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Overview

ID MAG00980
Name DYD3_bin.58
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family GWC2-71-9
Genus SZUA-320
Species
Assembly information
Completeness (%) 62.54
Contamination (%) 1.1
GC content (%) 63.0
N50 (bp) 4,740
Genome size (bp) 2,313,741

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2212

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1004439_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000066 250.0
DYD3_k127_1004439_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000001111 216.0
DYD3_k127_1004439_2 ATP synthesis coupled proton transport K02109 - - 0.00000000000001501 83.0
DYD3_k127_1004439_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000004234 68.0
DYD3_k127_1004439_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000003503 66.0
DYD3_k127_1004439_5 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.0001746 48.0
DYD3_k127_1008477_0 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 599.0
DYD3_k127_1008477_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000006733 208.0
DYD3_k127_1008477_2 Domain of unknown function (DUF4139) - - - 0.0000000000000000001736 94.0
DYD3_k127_1008477_3 Electron transfer flavoprotein K03521 - - 0.00000000004805 64.0
DYD3_k127_1039178_0 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 480.0
DYD3_k127_1039178_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 424.0
DYD3_k127_1039178_2 Phosphate transporter family K03306 - - 0.00000000000000000000000000000005805 126.0
DYD3_k127_1097042_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006787 362.0
DYD3_k127_1097042_1 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 319.0
DYD3_k127_1097042_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003337 262.0
DYD3_k127_1097042_3 - - - - 0.0000000000000004667 81.0
DYD3_k127_112228_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 495.0
DYD3_k127_112228_1 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000001987 115.0
DYD3_k127_1141990_0 sequence-specific DNA binding - - - 0.00000000000000000000000000000001034 133.0
DYD3_k127_1141990_1 HEPN domain - - - 0.00000000001362 70.0
DYD3_k127_1141990_2 Fic/DOC family - - - 0.00000001135 62.0
DYD3_k127_1141990_3 Cupin - - - 0.0006574 46.0
DYD3_k127_1153736_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 516.0
DYD3_k127_1153736_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000001048 220.0
DYD3_k127_1153736_2 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000009785 204.0
DYD3_k127_1154499_0 Dehydrogenase K00248,K09478 - 1.3.8.1,1.3.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 525.0
DYD3_k127_1154499_1 gluconolactonase activity - - - 0.000000000000000000000000000000000000000000005981 174.0
DYD3_k127_1154499_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000000002652 79.0
DYD3_k127_1154499_3 Subtilase family K17734 - - 0.0000000002549 66.0
DYD3_k127_1157399_0 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007372 588.0
DYD3_k127_1157399_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 560.0
DYD3_k127_1157399_2 Peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000000000000000000000000000000000000004031 187.0
DYD3_k127_1157399_3 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000002008 124.0
DYD3_k127_1165142_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 561.0
DYD3_k127_1165142_1 SERine Proteinase INhibitors K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000104 293.0
DYD3_k127_1165142_2 Paraquat-inducible protein A - - - 0.000000000000000000000000000000000000000000000000000009968 193.0
DYD3_k127_1165142_3 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000003843 182.0
DYD3_k127_1165142_4 MgtC family K07507 - - 0.0000000000000000000000000000000003592 136.0
DYD3_k127_1165142_5 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000002747 137.0
DYD3_k127_1165142_6 - - - - 0.000000000000000000006433 93.0
DYD3_k127_1165142_7 metal cluster binding K19302 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.1.27 0.0000000000000001073 85.0
DYD3_k127_1165142_9 TonB-dependent receptor - - - 0.000002674 58.0
DYD3_k127_118486_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000003304 226.0
DYD3_k127_118486_1 Protein of unknown function (DUF3303) - - - 0.0000000000000000000000000000000005336 130.0
DYD3_k127_120033_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 4.438e-234 738.0
DYD3_k127_120033_1 PFAM Phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 505.0
DYD3_k127_120033_2 adenylylsulfate kinase activity K00860,K00955 GO:0003674,GO:0003824,GO:0004020,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 328.0
DYD3_k127_120033_3 Integrase core domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000001266 238.0
DYD3_k127_120033_4 HMMPfam hit to PF00665, Integrase core domain, score 4.5e-41 K07497 - - 0.0000000000000000000000000000000423 126.0
DYD3_k127_120033_5 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000001285 113.0
DYD3_k127_1208396_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004526 279.0
DYD3_k127_1208396_1 UPF0182 protein K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000003208 73.0
DYD3_k127_1214531_0 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 353.0
DYD3_k127_1214531_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002118 265.0
DYD3_k127_1214531_2 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000002213 183.0
DYD3_k127_121829_0 Carboxypeptidase regulatory-like domain - - - 1.5e-323 1022.0
DYD3_k127_121829_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007761 442.0
DYD3_k127_121829_2 ABC-type multidrug transport system, ATPase and permease K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000201 284.0
DYD3_k127_121829_3 PQQ-like domain K14028 - 1.1.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000003332 251.0
DYD3_k127_121829_4 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000001798 156.0
DYD3_k127_121829_5 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000002334 126.0
DYD3_k127_121829_6 Rdx family K07401 - - 0.0000003269 53.0
DYD3_k127_121829_7 Domain of unknown function (DUF1854) - - - 0.000002842 56.0
DYD3_k127_1221293_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001481 286.0
DYD3_k127_1221293_1 binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000004912 144.0
DYD3_k127_1221293_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000667 133.0
DYD3_k127_1221293_3 - - - - 0.0001088 53.0
DYD3_k127_1226447_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.258e-234 733.0
DYD3_k127_1226447_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 331.0
DYD3_k127_1226447_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 321.0
DYD3_k127_1226447_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000003025 238.0
DYD3_k127_1226447_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000005004 92.0
DYD3_k127_1226447_5 - - - - 0.0003266 51.0
DYD3_k127_1231623_0 dehydrogenase, E1 component K11381 - 1.2.4.4 1.989e-300 938.0
DYD3_k127_1231623_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009586 364.0
DYD3_k127_1231623_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 354.0
DYD3_k127_1231623_3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000001628 188.0
DYD3_k127_1231623_4 phenylacetic acid degradation protein K02614 - - 0.000000000000000000000000000000000000000006369 158.0
DYD3_k127_1235293_0 Copper amine oxidase, N2 domain K00276 - 1.4.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 472.0
DYD3_k127_1235293_1 PFAM Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000000000007927 156.0
DYD3_k127_1235293_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000000005074 148.0
DYD3_k127_1235293_3 Copper amine oxidase, N2 domain K00276 - 1.4.3.21 0.00000000000000000001784 95.0
DYD3_k127_1240832_0 Peptidase family M28 K13049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007823 478.0
DYD3_k127_1240832_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000002086 150.0
DYD3_k127_1244850_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 2.509e-224 715.0
DYD3_k127_1244850_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 401.0
DYD3_k127_1244850_2 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000003763 69.0
DYD3_k127_1258819_0 Acetyl-coenzyme A synthetase N-terminus K01908 - 6.2.1.17 2.941e-287 902.0
DYD3_k127_1258819_1 - - - - 5.79e-237 744.0
DYD3_k127_1258819_2 Peptidase, M16 K07263 - - 0.00000000000000000000000000000000000000004675 173.0
DYD3_k127_1258819_3 ABC transporter K02017,K02018 - 3.6.3.29 0.0001658 50.0
DYD3_k127_1264504_0 Peptidase dimerisation domain K01439,K13049 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 458.0
DYD3_k127_1264504_2 Putative cyclase - - - 0.000000000002199 67.0
DYD3_k127_1267573_0 Glycosyl hydrolase family 3 N terminal domain K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000004766 271.0
DYD3_k127_1267573_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003862 253.0
DYD3_k127_1267573_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000009467 180.0
DYD3_k127_1298962_1 ATPases associated with a variety of cellular activities K15555 - - 0.00000000000000000000000000000000000001817 149.0
DYD3_k127_1298962_2 - - - - 0.00005907 49.0
DYD3_k127_1311043_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 566.0
DYD3_k127_1311043_1 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 371.0
DYD3_k127_1311043_2 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 345.0
DYD3_k127_1311043_4 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000000000000000009262 107.0
DYD3_k127_1325714_0 PFAM Integrase catalytic region - - - 0.000000000000000000000000004716 118.0
DYD3_k127_1325714_1 COG2826 Transposase and inactivated derivatives, IS30 family - - - 0.00000000000003877 74.0
DYD3_k127_1325714_2 - - - - 0.0000000000000497 85.0
DYD3_k127_1325714_3 Integrase core domain - - - 0.0000000000007567 74.0
DYD3_k127_1325714_4 - - - - 0.0000004079 62.0
DYD3_k127_1329589_0 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 551.0
DYD3_k127_1329589_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000118 243.0
DYD3_k127_1329589_2 - - - - 0.0000000000000000000000000000000000000000000000009068 184.0
DYD3_k127_1329589_3 - - - - 0.00000000000000000000000000000000000004847 153.0
DYD3_k127_1329589_4 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000006088 142.0
DYD3_k127_1329589_5 domain protein - - - 0.00000000000008405 79.0
DYD3_k127_1351507_0 Sugar nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002722 259.0
DYD3_k127_1351507_1 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000008775 196.0
DYD3_k127_1351507_2 PFAM beta-lactamase domain protein - - - 0.000000000000000000008781 103.0
DYD3_k127_1352332_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 324.0
DYD3_k127_1365866_0 Sulfate permease family K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 585.0
DYD3_k127_1365866_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 420.0
DYD3_k127_1365866_10 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000000000000000000000000003889 159.0
DYD3_k127_1365866_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 417.0
DYD3_k127_1365866_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 364.0
DYD3_k127_1365866_4 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 357.0
DYD3_k127_1365866_5 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005431 367.0
DYD3_k127_1365866_6 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 319.0
DYD3_k127_1365866_7 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007854 247.0
DYD3_k127_1365866_8 Zinc carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001249 249.0
DYD3_k127_1365866_9 DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000005582 243.0
DYD3_k127_1393626_0 Peptidase inhibitor I9 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 466.0
DYD3_k127_1393626_1 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000002391 219.0
DYD3_k127_1393626_2 domain protein - - - 0.0000000000000000000000000000001191 137.0
DYD3_k127_1399538_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1211.0
DYD3_k127_1399538_1 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000688 349.0
DYD3_k127_1399538_2 ArgK protein K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004023 251.0
DYD3_k127_1399538_3 PFAM CBS domain - - - 0.000001727 54.0
DYD3_k127_1399921_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 486.0
DYD3_k127_1399921_1 secondary active sulfate transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001592 272.0
DYD3_k127_1406340_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 316.0
DYD3_k127_1406340_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006014 258.0
DYD3_k127_1406340_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00003657 46.0
DYD3_k127_1409353_0 Cold shock protein K03704 - - 0.00000000000000000000000000003435 117.0
DYD3_k127_1409353_1 curli production assembly transport component CsgG K04087 - - 0.000000000005311 74.0
DYD3_k127_1409353_2 - - - - 0.00000000001585 76.0
DYD3_k127_1410153_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 484.0
DYD3_k127_1431681_0 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002774 425.0
DYD3_k127_1431681_1 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 334.0
DYD3_k127_1431681_2 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 0.00000000000000000000000000000000000000000000000000000001631 214.0
DYD3_k127_1433283_0 COG0433 Predicted ATPase K06915 - - 1.526e-250 790.0
DYD3_k127_1433283_1 AAA domain K03546 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 522.0
DYD3_k127_1433283_10 - - - - 0.00000000002488 66.0
DYD3_k127_1433283_2 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006519 351.0
DYD3_k127_1433283_3 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 297.0
DYD3_k127_1433283_4 GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001797 276.0
DYD3_k127_1433283_5 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005329 283.0
DYD3_k127_1433283_6 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000001201 220.0
DYD3_k127_1433283_7 COGs COG2380 conserved - - - 0.0000000000000000000000000000000000002523 152.0
DYD3_k127_1433283_8 DbpA RNA binding domain K05592 - 3.6.4.13 0.00000000000000000000009885 113.0
DYD3_k127_1485703_0 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 338.0
DYD3_k127_1485703_1 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 320.0
DYD3_k127_1485703_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001842 262.0
DYD3_k127_1485703_3 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000123 229.0
DYD3_k127_1485703_4 TIGRFAM argininosuccinate lyase K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000001469 213.0
DYD3_k127_1485703_5 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000001171 108.0
DYD3_k127_1514879_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 7.6e-232 727.0
DYD3_k127_1514879_1 neurotransmitter:sodium symporter activity K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 540.0
DYD3_k127_1514879_2 - - - - 0.000000000002387 76.0
DYD3_k127_1532267_0 Prolyl oligopeptidase family K01303 - 3.4.19.1 2.639e-255 804.0
DYD3_k127_1532267_1 Bacterial protein of unknown function (DUF885) - - - 9.905e-248 775.0
DYD3_k127_1532267_2 tRNA synthetases class I (E and Q), catalytic domain K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008559 282.0
DYD3_k127_1532267_3 Cytidine monophosphokinase K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000001691 259.0
DYD3_k127_1532267_4 Tetratricopeptide repeat K08309 - - 0.0000000000000000000000000000000000000000000000000000008075 212.0
DYD3_k127_1532267_5 Bacterial transcriptional activator domain - - - 0.00000000000000001332 88.0
DYD3_k127_1532267_6 WD40-like Beta Propeller Repeat - - - 0.000000001384 71.0
DYD3_k127_1532267_7 amine dehydrogenase activity - - - 0.000001241 61.0
DYD3_k127_15510_0 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 433.0
DYD3_k127_15510_1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003209 240.0
DYD3_k127_15510_2 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000002416 193.0
DYD3_k127_15510_3 transglutaminase - - - 0.000000000000000000000000000000000005672 142.0
DYD3_k127_15510_4 membrane protein (DUF2078) K08982 - - 0.0000001103 57.0
DYD3_k127_15510_5 - - - - 0.000003198 55.0
DYD3_k127_15510_6 Bacterial low temperature requirement A protein (LtrA) - - - 0.000005493 53.0
DYD3_k127_15510_7 Short C-terminal domain - - - 0.00003493 50.0
DYD3_k127_1567108_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 3.012e-240 758.0
DYD3_k127_1567108_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 325.0
DYD3_k127_1567108_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000004081 194.0
DYD3_k127_1567108_3 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000253 148.0
DYD3_k127_1572578_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 1.911e-229 724.0
DYD3_k127_1572578_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 589.0
DYD3_k127_1572578_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 403.0
DYD3_k127_1572578_3 tungstate binding K15495 - - 0.0000000000000000000000000000000000000000000000002494 183.0
DYD3_k127_1572578_4 Transport of potassium into the cell K03549 - - 0.0000000000000000000000000000000000000000000000002531 188.0
DYD3_k127_1572578_5 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000003637 185.0
DYD3_k127_1572578_6 Vitamin K epoxide reductase family - - - 0.000000000000000000000000001056 119.0
DYD3_k127_1572578_7 OsmC-like protein K07397 - - 0.00000000000000000000000006087 113.0
DYD3_k127_1572578_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000004626 106.0
DYD3_k127_1572578_9 - - - - 0.0000000000000004667 81.0
DYD3_k127_1573890_0 Arginase family K01476 - 3.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 392.0
DYD3_k127_1573890_1 cAMP biosynthetic process K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000003973 248.0
DYD3_k127_1573890_2 response to abiotic stimulus - - - 0.000000000000000000000000009413 117.0
DYD3_k127_1574650_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 572.0
DYD3_k127_1574650_1 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 503.0
DYD3_k127_1574650_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 442.0
DYD3_k127_1574650_3 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 304.0
DYD3_k127_1574650_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000001682 184.0
DYD3_k127_1574650_5 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000007667 169.0
DYD3_k127_1585317_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.384e-313 975.0
DYD3_k127_1585317_1 Peptidase dimerisation domain K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 526.0
DYD3_k127_1585317_10 IMP dehydrogenase activity K07182 - - 0.0000000101 65.0
DYD3_k127_1585317_2 Amidohydrolase family K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 516.0
DYD3_k127_1585317_3 Heparinase II/III-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 428.0
DYD3_k127_1585317_4 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 341.0
DYD3_k127_1585317_5 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 325.0
DYD3_k127_1585317_6 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000008704 222.0
DYD3_k127_1585317_7 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000001092 199.0
DYD3_k127_1585317_8 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000202 134.0
DYD3_k127_1585317_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000004215 63.0
DYD3_k127_1587426_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002016 273.0
DYD3_k127_1587426_1 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000004399 188.0
DYD3_k127_1587426_2 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.14 0.000000000000000000000000000005648 120.0
DYD3_k127_1587426_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000001344 94.0
DYD3_k127_1587426_4 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000004765 78.0
DYD3_k127_1589425_0 Prephenate dehydrogenase chorismate mutase K00210 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000005359 221.0
DYD3_k127_1589425_1 pathogenesis - - - 0.00000000000000000000001066 109.0
DYD3_k127_1589425_2 - - - - 0.000001756 53.0
DYD3_k127_1614922_0 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004091 446.0
DYD3_k127_1614922_1 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005334 250.0
DYD3_k127_1614922_2 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000001193 199.0
DYD3_k127_1614922_3 Phospholipase_D-nuclease N-terminal - - - 0.000000000000000000000000000000000001504 141.0
DYD3_k127_1627889_0 with chaperone activity ATP-binding K03696 - - 2.103e-301 944.0
DYD3_k127_1627889_1 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 421.0
DYD3_k127_1627889_2 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000003578 158.0
DYD3_k127_1627889_3 PFAM UvrB UvrC protein K19411 - - 0.0000000000000000000000000000000006293 136.0
DYD3_k127_1628780_0 COG1506 Dipeptidyl aminopeptidases acylaminoacyl-peptidases - - - 1.753e-221 718.0
DYD3_k127_1628780_1 M61 glycyl aminopeptidase - - - 4.535e-195 635.0
DYD3_k127_1628780_2 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 441.0
DYD3_k127_1628780_3 Pantothenic acid kinase K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 397.0
DYD3_k127_1628780_4 Threonine dehydratase K17989 - 4.3.1.17,4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 352.0
DYD3_k127_1628780_5 Saccharopine dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003674 238.0
DYD3_k127_1628780_6 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000009089 191.0
DYD3_k127_1628780_7 COGs COG0491 Zn-dependent hydrolase including glyoxylase - - - 0.0000000000000000000000000000000000000001718 154.0
DYD3_k127_1628780_8 - - - - 0.00000000000000001431 88.0
DYD3_k127_1628780_9 - K01822 - 5.3.3.1 0.00001359 54.0
DYD3_k127_1634153_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 318.0
DYD3_k127_1634153_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 312.0
DYD3_k127_1634153_2 Peptidase family M50 K06402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 290.0
DYD3_k127_1634153_3 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003289 280.0
DYD3_k127_1634153_4 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.000000000000004619 87.0
DYD3_k127_1639173_0 Nitrile hydratase, alpha chain K01721 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 374.0
DYD3_k127_1639173_1 Belongs to the arginase family K01476 - 3.5.3.1 0.000000000000009918 79.0
DYD3_k127_1639173_2 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.00008235 46.0
DYD3_k127_165011_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1114.0
DYD3_k127_165011_1 AcrB/AcrD/AcrF family K03296 - - 4.987e-299 951.0
DYD3_k127_165011_2 diguanylate cyclase K02488 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 393.0
DYD3_k127_165011_3 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 334.0
DYD3_k127_165011_4 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000004918 259.0
DYD3_k127_165011_5 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000005609 261.0
DYD3_k127_165011_6 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000008797 113.0
DYD3_k127_1694475_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005894 425.0
DYD3_k127_1694475_1 PFAM aminotransferase class V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002398 262.0
DYD3_k127_1694475_2 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281 - 3.5.1.19 0.0000000000000000000000000000006335 134.0
DYD3_k127_1715912_0 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.264e-212 682.0
DYD3_k127_1715912_1 2-oxoglutarate dehydrogenase C-terminal K00164,K01616 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006103,GO:0008150,GO:0008152,GO:0008683,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016740,GO:0016744,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0030312,GO:0032991,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0045333,GO:0046872,GO:0050439,GO:0051186,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:1902494,GO:1990204,GO:1990234 1.2.4.2,4.1.1.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 625.0
DYD3_k127_1715912_2 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 517.0
DYD3_k127_1715912_3 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 429.0
DYD3_k127_1715912_4 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000003997 238.0
DYD3_k127_1715912_5 SAM-dependent methyltransferases - - - 0.00000000000000000038 96.0
DYD3_k127_1724687_0 Glycosyl transferase family 2 K12984 - - 0.0000000000000000000000000000000000000000000000000003392 194.0
DYD3_k127_1724687_1 Glycosyl transferase family 2 K08301 - - 0.000000000000000000000000000000000000000000000006141 181.0
DYD3_k127_1724687_2 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000005826 179.0
DYD3_k127_1731594_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006249 409.0
DYD3_k127_1731594_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008616 396.0
DYD3_k127_1731594_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 306.0
DYD3_k127_1731594_3 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000005143 238.0
DYD3_k127_1731594_4 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000576 188.0
DYD3_k127_1733580_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 6.861e-207 655.0
DYD3_k127_1733580_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 2.458e-206 650.0
DYD3_k127_1733580_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 403.0
