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Overview

ID MAG00988
Name DYD3_bin.68
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Palauibacterales
Family Palauibacteraceae
Genus
Species
Assembly information
Completeness (%) 69.23
Contamination (%) 1.03
GC content (%) 74.0
N50 (bp) 3,713
Genome size (bp) 1,974,131

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1851

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_10137_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 323.0
DYD3_k127_10137_1 Methyltransferase K08316 - 2.1.1.171 0.0000000000000000005912 101.0
DYD3_k127_1014793_0 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457 454.0
DYD3_k127_1014793_1 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 389.0
DYD3_k127_1014793_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005365 371.0
DYD3_k127_1014793_3 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 342.0
DYD3_k127_1014793_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.00000000000000000000000000000000000000000002196 175.0
DYD3_k127_1014793_5 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000002635 142.0
DYD3_k127_1014793_7 Nitroreductase family - - - 0.0000000000000000000003624 111.0
DYD3_k127_1014793_8 SNARE associated Golgi protein - - - 0.000000000000000000004075 102.0
DYD3_k127_1027128_0 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000727 356.0
DYD3_k127_1027128_1 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000007582 179.0
DYD3_k127_1072367_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.693e-220 703.0
DYD3_k127_1072367_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000065 605.0
DYD3_k127_1072367_2 Belongs to the GTP cyclohydrolase I type 2 NIF3 family K22391 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0042802,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0050896 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000006909 245.0
DYD3_k127_1072367_3 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000008595 222.0
DYD3_k127_1072367_4 Permease MlaE K02066 - - 0.000000000000000000000000000000000001142 152.0
DYD3_k127_1072367_5 MlaD protein K02067 - - 0.00000000000000003474 95.0
DYD3_k127_1086349_0 oxidoreductase activity K05886,K15373,K16066 - 1.1.1.276,1.1.1.313,1.1.1.381 0.0000000000000000000000000000000000000000000000000000000000000000000001127 243.0
DYD3_k127_1086349_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000006744 239.0
DYD3_k127_1086349_2 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000004298 194.0
DYD3_k127_1086349_3 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000001453 162.0
DYD3_k127_1086349_4 Nitroreductase family - - - 0.0000000000000000000000000001161 115.0
DYD3_k127_1086349_5 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.000000000000000000000002269 106.0
DYD3_k127_1086349_6 positive regulation of growth K19687 GO:0008150,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0065007 - 0.0000002246 61.0
DYD3_k127_1114500_0 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 GO:0003674,GO:0003824,GO:0004422,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006188,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0043094,GO:0043101,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046040,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0052657,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.8 0.0000000000000000000000000000000000000000000000000000006707 205.0
DYD3_k127_1114500_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000004733 168.0
DYD3_k127_1134925_0 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 396.0
DYD3_k127_1134925_1 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000009033 172.0
DYD3_k127_1134925_2 4Fe-4S double cluster binding domain K18979 - 1.17.99.6 0.0000000001279 63.0
DYD3_k127_1134925_3 transporter - - - 0.000000007248 62.0
DYD3_k127_1134925_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00003676 55.0
DYD3_k127_113902_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.56e-214 681.0
DYD3_k127_115605_0 Aldehyde dehydrogenase family K22187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 571.0
DYD3_k127_115605_1 tRNA processing K06864 - - 0.0000000000000000000000000000000000000000000000000000000000003672 234.0
DYD3_k127_115605_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.00000000000000000000000002872 117.0
DYD3_k127_115605_3 UPF0056 membrane protein K05595 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000008638 110.0
DYD3_k127_115605_4 ECF sigma factor - - - 0.00000000001618 68.0
DYD3_k127_1163859_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000001733 201.0
DYD3_k127_1163859_1 regulation of single-species biofilm formation K13572,K13573 - - 0.000000000000000000000000000000008248 142.0
DYD3_k127_1163859_2 WYL domain - - - 0.000000000000000007567 91.0
DYD3_k127_1168374_0 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002761 456.0
DYD3_k127_1168374_1 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000004414 226.0
DYD3_k127_1168374_2 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000002862 152.0
DYD3_k127_1168374_3 Histidine kinase - - - 0.000000000000000000000000000002953 125.0
DYD3_k127_1168374_4 3' exoribonuclease, RNase T-like K02342 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0016020,GO:0030312,GO:0032991,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071944,GO:1902494,GO:1905347,GO:1905348,GO:1990391 2.7.7.7 0.0000000000000000000000000004964 126.0
DYD3_k127_1184663_0 PFAM Serine threonine protein kinase-related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 314.0
DYD3_k127_1184663_1 Two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.00000000000000000000000000000000000000000000000000004762 199.0
DYD3_k127_1184663_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000001182 182.0
DYD3_k127_1210013_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003904 275.0
DYD3_k127_1210013_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07104 - 1.13.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000001688 243.0
