21 Protein of unknown function, DUF - - - 0.000000000000000000000000000000000000000000002543 166.0
DYD3_k127_7075139_22 - - - - 0.0000000000000000000000000000000000000001718 154.0
DYD3_k127_7075139_23 - - - - 0.000000000000000000000000000000000000001938 166.0
DYD3_k127_7075139_24 Transcriptional regulator - - - 0.0000000000000000000000000000000005046 139.0
DYD3_k127_7075139_25 - - - - 0.000000000000000000000000000000002791 132.0
DYD3_k127_7075139_26 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000003545 127.0
DYD3_k127_7075139_27 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000004397 131.0
DYD3_k127_7075139_28 LTXXQ motif family protein - - - 0.00000000000000000000000000000848 129.0
DYD3_k127_7075139_29 - - - - 0.00000000000000000000000000003198 125.0
DYD3_k127_7075139_3 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 500.0
DYD3_k127_7075139_30 - - - - 0.0000000000000000000000004279 113.0
DYD3_k127_7075139_31 Short C-terminal domain K08982 - - 0.00000000000000004446 91.0
DYD3_k127_7075139_32 Protein of unknown function (DUF2933) - - - 0.00000000000001927 82.0
DYD3_k127_7075139_33 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000135 62.0
DYD3_k127_7075139_34 Copper binding periplasmic protein CusF K07810 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0006873,GO:0006875,GO:0006878,GO:0006950,GO:0008150,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010272,GO:0010273,GO:0016530,GO:0016531,GO:0019725,GO:0030003,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042592,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046688,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0061687,GO:0065007,GO:0065008,GO:0097501,GO:0098754,GO:0098771,GO:0140104,GO:1990169 - 0.0000005213 61.0
DYD3_k127_7075139_35 Copper binding periplasmic protein CusF K07810 - - 0.0000008943 55.0
DYD3_k127_7075139_4 Methyl-transferase K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 474.0
DYD3_k127_7075139_5 PFAM multicopper oxidase type K04753,K08100,K14588 - 1.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 444.0
DYD3_k127_7075139_6 PFAM multicopper oxidase type K04753,K08100,K14588 - 1.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 433.0
DYD3_k127_7075139_7 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 426.0
DYD3_k127_7075139_8 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 334.0
DYD3_k127_7075139_9 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 325.0
DYD3_k127_708275_0 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit - - - 4.333e-246 767.0
DYD3_k127_708275_1 Catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway K12960 - 3.5.4.28,3.5.4.31 4.885e-223 700.0
DYD3_k127_708275_10 Coenzyme A transferase K01039 - 2.8.3.12 0.0004827 44.0
DYD3_k127_708275_2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 9.149e-221 692.0
DYD3_k127_708275_3 Receptor family ligand binding region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 565.0
DYD3_k127_708275_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 482.0
DYD3_k127_708275_5 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 447.0
DYD3_k127_708275_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 430.0
DYD3_k127_708275_7 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 378.0
DYD3_k127_708275_8 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 317.0
DYD3_k127_708275_9 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000002901 198.0
DYD3_k127_7086409_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1213.0
DYD3_k127_7086409_1 oxidase, subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 584.0
DYD3_k127_7086409_2 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 356.0
DYD3_k127_7086409_3 - - - - 0.000000000000000000000000000004183 126.0
DYD3_k127_7143044_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 4.061e-249 787.0
DYD3_k127_7143044_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 571.0
DYD3_k127_7143044_10 Prokaryotic N-terminal methylation motif - - - 0.000000000005943 71.0
DYD3_k127_7143044_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 422.0
DYD3_k127_7143044_3 Branched-chain amino acid ATP-binding cassette transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 386.0
DYD3_k127_7143044_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 355.0
DYD3_k127_7143044_5 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.000000000000000000000000000000000000000000000000000000000000000000006222 237.0
DYD3_k127_7143044_6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000000000000003233 201.0
DYD3_k127_7143044_7 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000000000000000000000000000000000000000000000000005651 194.0
DYD3_k127_7143044_8 protein conserved in bacteria K11719 - - 0.0000000000000000000000000000000000000000000249 171.0
DYD3_k127_7143044_9 sigma 54 modulation protein ribosomal protein S30EA K05808 - - 0.00000000000000000000000000000000000001298 146.0
DYD3_k127_7512_0 type II secretion system protein E K02454,K02652,K12276 - - 1.091e-237 749.0
DYD3_k127_7512_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000057 367.0
DYD3_k127_7512_2 PFAM type II secretion system K12278 - - 0.00000000000000000000000000000000000000000000000000000000000000001321 230.0
DYD3_k127_7512_3 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000000000000000000000000000000000002203 177.0
DYD3_k127_7512_4 Bacterial SH3 domain - - - 0.0000000000000000000000000000000000000000859 162.0
DYD3_k127_7512_5 Rhodanese Homology Domain - - - 0.000000000000000000000000000000008063 132.0
DYD3_k127_7512_6 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000005793 117.0
DYD3_k127_944689_0 Tripartite tricarboxylate transporter TctA family K07793 - - 3.667e-213 673.0
DYD3_k127_944689_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 552.0
DYD3_k127_944689_10 Tripartite tricarboxylate transporter TctB family K07794 - - 0.0000000000000000000000000000001678 130.0
DYD3_k127_944689_11 Protein of unknown function (DUF3301) - - - 0.000000000000000000000008043 106.0
DYD3_k127_944689_12 COGs COG1196 Chromosome segregation ATPase - - - 0.0000000000000001651 91.0
DYD3_k127_944689_13 DNA-damage-repair toleration protein DRT102 - GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.00003033 53.0
DYD3_k127_944689_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 490.0
DYD3_k127_944689_3 Isochorismatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 353.0
DYD3_k127_944689_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005223 336.0
DYD3_k127_944689_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006135 292.0
DYD3_k127_944689_6 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000007215 246.0
DYD3_k127_944689_7 Cupin - - - 0.00000000000000000000000000000000000000000000000001103 193.0
DYD3_k127_944689_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000002035 143.0
DYD3_k127_944689_9 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.00000000000000000000000000000007937 131.0
DYD3_k127_958825_0 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 401.0
DYD3_k127_958825_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003704 273.0
DYD3_k127_958825_2 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003321 260.0
DYD3_k127_958825_3 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000002394 177.0
DYD3_k127_958825_4 protein conserved in bacteria K09790 - - 0.000000000000000000000000000000000002585 142.0
DYD3_k127_958825_5 TRAP transporter, solute receptor (TAXI family K07080 - - 0.0000000000000000000000000000000009578 143.0
DYD3_k127_971891_0 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 364.0
DYD3_k127_971891_1 PFAM amidohydrolase 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 342.0
DYD3_k127_971891_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005069 340.0
DYD3_k127_971891_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000606 314.0
DYD3_k127_971891_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000003927 142.0
DYD3_k127_971891_5 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000002785 138.0