DYD3_k127_1733580_3 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002107 252.0
DYD3_k127_1740939_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000002825 231.0
DYD3_k127_1740939_1 Roadblock/LC7 domain - - - 0.00000000000000000000000000000000000000000001438 168.0
DYD3_k127_1740939_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000001323 80.0
DYD3_k127_175679_0 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008609 347.0
DYD3_k127_175679_1 Histidine Phosphotransfer domain K05962 - 2.7.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008147 302.0
DYD3_k127_175679_2 negative regulation of transcription, DNA-templated - GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006974,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000007565 140.0
DYD3_k127_175679_3 domain protein - - - 0.000000000000000001261 92.0
DYD3_k127_1769226_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000005324 217.0
DYD3_k127_1769226_1 Cytochrome c554 and c-prime K03620 - - 0.000000000000000000000000000000000000000000000000000051 198.0
DYD3_k127_1857098_0 SMART serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 429.0
DYD3_k127_1857098_1 Prokaryotic glutathione synthetase, ATP-grasp domain - - - 0.00000000001412 66.0
DYD3_k127_1928802_0 UPF0182 protein - - - 0.00000000000000000000000000000000000000000000000000000000000003014 237.0
DYD3_k127_1928802_1 Protein of unknown function (DUF1800) - - - 0.00000000000000000000007418 107.0
DYD3_k127_1934464_0 Domain of unknown function (DUF5117) - - - 2.102e-280 884.0
DYD3_k127_1934464_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 392.0
DYD3_k127_1934464_2 D-aminopeptidase K16203 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 306.0
DYD3_k127_1934464_3 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009706 297.0
DYD3_k127_1934464_4 Ferric reductase like transmembrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000004076 235.0
DYD3_k127_1934464_5 - - - - 0.00000000000000000000000000000000000000000000000000000002865 202.0
DYD3_k127_1934464_6 Sigma-70, region 4 K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000000000000000367 176.0
DYD3_k127_1934464_7 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000008337 130.0
DYD3_k127_1934464_8 Endoribonuclease L-PSP - - - 0.000000000000000000000001248 105.0
DYD3_k127_1934464_9 Alpha-2-Macroglobulin K06894 - - 0.00002496 49.0
DYD3_k127_1935440_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 597.0
DYD3_k127_1935440_1 Domain of unknown function (DUF4382) - - - 0.00000000000000000000000000007346 127.0
DYD3_k127_1935440_2 - - - - 0.000000000000000000000000007782 119.0
DYD3_k127_1935440_3 WD40-like Beta Propeller K03641 - - 0.000000000000000008268 99.0
DYD3_k127_1935440_4 Methyl-accepting chemotaxis protein signaling domain protein K03406 - - 0.00000000000001971 85.0
DYD3_k127_1935440_5 multi-organism process K03195 - - 0.000000007189 66.0
DYD3_k127_1935440_6 Rhodanese Homology Domain - - - 0.000007653 50.0
DYD3_k127_1963041_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 333.0
DYD3_k127_1963041_1 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008721 265.0
DYD3_k127_1963041_2 - - - - 0.00000000000000000000000000000000000000000000000000000000001406 224.0
DYD3_k127_197439_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 475.0
DYD3_k127_197439_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 335.0
DYD3_k127_197439_2 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003497 248.0
DYD3_k127_197439_3 Transglycosylase SLT domain K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000001299 236.0
DYD3_k127_197439_4 - - - - 0.000000000000000005966 95.0
DYD3_k127_1975119_0 Protein export membrane protein - - - 0.0 1438.0
DYD3_k127_1975119_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000004314 235.0
DYD3_k127_1982327_0 Belongs to the UPF0061 (SELO) family K08997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008512 541.0
DYD3_k127_1982327_1 - - - - 0.000001136 59.0
DYD3_k127_1987688_0 Ion transport 2 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 452.0
DYD3_k127_1987688_1 AMP binding K03322,K07076,K09944,K16263 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0008150,GO:0009268,GO:0009628,GO:0010035,GO:0010038,GO:0016020,GO:0042221,GO:0044464,GO:0046688,GO:0050896,GO:0071944,GO:0097501,GO:1990169 - 0.000000000000000000000000000000000000000000000000000000000000000000000004941 256.0
DYD3_k127_1987688_2 Protein of unknown function (DUF3568) - - - 0.00000000001807 69.0
DYD3_k127_1990582_0 Glycoside hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 423.0
DYD3_k127_1993528_0 Heparinase II/III N-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001416 274.0
DYD3_k127_1993528_1 transferase activity, transferring glycosyl groups K01912 - 6.2.1.30 0.00000000000000000000009116 101.0
DYD3_k127_1995559_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001692 262.0
DYD3_k127_1995559_1 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000002377 218.0
DYD3_k127_1995559_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000002284 205.0
DYD3_k127_1995559_3 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000001258 144.0
DYD3_k127_1995559_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000003091 141.0
DYD3_k127_1995559_5 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0008150,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000001411 124.0
DYD3_k127_1995559_6 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000003807 107.0
DYD3_k127_1995559_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000002686 99.0
DYD3_k127_1995559_8 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000003651 93.0
DYD3_k127_1995559_9 Ribosomal L29 protein K02904 - - 0.00000000002129 67.0
DYD3_k127_1996984_0 Bacterial regulatory proteins, tetR family - - - 0.00000000000002263 81.0
DYD3_k127_1996984_1 cellular amide catabolic process K13049 GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0006082,GO:0006520,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0010155,GO:0010941,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0022898,GO:0032409,GO:0032501,GO:0032879,GO:0034641,GO:0034762,GO:0034765,GO:0042592,GO:0043269,GO:0043436,GO:0043603,GO:0043604,GO:0043605,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044271,GO:0044281,GO:0044421,GO:0048519,GO:0048523,GO:0048871,GO:0050789,GO:0050794,GO:0051049,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0097009,GO:1901214,GO:1901215,GO:1901564,GO:1904062,GO:1990845,GO:2000275 - 0.0000004604 56.0
DYD3_k127_1996984_2 - - - - 0.00002156 51.0
DYD3_k127_201492_0 - - - - 0.000000000000000000000000000000000000000000000000000236 194.0
DYD3_k127_201492_1 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000000000000000000000008529 172.0
DYD3_k127_201492_2 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000008094 131.0
DYD3_k127_2018934_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001773 251.0
DYD3_k127_2018934_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000001729 155.0
DYD3_k127_2018934_3 Thioredoxin - - - 0.00000000000000000000000000000000008495 141.0
DYD3_k127_2027283_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 542.0
DYD3_k127_2027283_1 Belongs to the UPF0754 family - - - 0.00000001034 68.0
DYD3_k127_2029470_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000005843 254.0
DYD3_k127_2030593_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 3.756e-319 991.0
DYD3_k127_2030593_1 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000001043 207.0
DYD3_k127_2030789_0 Cytochrome C and Quinol oxidase polypeptide I - - - 8.369e-263 820.0
DYD3_k127_2030789_1 Cytochrome c oxidase subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005077 254.0
DYD3_k127_2030789_2 Cytochrome C oxidase subunit II, periplasmic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001939 230.0
DYD3_k127_2030789_3 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000001838 168.0
DYD3_k127_2030789_4 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000004453 155.0
DYD3_k127_2030789_5 Cytochrome c - - - 0.0000000000000000000000000000000000001914 152.0
DYD3_k127_2031081_0 B3/4 domain K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 404.0
DYD3_k127_2031081_1 Aminoacyl tRNA synthetase class II, N-terminal domain K01889 - 6.1.1.20 0.0000000000000000000000000000000004341 132.0
DYD3_k127_2040934_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006296 566.0
DYD3_k127_2040934_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 382.0
DYD3_k127_2040934_10 ATP-dependent protease La (LON) substrate-binding domain K01338 - 3.4.21.53 0.0000000000000000000000000000000000004161 148.0
DYD3_k127_2040934_11 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.00000000000000000000000000000000002862 148.0
DYD3_k127_2040934_12 Psort location Cytoplasmic, score K00945 - 2.7.4.25 0.000000000000000000000000000001841 129.0
DYD3_k127_2040934_2 4Fe-4S binding domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 368.0
DYD3_k127_2040934_3 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 354.0
DYD3_k127_2040934_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007237 293.0
DYD3_k127_2040934_5 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003824 271.0
DYD3_k127_2040934_6 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000001098 227.0
DYD3_k127_2040934_7 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000002836 189.0
DYD3_k127_2040934_8 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000366 209.0
DYD3_k127_2040934_9 FAD linked oxidases, C-terminal domain K11472 - - 0.000000000000000000000000000000000000000005701 170.0
DYD3_k127_2057500_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.457e-213 674.0
DYD3_k127_2057500_1 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 362.0
DYD3_k127_2057500_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 366.0
DYD3_k127_2057500_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000001291 75.0
DYD3_k127_2057500_4 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.0002688 44.0
DYD3_k127_2060599_0 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 377.0
DYD3_k127_2060599_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 371.0
DYD3_k127_2060599_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001065 279.0
DYD3_k127_2060599_3 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.0000000000000000000000000000000000000000000000001036 186.0
DYD3_k127_2060599_4 Protein of unknown function, DUF481 K07283 - - 0.0000000000000000000000000001997 129.0
DYD3_k127_2101111_0 Type II secretion system (T2SS), protein F K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 430.0
DYD3_k127_2101111_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 325.0
DYD3_k127_2101111_2 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000000000001578 115.0
DYD3_k127_2102770_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000001024 239.0
DYD3_k127_2102770_1 Zn peptidase - - - 0.000000000000000000000000000000000000000000000000000002475 210.0
DYD3_k127_2102770_2 RNA 2'-O ribose methyltransferase substrate binding K03437 - - 0.0000000000000000000000000000000000000000000000003572 185.0
DYD3_k127_2102770_3 Belongs to the UPF0754 family - - - 0.00008775 46.0
DYD3_k127_2122648_0 MatE - - - 4.257e-205 647.0
DYD3_k127_2122648_1 Multicopper oxidase K22348 - 1.16.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 385.0
DYD3_k127_2122648_2 Belongs to the DapB family K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000004041 270.0
DYD3_k127_213308_0 Domain of unknown function (DUF4956) - - - 0.0000000000000000000000000000000000000000000004791 176.0
DYD3_k127_213308_1 VTC domain - - - 0.000000000005925 70.0
DYD3_k127_2140954_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 340.0
DYD3_k127_2140954_1 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 340.0
DYD3_k127_2140954_2 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000012 276.0
DYD3_k127_2146173_0 PTS system sorbose subfamily IIB component K19507 - - 0.000000000000000000000000000000000000000000000001144 180.0
DYD3_k127_2146173_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000000000000000000000000004501 177.0
DYD3_k127_2146173_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000463 139.0
DYD3_k127_2146173_3 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.0000000000000000000000000000001602 134.0
DYD3_k127_2146173_4 PTS system sorbose-specific iic component K02795 - - 0.000000000000000000000000008079 121.0
DYD3_k127_2146173_5 Phosphotransferase System K11189 - - 0.0000000000000000003501 96.0
DYD3_k127_2146173_6 PTS system fructose IIA component - - - 0.00001327 53.0
DYD3_k127_2147966_0 Zinc carboxypeptidase - - - 1.021e-197 623.0
DYD3_k127_2147966_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000302,GO:0000988,GO:0000990,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009410,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009889,GO:0010035,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0043207,GO:0043254,GO:0044087,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0075136,GO:0080090,GO:0090034,GO:0097159,GO:0140110,GO:1901363,GO:1901700,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000001309 74.0
DYD3_k127_2147966_2 SnoaL-like domain - - - 0.000004039 55.0
DYD3_k127_2147966_3 PDZ DHR GLGF domain protein K07177 - - 0.00003487 52.0
DYD3_k127_2147966_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00003522 46.0
DYD3_k127_2149609_0 Phosphoglucose isomerase K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005897 404.0
DYD3_k127_2149609_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 317.0
DYD3_k127_2149609_2 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 309.0
DYD3_k127_2168099_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 451.0
DYD3_k127_2168099_1 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000121 206.0
DYD3_k127_2168099_2 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000006811 175.0
DYD3_k127_2168099_3 - - - - 0.00000000000002437 79.0
DYD3_k127_2181780_0 Putative ATP-binding cassette K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 346.0
DYD3_k127_2181780_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004421 337.0
DYD3_k127_2181780_2 PFAM transglutaminase domain protein - - - 0.000001013 61.0
DYD3_k127_2181780_3 Tetratricopeptide repeat - - - 0.000007924 51.0
DYD3_k127_2182624_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 340.0
DYD3_k127_2182624_1 transferase activity, transferring glycosyl groups K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000009049 253.0
DYD3_k127_2182624_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000112 209.0
DYD3_k127_2198941_0 Molybdopterin oxidoreductase Fe4S4 domain K00123,K22015 - 1.17.1.9,1.17.99.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006807 493.0
DYD3_k127_2198941_1 3-oxoacid CoA-transferase K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003769 325.0
DYD3_k127_2198941_2 Coenzyme A transferase K01029 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 293.0
DYD3_k127_2198941_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000003687 144.0
DYD3_k127_2198941_4 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.000000000000000000001998 104.0
DYD3_k127_2198941_5 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000003542 58.0
DYD3_k127_2217999_0 Acetamidase/Formamidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 296.0
DYD3_k127_2217999_1 Surface antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000001596 232.0
DYD3_k127_2217999_2 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000001691 224.0
DYD3_k127_2217999_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000001074 170.0
DYD3_k127_2217999_4 SdiA-regulated - - - 0.00000000000000001461 94.0
DYD3_k127_2225376_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301 584.0
DYD3_k127_2227230_0 3' exoribonuclease, RNase T-like K03656,K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 350.0
DYD3_k127_2227230_1 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000007266 238.0
DYD3_k127_2227230_2 PFAM Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000022 216.0
DYD3_k127_2227230_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000003411 215.0
DYD3_k127_2227230_4 Acyltransferase - - - 0.000000000000000000000000000000000000000000000000004379 188.0
DYD3_k127_2230957_0 Nickel-dependent hydrogenase K05922,K06281 - 1.12.5.1,1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006025 473.0
DYD3_k127_2230957_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000001014 230.0
DYD3_k127_2230957_2 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.0000000000000000000000000000000000000000000001344 181.0
DYD3_k127_2230957_3 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.000000000000000000000000000000000002929 144.0
DYD3_k127_2230957_4 Belongs to the carbamoyltransferase HypF family K04656 - - 0.0000000000000004454 83.0
DYD3_k127_2230957_5 nickel cation binding K04651,K19640 - - 0.00007287 49.0
DYD3_k127_2267282_0 H( )-stimulated, divalent metal cation uptake system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 389.0
DYD3_k127_2267282_1 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.00000007742 54.0
DYD3_k127_2291200_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000001592 226.0
DYD3_k127_2291200_1 Predicted permease YjgP/YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000005882 193.0
DYD3_k127_2298081_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 456.0
DYD3_k127_2298081_1 (ABC) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 370.0
DYD3_k127_2298081_2 aminopeptidase N - - - 0.00000000000000000000000000006572 132.0
DYD3_k127_2354005_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 353.0
DYD3_k127_2354005_1 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 302.0
DYD3_k127_2354005_2 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.0000000000000000000000000000000000000007986 154.0
DYD3_k127_2354005_3 methyl-accepting chemotaxis protein K03406 - - 0.000000000000000000000003202 110.0
DYD3_k127_2354005_4 LytR cell envelope-related transcriptional attenuator - - - 0.00000000000003011 81.0
DYD3_k127_2361911_0 3-phosphoshikimate 1-carboxyvinyltransferase activity K00800 GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:0071944,GO:1901576 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 364.0
DYD3_k127_2361911_1 Cytidylate kinase K00945 - 2.7.4.25 0.000000000000000000000000000000000000000002945 164.0
DYD3_k127_2361911_2 Peptidase S15 K06978 - - 0.0000000000000000000000000000000000000002402 155.0
DYD3_k127_2361911_3 cheY-homologous receiver domain K11443 - - 0.00000000000000000000000001508 113.0
DYD3_k127_2361911_4 Protein of unknown function (DUF1559) - - - 0.000001277 57.0
DYD3_k127_2363206_0 FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 428.0
DYD3_k127_2363206_1 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000001067 200.0
DYD3_k127_2363206_2 - - - - 0.000000000000000000000000000000000000000000004816 169.0
DYD3_k127_2363206_3 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000002004 78.0
DYD3_k127_2371851_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667,K01668 - 4.1.99.1,4.1.99.2 5.241e-203 641.0
DYD3_k127_2371851_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000001619 182.0
DYD3_k127_239968_0 ROK family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 386.0
DYD3_k127_239968_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 328.0
DYD3_k127_239968_2 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 314.0
DYD3_k127_239968_3 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000002983 231.0
DYD3_k127_239968_4 - - - - 0.00000000000000001009 91.0
DYD3_k127_2404367_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 374.0
DYD3_k127_2404367_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 313.0
DYD3_k127_2424523_0 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 494.0
DYD3_k127_2424523_1 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000979 319.0
DYD3_k127_2424523_2 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003974 290.0
DYD3_k127_2424523_3 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001317 258.0
DYD3_k127_2424523_4 Domain of unknown function (DUF4974) - - - 0.000000000000000000000000000000000000000000000004528 184.0
DYD3_k127_2424523_5 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000006033 178.0
DYD3_k127_2424523_6 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000003285 171.0
DYD3_k127_2424523_7 DUF218 domain - - - 0.000000000000000000000000000000000009379 145.0
DYD3_k127_2424523_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000001805 138.0
DYD3_k127_2424523_9 ECF sigma factor K03088 - - 0.000000000000000000000000006536 115.0
DYD3_k127_245875_0 Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000961 71.0
DYD3_k127_245875_1 domain, Protein - - - 0.00000000006195 72.0
DYD3_k127_245875_2 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000005957 70.0
DYD3_k127_2464353_0 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000009263 196.0
DYD3_k127_2464353_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000007931 147.0
DYD3_k127_2477921_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 349.0
DYD3_k127_2477921_1 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008261 267.0
DYD3_k127_2477921_10 TonB C terminal K03832 - - 0.000000000000000000006029 101.0
DYD3_k127_2477921_11 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000004876 85.0
DYD3_k127_2477921_12 Glycoprotease family K14742 - - 0.0000000000002421 81.0
DYD3_k127_2477921_13 LysM domain - - - 0.000000000004712 78.0
DYD3_k127_2477921_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000000000000000000000003981 201.0
DYD3_k127_2477921_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000006411 199.0
DYD3_k127_2477921_4 MotA/TolQ/ExbB proton channel family K03562 - - 0.0000000000000000000000000000000000000000000000000000002247 203.0
DYD3_k127_2477921_5 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000000000000000001309 131.0
DYD3_k127_2477921_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000005309 139.0
DYD3_k127_2477921_7 Belongs to the ompA family K03640 - - 0.00000000000000000000000007349 120.0
DYD3_k127_2477921_8 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925,K07102 - 2.7.1.221 0.00000000000000000000001822 107.0
DYD3_k127_2477921_9 Psort location Cytoplasmic, score 8.87 K14742 - - 0.0000000000000000000002143 106.0
DYD3_k127_2490424_0 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008198 451.0
DYD3_k127_2490424_1 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 322.0
DYD3_k127_2490424_2 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000008605 147.0
DYD3_k127_2494455_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 597.0
DYD3_k127_2494455_1 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000002903 268.0
DYD3_k127_2494455_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000001846 148.0
DYD3_k127_2494455_3 deoxyhypusine monooxygenase activity K01661 - 4.1.3.36 0.00000009628 63.0
DYD3_k127_2503768_0 Dehydrogenase K00117 - 1.1.5.2 6.109e-205 657.0
DYD3_k127_2503768_1 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 366.0
DYD3_k127_2503768_2 HupE / UreJ protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009125 358.0
DYD3_k127_2503768_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0004335 47.0
DYD3_k127_2506682_0 Domain of unknown function (DUF5117) - - - 1.149e-262 836.0
DYD3_k127_2506682_1 - - - - 0.0000000000000000000003994 102.0
DYD3_k127_2506682_2 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin K14645,K17734 - - 0.00001102 49.0
DYD3_k127_2521932_0 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 345.0
DYD3_k127_2521932_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 339.0
DYD3_k127_2521932_2 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 317.0
DYD3_k127_2521932_3 PFAM binding-protein-dependent transport systems inner membrane component K11071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 298.0
DYD3_k127_2521932_4 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004727 251.0
DYD3_k127_2527176_0 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004986 332.0
DYD3_k127_2527176_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000001863 227.0
DYD3_k127_2527176_2 Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily K05829 - - 0.000000000000000000000000000000000000000002644 164.0
DYD3_k127_253386_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 374.0
DYD3_k127_253386_1 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007119 362.0
DYD3_k127_253386_2 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 364.0
DYD3_k127_253386_3 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005497 269.0
DYD3_k127_253386_4 creatininase K01470,K22232 - 3.5.2.10 0.000000000000000000000000000000001835 136.0
DYD3_k127_253386_5 MacB-like periplasmic core domain K02004 - - 0.0000000001443 63.0
DYD3_k127_2542544_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007837 442.0
DYD3_k127_2542544_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001895 284.0
DYD3_k127_2542544_2 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 0.0000000000000000000000000000000000000000000000000003464 186.0
DYD3_k127_2542544_3 integral membrane protein K07027 - - 0.0000000000000000000000002649 119.0
DYD3_k127_2542544_4 FHA domain - - - 0.0002199 50.0
DYD3_k127_2544193_0 Amidohydrolase family - - - 2.133e-219 695.0
DYD3_k127_2544193_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 397.0