DYD3_k127_1210013_2 - - - - 0.00000000000000000000000000001166 134.0
DYD3_k127_1210013_3 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000006125 60.0
DYD3_k127_122198_1 protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000001409 128.0
DYD3_k127_122198_2 protein kinase activity - - - 0.000000000000000000001248 104.0
DYD3_k127_1244446_0 COG1858 Cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 561.0
DYD3_k127_1244446_1 FMN-dependent dehydrogenase K16422 - 1.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 417.0
DYD3_k127_1244446_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 428.0
DYD3_k127_1244446_3 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008349 402.0
DYD3_k127_1244446_4 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000154 186.0
DYD3_k127_1244446_5 Penicillinase repressor - - - 0.0000000000000000002374 94.0
DYD3_k127_1244446_6 Peptidoglycan-binding domain 1 protein - - - 0.00000003131 63.0
DYD3_k127_1251069_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 427.0
DYD3_k127_1251069_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004941 377.0
DYD3_k127_1251069_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000005626 263.0
DYD3_k127_1251069_3 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000006351 216.0
DYD3_k127_1251069_4 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000001095 166.0
DYD3_k127_1251069_5 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.0000000000000000000000000000002912 126.0
DYD3_k127_1251069_6 Protein of unknown function (DUF423) - - - 0.0000000000000000000000000004625 123.0
DYD3_k127_1251069_7 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000003284 101.0
DYD3_k127_1251069_8 Molybdopterin K03635 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657 2.8.1.12 0.00000000000003941 74.0
DYD3_k127_1255992_0 Dihydroxyacetone kinase family K07030 - - 0.000000000000000000000000000000000000000000000000008719 199.0
DYD3_k127_1255992_1 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000004663 113.0
DYD3_k127_1255992_2 WD40-like Beta Propeller Repeat - - - 0.0000000184 59.0
DYD3_k127_1281957_0 oxidase, subunit K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 341.0
DYD3_k127_1281957_1 ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000003023 245.0
DYD3_k127_1281957_2 N-terminal domain of galactosyltransferase - - - 0.000000000000000000000000000000000006385 153.0
DYD3_k127_1281957_3 Glycerol uptake facilitator GlpF, MIP aquaporin family of transporters K06188 - - 0.0000000005982 72.0
DYD3_k127_128599_0 methionine gamma-lyase K01761 - 4.4.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005402 279.0
DYD3_k127_128599_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000001001 211.0
DYD3_k127_128599_2 - - - - 0.00000000000000000002542 101.0
DYD3_k127_128599_3 Integral membrane protein DUF92 - - - 0.000000000001865 78.0
DYD3_k127_1303509_0 POT family K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 581.0
DYD3_k127_1303509_1 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 343.0
DYD3_k127_1303509_2 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002834 266.0
DYD3_k127_1303509_3 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000007968 206.0
DYD3_k127_1303509_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000544 162.0
DYD3_k127_1303509_5 KaiC K08482 - - 0.00000007736 54.0
DYD3_k127_1312260_0 phosphorelay signal transduction system K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 383.0
DYD3_k127_1312260_1 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000004151 228.0
DYD3_k127_1316571_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1284.0
DYD3_k127_1316571_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001923 282.0
DYD3_k127_1316571_2 lipid kinase activity - - - 0.000000000000000000000000000000000000005091 155.0
DYD3_k127_1324037_0 Rad51 - - - 0.000000000000000000004737 106.0
DYD3_k127_1324037_1 Putative 2OG-Fe(II) oxygenase - - - 0.0005018 54.0
DYD3_k127_1333839_0 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000003991 220.0
DYD3_k127_1333839_1 - - - - 0.0000009266 59.0
DYD3_k127_1335585_0 - - - - 0.0000000000000000000001842 111.0
DYD3_k127_1342700_0 TIGRFAM Gliding motility-associated ABC transporter ATP-binding subunit GldA K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004617 285.0
DYD3_k127_1342700_1 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000403 210.0
DYD3_k127_1342700_2 Domain of unknown function (DUF4340) - - - 0.000336 53.0
DYD3_k127_1371621_0 N-terminal domain of galactosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 301.0
DYD3_k127_1371621_1 N-terminal domain of galactosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001202 248.0
DYD3_k127_137697_0 Sigma-70, region 4 K02405 - - 0.0000000000000000000000000000000000000000000000000000000001829 214.0
DYD3_k127_137697_1 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.000000000000000000000007712 106.0
DYD3_k127_137697_2 - - - - 0.000005767 58.0
DYD3_k127_1398561_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 496.0
DYD3_k127_1398561_1 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000000000000007093 106.0
DYD3_k127_1403170_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005167 420.0
DYD3_k127_1403170_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000001918 130.0
DYD3_k127_1414807_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1045.0
DYD3_k127_1414807_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003149 284.0
DYD3_k127_1414807_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001081 273.0
DYD3_k127_1414807_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.000000000000000000000000000000000000000000000000000002879 199.0
DYD3_k127_1414807_4 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000000000000000000000000000000000000821 188.0
DYD3_k127_1414807_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000000462 142.0
DYD3_k127_1414807_6 Septum formation initiator K04074 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000009559 70.0