DYD3_k127_2549824_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000007192 171.0
DYD3_k127_2549824_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000002837 107.0
DYD3_k127_257855_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007135 578.0
DYD3_k127_257855_1 nuclease activity - - - 0.000000000000000000000000000000006137 132.0
DYD3_k127_257855_2 Bacterial antitoxin of type II TA system, VapB - - - 0.0000000000000007926 79.0
DYD3_k127_262956_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 2.047e-288 902.0
DYD3_k127_262956_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 1.73e-243 764.0
DYD3_k127_262956_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 512.0
DYD3_k127_262956_3 Belongs to the glycosyl hydrolase 57 family K03406,K16149 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000746 326.0
DYD3_k127_2635700_0 PFAM AMP-dependent synthetase and ligase K01895,K01896 - 6.2.1.1,6.2.1.2 0.00000000000000000000000000000000000000000004647 170.0
DYD3_k127_2635700_1 Predicted membrane protein (DUF2254) - - - 0.000000000000000003153 93.0
DYD3_k127_2638223_0 Thiolase, C-terminal domain K00626,K07508 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 446.0
DYD3_k127_2638223_1 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 314.0
DYD3_k127_2638223_2 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 300.0
DYD3_k127_2638223_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000001664 174.0
DYD3_k127_2638223_4 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000004098 109.0
DYD3_k127_2638223_5 - - - - 0.0000000000000000000002447 108.0
DYD3_k127_2638223_6 - - - - 0.00000000000000004963 89.0
DYD3_k127_2638223_7 - - - - 0.0000003499 59.0
DYD3_k127_2661687_0 Prolyl oligopeptidase family - - - 6.219e-228 722.0
DYD3_k127_2661687_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000002136 111.0
DYD3_k127_2672192_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 444.0
DYD3_k127_2672192_1 COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase K03856,K04516 - 2.5.1.54,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 441.0
DYD3_k127_2672192_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 445.0
DYD3_k127_2672192_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000001783 222.0
DYD3_k127_2672192_4 anthranilate synthase K01658,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000003306 209.0
DYD3_k127_2672192_5 Tetratricopeptide repeat - - - 0.000006622 55.0
DYD3_k127_2728476_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 1.772e-258 806.0
DYD3_k127_2728476_1 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.0000000000000000000000000000000006666 146.0
DYD3_k127_2729545_0 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 582.0
DYD3_k127_2729545_1 - - - - 0.00000000000000000000000000000000000000000000000000000001219 208.0
DYD3_k127_2729545_2 COG NOG09722 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000000000000001635 208.0
DYD3_k127_2729545_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000323 117.0
DYD3_k127_2738337_0 UPF0365 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007233 422.0
DYD3_k127_2738337_1 - K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 298.0
DYD3_k127_2738337_2 Phospholipid methyltransferase - - - 0.00000000000000000000000000000000000000000000000000004296 195.0
DYD3_k127_2738337_3 universal stress protein - - - 0.0000000000000000000005071 108.0
DYD3_k127_2746355_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00066 - 1.1.1.132 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 489.0
DYD3_k127_2746355_1 Glycosyl transferases group 1 K21001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004142 256.0
DYD3_k127_2753709_0 FAD dependent oxidoreductase - - - 3.325e-195 619.0
DYD3_k127_2753709_1 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 314.0
DYD3_k127_2770174_0 PFAM AMP-dependent synthetase and ligase K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 303.0
DYD3_k127_2770174_1 - - - - 0.00000000000000000000000000000000000000002059 162.0
DYD3_k127_2775107_0 P2 response regulator binding domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 372.0
DYD3_k127_2775107_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004032 340.0
DYD3_k127_2775107_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000001371 240.0
DYD3_k127_2775107_3 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000000000000000000000009315 205.0
DYD3_k127_2775107_4 CheC-like family K03410 - - 0.00000000000000000000000000000000000000000000003852 180.0
DYD3_k127_2775107_5 PFAM CheW domain protein K03408 - - 0.00000007755 59.0
DYD3_k127_2783527_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 9.149e-210 657.0
DYD3_k127_2783527_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 461.0
DYD3_k127_2783527_2 O-acyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000888 331.0
DYD3_k127_2783527_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000305 237.0
DYD3_k127_2783527_4 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000006706 144.0
DYD3_k127_2783527_5 Alginate lyase - - - 0.000001973 58.0
DYD3_k127_2789247_0 amidohydrolase K12941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 345.0
DYD3_k127_2789247_1 protein.. Source PGD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 317.0
DYD3_k127_2789247_2 Peptidase dimerisation domain K01438 - 3.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000007583 252.0
DYD3_k127_2789247_3 - - - - 0.00000000000000000003992 98.0
DYD3_k127_2789247_4 Protein of unknown function (DUF433) - - - 0.0000004548 59.0
DYD3_k127_2799979_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 524.0
DYD3_k127_2799979_1 DinB family - - - 0.00000000000004046 79.0
DYD3_k127_2799979_2 PIN domain - - - 0.00003851 51.0
DYD3_k127_2799979_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000959 47.0
DYD3_k127_2805789_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 297.0
DYD3_k127_2805789_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000036 271.0
DYD3_k127_2805789_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000005288 162.0
DYD3_k127_2820295_0 Bacterial extracellular solute-binding protein K15495 - - 0.00000000000000000000000000000000000001303 151.0
DYD3_k127_2820295_1 Methionine synthase K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.00000000000000000000000000000000000002809 145.0
DYD3_k127_2820295_2 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000002932 112.0
DYD3_k127_2820295_3 YGGT family K02221 - - 0.000000000000000000000001898 110.0
DYD3_k127_2820295_4 Belongs to the UPF0235 family K09131 - - 0.000000000000000004973 93.0
DYD3_k127_2820295_5 Acetyltransferase (GNAT) domain - - - 0.00004449 52.0
DYD3_k127_2851193_0 PFAM NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 0.0 1204.0
DYD3_k127_2851193_1 Amidohydrolase family K06015 - 3.5.1.81 8.064e-232 731.0
DYD3_k127_2851193_2 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000004996 139.0
DYD3_k127_2851193_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000003396 49.0
DYD3_k127_2875805_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005403 608.0
DYD3_k127_2875805_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 520.0
DYD3_k127_2875805_2 MviN-like protein K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 496.0
DYD3_k127_2875805_3 Bacillithiol biosynthesis BshC K22136 - - 0.000000000000000000000000000000000000000000000000000000002413 218.0
DYD3_k127_2875805_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000001161 202.0
DYD3_k127_2875805_5 Domain of unknown function (DUF374) K09778 - - 0.00000000000000000000000000000000008284 141.0
DYD3_k127_2875805_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000007601 117.0
DYD3_k127_2919800_0 Glycosyl transferases group 1 K12994 - 2.4.1.349 0.0000000000000000000000000000000000000000000000000000000000000000000008871 259.0
DYD3_k127_2919800_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000002935 223.0
DYD3_k127_2919800_2 - - - - 0.000000000000000000000000000000000004786 151.0
DYD3_k127_2919800_3 Peptidase family M50 - - - 0.0000000000000000003577 91.0
DYD3_k127_2919800_4 transferase activity, transferring glycosyl groups - - - 0.000000000000185 82.0
DYD3_k127_2926633_0 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001865 268.0
DYD3_k127_2926633_1 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000009405 108.0
DYD3_k127_2926633_2 Polymer-forming cytoskeletal - - - 0.00000006143 59.0
DYD3_k127_2926633_3 Ribbon-helix-helix domain - - - 0.000001247 56.0
DYD3_k127_2984665_0 Selenocysteine-specific translation elongation factor K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006537 287.0
DYD3_k127_2984665_1 ABC transporter K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000004192 226.0
DYD3_k127_2984665_2 FecCD transport family K02015 - - 0.000000000000000000000000000000005247 132.0
DYD3_k127_2984665_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000007738 85.0
DYD3_k127_3008889_0 Protein of unknown function (DUF1194) K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008681 321.0
DYD3_k127_3008889_1 von Willebrand factor type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000002646 235.0
DYD3_k127_3008889_2 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000001655 86.0
DYD3_k127_3028869_0 Amidohydrolase family K01465,K06015 - 3.5.1.81,3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 591.0
DYD3_k127_3028869_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 585.0
DYD3_k127_3028869_2 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000002008 167.0
DYD3_k127_3028869_3 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000229 138.0
DYD3_k127_3038117_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747 437.0
DYD3_k127_3038117_1 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 299.0
DYD3_k127_3038117_2 transporter K07238,K11021,K16267 - - 0.000000000000000000000000000000000000000000000000000000001901 210.0
DYD3_k127_3038117_3 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000006021 184.0
DYD3_k127_3038117_4 Oxidoreductase family, NAD-binding Rossmann fold K13020 - 1.1.1.335 0.000000000000001465 78.0
DYD3_k127_3041226_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 537.0
DYD3_k127_3052425_0 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 488.0
DYD3_k127_3052425_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000002201 166.0
DYD3_k127_3052425_2 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000001042 136.0
DYD3_k127_3052425_3 - - - - 0.0000000000000000000000000000006012 133.0
DYD3_k127_3052425_6 Copper resistance protein D K07245,K14166 - - 0.0000008977 53.0
DYD3_k127_3078649_0 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000269 297.0
DYD3_k127_3078649_1 Glycosyl hydrolase family 3 C-terminal domain K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000009273 184.0
DYD3_k127_3097319_0 Rhodanese Homology Domain K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006648 396.0
DYD3_k127_3097319_1 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000001362 220.0
DYD3_k127_3120909_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 328.0
DYD3_k127_3120909_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000003765 222.0
DYD3_k127_3120909_2 Inner membrane component of T3SS, cytoplasmic domain - GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0006109,GO:0006110,GO:0006140,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010563,GO:0010675,GO:0010677,GO:0016020,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0030312,GO:0030808,GO:0030809,GO:0030811,GO:0030812,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0036211,GO:0042325,GO:0042326,GO:0042802,GO:0043170,GO:0043412,GO:0043457,GO:0043467,GO:0043470,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045820,GO:0045912,GO:0045934,GO:0045936,GO:0045980,GO:0046777,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051193,GO:0051195,GO:0051196,GO:0051198,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1900371,GO:1900372,GO:1900542,GO:1900543,GO:1901564,GO:1903578,GO:1903579,GO:2001169,GO:2001170 - 0.000000000001056 81.0
DYD3_k127_3123127_0 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000001304 239.0
DYD3_k127_3123127_1 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000003559 236.0
DYD3_k127_3123127_2 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000005193 213.0
DYD3_k127_3123127_3 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000009721 126.0
DYD3_k127_3125448_0 asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 577.0
DYD3_k127_3125448_1 geranylgeranyl reductase activity K14257 - 1.14.19.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 484.0
DYD3_k127_3125448_2 iron ion binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 451.0
DYD3_k127_3125448_3 Elongator protein 3, MiaB family, Radical SAM K06936 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 304.0
DYD3_k127_3125448_4 Allophanate hydrolase subunit 2 K01457 - 3.5.1.54 0.0000000000000000000000000000000000000000000000000000000000004963 223.0
DYD3_k127_3125448_5 Pfam:AHS1 - - - 0.00000000000000000000000000000000000000000000000001479 188.0
DYD3_k127_3125448_6 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000001723 147.0
DYD3_k127_3125448_7 PFAM transposase IS3 IS911 family protein K07483 - - 0.00000002458 59.0
DYD3_k127_3125448_8 NHL repeat - - - 0.0007777 51.0
DYD3_k127_312949_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 551.0
DYD3_k127_312949_1 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000007244 223.0
DYD3_k127_312949_2 Mazg nucleotide pyrophosphohydrolase K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000003043 171.0
DYD3_k127_312949_3 cellulose binding - - - 0.00000000000000000000000000000000000000000001158 166.0
DYD3_k127_312949_4 - - - - 0.00000000002756 68.0
DYD3_k127_3130328_0 Conserved region in glutamate synthase K22083 - 2.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 334.0
DYD3_k127_3130328_1 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000009303 262.0
DYD3_k127_3130328_2 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.00000000000000000000000000000000000000000000001566 181.0
DYD3_k127_3130328_3 Protein of unknown function (DUF1572) - - - 0.0000000000000000000000000000000000006022 145.0
DYD3_k127_3130328_4 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0006464,GO:0006476,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018205,GO:0019213,GO:0019538,GO:0033558,GO:0034979,GO:0034983,GO:0035601,GO:0036048,GO:0036049,GO:0036055,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0071704,GO:0098542,GO:0098732,GO:0140096,GO:1901564 - 0.00001271 48.0
DYD3_k127_3146909_0 amine dehydrogenase activity K17285 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003096 288.0
DYD3_k127_3146909_1 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007254 274.0
DYD3_k127_3146909_2 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000001008 127.0
DYD3_k127_3146909_3 Sulfotransferase K01014,K01016,K01025 - 2.8.2.1,2.8.2.4 0.0000000000000000000004228 109.0
DYD3_k127_3149093_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 524.0
DYD3_k127_3149093_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 497.0
DYD3_k127_3149093_2 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.0000000000000000000000000000000000000000107 164.0
DYD3_k127_3149093_3 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000001954 145.0
DYD3_k127_3149093_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000006646 133.0
DYD3_k127_3152837_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 463.0
DYD3_k127_3152837_1 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 448.0
DYD3_k127_3152837_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 412.0
DYD3_k127_3155412_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004653 267.0
DYD3_k127_3155412_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388,K12527 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,1.97.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000007543 252.0
DYD3_k127_3155412_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.00000000000000000000000000000000000000001758 161.0
DYD3_k127_3155412_3 Rieske 2Fe-2S - - - 0.000000000000000000004057 103.0
DYD3_k127_3155412_4 Cytochrome c - - - 0.00000003872 62.0
DYD3_k127_3155412_5 Belongs to the glycosyl hydrolase 26 family - - - 0.0002182 53.0
DYD3_k127_3163357_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000009917 172.0
DYD3_k127_3163357_1 diacylglycerol kinase catalytic domain protein - - - 0.0000000000000000000000000000009316 134.0
DYD3_k127_3163357_2 Transcriptional regulatory protein, C terminal - - - 0.000006735 53.0
DYD3_k127_3192108_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000003423 109.0
DYD3_k127_3195694_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008588 400.0
DYD3_k127_3195694_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000005696 216.0
DYD3_k127_3195694_3 TIGRFAM TonB-dependent heme hemoglobin receptor family protein K02014,K16087 - - 0.000000000000000000000000000000000000001395 169.0
DYD3_k127_3196158_0 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000269 285.0
DYD3_k127_3196158_1 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000003795 182.0
DYD3_k127_3196158_2 PilT protein domain protein - - - 0.00000000000000000000000000000634 122.0
DYD3_k127_3196158_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000396 92.0
DYD3_k127_3211703_0 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 490.0
DYD3_k127_3211703_1 Zinc dependent phospholipase C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008449 323.0
DYD3_k127_3211703_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 295.0
DYD3_k127_3211703_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000001408 87.0
DYD3_k127_3215005_0 cellulose binding - - - 3.302e-276 866.0
DYD3_k127_3215005_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 595.0
DYD3_k127_3215005_2 pyrroloquinoline quinone binding K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000002861 274.0
DYD3_k127_3215005_3 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000002017 222.0
DYD3_k127_3215005_4 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000009509 203.0
DYD3_k127_3215005_5 cellulose binding - - - 0.00000000000000000000000000000000009485 140.0
DYD3_k127_3231888_0 repeat protein - - - 5.156e-197 642.0
DYD3_k127_3231888_1 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000003008 186.0
DYD3_k127_3242006_0 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 456.0
DYD3_k127_3242006_1 Formamidopyrimidine-DNA glycosylase N-terminal domain K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 297.0
DYD3_k127_3242006_2 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009135 296.0
DYD3_k127_3242006_3 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001959 271.0
DYD3_k127_3242006_4 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000007182 200.0
DYD3_k127_3253290_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002691 272.0
DYD3_k127_3253290_1 MazG nucleotide pyrophosphohydrolase domain K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000001522 237.0
DYD3_k127_3253290_2 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000001266 196.0
DYD3_k127_3253290_3 Domain of unknown function (DUF1844) - - - 0.0004424 45.0
DYD3_k127_3262219_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 9.506e-281 888.0
DYD3_k127_3262219_1 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000103 156.0
DYD3_k127_3262509_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 387.0
DYD3_k127_3262509_1 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 307.0
DYD3_k127_3262509_2 Helix-hairpin-helix motif K02337 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000003993 204.0
DYD3_k127_3275646_0 Domain in cystathionine beta-synthase and other proteins. - - - 9.318e-199 638.0
DYD3_k127_3275646_1 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 572.0
DYD3_k127_3275646_2 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002737 549.0
DYD3_k127_3275646_3 HEAT repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009994 285.0
DYD3_k127_3275646_4 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000001952 225.0
DYD3_k127_3275646_5 HEAT repeats - - - 0.000000000000000000000000000000000009542 146.0
DYD3_k127_3275646_7 translation initiation factor activity K06996 - - 0.000000000000000000007111 101.0
DYD3_k127_3275646_8 TM2 domain - - - 0.0000000000000005197 82.0
DYD3_k127_3275646_9 Putative porin - - - 0.0000000000774 74.0
DYD3_k127_3280955_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000819 611.0
DYD3_k127_3280955_1 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 362.0
DYD3_k127_3280955_2 ADP-ribosylglycohydrolase - - - 0.000000000005116 76.0
DYD3_k127_3283557_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 469.0
DYD3_k127_3283557_1 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 405.0
DYD3_k127_3283557_2 Redoxin - - - 0.0000000000000000000000001448 109.0
DYD3_k127_3283557_3 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.0000000001664 63.0
DYD3_k127_3283557_4 Redoxin K03564 - 1.11.1.15 0.0002564 48.0
DYD3_k127_3290599_0 WD40-like Beta Propeller Repeat - - - 3.37e-215 701.0
DYD3_k127_3290599_1 PFAM Peptidase M20 K12941 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008483 374.0
DYD3_k127_3290599_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 369.0
DYD3_k127_3324062_0 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 570.0
DYD3_k127_3324062_1 - - - - 0.0000000000000000000000000000000000000000000000000000008362 199.0
DYD3_k127_3324062_2 PFAM Kelch repeat type 1 K03529 - - 0.000000000000000000000000000000000000000000001167 177.0
DYD3_k127_3324062_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000004072 146.0
DYD3_k127_3341196_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 6.447e-282 873.0
DYD3_k127_3341196_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0035375,GO:0035966,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000001037 116.0
DYD3_k127_3341196_2 NLP P60 protein - - - 0.00000000000000000000001832 109.0
DYD3_k127_3341196_3 Metallo-beta-lactamase domain protein - - - 0.00000000000000004885 85.0
DYD3_k127_3369114_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 3.918e-312 972.0
DYD3_k127_3369114_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 556.0
DYD3_k127_3369114_2 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 498.0
DYD3_k127_3369114_3 Cytochrome C assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004028 250.0
DYD3_k127_3369114_4 CcmB protein K02194 - - 0.0000000000000000000000000000000000000000000000000000000000006791 218.0
DYD3_k127_3369114_5 water channel activity K02440,K06188,K09874 - - 0.000000000000000000000000000000000000000000000000000000002195 209.0
DYD3_k127_3369114_6 ATPases associated with a variety of cellular activities K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000002876 188.0
DYD3_k127_3369114_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000001224 175.0
DYD3_k127_3369114_8 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000003578 170.0
DYD3_k127_3369114_9 involved in lipopolysaccharide synthesis - - - 0.00009794 52.0
DYD3_k127_3390565_0 4 iron, 4 sulfur cluster binding K03737 - 1.2.7.1 0.0 1922.0
DYD3_k127_3390565_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 1.109e-229 729.0
DYD3_k127_3390565_2 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 327.0
DYD3_k127_3390565_3 Fe-S cluster K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 306.0
DYD3_k127_3390565_4 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002531 290.0
DYD3_k127_3390565_5 Part of a membrane complex involved in electron transport K03615 - - 0.0000000000000000000000000000000000000000000000000208 185.0
DYD3_k127_3390565_8 Domain of unknown function (DUF4282) - - - 0.0004021 47.0
DYD3_k127_3406193_0 Creatinase/Prolidase N-terminal domain K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003434 556.0
DYD3_k127_3406193_1 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 546.0
DYD3_k127_3406193_10 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000000000003245 235.0
DYD3_k127_3406193_11 Winged helix DNA-binding domain K09927 - - 0.000000000000000000000000000000000000000000000000000000000224 218.0
DYD3_k127_3406193_12 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000008069 201.0
DYD3_k127_3406193_13 phosphonoacetaldehyde hydrolase activity K19270 - 3.1.3.23 0.00000000000000000000000000000000000000000000000000001877 196.0
DYD3_k127_3406193_14 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000001785 190.0
DYD3_k127_3406193_15 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000002257 190.0
DYD3_k127_3406193_16 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000001167 168.0
DYD3_k127_3406193_17 - - - - 0.0000000000000000000000000000000000001374 145.0
DYD3_k127_3406193_18 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000000000000000000000000000000000007068 154.0
DYD3_k127_3406193_19 Tellurite resistance protein TerB - - - 0.00000000000000000000000000000002759 132.0
DYD3_k127_3406193_2 imidazolonepropionase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 383.0
DYD3_k127_3406193_20 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.000000000000000000000000000001623 129.0
DYD3_k127_3406193_21 - - - - 0.00000000000000000000000000003679 124.0
DYD3_k127_3406193_22 Methylated dna-protein cysteine methyltransferase K07443 - - 0.00000000000000000000000007001 111.0
DYD3_k127_3406193_25 - - - - 0.0000000000242 72.0
DYD3_k127_3406193_26 Phospholipase_D-nuclease N-terminal - - - 0.0000001635 57.0
DYD3_k127_3406193_27 lactoylglutathione lyase activity - - - 0.0000003718 58.0
DYD3_k127_3406193_3 Threonyl alanyl tRNA synthetase SAD K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 346.0
DYD3_k127_3406193_4 abc transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000414 326.0
DYD3_k127_3406193_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 292.0
DYD3_k127_3406193_6 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008879 287.0
DYD3_k127_3406193_7 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002247 265.0
DYD3_k127_3406193_8 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.0000000000000000000000000000000000000000000000000000000000000000002235 241.0
DYD3_k127_3406193_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001815 230.0
DYD3_k127_3411403_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.57e-199 627.0
DYD3_k127_3411403_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 411.0
DYD3_k127_3411403_2 COG0668 Small-conductance mechanosensitive channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
DYD3_k127_3415887_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 319.0
DYD3_k127_3415887_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000172 251.0
DYD3_k127_3415887_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000002954 164.0
DYD3_k127_3427017_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 5.877e-254 790.0
DYD3_k127_3427017_1 - - - - 0.000000000000000075 84.0
DYD3_k127_3431176_0 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 424.0
DYD3_k127_3431176_1 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 381.0
DYD3_k127_3431176_2 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000163 268.0
DYD3_k127_3448276_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 507.0
DYD3_k127_3448276_1 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 455.0
DYD3_k127_3448276_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000005419 244.0
DYD3_k127_3448276_3 Uncharacterised protein family UPF0102 K07460 - - 0.0000000000000000000000123 106.0
DYD3_k127_3448276_4 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000143 85.0
DYD3_k127_3453740_0 Homoserine dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 309.0
DYD3_k127_3453740_1 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000001956 194.0
DYD3_k127_3459321_0 Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000004996 216.0
DYD3_k127_3459321_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000001642 173.0
DYD3_k127_3479785_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 550.0
DYD3_k127_3479785_1 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 375.0
DYD3_k127_3479785_2 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 318.0
DYD3_k127_3479785_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 312.0
DYD3_k127_3479785_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002648 262.0
DYD3_k127_3479785_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000377 233.0
DYD3_k127_3479785_6 LVIVD repeat - - - 0.000000000000000000000000000000000000000002295 177.0
DYD3_k127_3479785_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000002115 136.0
DYD3_k127_3494826_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 543.0
DYD3_k127_3494826_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 463.0
DYD3_k127_3494826_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000005297 115.0
DYD3_k127_3494826_3 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.000000000000000000000000227 106.0
DYD3_k127_3494826_4 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000003663 99.0
DYD3_k127_3494826_5 Ribosomal protein L34 K02914 - - 0.000000000000000003948 85.0
DYD3_k127_3494826_6 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000004824 53.0
DYD3_k127_3521581_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003034 527.0
DYD3_k127_3521581_1 Transcriptional regulator - - - 0.00008374 51.0
DYD3_k127_35272_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001578 293.0
DYD3_k127_35272_1 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000006091 193.0
DYD3_k127_3535185_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1163.0
DYD3_k127_3535185_1 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 8.258e-265 836.0
DYD3_k127_3535185_2 Tetratricopeptide repeat - - - 0.00000002447 64.0
DYD3_k127_3538866_0 WD domain, G-beta repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 376.0
DYD3_k127_3538866_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000001872 155.0
DYD3_k127_3538866_2 AAA ATPase domain - - - 0.00000000000000000000000001869 129.0
DYD3_k127_3538866_3 Belongs to the phosphoglycerate mutase family K01834,K22306 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237 3.1.3.85,5.4.2.11 0.0000000000000000000001377 110.0
DYD3_k127_3538866_4 phosphoglycerate mutase family - - - 0.00000000000000000005093 102.0
DYD3_k127_3570818_0 ASPIC UnbV domain protein - - - 1.368e-202 648.0
DYD3_k127_3570818_1 Oligopeptide/dipeptide transporter, C-terminal region K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005375 332.0
DYD3_k127_3570818_2 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 308.0
DYD3_k127_3570818_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008349 307.0
DYD3_k127_3570818_4 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009604 274.0
DYD3_k127_3570818_5 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000001915 260.0
DYD3_k127_3570818_6 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000001098 229.0
DYD3_k127_3570818_7 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000001129 227.0
DYD3_k127_3570818_8 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.00000000000000000000000000000000000000000000000000000005406 202.0
DYD3_k127_3570818_9 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000001145 145.0
DYD3_k127_3577032_0 Peptidase family S58 K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 497.0
DYD3_k127_3577032_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 375.0
DYD3_k127_3577032_2 CbiX - - - 0.0000000000000000000000000000000000000000000000000164 190.0
DYD3_k127_3577032_3 Peptidase C26 K07010 - - 0.0000000000003683 70.0
DYD3_k127_3579259_0 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 377.0
DYD3_k127_3579259_1 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000005877 261.0
DYD3_k127_3579259_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000006849 262.0
DYD3_k127_3579259_3 HEAT repeats - - - 0.00000000000000000000000000000000000000000000000062 199.0
DYD3_k127_3579259_4 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000002566 186.0
DYD3_k127_3579943_0 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 2.308e-274 875.0
DYD3_k127_3579943_1 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007439 430.0
DYD3_k127_3579943_2 Putative aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001224 252.0
DYD3_k127_3579943_3 domain, Protein K01179,K07260,K13735 - 3.2.1.4,3.4.17.14 0.0000000000000000000000000000000000000000000001639 189.0
DYD3_k127_359783_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 2.945e-195 616.0
DYD3_k127_359783_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007755 468.0
DYD3_k127_359783_10 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000004146 225.0
DYD3_k127_359783_11 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000003 158.0
DYD3_k127_359783_12 SnoaL-like domain - - - 0.000000000008372 72.0
DYD3_k127_359783_2 Putative zinc-binding metallo-peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003357 448.0
DYD3_k127_359783_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007603 394.0
DYD3_k127_359783_4 CYTH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 311.0
DYD3_k127_359783_5 PFAM nucleoside H symporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006293 295.0
DYD3_k127_359783_6 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000003577 261.0
DYD3_k127_359783_7 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001422 240.0
DYD3_k127_359783_8 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000003088 235.0
DYD3_k127_359783_9 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000003341 247.0
DYD3_k127_3637748_0 Sodium:neurotransmitter symporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 525.0
DYD3_k127_3637748_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000001031 242.0
DYD3_k127_3637748_2 response regulator K07782 - - 0.000000000000000000000000000000000000000000000000000000000000005659 228.0
DYD3_k127_3637748_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000004132 141.0
DYD3_k127_3637748_4 electron transfer activity - - - 0.000000000007869 71.0
DYD3_k127_3637748_5 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000372 50.0
DYD3_k127_3640505_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 591.0
DYD3_k127_3640505_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008473 286.0
DYD3_k127_3640505_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000001123 146.0
DYD3_k127_3640505_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000003412 124.0
DYD3_k127_3640505_4 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000008832 128.0
DYD3_k127_3640505_5 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000005697 61.0
DYD3_k127_364922_0 Sortilin, neurotensin receptor 3, - - - 1.164e-316 991.0
DYD3_k127_364922_1 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.0000000000000000001047 93.0
DYD3_k127_364922_2 nitric oxide dioxygenase activity - - - 0.00000000000004522 79.0
DYD3_k127_3657495_0 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 396.0
DYD3_k127_3657495_1 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 325.0
DYD3_k127_3657495_2 Lipopolysaccharide-assembly, LptC-related - - - 0.000009161 49.0
DYD3_k127_3661401_0 Amidohydrolase family - - - 7.302e-253 803.0
DYD3_k127_3661401_1 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 4.12e-239 772.0
DYD3_k127_3661401_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 394.0
DYD3_k127_3661401_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007029 267.0
DYD3_k127_3661401_4 - - - - 0.000000000000000000000000000000000000000319 159.0
DYD3_k127_3661401_5 Beta-lactamase - - - 0.0000000000000000000000000000000000000005017 154.0
DYD3_k127_3661401_6 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000004374 129.0
DYD3_k127_3664131_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000006626 257.0
DYD3_k127_3664131_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000005118 237.0
DYD3_k127_3664131_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000001828 194.0
DYD3_k127_3664131_3 - - - - 0.00000000000000000000000000000000003327 138.0
DYD3_k127_3664131_4 - - - - 0.000000000000000000000000001806 114.0
DYD3_k127_3664131_5 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000002663 91.0
DYD3_k127_3664389_0 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005428 491.0
DYD3_k127_3664389_1 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 406.0
DYD3_k127_3664389_2 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 335.0
DYD3_k127_3664389_3 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000002025 93.0
DYD3_k127_3664389_4 Transcriptional regulator PadR-like family - - - 0.0000000000000004619 82.0
DYD3_k127_3679087_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 449.0
DYD3_k127_3679087_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 302.0
DYD3_k127_3679087_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000006937 140.0
DYD3_k127_3680185_0 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000004762 227.0
DYD3_k127_3680185_1 3-hydroxyanthranilate 3,4-dioxygenase activity - - - 0.0000000000000000000000000000000000000000000001213 170.0
DYD3_k127_3680185_2 PFAM Rhomboid family protein - - - 0.0000000000000000000000000000000009442 144.0
DYD3_k127_3680185_3 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000006367 93.0
DYD3_k127_3689098_0 TIGRFAM anion transporter K14445 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009033 466.0
DYD3_k127_3689098_1 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 416.0
DYD3_k127_3689098_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 412.0
DYD3_k127_3689098_3 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003874 280.0
DYD3_k127_3689098_4 COG0023 Translation initiation factor 1 (eIF-1 SUI1) and related proteins K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000115 151.0
DYD3_k127_3689098_5 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000001024 96.0
DYD3_k127_3689098_6 - - - - 0.0000000000000008213 82.0
DYD3_k127_369029_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 481.0
DYD3_k127_3715247_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000002635 136.0
DYD3_k127_3715247_1 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000003215 118.0
DYD3_k127_3715247_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000006214 82.0
DYD3_k127_3715247_3 Small GTP-binding protein K06883 - - 0.0000001166 54.0
DYD3_k127_3731607_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 385.0
DYD3_k127_3731607_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000008176 209.0
DYD3_k127_3731607_2 isomerase - - - 0.000000000000000000000000000000000007221 148.0
DYD3_k127_3731607_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000001249 144.0
DYD3_k127_3731607_4 protein flavinylation K03734 - 2.7.1.180 0.000000000000000000000000000003602 130.0
DYD3_k127_3741605_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 347.0
DYD3_k127_3741605_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000005993 246.0
DYD3_k127_3741605_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000003186 176.0
DYD3_k127_3741605_3 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000002146 135.0
DYD3_k127_3741605_4 MerR HTH family regulatory protein - - - 0.000000000000000000000007415 109.0
DYD3_k127_3741605_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000002428 85.0
DYD3_k127_3741605_6 Histidine kinase-like ATPase domain - - - 0.000000000003371 79.0
DYD3_k127_3741605_7 - - - - 0.000000000008917 74.0
DYD3_k127_3741605_8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02667 - - 0.00002905 52.0
DYD3_k127_3741605_9 Tfp pilus assembly protein FimT - - - 0.0001781 50.0
DYD3_k127_3757952_0 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 601.0
DYD3_k127_3757952_1 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 390.0
DYD3_k127_3757952_2 PFAM Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 322.0
DYD3_k127_3757952_3 ATPases associated with a variety of cellular activities K05847 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 294.0
DYD3_k127_3757952_4 PFAM Binding-protein-dependent transport system inner membrane component K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002524 252.0
DYD3_k127_3757952_5 Serine aminopeptidase, S33 K06889,K07397 - - 0.000000000000000000000000000007044 120.0
DYD3_k127_3757952_6 OsmC-like protein K06889,K07397 - - 0.000000000002918 70.0
DYD3_k127_3757952_7 FMN-dependent dehydrogenase K16422 - 1.1.3.46 0.0008483 42.0
DYD3_k127_3773392_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000001428 114.0
DYD3_k127_3773392_3 Protein of unknown function (DUF2892) - - - 0.0000000000002243 74.0
DYD3_k127_377464_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 306.0
DYD3_k127_377464_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000001469 180.0
DYD3_k127_377464_2 Transcriptional regulator TenI K00788,K10810 - 2.5.1.3,5.3.99.10 0.0000000000000000000003976 107.0
DYD3_k127_3793606_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000272 250.0
DYD3_k127_3793606_1 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.0000000000000000000000000000000001689 137.0
DYD3_k127_3793606_2 FtsX-like permease family K02004 - - 0.00000000000000000000000000001528 125.0
DYD3_k127_3794894_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 7.639e-210 676.0
DYD3_k127_3794894_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 514.0
DYD3_k127_3794894_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006141 485.0
DYD3_k127_3794894_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000001736 150.0
DYD3_k127_3794894_4 - - - - 0.000004537 50.0
DYD3_k127_3794894_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0001851 48.0
DYD3_k127_3824284_0 DNA polymerase III alpha subunit K02337,K14162 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 594.0
DYD3_k127_3854860_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 579.0
DYD3_k127_3854860_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004966 267.0
DYD3_k127_3854860_2 - - - - 0.000000006998 61.0
DYD3_k127_386203_0 cellulose binding - - - 3.634e-266 848.0
DYD3_k127_3870030_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 3.094e-216 685.0
DYD3_k127_3870030_1 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000004125 228.0
DYD3_k127_3870030_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000001366 164.0
DYD3_k127_3870030_3 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000002274 155.0
DYD3_k127_3870030_4 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000002254 134.0
DYD3_k127_3870030_5 - - - - 0.00000003572 64.0
DYD3_k127_3874984_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 323.0
DYD3_k127_3874984_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000002819 123.0
DYD3_k127_3874984_2 WD40 domain protein beta Propeller - - - 0.00000000000000000005689 104.0
DYD3_k127_3874984_4 Gram-negative-bacterium-type cell outer membrane assembly K21572 - - 0.0001671 49.0
DYD3_k127_3881266_0 Zinc carboxypeptidase - - - 0.0 1124.0
DYD3_k127_3881266_1 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006951 531.0
DYD3_k127_3881266_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 400.0
DYD3_k127_3881266_3 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000004776 229.0
DYD3_k127_3881266_4 3-demethylubiquinone-9 3-O-methyltransferase activity K03428 - 2.1.1.11 0.000000000000000000000001183 111.0
DYD3_k127_3882561_0 Bacterial membrane protein, YfhO - - - 6.138e-209 676.0
DYD3_k127_3882561_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 319.0
DYD3_k127_3882561_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000006122 100.0
DYD3_k127_3882561_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000003486 77.0
DYD3_k127_3888254_0 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006811 336.0
DYD3_k127_3888254_1 - - - - 0.0000000000000000000000000000000000000000000000002671 190.0
DYD3_k127_3888254_2 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000001296 112.0
DYD3_k127_3888254_3 Sugar-specific transcriptional regulator TrmB - - - 0.00005057 53.0
DYD3_k127_3896343_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 4.555e-220 693.0
DYD3_k127_3896343_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000001333 242.0
DYD3_k127_3916585_0 ABC transporter - - - 0.00000000000000000000000000000000000000000000002783 180.0
DYD3_k127_3916585_1 - K10716 - - 0.0000000000000000000000001246 111.0
DYD3_k127_3920060_0 PFAM Rieske 2Fe-2S domain protein K00479,K00499 - 1.14.15.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 413.0
DYD3_k127_3920060_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 332.0
DYD3_k127_3920060_2 - - - - 0.000000000000000000000000006288 111.0
DYD3_k127_3920060_3 AAA domain - - - 0.00000002654 56.0
DYD3_k127_392875_0 protein kinase activity - - - 1.967e-209 684.0
DYD3_k127_392875_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 417.0
DYD3_k127_392875_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000005125 154.0
DYD3_k127_3935059_0 Macro domain - - - 0.000000000000000000000000000000000000000000000000000000000747 216.0
DYD3_k127_3935059_1 MOSC domain - - - 0.000000000000000000000000000000000000000001775 171.0
DYD3_k127_3935059_2 Outer membrane receptor for ferrienterochelin and colicins - - - 0.000001462 61.0
DYD3_k127_3945723_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 421.0
DYD3_k127_3945723_1 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000000000000009113 166.0
DYD3_k127_3945723_2 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000004102 106.0
DYD3_k127_3945723_3 Protein of unknown function DUF116 K09729 - - 0.000000000000000002947 94.0
DYD3_k127_3945723_4 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor - - - 0.000000001971 67.0
DYD3_k127_3951350_0 GIY-YIG type nucleases (URI domain) K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001248 280.0
DYD3_k127_3951350_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000009049 253.0
DYD3_k127_3951350_2 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000004223 147.0
DYD3_k127_3951350_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000005797 121.0
DYD3_k127_3951350_4 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.0000000000000000000000001516 108.0
DYD3_k127_3968478_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 557.0
DYD3_k127_3968478_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003944 408.0
DYD3_k127_3968478_2 Competence-damaged protein K03742 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006074 377.0
DYD3_k127_3968478_3 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000001547 166.0
DYD3_k127_3968478_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000478 130.0
DYD3_k127_3968478_5 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000001509 107.0
DYD3_k127_3971081_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007179 631.0
DYD3_k127_3971081_1 - - - - 0.0000000000000000000000000000000000000004124 164.0
DYD3_k127_3971081_2 - - - - 0.0000000000001341 77.0
DYD3_k127_3971465_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 614.0
DYD3_k127_3974621_0 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007742 459.0
DYD3_k127_3974621_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 289.0
DYD3_k127_3974621_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K06034 - 4.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001369 280.0
DYD3_k127_3974621_3 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000002294 136.0
DYD3_k127_3978607_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 582.0
DYD3_k127_3978607_1 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001722 250.0
DYD3_k127_3990611_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.201e-294 910.0
DYD3_k127_3990611_1 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 569.0
DYD3_k127_3990611_2 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 486.0
DYD3_k127_3990611_3 Amidase - - - 0.00000000000000000000000000000000000000001202 161.0
DYD3_k127_4001855_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 432.0
DYD3_k127_4001855_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000005391 259.0
DYD3_k127_4001855_2 Cell cycle protein K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008247 253.0
DYD3_k127_4001855_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000707 125.0
DYD3_k127_4002351_0 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 321.0
DYD3_k127_4002351_1 PFAM BNR Asp-box repeat - - - 0.00000000000000000000000000000000000000000000000007458 188.0
DYD3_k127_4002759_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 611.0
DYD3_k127_4002759_1 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 601.0
DYD3_k127_4002759_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 482.0
DYD3_k127_4002759_3 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 448.0
DYD3_k127_4002759_4 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 294.0
DYD3_k127_4002759_5 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000002371 193.0
DYD3_k127_4002759_6 Protein of unknown function (DUF1015) - - - 0.00000000000000000008584 91.0
DYD3_k127_4002759_7 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000001827 59.0
DYD3_k127_4066165_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 416.0
DYD3_k127_4066165_1 NAD-dependent epimerase dehydratase K01784,K17947 - 5.1.3.2,5.1.3.25 0.00000000000000000000000000000000000000000000000000000000002183 217.0
DYD3_k127_4066165_2 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000003917 203.0
DYD3_k127_4066165_3 PFAM Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000001749 156.0
DYD3_k127_4066165_4 chaperone-mediated protein folding - - - 0.000002496 60.0
DYD3_k127_4066165_5 TonB-linked outer membrane protein, SusC RagA family - - - 0.00008354 49.0
DYD3_k127_4066386_0 Xaa-Pro aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 470.0
DYD3_k127_4066386_1 PFAM Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 306.0
DYD3_k127_4066386_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000003908 223.0
DYD3_k127_4066386_3 CarboxypepD_reg-like domain K02014 - - 0.00000000000000000001271 97.0
DYD3_k127_4097263_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1240.0
DYD3_k127_4097263_1 ABC transporter transmembrane region K11085 - - 5.495e-235 741.0
DYD3_k127_4097263_2 Biotin-lipoyl like - - - 0.00000000000000000187 87.0
DYD3_k127_4125591_0 AMP binding K03322,K07076,K09944,K16263 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0008150,GO:0009268,GO:0009628,GO:0010035,GO:0010038,GO:0016020,GO:0042221,GO:0044464,GO:0046688,GO:0050896,GO:0071944,GO:0097501,GO:1990169 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 349.0
DYD3_k127_4125591_1 transmembrane transport - - - 0.0000000000000000000000000000005531 130.0
DYD3_k127_4125591_2 nuclear chromosome segregation - - - 0.000003196 50.0
DYD3_k127_414030_0 Protein kinase domain K12132 - 2.7.11.1 4.707e-244 777.0