DYD3_k127_1431564_0 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006994 438.0
DYD3_k127_1431564_1 - - - - 0.0000000000000000000000000000000000000000000000004288 192.0
DYD3_k127_1431564_2 Protein of unknown function (DUF541) K09797 - - 0.00000000000000000000000000000000000000000001715 169.0
DYD3_k127_1431564_3 Amidohydrolase family - - - 0.00000000000000000000000000000000000001484 154.0
DYD3_k127_1449498_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000001095 136.0
DYD3_k127_1449498_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000006062 120.0
DYD3_k127_1496594_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000001454 248.0
DYD3_k127_1496594_1 transcription activator K03707 - 3.5.99.2 0.000000000000000000000000000000000000000000000000000000000001587 228.0
DYD3_k127_1496594_2 Serine threonine protein kinase - - - 0.0000000000000000000000000000000000000008931 162.0
DYD3_k127_1496594_3 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4-amino-5-aminomethyl-2-methylpyrimidine to 4-amino- 5-hydroxymethyl-2-methylpyrimidine (HMP) K20896 - - 0.000000000000000000000000001685 122.0
DYD3_k127_1496594_4 copper resistance - - - 0.00000000313 69.0
DYD3_k127_1510326_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1035.0
DYD3_k127_1521161_0 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000009836 224.0
DYD3_k127_1521161_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000005801 178.0
DYD3_k127_1523412_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 556.0
DYD3_k127_1523412_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 372.0
DYD3_k127_1538912_0 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006918 376.0
DYD3_k127_1544017_0 TrkA-C domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 501.0
DYD3_k127_1544017_1 sulfate adenylyltransferase K00958 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 365.0
DYD3_k127_1544017_2 Putative restriction endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000895 209.0
DYD3_k127_1551266_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003467 546.0
DYD3_k127_1551266_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000008034 130.0
DYD3_k127_1551266_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000000000000000000003041 101.0
DYD3_k127_1566288_0 imidazoleglycerol-phosphate dehydratase K01089 - 3.1.3.15,4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000001136 252.0
DYD3_k127_1566288_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000001473 177.0
DYD3_k127_1567673_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001069 295.0
DYD3_k127_1567673_1 Phospholipase/Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000489 181.0
DYD3_k127_157854_0 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0004082 44.0
DYD3_k127_157854_1 PHP family - - - 0.000428 53.0
DYD3_k127_1616376_0 choline dehydrogenase activity - - - 4.679e-198 629.0
DYD3_k127_1616376_1 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007975 346.0
DYD3_k127_1616376_2 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000001031 223.0
DYD3_k127_1616376_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000003729 224.0
DYD3_k127_1616376_4 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000001489 198.0
DYD3_k127_1616376_5 Cupin 2, conserved barrel domain protein K11477 - - 0.000000000000000000000000000000000259 141.0
DYD3_k127_1616881_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000595 365.0
DYD3_k127_1616881_1 Transporter associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 312.0
DYD3_k127_1616881_2 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000005572 179.0
DYD3_k127_1616881_3 - - - - 0.00000000000003556 78.0
DYD3_k127_1655273_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000005545 159.0
DYD3_k127_1655273_1 COG4257 Streptogramin lyase - - - 0.0000000002 70.0
DYD3_k127_1667716_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000001453 146.0
DYD3_k127_1667716_1 Competence protein K02238 - - 0.0000000000001451 81.0
DYD3_k127_1670396_0 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007229 584.0
DYD3_k127_1670396_1 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007771 448.0
DYD3_k127_1670396_2 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000000000000006257 161.0
DYD3_k127_1670396_3 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000006258 146.0
DYD3_k127_168187_0 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 9.98e-201 660.0
DYD3_k127_168187_1 TIGRFAM formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000001357 244.0
DYD3_k127_168187_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00122,K00335 - 1.17.1.9,1.6.5.3 0.0000000000000000000000000001411 119.0
DYD3_k127_1687120_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 2.267e-264 839.0
DYD3_k127_1687120_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 374.0
DYD3_k127_1687120_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000002249 137.0
DYD3_k127_1689154_0 - - - - 0.000000000000000000000000000000000000000000000000000000000001049 218.0
DYD3_k127_1689154_1 - - - - 0.0000000000000000000000000001942 124.0
DYD3_k127_17213_0 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000001147 262.0
DYD3_k127_17213_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000001339 198.0
DYD3_k127_17213_2 STAS domain K04749 - - 0.000000276 54.0
DYD3_k127_17213_3 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000009181 51.0
DYD3_k127_172534_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000002086 194.0
DYD3_k127_172534_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000005414 103.0
DYD3_k127_172534_2 PFAM Peptidoglycan-binding lysin domain - - - 0.0000000000006791 81.0
DYD3_k127_1740301_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 540.0
DYD3_k127_1740301_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 365.0
DYD3_k127_1740301_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 356.0
DYD3_k127_1740301_3 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000001168 259.0
DYD3_k127_1740301_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000111 58.0