DYD3_k127_4145446_0 Polyprenyl synthetase K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006684 336.0
DYD3_k127_4145446_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000002841 207.0
DYD3_k127_4145446_2 Domain of unknown function (DUF4321) - - - 0.000000000000000000000005385 104.0
DYD3_k127_4145446_3 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000004419 91.0
DYD3_k127_4145446_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000001759 73.0
DYD3_k127_4164532_0 PFAM sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006254 450.0
DYD3_k127_4164532_1 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000002924 193.0
DYD3_k127_4164532_2 Carboxylesterase family - - - 0.00000000003892 69.0
DYD3_k127_4173454_0 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 361.0
DYD3_k127_4173454_1 Peptidase family M3 K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 357.0
DYD3_k127_4173454_2 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 347.0
DYD3_k127_4178877_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 449.0
DYD3_k127_4178877_1 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000000000004596 235.0
DYD3_k127_4178877_2 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000287 219.0
DYD3_k127_4178877_3 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000408 203.0
DYD3_k127_4178877_4 TonB-dependent Receptor Plug Domain - - - 0.0000000003449 73.0
DYD3_k127_4178877_5 PFAM blue (type 1) copper domain protein - - - 0.0009509 51.0
DYD3_k127_4182500_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 469.0
DYD3_k127_4182500_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 449.0
DYD3_k127_4182500_10 COG1862 Preprotein translocase subunit YajC K03210 - - 0.000000000000005674 78.0
DYD3_k127_4182500_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 336.0
DYD3_k127_4182500_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006957 293.0
DYD3_k127_4182500_4 ABC transporter transmembrane region K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001858 283.0
DYD3_k127_4182500_5 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000003393 197.0
DYD3_k127_4182500_6 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000000000000000000000000000003756 200.0
DYD3_k127_4182500_7 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000002393 175.0
DYD3_k127_4182500_8 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000884 158.0
DYD3_k127_4182500_9 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000008197 85.0
DYD3_k127_4188705_0 glyoxalase III activity - - - 0.00000000000000000000000000000000000000000000000002619 184.0
DYD3_k127_4188705_1 Domain of unknown function (DUF4287) - - - 0.0000000000000000000000000000000000000000000000124 177.0
DYD3_k127_4188705_2 Acetyltransferase (GNAT) domain K03830 - - 0.0000000000000000000000000000000111 134.0
DYD3_k127_4188705_3 D-aminopeptidase K16203 - - 0.0000000000000000001995 101.0
DYD3_k127_4188705_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000002067 66.0
DYD3_k127_419789_0 electron transport chain K00347,K03614 - 1.6.5.8 2.042e-223 699.0
DYD3_k127_419789_1 electron transport chain K00347,K03614,K21163 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 338.0
DYD3_k127_4202976_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 316.0
DYD3_k127_4202976_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000007474 241.0
DYD3_k127_4202976_2 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000005309 168.0
DYD3_k127_42074_0 homoserine kinase activity K00823,K07250 - 2.6.1.19,2.6.1.22 1.95e-246 779.0
DYD3_k127_42074_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009369 293.0
DYD3_k127_4224033_0 esterase - - - 2.394e-259 812.0
DYD3_k127_4224033_1 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005849 255.0
DYD3_k127_4224033_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000004316 259.0
DYD3_k127_4224033_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000006696 85.0
DYD3_k127_422654_0 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 432.0
DYD3_k127_422654_1 arylsulfatase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008939 342.0
DYD3_k127_422654_2 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000211 154.0
DYD3_k127_423373_0 Glucose inhibited division protein A K21401 - 1.3.99.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002321 291.0
DYD3_k127_423373_1 Integral membrane protein DUF92 - - - 0.00000000000000000000000000000000001457 145.0
DYD3_k127_423373_2 Flavin reductase like domain - - - 0.000000000000006968 78.0
DYD3_k127_4236000_0 Aminotransferase class-V - - - 5.069e-200 632.0
DYD3_k127_4236000_1 Peptidase M66 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 309.0
DYD3_k127_4236000_2 PFAM Sodium calcium exchanger membrane region K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000001217 245.0
DYD3_k127_4236000_3 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000244 141.0
DYD3_k127_4236000_4 Histidine kinase - - - 0.0008703 43.0
DYD3_k127_424799_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 483.0
DYD3_k127_424799_1 chloride channel K03281 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 324.0
DYD3_k127_424799_2 NUDIX domain - - - 0.000000000000000000000000000000000000005067 154.0
DYD3_k127_424799_3 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000102 148.0
DYD3_k127_424799_4 MlaD protein K02067 - - 0.000000000000000000000000009735 117.0
DYD3_k127_4253102_0 Formate/nitrite transporter K21990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 358.0
DYD3_k127_4253102_1 Iron-regulated protein - - - 0.00000000000000000000000000000000000000000000000000000000000542 215.0
DYD3_k127_4253102_2 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000006983 142.0
DYD3_k127_4253102_3 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000001171 79.0
DYD3_k127_4253102_4 - - - - 0.000000000004965 74.0
DYD3_k127_4258214_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 586.0
DYD3_k127_4258214_1 Aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002288 272.0
DYD3_k127_4258214_2 - - - - 0.00000000000000000000744 100.0
DYD3_k127_4260526_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 6.417e-209 675.0
DYD3_k127_4260526_1 TonB dependent receptor K02014 - - 0.00000000000000000001051 100.0
DYD3_k127_4267603_0 cellulose binding - - - 0.0 1220.0
DYD3_k127_4267603_1 Domain of unknown function (DUF5117) - - - 4.766e-286 902.0
DYD3_k127_4267603_2 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 471.0
DYD3_k127_4267603_3 Amidohydrolase family K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 464.0
DYD3_k127_4267603_4 COG0668 Small-conductance mechanosensitive channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001055 271.0
DYD3_k127_4267603_5 40-residue YVTN family beta-propeller repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002381 273.0
DYD3_k127_4267603_6 - - - - 0.000000000000000000000558 105.0
DYD3_k127_4267603_7 COG0668 Small-conductance mechanosensitive channel - - - 0.000000000000000000005258 104.0
DYD3_k127_4269818_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - 0.000000000000000000000000000000000000008703 160.0
DYD3_k127_4269818_1 -O-antigen - - - 0.0000000000000004881 91.0
DYD3_k127_4270207_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.966e-218 704.0
DYD3_k127_4270207_1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000004674 216.0
DYD3_k127_4270207_2 - - - - 0.000000000000000000000000003625 116.0
DYD3_k127_4270207_3 Xylose isomerase K01816 - 5.3.1.22 0.0000000000000000001294 88.0
DYD3_k127_427614_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15372 - 2.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007975 438.0
DYD3_k127_427614_1 Peptidase family S58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 409.0
DYD3_k127_427614_10 - - - - 0.00000000008998 67.0
DYD3_k127_427614_2 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008251 306.0
DYD3_k127_427614_3 SMART Metal-dependent phosphohydrolase, HD region K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 295.0
DYD3_k127_427614_4 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002327 284.0
DYD3_k127_427614_5 Enoyl-CoA hydratase carnithine racemase K01692 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000172 244.0
DYD3_k127_427614_6 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000008509 212.0
DYD3_k127_427614_7 all-trans-retinol 13,14-reductase activity - - - 0.00000000000000000000000000000000000000000000003928 177.0
DYD3_k127_427614_8 TIGRFAM peptidase S26B, signal peptidase K13280 - 3.4.21.89 0.00000000000000000000002097 109.0
DYD3_k127_4286178_0 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001214 255.0
DYD3_k127_4286178_1 Protein of unknown function (DUF433) - - - 0.00000000000000000001339 95.0
DYD3_k127_4295387_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 5.813e-253 796.0
DYD3_k127_4295387_1 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000006414 165.0
DYD3_k127_4295387_2 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.00000000000000000000000000000000000007348 156.0
DYD3_k127_4295387_3 - - - - 0.0000000000000000000006886 101.0
DYD3_k127_4295387_4 subunit of a heme lyase K02200 - - 0.0000000000000000000339 100.0
DYD3_k127_4311655_0 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009058 283.0
DYD3_k127_4311655_1 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000007763 220.0
DYD3_k127_4311655_2 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000004716 142.0
DYD3_k127_4311655_3 DNA restriction-modification system - - - 0.0000000000000000000000444 108.0
DYD3_k127_4311655_4 DinB family - - - 0.0000000000000000002298 88.0
DYD3_k127_4311655_5 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.0000000000000005874 85.0
DYD3_k127_4312215_0 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 377.0
DYD3_k127_4312215_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 343.0
DYD3_k127_4312215_2 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 290.0
DYD3_k127_4316936_0 MatE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008655 568.0
DYD3_k127_4316936_1 major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 482.0
DYD3_k127_4316936_10 Domain of unknown function (DUF4136) - - - 0.000000000000000004731 95.0
DYD3_k127_4316936_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008335 430.0
DYD3_k127_4316936_3 ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008911 394.0
DYD3_k127_4316936_4 Branched-chain amino acid transport system / permease component K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009252 317.0
DYD3_k127_4316936_5 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 298.0
DYD3_k127_4316936_6 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001925 265.0
DYD3_k127_4316936_7 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000348 235.0
DYD3_k127_4316936_8 Belongs to the short-chain dehydrogenases reductases (SDR) family K14189 - - 0.000000000000000000000000000000000000000000000001428 193.0
DYD3_k127_4316936_9 Low molecular weight phosphatase family - - - 0.0000000000000000000000000000004086 127.0
DYD3_k127_4327278_0 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 428.0
DYD3_k127_4327278_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 426.0
DYD3_k127_4327278_2 long-chain fatty acid transporting porin activity K07267 - - 0.00000000000000000000000008083 112.0
DYD3_k127_4327278_3 Cytochrome c - - - 0.00000000001428 73.0
DYD3_k127_4327278_4 Cytochrome c - - - 0.00003632 53.0
DYD3_k127_4341952_0 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000003234 240.0
DYD3_k127_4341952_1 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000006971 195.0
DYD3_k127_4341952_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000009135 160.0
DYD3_k127_4341952_3 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.0000000000000000000000000286 121.0
DYD3_k127_4341952_4 Control of competence regulator ComK, YlbF/YmcA - - - 0.00000000000002376 77.0
DYD3_k127_4341952_5 Belongs to the protein N5-glutamine methyltransferase family K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.0000000000008578 71.0
DYD3_k127_4370632_0 Peptidase family M49 - - - 5.851e-197 629.0
DYD3_k127_4370632_1 cobalamin-transporting ATPase activity K02014,K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 430.0
DYD3_k127_4370632_2 Proline dehydrogenase K00318 - - 0.000000006253 60.0
DYD3_k127_4384202_0 radical SAM domain protein - - - 3.61e-203 645.0
DYD3_k127_4384202_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000003662 125.0
DYD3_k127_4384202_2 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000006171 124.0
DYD3_k127_4394260_0 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 500.0
DYD3_k127_4394260_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 378.0
DYD3_k127_4394260_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 310.0
DYD3_k127_4394260_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001546 264.0
DYD3_k127_4394260_4 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000009501 208.0
DYD3_k127_4394260_5 Tetratricopeptide repeat - - - 0.00000000000000000000000001755 123.0
DYD3_k127_4394260_6 amine dehydrogenase activity - - - 0.000009599 57.0
DYD3_k127_4404346_0 Peptidase family M48 K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000001174 239.0
DYD3_k127_4404346_1 protein domain associated with - - - 0.00000000000000000000000000000000000000000000000008347 189.0
DYD3_k127_4404346_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.00000000000000000000004513 101.0
DYD3_k127_4407930_0 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 401.0
DYD3_k127_4407930_1 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 291.0
DYD3_k127_4407930_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000005363 201.0
DYD3_k127_4416413_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 355.0
DYD3_k127_4416413_1 Eco57I restriction-modification methylase K07317 - 2.1.1.72 0.000001071 58.0
DYD3_k127_4428904_0 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 473.0
DYD3_k127_4428904_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 425.0
DYD3_k127_4428904_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 384.0
DYD3_k127_4428904_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004143 376.0
DYD3_k127_4428904_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000007515 247.0
DYD3_k127_4428904_5 AhpC/TSA family - - - 0.0000000000000000000000000000000000000000000000000000000000004888 228.0
DYD3_k127_4428904_6 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000003452 91.0
DYD3_k127_4430354_0 peptidyl-tyrosine sulfation - - - 0.0 1049.0
DYD3_k127_4430354_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000005158 245.0
DYD3_k127_4441528_0 PFAM peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01354 - 3.4.21.83 5.744e-206 659.0
DYD3_k127_4441528_1 Psort location Cytoplasmic, score 8.87 - - - 0.00000000000000000302 85.0
DYD3_k127_445728_0 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 329.0
DYD3_k127_445728_1 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000008116 261.0
DYD3_k127_445728_2 PPIC-type PPIASE domain K03770 - 5.2.1.8 0.0000000000000000000000000000004975 132.0
DYD3_k127_4458864_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 471.0
DYD3_k127_4458864_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 342.0
DYD3_k127_4461094_0 Peptidase family S58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 445.0
DYD3_k127_4461094_1 Amidinotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003737 303.0
DYD3_k127_4461094_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000005642 195.0
DYD3_k127_4466057_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 479.0
DYD3_k127_4466057_1 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 351.0
DYD3_k127_4466057_2 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000004846 102.0
DYD3_k127_4466726_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 2.605e-198 629.0
DYD3_k127_4466726_1 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007852 495.0
DYD3_k127_4466726_2 sensor histidine kinase response - - - 0.0000000000000000000002448 106.0
DYD3_k127_4466726_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000004234 51.0
DYD3_k127_4466726_4 Tetratricopeptide repeat - - - 0.000007404 55.0
DYD3_k127_4466726_5 YtxH-like protein - - - 0.0006452 48.0
DYD3_k127_4467982_0 fatty acid desaturase K00508 - 1.14.19.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 453.0
DYD3_k127_4467982_1 Phosphotransferase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 433.0
DYD3_k127_4467982_2 protein conserved in cyanobacteria - - - 0.0000000000000000002503 92.0
DYD3_k127_4467982_3 protein conserved in cyanobacteria - - - 0.00000000000003324 72.0
DYD3_k127_4467982_4 Amino acid permease K03294 - - 0.00006664 48.0
DYD3_k127_4477479_0 4Fe-4S dicluster domain K00184 - - 3.929e-242 782.0
DYD3_k127_4477479_1 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 526.0
DYD3_k127_4477479_2 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006193 496.0
DYD3_k127_4477479_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000475 286.0
DYD3_k127_4477479_4 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 GO:0001510,GO:0002128,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.200,3.5.1.19,6.1.1.16 0.00000000000000000000000000000000000000000000000518 190.0
DYD3_k127_4477479_5 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000000000000000000000001448 163.0
DYD3_k127_4477479_6 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000007868 132.0
DYD3_k127_4477479_7 ATPase-coupled sulfate transmembrane transporter activity K15496 - - 0.000000000000000000000000001525 117.0
DYD3_k127_4477479_8 - - - - 0.0002282 50.0
DYD3_k127_4495416_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003497 486.0
DYD3_k127_4495416_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007968 392.0
DYD3_k127_4495416_2 MacB-like periplasmic core domain K02004,K05685 - - 0.0000000003064 61.0
DYD3_k127_4511302_0 Ribonuclease E/G family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 387.0
DYD3_k127_4511302_1 Acyl-CoA dehydrogenase, C-terminal domain K18244 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 291.0
DYD3_k127_4511302_2 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000001142 141.0
DYD3_k127_4511302_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000003694 126.0
DYD3_k127_4563925_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000122 273.0
DYD3_k127_4563925_1 Rieske [2Fe-2S] domain - - - 0.00000000000000000000000000000000000000002063 158.0
DYD3_k127_4563925_2 - - - - 0.000000000000000000000000003216 117.0
DYD3_k127_4563925_3 - - - - 0.00000000000000000000001548 108.0
DYD3_k127_4563925_4 Bacterial protein of unknown function (DUF885) - - - 0.0000000000005757 76.0
DYD3_k127_4572165_0 Aminotransferase class-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 543.0
DYD3_k127_4572165_1 Aldehyde dehydrogenase family K00140,K22187 - 1.2.1.18,1.2.1.27 0.0000000000000006238 77.0
DYD3_k127_458674_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 570.0
DYD3_k127_458674_1 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009932 483.0
DYD3_k127_458674_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000006358 131.0
DYD3_k127_458674_3 - - - - 0.0000000000000001782 92.0
DYD3_k127_458674_4 - - - - 0.00000000001264 76.0
DYD3_k127_458674_5 Domain of unknown function (DUF1844) - - - 0.00005664 47.0
DYD3_k127_4615057_0 lysine biosynthetic process via aminoadipic acid - - - 4.451e-217 698.0
DYD3_k127_4615057_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 479.0
DYD3_k127_4615057_2 type II secretion system protein E K02243,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 388.0
DYD3_k127_4615057_3 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 295.0
DYD3_k127_4615057_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003887 261.0
DYD3_k127_4615057_5 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000001078 229.0
DYD3_k127_4615057_6 - - - - 0.0000000000000000000000000000000000000000000008631 170.0
DYD3_k127_4615057_7 - - - - 0.00000000000000000005928 96.0
DYD3_k127_4672620_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 521.0
DYD3_k127_4672620_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008194 344.0
DYD3_k127_4672620_2 regulatory protein RecX K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000001129 73.0
DYD3_k127_4674583_0 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000452 258.0
DYD3_k127_4674583_2 Recombinase zinc beta ribbon domain - - - 0.000001943 49.0
DYD3_k127_4674583_3 Trypsin-like peptidase domain K08372 - - 0.0001061 54.0
DYD3_k127_4687037_0 Helix-hairpin-helix class 2 (Pol1 family) motifs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 389.0
DYD3_k127_4687037_1 COG0454 Histone acetyltransferase HPA2 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 372.0
DYD3_k127_4687037_2 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000005069 220.0
DYD3_k127_4687037_3 COG0454 Histone acetyltransferase HPA2 and related - - - 0.0000000000000000000000000000000000000000000000000000005515 200.0
DYD3_k127_4687037_4 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000007321 136.0
DYD3_k127_4687037_5 - - - - 0.000000000837 64.0
DYD3_k127_4710969_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 572.0
DYD3_k127_4710969_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006676 355.0
DYD3_k127_4710969_2 B3/4 domain K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000009324 200.0
DYD3_k127_4710969_3 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000001177 72.0
DYD3_k127_471489_0 Peptidase family M20/M25/M40 K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 492.0
DYD3_k127_471489_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 344.0
DYD3_k127_471489_2 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 347.0
DYD3_k127_471489_3 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002977 301.0
DYD3_k127_471489_4 Diaminopropionate ammonia-lyase K01751 - 4.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000002764 251.0
DYD3_k127_471489_6 Trehalose utilisation - - - 0.0000000000000004998 82.0
DYD3_k127_4735617_0 Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily K03615 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 323.0
DYD3_k127_4735617_1 Part of a membrane complex involved in electron transport K00347,K03614 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 321.0
DYD3_k127_4735617_2 Part of a membrane complex involved in electron transport - - - 0.000000000000000000000000002032 123.0
DYD3_k127_4743775_0 AMP-binding enzyme C-terminal domain K00666,K01897,K18660 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 592.0
DYD3_k127_4743775_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 518.0
DYD3_k127_4745220_0 Pyruvate flavodoxin ferredoxin K00174 - 1.2.7.11,1.2.7.3 8.039e-242 762.0
DYD3_k127_4745220_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 424.0
DYD3_k127_4745220_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 308.0
DYD3_k127_4745220_3 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000000000000000000000000000000000000000000000000004648 230.0
DYD3_k127_4745220_4 DinB family - - - 0.0000000000000000000000000000000002555 141.0
DYD3_k127_4745220_5 domain protein K13735 - - 0.00000000000000000000000000002676 136.0
DYD3_k127_4749038_0 Type II/IV secretion system protein K02283,K20527 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 525.0
DYD3_k127_4749038_1 Belongs to the GSP D family K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002295 287.0
DYD3_k127_4749038_2 PFAM SAF domain K02279 - - 0.000000000000000000000000000000000000000000000001052 185.0
DYD3_k127_4749038_3 AAA domain K02282 - - 0.000000000000000000000000000000000000000001204 173.0
DYD3_k127_4749038_4 Type II secretion system (T2SS), protein F K12510 - - 0.000000000000000000000000000000000000001109 157.0
DYD3_k127_4749038_5 Type IV leader peptidase family K02278 - 3.4.23.43 0.00000000000001436 81.0
DYD3_k127_4749038_6 PFAM TadE family protein - - - 0.0000000001658 68.0
DYD3_k127_4749038_7 Putative Tad-like Flp pilus-assembly - - - 0.00001621 57.0
DYD3_k127_4769119_0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 475.0
DYD3_k127_4769119_1 Phosphoglycerate kinase K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 434.0
DYD3_k127_4769119_2 Phosphoribosyl transferase domain - - - 0.00000000000000000000007866 103.0
DYD3_k127_4772368_0 permease - - - 0.0000000000000000000000000000000000000000000158 175.0
DYD3_k127_4772368_1 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000001323 156.0
DYD3_k127_4772368_2 domain, Protein - - - 0.000006006 60.0
DYD3_k127_4779437_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 498.0
DYD3_k127_4779437_1 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 313.0
DYD3_k127_4779437_2 Disulphide isomerase - - - 0.00000000000000000000000000000000000000000000006199 173.0
DYD3_k127_4779437_3 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000000000000001211 166.0
DYD3_k127_4784986_1 Di-haem oxidoreductase, putative peroxidase - - - 0.0000000000000000000000623 107.0
DYD3_k127_4784986_2 Carboxypeptidase regulatory-like domain - - - 0.0000000000000009668 88.0
DYD3_k127_4822425_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01668 - 4.1.99.2 7.341e-259 802.0
DYD3_k127_4822425_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000001874 248.0
DYD3_k127_4822425_2 Cysteine synthase cystathionine beta-synthase family protein K01738 - 2.5.1.47 0.000000000000000000000000000000000001257 141.0