DYD3_k127_1740301_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0003266 51.0
DYD3_k127_174535_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000005058 152.0
DYD3_k127_174535_1 PFAM Glycosyl transferase, group 1 - - - 0.000601 43.0
DYD3_k127_1748617_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.509e-265 831.0
DYD3_k127_1754887_0 AMP-binding enzyme C-terminal domain K00666,K01897,K18660 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006752 449.0
DYD3_k127_1754887_1 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 443.0
DYD3_k127_1754887_2 PFAM Amidase - - - 0.00000000000004407 78.0
DYD3_k127_1760379_0 Alanine dehydrogenase/PNT, C-terminal domain K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 334.0
DYD3_k127_1760379_1 Cation transport protein K03498,K03499 GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031224,GO:0031226,GO:0031420,GO:0034220,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0046983,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000002392 220.0
DYD3_k127_1769945_0 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 304.0
DYD3_k127_1769945_1 YCII-related domain - - - 0.00000000000000000000000000000002811 134.0
DYD3_k127_1769945_2 YCII-related domain - - - 0.000000000000000000000000000002254 124.0
DYD3_k127_177517_0 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0017144,GO:0018130,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0055129,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 292.0
DYD3_k127_177517_1 PFAM Rhomboid family - - - 0.00000000000000000000000000000000002173 141.0
DYD3_k127_177517_2 Glycosyltransferase family 87 - - - 0.000000000000000000000000000107 132.0
DYD3_k127_178023_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.838e-214 687.0
DYD3_k127_178023_1 regulation of DNA repair K03565 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000004214 66.0
DYD3_k127_1833268_0 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 368.0
DYD3_k127_1833268_1 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 308.0
DYD3_k127_1833268_2 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000001005 138.0
DYD3_k127_1833268_3 - - - - 0.00000000000000005448 92.0
DYD3_k127_1833268_4 Belongs to the thiolase family K07508,K17972 GO:0001666,GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006066,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006694,GO:0006695,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008219,GO:0008610,GO:0008637,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009150,GO:0009259,GO:0009628,GO:0009966,GO:0009968,GO:0009987,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0012501,GO:0016042,GO:0016043,GO:0016054,GO:0016125,GO:0016126,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019637,GO:0019693,GO:0019752,GO:0023051,GO:0023057,GO:0030258,GO:0031974,GO:0032787,GO:0032879,GO:0033043,GO:0033554,GO:0033865,GO:0033875,GO:0034032,GO:0034440,GO:0034641,GO:0035383,GO:0035795,GO:0036293,GO:0036294,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046395,GO:0046483,GO:0046902,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0055086,GO:0055114,GO:0060548,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072329,GO:0072521,GO:0090559,GO:1901028,GO:1901029,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902108,GO:1902109,GO:1902652,GO:1902653,GO:1905709,GO:2001233,GO:2001234 2.3.1.16,2.3.1.254 0.00000000000007772 71.0
DYD3_k127_1833268_5 Acid phosphatase homologues - - - 0.000000155 57.0
DYD3_k127_1848027_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 628.0
DYD3_k127_1848027_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000000000000000000000000000003655 209.0
DYD3_k127_1848027_2 Biotin-lipoyl like K03585 - - 0.0000000000000000000000000000000000000000000000000002808 198.0
DYD3_k127_1848027_3 PFAM outer membrane efflux protein - - - 0.000000004055 70.0
DYD3_k127_186901_0 Short repeat of unknown function (DUF308) - - - 0.00000000000000000000000000000000000000000139 164.0
DYD3_k127_186901_1 translation release factor activity K03265 GO:0001666,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0016020,GO:0030312,GO:0036293,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944 - 0.0000000000000000000000000508 123.0
DYD3_k127_186901_2 - - - - 0.0000000002481 61.0
DYD3_k127_1874290_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 299.0
DYD3_k127_1874290_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000002773 220.0
DYD3_k127_1874290_2 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000003311 192.0
DYD3_k127_1874290_3 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000006948 175.0
DYD3_k127_1884532_0 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009997 282.0
DYD3_k127_1884532_1 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001102 255.0
DYD3_k127_1884532_2 PFAM NAD dependent epimerase dehydratase family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000001671 186.0
DYD3_k127_1884532_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000001702 161.0
DYD3_k127_1884532_4 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000001846 112.0
DYD3_k127_1884532_5 Mammalian cell entry related domain protein K02067 - - 0.00000000000001641 86.0
DYD3_k127_1884532_6 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.0000000003331 71.0
DYD3_k127_1888821_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 546.0
DYD3_k127_1888821_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 526.0
DYD3_k127_190843_0 Bacterial regulatory protein, Fis family K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 460.0
DYD3_k127_190843_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000002206 136.0
DYD3_k127_1921833_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 511.0
DYD3_k127_1921833_1 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000001045 50.0
DYD3_k127_1921833_2 cell cycle K05589 GO:0000003,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0019954,GO:0022402,GO:0022414,GO:0030428,GO:0032153,GO:0032505,GO:0042802,GO:0043093,GO:0044464,GO:0051301,GO:0071944 - 0.00007506 50.0