DYD3_k127_4822425_3 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.000000000000000000000000000003741 134.0
DYD3_k127_4829542_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 606.0
DYD3_k127_4829542_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0007587 49.0
DYD3_k127_4831862_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009549 346.0
DYD3_k127_4831862_1 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 304.0
DYD3_k127_4831862_2 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002133 269.0
DYD3_k127_4855867_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 351.0
DYD3_k127_4855867_1 COG0119 Isopropylmalate homocitrate citramalate synthases K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002487 280.0
DYD3_k127_4855867_2 SmpB protein K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000007231 168.0
DYD3_k127_4855867_3 Protein of unknown function (DUF1679) - - - 0.0000000000000000000000000000001153 136.0
DYD3_k127_4855867_4 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.0000000000000000000006502 102.0
DYD3_k127_4861088_0 Oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 569.0
DYD3_k127_4861088_1 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 296.0
DYD3_k127_4861088_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000002146 233.0
DYD3_k127_4861704_0 - - - - 0.00000000000000000000000000008798 130.0
DYD3_k127_4861704_1 Prokaryotic N-terminal methylation motif - - - 0.0000000000000000000006318 100.0
DYD3_k127_4861704_2 - - - - 0.00000000000006514 83.0
DYD3_k127_4861704_3 COG4967 Tfp pilus assembly protein PilV K02671 - - 0.0004613 51.0
DYD3_k127_4874747_0 Bacterial protein of unknown function (DUF885) - - - 1.986e-201 642.0
DYD3_k127_4874747_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 360.0
DYD3_k127_488081_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009174 469.0
DYD3_k127_488081_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 398.0
DYD3_k127_488081_2 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000000000000000000001001 230.0
DYD3_k127_4882432_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1266.0
DYD3_k127_4882432_1 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 434.0
DYD3_k127_4882432_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007549 340.0
DYD3_k127_4882432_3 Cytochrome b/b6/petB K00412 - - 0.000000000000000000000000000000000000000000000000000000000000001019 231.0
DYD3_k127_4882432_4 PFAM Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000002166 227.0
DYD3_k127_4882432_5 Histidine kinase HAMP - - - 0.000000000000000000000000000000000000000000001607 185.0
DYD3_k127_4882432_6 SnoaL-like domain - - - 0.0000000000000000000000000000000000000007007 158.0
DYD3_k127_4882432_7 DNA-binding transcription factor activity - - - 0.00000000000000000000000008011 109.0
DYD3_k127_4882432_8 Belongs to the P(II) protein family K04751 - - 0.000000001727 67.0
DYD3_k127_4882432_9 Large extracellular alpha-helical protein K12548,K13735 - - 0.00003091 55.0
DYD3_k127_4891724_0 gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 479.0
DYD3_k127_4891724_1 Putative prokaryotic signal transducing protein - - - 0.000006464 51.0
DYD3_k127_4904887_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 7.723e-288 897.0
DYD3_k127_4904887_1 Hsp70 protein K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004651 583.0
DYD3_k127_4904887_2 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009865 539.0
DYD3_k127_4904887_3 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 529.0
DYD3_k127_4904887_4 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008816 423.0
DYD3_k127_4904887_5 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 405.0
DYD3_k127_4904887_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000003594 181.0
DYD3_k127_4904887_7 rod shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000003354 168.0
DYD3_k127_4904887_8 rod shape-determining protein MreD K03571 - - 0.0000000000000000001554 97.0
DYD3_k127_4907483_0 PspA/IM30 family K03969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001091 258.0
DYD3_k127_4907483_1 - - - - 0.00000000000000000000000000000000001424 139.0
DYD3_k127_4907483_2 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000003064 109.0
DYD3_k127_493004_0 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 499.0
DYD3_k127_493004_1 PFAM Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000000000000000000000000000000000000000000001845 203.0
DYD3_k127_493004_4 Belongs to the 'phage' integrase family - - - 0.0001485 45.0
DYD3_k127_4935476_0 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000003389 231.0
DYD3_k127_4935476_1 - - - - 0.0003012 51.0
DYD3_k127_4944291_0 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.0000000000000000000000006071 108.0
DYD3_k127_4944291_1 DinB superfamily - - - 0.000000000008141 72.0
DYD3_k127_4944291_2 SnoaL-like domain - - - 0.00003753 54.0
DYD3_k127_4944291_3 OmpA family K03286 - - 0.0002947 52.0
DYD3_k127_4959175_0 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 599.0
DYD3_k127_4959175_1 Zn-dependent protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 358.0
DYD3_k127_4959175_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 359.0
DYD3_k127_4959175_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000001312 88.0
DYD3_k127_4959175_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000001762 81.0
DYD3_k127_4959175_5 membrane - - - 0.0000000002122 72.0
DYD3_k127_4959175_6 Iron-binding zinc finger CDGSH type - - - 0.000000002863 61.0
DYD3_k127_4959175_7 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.00003926 48.0
DYD3_k127_4967123_0 HELICc2 K03722 - 3.6.4.12 1.186e-275 871.0
DYD3_k127_4967123_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006741 321.0
DYD3_k127_4972814_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 538.0
DYD3_k127_4972814_1 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000001412 201.0
DYD3_k127_4972814_2 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000001726 167.0
DYD3_k127_4972814_3 FecCD transport family K02015 - - 0.0000000000000000000000000003745 121.0
DYD3_k127_4972814_4 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000009479 108.0
DYD3_k127_4983880_0 Elongation factor G C-terminus K06207 - - 8.057e-200 631.0
DYD3_k127_4983880_1 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 369.0
DYD3_k127_4994231_0 DNA polymerase alpha chain like domain K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001715 271.0
DYD3_k127_4994231_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000003357 264.0
DYD3_k127_4994231_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000006081 239.0
DYD3_k127_4994231_3 DNA polymerase alpha chain like domain K02347 - - 0.0000000000000000000000000000000000000000000000000000003038 206.0
DYD3_k127_4994231_4 Peptidyl-prolyl cis-trans isomerase K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000001025 199.0
DYD3_k127_4994231_5 Phospholipase D. Active site motifs. K06131 - - 0.00000000000000000000001291 104.0
DYD3_k127_4994231_6 Beta-lactamase - - - 0.000000001411 58.0
DYD3_k127_4994920_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009781 518.0
DYD3_k127_4994920_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 342.0
DYD3_k127_4994920_2 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 - - 0.0000000000000000000000000000000000001976 144.0
DYD3_k127_4994920_3 Zn-ribbon protein possibly nucleic acid-binding K07164 - - 0.000000000000000009686 92.0
DYD3_k127_4994920_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000004869 88.0
DYD3_k127_5006553_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 361.0
DYD3_k127_5011228_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000006125 196.0
DYD3_k127_502554_0 Major facilitator Superfamily K08369 - - 1.112e-197 632.0
DYD3_k127_502554_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 407.0
DYD3_k127_502554_2 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000005469 209.0
DYD3_k127_502554_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000006287 188.0
DYD3_k127_502554_4 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000007468 188.0
DYD3_k127_502554_5 Protein of unknown function (DUF3224) - - - 0.00000000000000000000000000000000000000002131 157.0
DYD3_k127_502554_6 Transglycosylase SLT domain - - - 0.000000000000000000000000000001312 128.0
DYD3_k127_502554_7 cAMP biosynthetic process - - - 0.000000000000000000000000007063 115.0
DYD3_k127_502554_8 DinB family - - - 0.0002972 50.0
DYD3_k127_5035569_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.66e-263 820.0
DYD3_k127_5035569_1 DAHP synthetase I family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005429 279.0
DYD3_k127_5035569_2 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000001272 221.0
DYD3_k127_5035569_3 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.00000000000000000000000000000000000000002349 159.0
DYD3_k127_5035569_4 Lipopolysaccharide-assembly, LptC-related - - - 0.000000000002908 73.0
DYD3_k127_5040374_0 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 585.0
DYD3_k127_5040374_1 CarboxypepD_reg-like domain K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 387.0
DYD3_k127_5040374_2 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 317.0
DYD3_k127_5040374_3 Flavin-nucleotide-binding protein K07005 - - 0.0000000000000000000000000000000000000000000000000000000000000000995 239.0
DYD3_k127_5040374_4 methyltransferase activity K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000005436 226.0
DYD3_k127_5040374_5 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000004824 130.0
DYD3_k127_5042350_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 421.0
DYD3_k127_5042350_1 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000412 230.0
DYD3_k127_5042350_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000001399 220.0
DYD3_k127_5042350_3 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000005354 214.0
DYD3_k127_5081642_0 carboxymethylenebutenolidase activity K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000002002 257.0
DYD3_k127_5081642_1 peptide deformylase activity K01462 - 3.5.1.88 0.00000000000000000000000000000000000007324 154.0
DYD3_k127_5081642_2 HTH domain - - - 0.00000000000000000000000000000000000008523 154.0
DYD3_k127_5081642_3 Cysteine desulfurase activator complex subunit SufB K09014 - - 0.000000000000000000000000000000008272 128.0
DYD3_k127_5081642_4 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000006125 83.0
DYD3_k127_5099734_0 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 337.0
DYD3_k127_5099734_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000003628 183.0
DYD3_k127_5099734_2 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000000000002282 164.0
DYD3_k127_5099734_3 Tetratricopeptide repeat - - - 0.0000002244 64.0
DYD3_k127_5099779_0 Asparaginase K01444 - 3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 359.0
DYD3_k127_5099779_1 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.0000000000000000000000000000000000000000000000000000000002964 207.0
DYD3_k127_5099779_2 Surface antigen - - - 0.0000007441 61.0
DYD3_k127_5139703_0 AMIN domain K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000403 433.0
DYD3_k127_5139703_1 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000001261 154.0
DYD3_k127_5139703_2 Fimbrial assembly protein (PilN) - - - 0.0000000000000000000000000000001411 133.0
DYD3_k127_5139703_3 - - - - 0.0000000000000005321 84.0
DYD3_k127_5139703_4 Pilus assembly protein, PilO K02664 - - 0.0000003499 59.0
DYD3_k127_518554_0 COGs COG2409 drug exporter of the RND superfamily K06994 - - 0.000000000000000000000000000000000000000000000015 186.0
DYD3_k127_518554_1 Iron-sulfur cluster assembly protein - - - 0.0000000000000000000000000006517 120.0
DYD3_k127_518554_2 Matrixin - - - 0.000000000000000002551 96.0
DYD3_k127_518554_3 Protein conserved in bacteria - - - 0.0000000000005601 75.0
DYD3_k127_5204289_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008329 541.0
DYD3_k127_5204289_1 PAS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 363.0
DYD3_k127_5204289_2 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 343.0
DYD3_k127_5204289_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 308.0
DYD3_k127_5204289_4 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 309.0
DYD3_k127_5204289_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000003268 121.0
DYD3_k127_5209981_0 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000008343 244.0
DYD3_k127_5209981_1 PIN domain - - - 0.00000002334 61.0
DYD3_k127_5209981_2 ClpX C4-type zinc finger K03544 - - 0.00001274 55.0
DYD3_k127_5224207_0 DNA ligase (ATP) activity K01971 - 6.5.1.1 6.4e-323 1009.0
DYD3_k127_5224207_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 326.0
DYD3_k127_5224207_10 Cell wall-active antibiotics response 4TMS YvqF - - - 0.0000000002012 70.0
DYD3_k127_5224207_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 308.0
DYD3_k127_5224207_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006864 299.0
DYD3_k127_5224207_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000007578 250.0
DYD3_k127_5224207_5 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000004583 211.0
DYD3_k127_5224207_6 Diacylglycerol kinase catalytic domain (presumed) - - - 0.0000000000000000000000000000000000000000000000000000000511 206.0
DYD3_k127_5224207_7 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000000000001099 158.0
DYD3_k127_5224207_8 S1 P1 nuclease - - - 0.000000000000000000000000000000000000003912 156.0
DYD3_k127_5224207_9 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000005086 158.0
DYD3_k127_522939_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 331.0
DYD3_k127_522939_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000008881 245.0
DYD3_k127_526989_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.301e-194 629.0
DYD3_k127_526989_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000728 457.0
DYD3_k127_526989_2 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000009831 127.0
DYD3_k127_526989_3 PFAM BioY protein K03523 - - 0.000000000000000000000000007129 118.0
DYD3_k127_528364_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000297 115.0
DYD3_k127_5287050_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 521.0
DYD3_k127_5287050_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006061 471.0
DYD3_k127_5287050_2 Di-haem oxidoreductase, putative peroxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 383.0
DYD3_k127_5287050_3 unfolded protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 306.0
DYD3_k127_5287050_4 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.0000000000002848 78.0
DYD3_k127_5291268_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 522.0
DYD3_k127_5291268_1 Zinc finger domain - - - 0.0000000000004785 76.0
DYD3_k127_5296926_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 GO:0000287,GO:0003674,GO:0003824,GO:0004016,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009975,GO:0009987,GO:0016020,GO:0016829,GO:0016849,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0023052,GO:0030145,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044464,GO:0046058,GO:0046390,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052652,GO:0055086,GO:0065007,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009505 349.0
DYD3_k127_5301625_0 B12 binding domain K00548 - 2.1.1.13 0.0 1311.0
DYD3_k127_5301625_1 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 8.55e-250 791.0
DYD3_k127_5301625_2 peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 367.0
DYD3_k127_5303341_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 6.979e-269 855.0
DYD3_k127_5303341_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 591.0
DYD3_k127_5303341_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 467.0
DYD3_k127_5303341_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 450.0
DYD3_k127_5303341_4 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001303 275.0
DYD3_k127_5303341_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000001211 205.0
DYD3_k127_5303341_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 GO:0003674,GO:0005488,GO:0005507,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.00000000000000000000000001776 119.0
DYD3_k127_5303341_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000008822 91.0
DYD3_k127_5303341_8 xylan catabolic process K03932 - - 0.00000000000003905 77.0
DYD3_k127_5303341_9 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.0000000000009271 72.0
DYD3_k127_531132_0 Truncated hemoglobins K06886 - - 0.00000000000000000000000000000000000000000000000000000000000000000734 228.0
DYD3_k127_531132_1 Rieske [2Fe-2S] domain - - - 0.000000000000000000000000000000000000000373 152.0
DYD3_k127_531132_3 Protein of unknown function (DUF1622) - - - 0.00000000001486 68.0
DYD3_k127_531132_4 LysM domain K03642,K03791,K22278 - 3.5.1.104 0.000000001183 64.0
DYD3_k127_5315671_0 UPF0182 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009968 396.0
DYD3_k127_5315671_1 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 360.0
DYD3_k127_5318034_0 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components 2- oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 522.0
DYD3_k127_5318034_1 endonuclease activity - - - 0.000000000000000000009675 93.0
DYD3_k127_5318034_2 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 0.000000000608 61.0
DYD3_k127_5318034_3 tetratricopeptide repeat - - - 0.0004226 45.0
DYD3_k127_532825_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799 512.0
DYD3_k127_532825_1 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007074 492.0
DYD3_k127_532825_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 290.0
DYD3_k127_532825_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008331 273.0
DYD3_k127_532825_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000009527 177.0
DYD3_k127_532825_5 SNARE associated Golgi protein - - - 0.0000003909 60.0
DYD3_k127_532860_0 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 327.0
DYD3_k127_532860_1 - K01992 - - 0.000000000000000000000000000000001177 141.0
DYD3_k127_532860_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000006401 111.0
DYD3_k127_532860_3 lysine biosynthetic process via aminoadipic acid - - - 0.00000008876 63.0
DYD3_k127_5331726_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2015.0
DYD3_k127_5331726_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 1.158e-303 944.0
DYD3_k127_5331726_2 Leishmanolysin - - - 0.000000000000000000000000000000000000000000000000000000000000000000001133 249.0
DYD3_k127_5335424_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.98e-203 645.0
DYD3_k127_5335424_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 578.0
DYD3_k127_5335424_10 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000004107 137.0
DYD3_k127_5335424_11 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000005407 100.0
DYD3_k127_5335424_12 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.0000000000000000000005607 96.0
DYD3_k127_5335424_13 Regulatory protein, FmdB family - - - 0.00000000000000001799 86.0
DYD3_k127_5335424_14 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 0.00000000000000004348 85.0
DYD3_k127_5335424_2 Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006423 428.0
DYD3_k127_5335424_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007936 389.0
DYD3_k127_5335424_4 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 364.0
DYD3_k127_5335424_5 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 329.0
DYD3_k127_5335424_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003028 318.0
DYD3_k127_5335424_7 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000006702 179.0
DYD3_k127_5335424_8 Lumazine binding domain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000002487 164.0
DYD3_k127_5335424_9 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000002751 152.0
DYD3_k127_5337424_0 E1-E2 ATPase K12952 - - 6.522e-233 743.0
DYD3_k127_5337424_1 peptidyl-tyrosine sulfation - - - 0.00006997 49.0
DYD3_k127_5367023_0 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000009238 235.0
DYD3_k127_5367023_1 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000002524 221.0
DYD3_k127_5367023_2 PFAM Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000004041 148.0
DYD3_k127_5367023_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000002054 121.0
DYD3_k127_5367023_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000008987 74.0
DYD3_k127_5367023_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0002559 44.0
DYD3_k127_5371419_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 329.0
DYD3_k127_5371419_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000004687 251.0
DYD3_k127_5371419_2 HEAT repeats - - - 0.00000000000000000000000000000006913 141.0
DYD3_k127_5371419_3 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000002117 109.0
DYD3_k127_5371419_4 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0007787 50.0
DYD3_k127_5389253_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000006567 263.0
DYD3_k127_5389253_1 GGDEF domain - - - 0.000000000000000000000000000000000000003796 154.0
DYD3_k127_5389253_2 Cold shock K03704 - - 0.000000000000000000000000000259 114.0
DYD3_k127_5395620_0 Chlorophyllase enzyme - - - 1.923e-227 723.0
DYD3_k127_5395620_1 long-chain fatty acid transport protein - - - 0.00000000000000000000000000009412 129.0
DYD3_k127_5395620_2 ACT domain - - - 0.00000000000000000000000003473 117.0
DYD3_k127_5395620_3 nitrite reductase [NAD(P)H] activity K00158,K00363,K03809,K05710 - 1.2.3.3,1.6.5.2,1.7.1.15 0.000000000000000000000006282 102.0
DYD3_k127_5413644_0 E1-E2 ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 504.0
DYD3_k127_5413644_1 Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 310.0
DYD3_k127_5413644_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000149 209.0
DYD3_k127_5413644_3 Heme copper-type cytochrome quinol oxidases, subunit 2 K02275 - 1.9.3.1 0.00000000000000000000000000000006634 134.0
DYD3_k127_541450_0 Pyridoxal-dependent decarboxylase conserved domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 507.0
DYD3_k127_541450_1 cellular manganese ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 359.0
DYD3_k127_541450_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000001042 149.0
DYD3_k127_5420326_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 453.0
DYD3_k127_5420326_1 Cysteine synthase K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 367.0
DYD3_k127_5420326_2 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000371 270.0
DYD3_k127_5420326_3 Putative esterase K07017 - - 0.000000000000000000000000000000000000000000000000000000000002462 214.0
DYD3_k127_5420326_4 Domain of unknown function (DUF4442) - - - 0.00000000000000000000000000000000000002767 149.0
DYD3_k127_5420326_5 Transcriptional regulator - - - 0.00000000000000000000000008269 117.0
DYD3_k127_5420326_6 - - - - 0.000000000000000000000004235 108.0
DYD3_k127_5420326_7 - - - - 0.0000000000000000000000387 104.0
DYD3_k127_5429134_0 COG1668 ABC-type Na efflux pump, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 306.0
DYD3_k127_5429134_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000002336 188.0
DYD3_k127_5429134_2 ABC transporter K01990 - - 0.00000000000000000000000000000438 123.0
DYD3_k127_5435306_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008207 288.0
DYD3_k127_5435306_1 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006971 280.0
DYD3_k127_5435306_2 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009627 304.0
DYD3_k127_5435306_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000008209 231.0
DYD3_k127_5435306_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.000000000000000000000000000000000000001104 158.0
DYD3_k127_5435306_5 Thioredoxin-like domain K03671 - - 0.00000000000000000000000000000000000004451 145.0
DYD3_k127_5435306_6 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division K20543 - - 0.000000000000000000000000000000001018 149.0
DYD3_k127_5442099_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 381.0
DYD3_k127_5442099_1 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 317.0
DYD3_k127_5442099_2 CMP dCMP deaminase - - - 0.000000000000000000000000000000000000000000000000001357 188.0
DYD3_k127_5442099_3 DinB family - - - 0.0000000000000000000000000000000000001907 146.0
DYD3_k127_5452448_0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007117 535.0
DYD3_k127_5452448_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 449.0
DYD3_k127_5452448_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006682 357.0
DYD3_k127_5452771_0 peptidyl-tyrosine sulfation - - - 3.216e-255 806.0
DYD3_k127_5452771_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000834 259.0
DYD3_k127_5466934_0 glutamine synthetase K01915 - 6.3.1.2 1.986e-265 835.0
DYD3_k127_5466934_1 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor - - - 0.0000000000000000000000000000000000000000001273 176.0
DYD3_k127_5466934_2 GAF domain - - - 0.000000000000000000000000000000009161 142.0
DYD3_k127_5466934_3 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000001475 121.0
DYD3_k127_5468679_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 411.0
DYD3_k127_5468679_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 317.0
DYD3_k127_5468679_2 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 310.0
DYD3_k127_5489188_0 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005144 335.0
DYD3_k127_5489188_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002077 277.0