DYD3_k127_1923501_0 UvrD-like helicase C-terminal domain K01144,K07464 - 3.1.11.5,3.1.12.1 0.0000000000000000000000000000000000000000000002389 192.0
DYD3_k127_1935050_0 signal transduction histidine kinase - - - 0.000006922 59.0
DYD3_k127_1938197_0 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000001589 218.0
DYD3_k127_1938197_1 Biotin-requiring enzyme - - - 0.000000000000000000000000000001113 139.0
DYD3_k127_1938197_2 ABC-type spermidine putrescine transport systems, ATPase components K02010 - 3.6.3.30 0.0000001675 57.0
DYD3_k127_1948515_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 451.0
DYD3_k127_1948515_1 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 383.0
DYD3_k127_1949900_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004906 383.0
DYD3_k127_1949900_1 Tetratricopeptide repeat K08309 - - 0.0000000000000000000000000000000000000001289 171.0
DYD3_k127_1949900_2 Cold-shock protein K03704 - - 0.0000000000000000000000005911 105.0
DYD3_k127_1961622_0 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 428.0
DYD3_k127_1963129_0 Glycosyltransferase like family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004284 309.0
DYD3_k127_1963129_1 4-amino-4-deoxy-L-arabinose transferase activity K14340 - - 0.0000000000000000000000000000000000000000000000000000000002099 233.0
DYD3_k127_1963129_2 4-amino-4-deoxy-L-arabinose transferase activity K14340 - - 0.00000000000000000000000000000000000001194 168.0
DYD3_k127_1963129_3 Bacterial membrane protein YfhO - - - 0.00000000000000000000001665 116.0
DYD3_k127_1976614_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006502 249.0
DYD3_k127_1976614_1 Polysaccharide deacetylase - - - 0.0000004653 63.0
DYD3_k127_1990177_0 RNA polymerase binding - - - 0.0000000000000005445 92.0
DYD3_k127_199937_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000001004 215.0
DYD3_k127_199937_1 - - - - 0.000000000000000000000000000000006603 139.0
DYD3_k127_2000203_0 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 469.0
DYD3_k127_2000203_1 - - - - 0.00000000000000000000000000000000000000000000000000000000001031 212.0
DYD3_k127_2000203_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000005659 139.0
DYD3_k127_2000203_3 phosphorelay signal transduction system K12132 - 2.7.11.1 0.00000000000000000000000198 113.0
DYD3_k127_2000203_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00004345 54.0
DYD3_k127_2005718_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006528 515.0
DYD3_k127_2005718_1 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 370.0
DYD3_k127_2005718_2 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000000000008739 133.0
DYD3_k127_2005718_3 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000001757 96.0
DYD3_k127_2007381_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 496.0
DYD3_k127_2007381_1 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009983 439.0
DYD3_k127_2010581_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 1.919e-226 711.0
DYD3_k127_2010581_1 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000113 124.0
DYD3_k127_2019585_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 1.103e-222 704.0
DYD3_k127_2019585_1 Ami_3 K01448 - 3.5.1.28 0.000000000000000004837 100.0
DYD3_k127_2027799_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000008479 76.0
DYD3_k127_2027799_1 two-component system sensor-response regulator hybrid protein - - - 0.0004839 52.0
DYD3_k127_2044920_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000949 443.0
DYD3_k127_2044920_1 Lumazine binding domain K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.00000000000000000000000000000000000000000005361 167.0
DYD3_k127_2051956_0 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 532.0
DYD3_k127_2051956_1 proteolysis - - - 0.000000000000000001146 91.0
DYD3_k127_2064922_0 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000006435 144.0
DYD3_k127_2064922_1 Protein of unknown function (DUF1207) - - - 0.000000000000088 84.0
DYD3_k127_2064922_2 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000004398 76.0
DYD3_k127_2079650_0 Belongs to the allantoicase family K01477 - 3.5.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 424.0
DYD3_k127_2079650_1 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 381.0
DYD3_k127_2079650_2 Belongs to the allantoicase family K01477 - 3.5.3.4 0.0000000000000000000000000000000000001417 149.0
DYD3_k127_2079650_3 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.000000000000000000000000000003597 127.0
DYD3_k127_2098286_0 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 310.0
DYD3_k127_2098286_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006047 297.0
DYD3_k127_2099388_0 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000002078 234.0
DYD3_k127_2099388_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000008332 115.0
DYD3_k127_2110366_0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006124 279.0
DYD3_k127_2110366_1 Flp/Fap pilin component K02651 - - 0.00001127 55.0
DYD3_k127_2118410_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 403.0
DYD3_k127_2118410_1 Protein of unknown function, DUF255 - - - 0.000000000000000000000000000000000000000000000000000000000000000003957 250.0
DYD3_k127_2118410_2 - - - - 0.000000007406 66.0
DYD3_k127_2118410_3 DinB family - - - 0.0001744 55.0
DYD3_k127_2134141_0 TIGRFAM ATP-dependent DNA helicase, RecQ K03654,K06877 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 312.0
DYD3_k127_2141601_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 9.869e-279 876.0
DYD3_k127_2141601_1 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000002389 214.0
DYD3_k127_2141601_2 ATP:ADP antiporter activity K01932,K03301 - - 0.00000000000000000000000000000000000000538 165.0
DYD3_k127_2141601_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000001887 62.0
DYD3_k127_2158016_0 Thiolase, C-terminal domain K00626,K07508 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 475.0
DYD3_k127_2158016_1 Dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003241 333.0