DYD3_k127_5489188_2 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.00000000000000000000000000009757 121.0
DYD3_k127_5498661_0 Protein export membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 506.0
DYD3_k127_5498661_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 308.0
DYD3_k127_5498661_2 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006341 282.0
DYD3_k127_5498661_3 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000001636 240.0
DYD3_k127_555059_0 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 500.0
DYD3_k127_555059_1 - - - - 0.0000000000000000000000000000000000000000000000002824 187.0
DYD3_k127_555059_2 Pyridine nucleotide-disulphide oxidoreductase K05297 - 1.18.1.1 0.0000000000000000000000000000003445 135.0
DYD3_k127_555059_3 - - - - 0.000000000000000001281 87.0
DYD3_k127_555152_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000472 306.0
DYD3_k127_555152_1 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000001845 227.0
DYD3_k127_555152_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000007741 57.0
DYD3_k127_555613_0 Beta-eliminating lyase K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005311 372.0
DYD3_k127_555613_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008609 346.0
DYD3_k127_555613_2 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000001263 218.0
DYD3_k127_555613_3 Copper binding proteins, plastocyanin/azurin family K02638 - - 0.00000000000000000000000000000000001101 140.0
DYD3_k127_555613_4 phosphatidate phosphatase activity K00901,K01096,K19302 - 2.7.1.107,3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.0000000000000000000000000000007777 134.0
DYD3_k127_5567885_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1137.0
DYD3_k127_5567885_1 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007236 572.0
DYD3_k127_5567885_2 Bacterial Ig-like domain 2 - - - 0.00000001455 66.0
DYD3_k127_557890_0 Cytochrome c K07243 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000535 297.0
DYD3_k127_557890_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000006338 224.0
DYD3_k127_557890_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000008971 147.0
DYD3_k127_5585114_0 antiporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 461.0
DYD3_k127_5585114_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 371.0
DYD3_k127_5585114_2 Phosphoesterase family - - - 0.0000000000004752 73.0
DYD3_k127_5611340_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 508.0
DYD3_k127_5611340_1 DinB family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001238 245.0
DYD3_k127_5611340_2 Peptidase family M50 K06402 - - 0.00000000007303 63.0
DYD3_k127_5611340_3 PIN domain - - - 0.00000374 53.0
DYD3_k127_5611400_0 protein conserved in cyanobacteria - - - 0.000000000000000000000000000000000000002313 154.0
DYD3_k127_5611400_1 protein conserved in cyanobacteria - - - 0.00000000006575 68.0
DYD3_k127_5611400_2 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000002577 61.0
DYD3_k127_5634640_0 Beta-glucosidase K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008221 495.0
DYD3_k127_5634640_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01190 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000001667 208.0
DYD3_k127_5641305_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 582.0
DYD3_k127_5641305_1 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000232 302.0
DYD3_k127_5641305_2 - - - - 0.00000000000000000000000000002271 128.0
DYD3_k127_5641305_3 Cytochrome C biogenesis protein - - - 0.000000000000001396 85.0
DYD3_k127_5641305_4 Protein of unknown function (DUF4876) - - - 0.00000000000000145 89.0
DYD3_k127_5641305_5 Cytochrome C biogenesis protein - - - 0.000000000000007718 83.0
DYD3_k127_5641305_6 Protein of unknown function (DUF4876) - - - 0.0000000000003018 82.0
DYD3_k127_5641305_7 Putative adhesin - - - 0.000000000141 66.0
DYD3_k127_5641305_8 TonB dependent receptor K02014 - - 0.00000004219 60.0
DYD3_k127_5643928_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 565.0
DYD3_k127_5643928_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 492.0
DYD3_k127_5643928_2 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 303.0
DYD3_k127_5643928_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000002741 251.0
DYD3_k127_5643928_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000002867 233.0
DYD3_k127_5643928_5 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019438,GO:0019632,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000005831 104.0
DYD3_k127_56520_0 Carboxyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 339.0
DYD3_k127_56520_1 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000002538 222.0
DYD3_k127_56520_2 translation release factor activity K03265 GO:0001666,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0016020,GO:0030312,GO:0036293,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944 - 0.000000000000000000000000000000000000000000000001512 188.0
DYD3_k127_56520_3 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.000000000000000000000000000000000004237 137.0
DYD3_k127_5689440_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 456.0
DYD3_k127_5689440_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000001722 224.0
DYD3_k127_5690148_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 490.0
DYD3_k127_5690148_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007222 276.0
DYD3_k127_5690148_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000007261 250.0
DYD3_k127_5690148_3 HNH nucleases - - - 0.00000000000000000000000003161 109.0
DYD3_k127_5690148_4 - - - - 0.00000000000000003543 90.0
DYD3_k127_5719118_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 404.0
DYD3_k127_5719118_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000001215 192.0
DYD3_k127_5719118_2 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000001784 141.0
DYD3_k127_5725615_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004374 354.0
DYD3_k127_5725615_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 282.0
DYD3_k127_5725615_2 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000001367 224.0
DYD3_k127_5725615_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000007788 180.0
DYD3_k127_5725615_4 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000361 112.0
DYD3_k127_5730112_0 Rhodanese Homology Domain K01069,K03797 - 3.1.2.6,3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000007486 264.0
DYD3_k127_5730112_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001805 254.0
DYD3_k127_5730112_2 gluconolactonase activity K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000002513 216.0
DYD3_k127_5730112_3 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000006068 198.0
DYD3_k127_5730112_4 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0003504 43.0
DYD3_k127_5730561_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 505.0
DYD3_k127_5730561_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 423.0
DYD3_k127_5730561_2 NDK K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000004183 181.0
DYD3_k127_5730561_3 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000000306 102.0
DYD3_k127_574774_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 515.0
DYD3_k127_574774_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006526 320.0
DYD3_k127_574774_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001752 286.0
DYD3_k127_574774_3 Amidase K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000003681 240.0
DYD3_k127_574774_4 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000003699 210.0
DYD3_k127_574774_5 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000002399 69.0
DYD3_k127_5816896_0 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004618 273.0
DYD3_k127_5816896_1 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001305 261.0
DYD3_k127_5816896_2 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000001526 209.0
DYD3_k127_5816896_3 NUDIX domain - - - 0.0000000000000000000000698 103.0
DYD3_k127_5826838_0 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006986 534.0
DYD3_k127_5826838_1 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 424.0
DYD3_k127_5826838_2 TIGRFAM geranylgeranyl reductase - - - 0.000000000008917 74.0
DYD3_k127_5843006_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000009641 54.0
DYD3_k127_5865966_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 526.0
DYD3_k127_5865966_1 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007109 336.0
DYD3_k127_5865966_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000001515 228.0
DYD3_k127_5865966_3 Oxygen tolerance - - - 0.000001038 58.0
DYD3_k127_5873224_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 518.0
DYD3_k127_5873224_1 OST-HTH/LOTUS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 420.0
DYD3_k127_5873224_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007106 407.0
DYD3_k127_5873224_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000005613 229.0
DYD3_k127_5873224_4 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.00000000000000000000000000000000000000001564 163.0
DYD3_k127_5890924_0 - - - - 0.0000000000000000000000000000000000000000000000000000000009527 214.0
DYD3_k127_5890924_1 Squalene--hopene cyclase - - - 0.00000000000000000000000000000000000000000000007894 177.0
DYD3_k127_5890924_2 - - - - 0.0000000000000000000000009893 107.0
DYD3_k127_5890924_3 Phosphoglycerate mutase family - - - 0.000000000000001015 78.0
DYD3_k127_5896048_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.001e-196 623.0
DYD3_k127_5896048_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000000000002339 150.0
DYD3_k127_5896048_2 Outer membrane lipoprotein K05807 - - 0.000000000000000000000000000000001079 137.0
DYD3_k127_5909263_0 Molybdopterin oxidoreductase Fe4S4 domain - - - 8.063e-235 732.0
DYD3_k127_5909263_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006195 587.0
DYD3_k127_5909263_2 DsrE/DsrF-like family - - - 0.00000000000000000000000000000000000000000000000000232 186.0
DYD3_k127_5909263_3 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000001459 74.0
DYD3_k127_5919073_0 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 515.0
DYD3_k127_5949920_0 Peptidase M14, carboxypeptidase A - - - 0.0 1043.0
DYD3_k127_5949920_1 Type I phosphodiesterase / nucleotide pyrophosphatase K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000007528 253.0
DYD3_k127_5949920_2 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000001179 130.0
DYD3_k127_5955988_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.604e-214 679.0
DYD3_k127_5955988_1 IMP dehydrogenase / GMP reductase domain K00088 - 1.1.1.205 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004509 580.0
DYD3_k127_5955988_2 CAAX protease self-immunity K07052 - - 0.000000000005515 75.0
DYD3_k127_5967694_0 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 478.0
DYD3_k127_5967694_1 Phosphoribosyl transferase domain K07101 - - 0.0000000000000000000000000000000000000000000004584 173.0
DYD3_k127_5967694_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000009673 168.0
DYD3_k127_5969648_0 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000008296 171.0
DYD3_k127_5969648_1 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.000000000000000000000000000000000005563 139.0
DYD3_k127_5969648_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000009349 136.0
DYD3_k127_5978729_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 1.696e-289 912.0
DYD3_k127_5978729_1 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000000000000000000000000000000000000003397 196.0
DYD3_k127_5978729_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000006029 197.0
DYD3_k127_5978729_3 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000008546 156.0
DYD3_k127_5978729_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000008609 94.0
DYD3_k127_5978729_5 Cell division initiation protein K04074 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000002512 63.0
DYD3_k127_5981873_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000007608 174.0
DYD3_k127_5981873_1 MFS transporter - - - 0.00000000000000000000000164 107.0
DYD3_k127_5981873_2 Belongs to the 'phage' integrase family - - - 0.0000000000000005669 83.0
DYD3_k127_5981873_3 Belongs to the 'phage' integrase family - - - 0.0000000000001372 77.0
DYD3_k127_5981873_4 DNA integration - - - 0.000000000001322 74.0
DYD3_k127_5981873_5 Helix-turn-helix domain - - - 0.0000002424 55.0
DYD3_k127_5981873_6 2TM domain - - - 0.000003391 56.0
DYD3_k127_5982777_0 nuclear chromosome segregation - - - 3.139e-207 691.0
DYD3_k127_5982777_1 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000002584 130.0
DYD3_k127_5992501_0 PA domain - - - 2.246e-203 642.0
DYD3_k127_5992501_1 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 492.0
DYD3_k127_5992501_2 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 447.0
DYD3_k127_6016574_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 377.0
DYD3_k127_6016574_1 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002429 284.0
DYD3_k127_6016574_2 Polymer-forming cytoskeletal - - - 0.0000000000000000000001438 111.0
DYD3_k127_6016574_3 Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins K07400 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0010467,GO:0015976,GO:0016043,GO:0016226,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0050896,GO:0051186,GO:0051536,GO:0051539,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0097428,GO:0098771,GO:1901564 - 0.00000000000004984 74.0
DYD3_k127_6028109_0 Dienelactone hydrolase family - - - 2.822e-269 848.0
DYD3_k127_6028109_1 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008201 266.0
DYD3_k127_6028109_2 - - - - 0.000000000000000000000000000000000000000000000000000000004902 215.0
DYD3_k127_6042763_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 312.0
DYD3_k127_6110466_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 567.0
DYD3_k127_6110466_1 Sporulation related domain - - - 0.0000000000000001438 93.0
DYD3_k127_6126111_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 326.0
DYD3_k127_6126111_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 302.0
DYD3_k127_6126111_2 Organic Anion Transporter Polypeptide (OATP) family - - - 0.00000000000000000000000000000000000000000000000000003117 208.0
DYD3_k127_6126111_3 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000171 149.0
DYD3_k127_6126111_4 negative regulation of transcription, DNA-templated K21600 - - 0.00000000000000000000000000004476 125.0
DYD3_k127_6134340_0 Membrane-bound dehydrogenase domain protein - - - 2.109e-208 668.0
DYD3_k127_6134340_1 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000004615 191.0
DYD3_k127_6134912_0 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005858 394.0
DYD3_k127_6134912_1 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000007804 171.0
DYD3_k127_6134912_2 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000007482 53.0
DYD3_k127_6159950_0 2-Nitropropane dioxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 599.0
DYD3_k127_6159950_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000005757 184.0
DYD3_k127_6185726_0 Uncharacterized protein family (UPF0051) K09014 - - 4.92e-254 790.0
DYD3_k127_6185726_1 ABC transporter K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 402.0
DYD3_k127_6185726_2 FeS assembly protein SufD K07033,K09015 GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000003093 89.0
DYD3_k127_6185726_3 HTH domain - - - 0.0000000000000001641 83.0
DYD3_k127_6199954_0 PFAM peptidase - - - 0.00000000000000000000000000000000000000005527 164.0
DYD3_k127_6205133_0 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 286.0
DYD3_k127_6205133_1 Biopolymer transport protein ExbD/TolR K03560 - - 0.0000000000000000000000000001601 119.0
DYD3_k127_6205133_2 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000000000000002746 115.0
DYD3_k127_6205133_3 - - - - 0.0000000000000005607 89.0
DYD3_k127_6205133_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000004477 78.0
DYD3_k127_6205133_5 PFAM Amino acid permease K03294 - - 0.000000001432 63.0
DYD3_k127_6206101_0 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 527.0
DYD3_k127_6206101_1 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 371.0
DYD3_k127_6206101_2 PFAM LemA family K03744 - - 0.00000000000000000000000000000000000000000000003775 177.0
DYD3_k127_6206101_3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000002896 158.0
DYD3_k127_6206101_4 EAL domain - - - 0.000000000000000000000000000000000000009804 154.0
DYD3_k127_6206101_5 - - - - 0.000159 53.0
DYD3_k127_6210616_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 4.82e-268 857.0
DYD3_k127_6210616_1 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 598.0
DYD3_k127_6210616_2 PAS domain K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007002 343.0
DYD3_k127_6210616_3 Conserved hypothetical protein (DUF2461) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 287.0
DYD3_k127_6210616_4 HeAt shock protein K04762 GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0033554,GO:0034605,GO:0034641,GO:0043021,GO:0043023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.00000000000000000000000000001002 125.0
DYD3_k127_6210616_5 Cytochrome c K19713 - 1.8.2.2 0.00000000000000000000000001242 111.0
DYD3_k127_6210616_6 Prokaryotic N-terminal methylation motif K02456,K02650,K02655 - - 0.000000000000000000005482 97.0
DYD3_k127_6210616_7 Prokaryotic N-terminal methylation motif K02456,K02650,K02655 - - 0.00000000000000000001641 96.0
DYD3_k127_6233492_0 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 323.0
DYD3_k127_6233492_1 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 289.0
DYD3_k127_6233492_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 289.0
DYD3_k127_6233492_3 Putative zinc- or iron-chelating domain K06940 - - 0.0000000000000000000000000000000000000000000000038 176.0
DYD3_k127_6233492_4 Domain of unknown function (DUF4112) - - - 0.00000000000000000000000004073 114.0
DYD3_k127_6233492_5 Transglycosylase associated protein - - - 0.0000000000000000000000001641 108.0
DYD3_k127_6244336_0 TIGRFAM NiFe hydrogenase maturation protein HypF K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003856 605.0
DYD3_k127_6244336_1 HupF/HypC family K04653 - - 0.000000000000000000000004299 104.0
DYD3_k127_6257327_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 325.0
DYD3_k127_6257327_1 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003554 273.0
DYD3_k127_6257327_2 Ferric uptake regulator family K03711 - - 0.000000000000000000000000000000000000005248 153.0
DYD3_k127_6257327_3 - - - - 0.000000005078 66.0
DYD3_k127_6273002_0 cellulose binding - - - 5.055e-299 941.0
DYD3_k127_6273002_1 amino acid K03294,K13868 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 359.0
DYD3_k127_6273002_2 - - - - 0.0001945 46.0
DYD3_k127_6309955_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 586.0
DYD3_k127_6309955_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000004339 212.0
DYD3_k127_6309955_2 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000007508 120.0
DYD3_k127_6309955_3 diguanylate cyclase - - - 0.000000008204 57.0
DYD3_k127_6336187_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 467.0
DYD3_k127_6336187_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 363.0
DYD3_k127_6336187_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.0000000000000000000000000000000000000000002856 162.0
DYD3_k127_6336187_3 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000002068 139.0
DYD3_k127_6336187_4 Preprotein translocase SecG subunit K03075 - - 0.0000000005909 65.0
DYD3_k127_6366883_0 domain, Protein - - - 0.000000000000000000000000000000001131 148.0
DYD3_k127_6381918_0 4Fe-4S single cluster domain K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007938 281.0
DYD3_k127_6381918_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000003471 103.0
DYD3_k127_6381918_2 Spore maturation protein cgeB K06320 - - 0.000000000000000003969 90.0
DYD3_k127_6441265_0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 398.0
DYD3_k127_6441265_1 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 305.0
DYD3_k127_6441265_2 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000002312 212.0
DYD3_k127_6441265_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000004288 156.0
DYD3_k127_6441265_4 - - - - 0.00000000000000005824 83.0
DYD3_k127_6450123_0 Tetratricopeptide repeat K08884,K12132 - 2.7.11.1 4.884e-285 903.0
DYD3_k127_6450123_1 ABC transporter K06158 - - 4.862e-209 672.0
DYD3_k127_6450123_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000001144 188.0
DYD3_k127_6450123_3 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000001191 174.0
DYD3_k127_6450123_4 - - - - 0.00000000000000000000000000000000004611 143.0
DYD3_k127_6450123_5 Peptidase family M23 - - - 0.0000000000000000000000114 115.0
DYD3_k127_6454272_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 513.0
DYD3_k127_6454272_1 3-oxoacyl-[acyl-carrier-protein] synthase activity K09458,K18473 - 2.3.1.179,2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000003132 235.0
DYD3_k127_646756_0 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 3.644e-229 722.0
DYD3_k127_646756_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 572.0
DYD3_k127_646756_2 TIGRFAM competence protein ComEA helix-hairpin-helix repeat K02237 - - 0.00000000000000000004227 97.0
DYD3_k127_6472866_0 Sortilin, neurotensin receptor 3, - - - 0.0 1418.0
DYD3_k127_6472866_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1024.0
DYD3_k127_6472866_10 - - - - 0.0000000001229 67.0
DYD3_k127_6472866_11 Phospholipid methyltransferase - - - 0.0000478 49.0
DYD3_k127_6472866_2 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 5.802e-204 655.0
DYD3_k127_6472866_3 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 442.0
DYD3_k127_6472866_4 Multicopper oxidase K00368,K22348 - 1.16.3.3,1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009135 407.0
DYD3_k127_6472866_5 xanthine dehydrogenase activity K03519,K19818 - 1.2.5.3,1.5.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000005204 269.0
DYD3_k127_6472866_6 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000009772 247.0
DYD3_k127_6472866_7 PFAM carbon monoxide dehydrogenase subunit G K09386 - - 0.00000000000000000000000000000002334 137.0
DYD3_k127_6472866_8 beta-lactamase K01286 - 3.4.16.4 0.0000000000000000000000005865 107.0
DYD3_k127_6472866_9 PFAM iron dependent repressor K03709 - - 0.000000000004491 70.0
DYD3_k127_6486244_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 316.0
DYD3_k127_6486244_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000003583 206.0
DYD3_k127_6486244_2 COG2172 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.0000000000000000000213 94.0
DYD3_k127_6499034_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 334.0
DYD3_k127_6499034_1 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000006157 138.0
DYD3_k127_6500766_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004873 507.0
DYD3_k127_6500766_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 353.0
DYD3_k127_6500766_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000007213 241.0
DYD3_k127_6500766_3 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000001176 199.0
DYD3_k127_6500766_4 Thioesterase superfamily - - - 0.0000000000000000000000000000000000008674 144.0
DYD3_k127_6500766_5 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000009285 106.0
DYD3_k127_6500766_6 Uncharacterized conserved protein (DUF2203) - - - 0.000000000000000000001692 99.0
DYD3_k127_6500766_7 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.00000000000000009162 92.0
DYD3_k127_6500766_8 lyase activity - - - 0.00000001363 67.0
DYD3_k127_6503863_0 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 2.991e-240 753.0
DYD3_k127_6503863_1 acyl-CoA dehydrogenase activity K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 358.0
DYD3_k127_6503863_2 translation initiation inhibitor, yjgF family - - - 0.00000000000000000000000000000000000000000000000007595 183.0
DYD3_k127_6503863_3 Transcriptional regulator PadR-like family - - - 0.0000000000000000000000000000000001722 135.0
DYD3_k127_6539669_0 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 580.0
DYD3_k127_6539669_1 Transport and Golgi organisation 2 - - - 0.00000000000000000000001952 107.0
DYD3_k127_6539669_2 - - - - 0.000000000000000000003563 100.0
DYD3_k127_6539669_3 oxidation-reduction process - - - 0.0000000000001222 81.0
DYD3_k127_6553128_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 372.0
DYD3_k127_6553128_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 314.0
DYD3_k127_6553128_2 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K01924,K02563 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.227,6.3.2.8 0.00000000000000001635 85.0
DYD3_k127_6553128_3 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.00000005193 63.0
DYD3_k127_655898_0 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000003887 118.0
DYD3_k127_655898_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.00000003268 63.0
DYD3_k127_6564325_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 406.0
DYD3_k127_6564325_1 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000214 242.0
DYD3_k127_6564325_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K00982,K03564 - 1.11.1.15,2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000006808 210.0
DYD3_k127_6564325_3 - - - - 0.0000000000000000000000000000000000001539 149.0