DYD3_k127_2158016_2 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000004796 191.0
DYD3_k127_2158016_3 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000001362 88.0
DYD3_k127_2178092_0 Anthranilate synthase component I, N terminal region K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 432.0
DYD3_k127_2178092_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000001663 254.0
DYD3_k127_2178092_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000006926 223.0
DYD3_k127_2178092_3 Protein of unknown function (DUF447) K09154 - - 0.0000000000000000000000000000000000000000000000000000007486 199.0
DYD3_k127_2178092_4 TIGRFAM beta-ribofuranosylaminobenzene 5'-phosphate synthase family - - - 0.0000000000000000000000000006838 117.0
DYD3_k127_2188545_0 PFAM Uncharacterised protein family UPF0027 K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 556.0
DYD3_k127_2188545_1 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 489.0
DYD3_k127_2188545_2 Chalcone and stilbene synthases, C-terminal domain K16167,K19580 - 2.3.1.233 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005782 414.0
DYD3_k127_2188545_3 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000009264 242.0
DYD3_k127_2188545_4 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K16168 - - 0.0000000000000000000000000000000000000000000000000000003721 213.0
DYD3_k127_2188545_5 Phosphopantetheine attachment site K02078 - - 0.0000005063 61.0
DYD3_k127_2191430_0 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007953 276.0
DYD3_k127_2191430_1 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000007183 153.0
DYD3_k127_2191430_2 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.00000000000000000000000000000000006478 139.0
DYD3_k127_2191430_3 Capsule assembly protein Wzi - - - 0.000000000000000337 92.0
DYD3_k127_220759_0 CarboxypepD_reg-like domain K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 469.0
DYD3_k127_220759_1 Belongs to the ABC transporter superfamily K02031,K02032,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 383.0
DYD3_k127_220759_2 Oligopeptide/dipeptide transporter, C-terminal region K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009683 362.0
DYD3_k127_220759_3 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008269 316.0
DYD3_k127_220759_4 bacteriocin transport K03561 - - 0.000000000000000000000000000000000000000002399 165.0
DYD3_k127_2222938_0 Mannose-6-phosphate isomerase - - - 0.0000000000000000000000000000000009139 133.0
DYD3_k127_2222938_1 Rdx family K07401 - - 0.0000001197 55.0
DYD3_k127_2222938_2 PFAM NlpC P60 family - - - 0.00006586 51.0
DYD3_k127_2226441_0 Amylo-alpha-1,6-glucosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 587.0
DYD3_k127_2226441_1 ligase activity, forming nitrogen-metal bonds K02230 - 6.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 326.0
DYD3_k127_2259087_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 0.0000000000000000000000000000000000003251 153.0
DYD3_k127_2259087_2 - - - - 0.00002314 47.0
DYD3_k127_2273610_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 415.0
DYD3_k127_2273610_1 CorA-like Mg2+ transporter protein K03284 GO:0000041,GO:0000287,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015087,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0050897,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0055085,GO:0065003,GO:0070838,GO:0071840,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903830 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 424.0
DYD3_k127_2273610_2 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.000000000000000000000000000000000000000003411 165.0
DYD3_k127_2273610_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000006482 161.0
DYD3_k127_2273610_4 Domain of unknown function (DUF1707) - - - 0.00000000000000000000000000000000004105 147.0
DYD3_k127_2274417_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 488.0
DYD3_k127_2274417_1 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 336.0
DYD3_k127_2274417_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000001983 246.0
DYD3_k127_2274417_3 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000006617 244.0
DYD3_k127_2274417_4 Pfam Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000155 221.0
DYD3_k127_2274417_5 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000101 94.0
DYD3_k127_2277370_0 ABC transporter transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007714 380.0
DYD3_k127_2277370_1 ABC transporter transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 299.0
DYD3_k127_2277370_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000002938 102.0
DYD3_k127_2282285_0 E1-E2 ATPase K17686 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 515.0
DYD3_k127_2282285_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000002621 164.0
DYD3_k127_2282285_2 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000000000000000000003187 138.0
DYD3_k127_2286786_0 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 410.0
DYD3_k127_2286786_1 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004149 356.0
DYD3_k127_2286786_2 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019441,GO:0019752,GO:0030429,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000008586 213.0
DYD3_k127_2286786_3 Putative cyclase K07130 - 3.5.1.9 0.000000000000000000000000000000000000000000005214 181.0
DYD3_k127_2286786_4 Translation initiation inhibitor, yjgF family K15067 - 3.5.99.5 0.00000000000000000000000000000000000000000003284 164.0
DYD3_k127_2290057_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000007913 228.0
DYD3_k127_2290057_1 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000002526 224.0
DYD3_k127_2295701_0 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000009089 198.0
DYD3_k127_2295701_1 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0000000000000000000000000000000000000000000000008324 184.0
DYD3_k127_2295801_0 LytB protein K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 484.0
DYD3_k127_2317626_0 Protein of unknown function (DUF445) - - - 0.00000001485 67.0
DYD3_k127_2338620_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 400.0
DYD3_k127_2338620_1 PFAM Tetratricopeptide repeat - - - 0.00005278 55.0
DYD3_k127_2344370_0 - - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 562.0
DYD3_k127_2344370_1 Belongs to the phosphoglycerate mutase family - - - 0.0000000000000000000000001463 122.0
DYD3_k127_2344370_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000154 50.0
DYD3_k127_2345097_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 459.0
DYD3_k127_2345097_1 ThiS family K03636 - - 0.0000000000000001776 89.0
DYD3_k127_2345097_2 Protein kinase domain K12132 - 2.7.11.1 0.000002135 52.0
DYD3_k127_2345097_3 cellulose binding - - - 0.00002218 57.0
DYD3_k127_2347208_0 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 490.0
DYD3_k127_2347208_1 CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000004025 121.0
DYD3_k127_2347208_2 Tetratricopeptide repeat - - - 0.000000000000000000000002727 105.0
DYD3_k127_2352957_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.731e-223 712.0
DYD3_k127_2352957_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919 548.0
DYD3_k127_2352957_2 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 453.0
DYD3_k127_2352957_3 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 391.0
DYD3_k127_2352957_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 376.0
DYD3_k127_2352957_5 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009344 284.0
DYD3_k127_2352957_6 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000001232 253.0
DYD3_k127_2352957_7 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.0000000000000000000000000000000008978 136.0
DYD3_k127_2372154_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 375.0
DYD3_k127_2372154_1 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 317.0
DYD3_k127_2372154_2 - - - - 0.00000000000000000000000000000000002227 143.0
DYD3_k127_2382673_0 PFAM peptidase S15 K06978 - - 3.468e-251 802.0
DYD3_k127_2382673_1 ubiquitin protein ligase binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009984 444.0
DYD3_k127_2384140_0 D-aminopeptidase K16203 - - 0.0000000000000000000000000000000000002086 153.0
DYD3_k127_2384140_1 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000002788 90.0
DYD3_k127_240643_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 487.0
DYD3_k127_240643_1 Fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 336.0
DYD3_k127_240643_2 domain, Protein - - - 0.00000000000000000000000000000000000000008309 174.0
DYD3_k127_240643_3 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000000000000000000000000000000000002953 155.0
DYD3_k127_240643_4 PFAM Phenazine biosynthesis PhzC PhzF protein - - - 0.000000000000000000000000001823 112.0
DYD3_k127_2415418_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007973 272.0
DYD3_k127_2415418_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585,K07799,K18298,K18901,K19586,K19595 - - 0.000000000000000000000000000000000000000273 164.0
DYD3_k127_2420580_0 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 323.0
DYD3_k127_2420580_1 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000006278 187.0
DYD3_k127_2420580_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000003623 106.0
DYD3_k127_2420580_4 AntiSigma factor - - - 0.0001806 52.0
DYD3_k127_2435262_0 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007159 305.0
DYD3_k127_2435262_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000005362 220.0
DYD3_k127_2435262_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000002181 156.0
DYD3_k127_2435262_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000006648 109.0
DYD3_k127_2450396_0 Peptidase dimerisation domain K01439,K13049 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007857 413.0
DYD3_k127_2450396_1 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000001532 159.0
DYD3_k127_2451258_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 581.0
DYD3_k127_2458970_0 - - - - 0.00000000000000000000000000000000004138 152.0
DYD3_k127_2458970_1 diguanylate cyclase - - - 0.000000000000000000000000000000004927 138.0
DYD3_k127_2486822_0 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042,K17468 - 2.9.1.1,4.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 375.0
DYD3_k127_2486822_1 Polynucleotide kinase 3 phosphatase - - - 0.00000000000000000000000000000002587 140.0
DYD3_k127_2502869_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 405.0
DYD3_k127_2502869_1 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000000000000002877 216.0
DYD3_k127_2502869_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00001745 50.0
DYD3_k127_2514162_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 631.0
DYD3_k127_2514162_1 PFAM Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000351 177.0
DYD3_k127_2514162_2 metalloendopeptidase activity K08602 - - 0.00000000000000000000000000000000000000003741 170.0
DYD3_k127_2514162_3 Alpha/beta hydrolase family - - - 0.000000001272 71.0
DYD3_k127_2514162_4 Enoyl-CoA hydratase/isomerase - - - 0.00004802 47.0
DYD3_k127_2520865_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000001489 260.0
DYD3_k127_2523089_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 631.0
DYD3_k127_2523089_1 DNA polymerase X family K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000001395 251.0
DYD3_k127_2523673_0 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000004091 275.0
DYD3_k127_2523673_1 O-acyltransferase activity - - - 0.000004425 49.0
DYD3_k127_2526826_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007404 439.0
DYD3_k127_2526826_1 Superoxide dismutase K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001707 265.0
DYD3_k127_2526826_2 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000000000000000000000000000000000000000009403 177.0
DYD3_k127_2526826_3 metal cluster binding K06940,K18475 - - 0.00000000000000000003035 103.0
DYD3_k127_2526826_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0002677 44.0