DYD3_k127_6564325_4 curli production assembly transport component CsgG K04087 - - 0.000000000000001804 85.0
DYD3_k127_6564325_5 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000001994 72.0
DYD3_k127_6572230_0 GIY-YIG type nucleases (URI domain) K03703 - - 0.00000000000000000000000000000002014 132.0
DYD3_k127_6572230_1 AAA ATPase domain - - - 0.000000001483 69.0
DYD3_k127_6595100_0 nitrite reductase K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006512 486.0
DYD3_k127_6595100_1 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001205 255.0
DYD3_k127_6621459_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 347.0
DYD3_k127_6621459_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000003406 222.0
DYD3_k127_6625274_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 434.0
DYD3_k127_6625274_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 379.0
DYD3_k127_6625274_2 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 336.0
DYD3_k127_6625274_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 306.0
DYD3_k127_6625274_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000002828 84.0
DYD3_k127_6625274_5 - - - - 0.0000003478 55.0
DYD3_k127_6625274_6 Protein of unknown function (DUF3187) - - - 0.00001121 57.0
DYD3_k127_6649906_0 ASPIC UnbV domain protein - - - 8.272e-212 674.0
DYD3_k127_6649906_1 - - - - 0.00000000000000000000000000000000000000000000000001749 189.0
DYD3_k127_6664128_0 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 321.0
DYD3_k127_6664128_1 Aerotolerance regulator N-terminal - - - 0.000000000000000000000000000000000000000000000000000165 203.0
DYD3_k127_6664128_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000543 176.0
DYD3_k127_666664_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 514.0
DYD3_k127_666664_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 439.0
DYD3_k127_666664_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000001507 151.0
DYD3_k127_666664_3 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000004247 154.0
DYD3_k127_666664_4 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.00000000000000000000000000001707 119.0
DYD3_k127_6676060_0 Protein of unknown function (DUF541) K09807 - - 0.0000000000000000000000008204 113.0
DYD3_k127_6677061_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000004932 171.0
DYD3_k127_6677061_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000000001939 131.0
DYD3_k127_6677061_2 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.00001751 57.0
DYD3_k127_6690946_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 2.758e-195 621.0
DYD3_k127_6690946_1 cytochrome c oxidase (Subunit II) - - - 0.00000000000000000000000000000000000000000000000000001877 194.0
DYD3_k127_6690946_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000003711 57.0
DYD3_k127_6690946_3 - - - - 0.0001084 52.0
DYD3_k127_6696934_0 LytB protein K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 460.0
DYD3_k127_6696934_1 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 333.0
DYD3_k127_6696934_2 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 298.0
DYD3_k127_6696934_3 transcriptional regulator K21405 - - 0.000000628 56.0
DYD3_k127_6696934_4 Protein conserved in bacteria - - - 0.0004358 48.0
DYD3_k127_6712701_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 315.0
DYD3_k127_6716621_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 1.614e-212 665.0
DYD3_k127_6716621_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K15856 - 1.1.1.281 0.000000000000000000000000000000000000000000000000000006737 199.0
DYD3_k127_6723654_0 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 350.0
DYD3_k127_6726834_0 ABC 3 transport family K02075,K09816 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001317 261.0
DYD3_k127_6726834_1 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.00000000000000000000000000000000002762 139.0
DYD3_k127_6730779_0 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 503.0
DYD3_k127_6730779_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 315.0
DYD3_k127_6730779_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000001124 231.0
DYD3_k127_6730779_3 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000007052 222.0
DYD3_k127_6745961_0 Ferritin-like - - - 0.000000000000000000000000000000000000000000000000002938 196.0
DYD3_k127_6745961_1 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.0000000000000000000000002603 115.0
DYD3_k127_6745961_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000001093 98.0
DYD3_k127_6745961_3 Pfam:DUF385 - - - 0.000000006119 60.0
DYD3_k127_6773892_0 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007446 473.0
DYD3_k127_6773892_1 Flavin-binding monooxygenase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 462.0
DYD3_k127_6773892_2 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 383.0
DYD3_k127_6773892_3 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001776 290.0
DYD3_k127_6773892_4 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000006915 216.0
DYD3_k127_6773892_5 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000002342 126.0
DYD3_k127_6773892_6 Zincin-like metallopeptidase - - - 0.00000000000000000000000008047 109.0
DYD3_k127_6773892_7 chaperone-mediated protein folding K02660 - - 0.000000000000000005708 98.0
DYD3_k127_6791918_0 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 474.0
DYD3_k127_6791918_1 Glycosyltransferase like family 2 K16870 - 2.4.1.289 0.0000000000000000000000009386 117.0
DYD3_k127_6791918_2 Oxidoreductase family, NAD-binding Rossmann fold K13020 - 1.1.1.335 0.0000000000000000001603 88.0
DYD3_k127_6801143_0 PFAM Beta-lactamase K18988 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 413.0
DYD3_k127_6801143_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 332.0
DYD3_k127_6801143_2 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000009748 239.0
DYD3_k127_6801143_3 Uncharacterized ACR, COG1993 K06199,K09137 - - 0.00000000000000000000000000000000000000000000000001356 183.0
DYD3_k127_6801143_4 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000000000734 139.0
DYD3_k127_6806949_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 518.0
DYD3_k127_6806949_1 Peptidase family M23 K21472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 311.0
DYD3_k127_6806949_2 heme binding - - - 0.00000000000000000000000000000000000000000000000000000000000004122 226.0
DYD3_k127_6806949_3 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000001 139.0
DYD3_k127_6806949_4 - - - - 0.00000000000000000000000000344 117.0
DYD3_k127_6806949_5 YceI-like domain - - - 0.0000000000000001657 83.0
DYD3_k127_6812528_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 301.0
DYD3_k127_6812528_1 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 294.0
DYD3_k127_6812528_2 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000009416 178.0
DYD3_k127_6817710_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 431.0
DYD3_k127_6817710_1 Copper chaperone PCu(A)C K03619,K07152,K09796 GO:0003674,GO:0005048,GO:0005488,GO:0033218,GO:0042277 - 0.0000000000000000000000000000000000000000000001221 176.0
DYD3_k127_6817710_2 CopC domain K07156 - - 0.00000000004906 69.0
DYD3_k127_6825541_0 Thymidine kinase K00857 - 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005492 268.0
DYD3_k127_6825541_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.000000000000000000000000000000000000000000000000003917 186.0
DYD3_k127_6825541_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000001999 181.0
DYD3_k127_6825541_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000095 168.0
DYD3_k127_6855628_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003736 256.0
DYD3_k127_6855628_1 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000001723 186.0
DYD3_k127_6855628_2 peptidyl-tyrosine sulfation - - - 0.0000000006919 72.0
DYD3_k127_687507_0 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 333.0
DYD3_k127_687507_1 - - - - 0.00054 51.0
DYD3_k127_6894437_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 1.77e-236 754.0
DYD3_k127_6894437_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 460.0
DYD3_k127_6894437_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000002177 222.0
DYD3_k127_6894892_0 Ftsk_gamma K03466 - - 1.976e-196 629.0
DYD3_k127_6898747_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 610.0
DYD3_k127_6898747_1 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.000000000000000000000000000000000000000000000001559 179.0
DYD3_k127_6922271_0 PFAM elongation factor G domain protein K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 546.0
DYD3_k127_6922271_1 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000005329 226.0
DYD3_k127_6922271_2 hydroperoxide reductase activity - - - 0.00000000000001376 77.0
DYD3_k127_6922271_3 PA26 p53-induced protein (sestrin) - - - 0.0000000008166 61.0
DYD3_k127_6926840_0 Phosphoesterase family K01114 - 3.1.4.3 0.00000000000000000000000000000000000000000000000000002549 199.0
DYD3_k127_6926840_1 Phosphoesterase family K01114 - 3.1.4.3 0.0000000000000000000000000000000000000000003012 166.0
DYD3_k127_6926840_2 CarboxypepD_reg-like domain K02014 - - 0.000000000000000000000007623 108.0
DYD3_k127_6926840_3 SMART serine threonine protein kinase - - - 0.000000005532 59.0
DYD3_k127_694746_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001899 589.0
DYD3_k127_694746_1 Cupin domain - - - 0.00000000000000006382 83.0
DYD3_k127_6948847_0 UDP binding domain K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 531.0
DYD3_k127_6948847_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007949 436.0
DYD3_k127_6948847_2 Hexapeptide repeat of succinyl-transferase K13018 - 2.3.1.201 0.00000000000000000000000000000000000000000000000000000576 192.0
DYD3_k127_6949794_0 Tfp pilus assembly protein FimV K00694 - 2.4.1.12 0.000000000000000000000000000000000000000000001128 186.0
DYD3_k127_6949794_1 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.00000000000000000000000003801 111.0
DYD3_k127_6949794_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000006106 112.0
DYD3_k127_6958073_0 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 456.0
DYD3_k127_6958073_1 amidohydrolase K03392 - 4.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 443.0
DYD3_k127_6958073_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002951 279.0
DYD3_k127_6958073_3 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000002141 187.0
DYD3_k127_6958073_4 Acetamidase/Formamidase family - - - 0.00000000000000000000000000000000000004988 144.0
DYD3_k127_6958073_5 EamA-like transporter family - - - 0.000000000006914 69.0
DYD3_k127_6978575_0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009124 505.0
DYD3_k127_6978575_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 494.0
DYD3_k127_6978575_2 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 413.0
DYD3_k127_6978575_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000563 297.0
DYD3_k127_6978575_4 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000001474 212.0
DYD3_k127_6978575_5 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000003239 199.0
DYD3_k127_6978575_6 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000239 75.0
DYD3_k127_7002617_0 peptidase - - - 2.294e-218 700.0
DYD3_k127_7002617_1 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 457.0
DYD3_k127_7016681_0 FeoA - - - 2.717e-290 909.0
DYD3_k127_7016681_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 371.0
DYD3_k127_7016681_2 iron dependent repressor K03709 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001164 269.0
DYD3_k127_7016681_3 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.000000000000000000000000000000000000000000000007357 185.0
DYD3_k127_7016681_4 NUDIX domain - - - 0.00000000000000000000000000000000131 141.0
DYD3_k127_7016681_5 DNA-binding transcription factor activity K21903 - - 0.00000000000000000000000000000004195 129.0
DYD3_k127_7026156_0 lysine 2,3-aminomutase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 590.0
DYD3_k127_7026156_1 succinyl-diaminopimelate desuccinylase activity K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 529.0
DYD3_k127_7026156_2 - - - - 0.00000000000000000000006292 107.0
DYD3_k127_7060604_0 PFAM peptidase U62 modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000001059 194.0
DYD3_k127_7060604_1 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000004481 120.0
DYD3_k127_7060604_2 4-vinyl reductase, 4VR - - - 0.000000000000000008728 91.0
DYD3_k127_7060604_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000005945 49.0
DYD3_k127_7069109_0 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 348.0
DYD3_k127_7069109_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 325.0
DYD3_k127_7069109_2 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004738 250.0
DYD3_k127_7069109_3 - - - - 0.0000000000000000000000000000009513 131.0
DYD3_k127_7069981_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 550.0
DYD3_k127_7069981_1 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 492.0
DYD3_k127_7069981_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 392.0
DYD3_k127_7069981_3 Amidohydrolase family K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 302.0
DYD3_k127_7069981_4 SAM (And some other nucleotide) binding motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008824 248.0
DYD3_k127_7071920_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006442 477.0
DYD3_k127_7071920_1 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000004394 53.0
DYD3_k127_7078320_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.419e-198 640.0
DYD3_k127_7078320_1 MMPL family - - - 0.000000000000000000000000000000000001044 142.0
DYD3_k127_7084320_0 aconitate hydratase K01681 - 4.2.1.3 4.712e-266 839.0
DYD3_k127_7084320_1 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000001727 214.0
DYD3_k127_7084320_2 Protein of unknown function (DUF971) K03593 - - 0.0000000000000000000000003116 108.0
DYD3_k127_7118761_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 287.0
DYD3_k127_7118761_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000007351 154.0
DYD3_k127_7118761_2 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000006782 114.0
DYD3_k127_7120357_0 CBS domain containing protein K03699 - - 0.00000000000000000000000000000000000000000000001166 186.0
DYD3_k127_7120357_1 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000004536 146.0
DYD3_k127_7120357_2 COG1253 Hemolysins and related proteins containing CBS domains - - - 0.0000000000000000000000000000000001485 144.0
DYD3_k127_7120357_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000005457 113.0
DYD3_k127_7122771_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 1.376e-288 900.0
DYD3_k127_7122771_1 Catalyzes the formation of 2-oxoglutarate from isocitrate K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 410.0
DYD3_k127_7122771_2 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 310.0
DYD3_k127_7122771_3 Penicillin-binding protein 1A K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006952 291.0
DYD3_k127_7122771_4 Glycine zipper - - - 0.00000000000000000000000000000000000000000000000000000000000376 215.0
DYD3_k127_7122771_5 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000003117 195.0
DYD3_k127_7122771_6 - - - - 0.000000000000000000000000000006267 137.0
DYD3_k127_7122771_7 Transglycosylase associated protein - - - 0.0000000000000000006123 94.0
DYD3_k127_7122771_8 - - - - 0.00001815 49.0
DYD3_k127_7123415_0 Zinc carboxypeptidase - - - 1.147e-235 748.0
DYD3_k127_7123415_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009169 474.0
DYD3_k127_7123415_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000004253 96.0
DYD3_k127_7130922_0 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.0 1011.0
DYD3_k127_7130922_1 Belongs to the thiolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 548.0
DYD3_k127_7130922_2 Bacterial transferase hexapeptide (six repeats) K02617 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 310.0
DYD3_k127_7130922_3 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000001403 268.0
DYD3_k127_7130922_4 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000002718 177.0
DYD3_k127_7181060_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 534.0
DYD3_k127_7181060_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 500.0
DYD3_k127_7181060_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 303.0
DYD3_k127_7181060_3 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003029 298.0
DYD3_k127_7181060_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000001382 197.0
DYD3_k127_7181060_5 Domain of unknown function (DUF4198) - - - 0.00000000000000000000000000000000000000000000000004874 191.0
DYD3_k127_741065_0 siderophore transport K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 591.0
DYD3_k127_741065_1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000001632 192.0
DYD3_k127_74473_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 2.033e-318 985.0
DYD3_k127_74473_1 TIGRFAM phosphate ABC transporter, phosphate-binding protein K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 383.0
DYD3_k127_74473_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 333.0
DYD3_k127_74473_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008533 331.0
DYD3_k127_74473_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 312.0
DYD3_k127_74473_5 HAMP domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 296.0
DYD3_k127_74473_6 Phosphate transport system permease protein PstA K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001097 286.0
DYD3_k127_74473_7 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.000000000000000000000000000000000000000000000000000000001991 207.0
DYD3_k127_746163_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 533.0
DYD3_k127_746163_1 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008833 300.0
DYD3_k127_746163_2 ECF sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008528 268.0
DYD3_k127_746163_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000002596 265.0
DYD3_k127_746163_4 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000001666 68.0
DYD3_k127_746163_5 - - - - 0.0000000000641 72.0
DYD3_k127_752438_0 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007704 574.0
DYD3_k127_752438_1 antibiotic catabolic process K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006941 417.0
DYD3_k127_752438_2 aminotransferase K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000005078 214.0
DYD3_k127_752438_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.0000000000000000000000000000000000000000000002702 171.0
DYD3_k127_752438_4 Imidazolonepropionase and related - - - 0.0000000000000000000000000933 115.0
DYD3_k127_752438_5 NHL repeat - - - 0.00001676 57.0
DYD3_k127_754654_0 Atp-dependent helicase - - - 6.629e-300 942.0
DYD3_k127_754654_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 316.0
DYD3_k127_754654_2 Belongs to the peptidase S1B family - - - 0.000000000000000000000000000000002437 141.0
DYD3_k127_767392_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 513.0
DYD3_k127_767392_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 404.0
DYD3_k127_767392_2 - - - - 0.000000000000000000000000000000525 124.0
DYD3_k127_767392_3 MacB-like periplasmic core domain K09808 - - 0.0000000000000000000000000005645 118.0
DYD3_k127_774717_0 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000846 458.0
DYD3_k127_774717_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000006237 72.0
DYD3_k127_774717_2 - - - - 0.0002708 49.0
DYD3_k127_789318_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007977 475.0
DYD3_k127_789318_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 435.0
DYD3_k127_789318_2 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 335.0
DYD3_k127_789318_3 Metallopeptidase family M24 K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 327.0
DYD3_k127_789318_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000004898 234.0
DYD3_k127_789318_5 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000001311 237.0
DYD3_k127_789318_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000414 170.0
DYD3_k127_789318_7 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000005886 156.0
DYD3_k127_789318_8 Ribosomal protein L30p/L7e K02907 - - 0.0000000000000001616 86.0
DYD3_k127_798573_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 2.359e-206 652.0
DYD3_k127_798573_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 552.0
DYD3_k127_798573_2 PFAM Histone deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006997 256.0
DYD3_k127_798573_3 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000000000000218 194.0
DYD3_k127_798573_4 - - - - 0.0000000000000004638 84.0
DYD3_k127_798573_5 - - - - 0.0000006437 54.0
DYD3_k127_821817_0 TIGRFAM isocitrate dehydrogenase, NADP-dependent, prokaryotic type K00031 - 1.1.1.42 5.664e-203 642.0
DYD3_k127_821817_1 Sodium/hydrogen exchanger family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006714 557.0
DYD3_k127_821817_2 VWA domain containing CoxE-like protein K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 371.0
DYD3_k127_821817_3 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 301.0
DYD3_k127_821817_4 PFAM sodium calcium exchanger membrane region K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002284 265.0
DYD3_k127_821817_5 SET domain K07117 - - 0.0000000000000000000000000000000000000008634 155.0
DYD3_k127_821817_6 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000002383 138.0
DYD3_k127_821817_7 - - - - 0.0000000000000000000006581 100.0
DYD3_k127_835059_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 310.0
DYD3_k127_835059_1 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 303.0
DYD3_k127_835059_2 Aerotolerance regulator N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000002271 250.0
DYD3_k127_835059_3 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000001223 219.0
DYD3_k127_835059_4 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000002441 215.0
DYD3_k127_842706_0 Sortilin, neurotensin receptor 3, - - - 0.0 1216.0
DYD3_k127_842706_1 Conserved TM helix - - - 0.00000000000000000000000000000000000000001866 161.0
DYD3_k127_842706_2 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000006276 92.0
DYD3_k127_84480_0 Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 428.0
DYD3_k127_84480_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001665 260.0
DYD3_k127_84480_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000004394 239.0
DYD3_k127_84480_3 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000005837 135.0
DYD3_k127_862697_0 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 477.0
DYD3_k127_862697_1 - - - - 0.000000000000000000000000000000000000002107 154.0
DYD3_k127_862697_2 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.000000000000000000000000000006041 126.0
DYD3_k127_913870_0 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003406 276.0
DYD3_k127_913870_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000000000000008019 176.0
DYD3_k127_917702_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 392.0
DYD3_k127_917702_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000001713 186.0
DYD3_k127_917702_2 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000001008 166.0
DYD3_k127_917702_3 Sporulation related domain - - - 0.000000000005057 77.0
DYD3_k127_922551_0 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544 565.0
DYD3_k127_922551_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - - - 0.0000000000000000000000000000000000000001086 157.0
DYD3_k127_922551_2 Transcription elongation factor, N-terminal K03624 - - 0.0000000000000000000000000000000000000003575 154.0
DYD3_k127_922551_3 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000666 87.0
DYD3_k127_922551_4 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000003279 70.0
DYD3_k127_936287_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 411.0
DYD3_k127_936287_1 PFAM FMN-dependent dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 386.0
DYD3_k127_936287_2 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 332.0
DYD3_k127_936287_3 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000003871 220.0
DYD3_k127_94647_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 370.0
DYD3_k127_94647_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 355.0
DYD3_k127_94647_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002204 273.0
DYD3_k127_969623_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 431.0
DYD3_k127_969623_1 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 314.0
DYD3_k127_969623_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 298.0
DYD3_k127_969623_3 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000001359 205.0
DYD3_k127_969623_4 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000000000007297 195.0
DYD3_k127_969623_5 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000008605 200.0
DYD3_k127_969623_6 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000002388 175.0
DYD3_k127_969623_7 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000003079 138.0
DYD3_k127_969623_8 Ribosomal protein L36 K02919 - - 0.00000000000001759 73.0
DYD3_k127_999081_0 Surface antigen K07277 - - 4.333e-204 664.0
DYD3_k127_999081_1 Clp amino terminal domain, pathogenicity island component K03696 - - 0.00000000000000000000007935 99.0
DYD3_k127_999081_2 Outer membrane protein (OmpH-like) K06142 - - 0.00003168 53.0