DYD3_k127_2539818_0 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 300.0
DYD3_k127_2539818_1 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007015 275.0
DYD3_k127_2539818_2 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000000000000000000008654 237.0
DYD3_k127_2539818_3 COG1691 NCAIR mutase (PurE)-related K06898 - - 0.000000000000000000000000000000000000000000000000000000000006661 220.0
DYD3_k127_2539818_4 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000000000000001114 218.0
DYD3_k127_2539818_5 Transcription elongation factor, N-terminal K03624 - - 0.000000000000000000000000000000000000006588 153.0
DYD3_k127_2539818_6 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000003416 144.0
DYD3_k127_2539818_7 Zinc ribbon domain K07164 - - 0.000008985 56.0
DYD3_k127_2539818_8 - - - - 0.00006468 51.0
DYD3_k127_2552020_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000002794 198.0
DYD3_k127_2552020_1 Belongs to the universal stress protein A family - - - 0.000002135 52.0
DYD3_k127_2569588_0 PQQ enzyme repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 586.0
DYD3_k127_2569588_1 TonB-dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 362.0
DYD3_k127_2569588_2 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003669 297.0
DYD3_k127_2585336_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 536.0
DYD3_k127_2585336_1 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007198 408.0
DYD3_k127_2590527_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 1.91e-200 635.0
DYD3_k127_2600718_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 569.0
DYD3_k127_2600718_1 - - - - 0.0000000000000000000000000000000000000000000000000694 187.0
DYD3_k127_2600718_2 exported protein K09005 - - 0.000000000000000000000000000000000009861 146.0
DYD3_k127_2600718_3 Archease protein family (MTH1598/TM1083) - - - 0.00000000000009434 82.0
DYD3_k127_262013_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 7.895e-316 1000.0
DYD3_k127_262013_1 Rhodanese Homology Domain K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 584.0
DYD3_k127_262013_2 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003004 270.0
DYD3_k127_262013_3 Ferritin Dps family protein K03594 - 1.16.3.1 0.000000000000000000000000000000000000005935 152.0
DYD3_k127_262013_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000245 136.0
DYD3_k127_262013_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000003494 130.0
DYD3_k127_262013_6 Outer membrane efflux protein - - - 0.0000000000000000000000000007658 129.0
DYD3_k127_262013_7 Sulfurtransferase - - - 0.00000000000001341 85.0
DYD3_k127_262013_8 Domain of unknown function (DUF202) K00389 - - 0.000000000001609 71.0
DYD3_k127_262013_9 transcriptional regulator - - - 0.00000000001362 74.0
DYD3_k127_2623867_0 Heat shock 70 kDa protein K04043 - - 1.901e-270 846.0
DYD3_k127_2623867_1 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 349.0
DYD3_k127_2638683_0 glycolate biosynthetic process K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000009492 256.0
DYD3_k127_2638683_1 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000001899 166.0
DYD3_k127_2638683_2 PFAM FAD linked oxidase domain protein - - - 0.000000006021 65.0
DYD3_k127_2653437_0 Hydrogenase formation hypA family K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007675 517.0
DYD3_k127_2653437_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 499.0
DYD3_k127_2653437_2 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 401.0
DYD3_k127_2653437_3 Hydrogenase expression formation protein K04653 - - 0.00000000000000000000004926 105.0
DYD3_k127_2653437_4 Belongs to the carbamoyltransferase HypF family K04656 - - 0.00000000000861 66.0
DYD3_k127_26548_0 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007749 469.0
DYD3_k127_26548_1 tRNA nucleotidyltransferase domain 2 putative K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000002747 72.0
DYD3_k127_2660539_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 314.0
DYD3_k127_2660539_1 Cytochrome c assembly protein - - - 0.00000002491 64.0
DYD3_k127_2673642_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 438.0
DYD3_k127_2673642_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 356.0
DYD3_k127_2673642_2 Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005143 246.0
DYD3_k127_2673642_3 Scaffold protein Nfu/NifU N terminal - - - 0.000000000006631 68.0
DYD3_k127_2677793_0 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001474 276.0
DYD3_k127_2677793_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000001083 181.0
DYD3_k127_2677793_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000001158 157.0
DYD3_k127_2677793_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.000000001652 62.0
DYD3_k127_267891_0 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000108 168.0
DYD3_k127_267891_1 Protein kinase domain K08884 - 2.7.11.1 0.0001519 53.0
DYD3_k127_2678995_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003157 284.0
DYD3_k127_2678995_1 Putative aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009044 261.0
DYD3_k127_2678995_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000006106 84.0
DYD3_k127_2678995_3 Family of unknown function (DUF5335) - - - 0.0006834 52.0
DYD3_k127_2682488_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 382.0
DYD3_k127_2682488_1 - - - - 0.0000000000000000000000000000000000000000000000000003551 208.0
DYD3_k127_2682488_2 - - - - 0.0000000000000000000000000005881 118.0
DYD3_k127_2705579_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006151 338.0
DYD3_k127_2705579_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000006992 163.0
DYD3_k127_2705579_2 Peptidyl-prolyl cis-trans K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000007869 141.0
DYD3_k127_2707527_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000962 279.0
DYD3_k127_2707527_1 PFAM Sodium hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000007406 184.0
DYD3_k127_2707527_2 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.000000000000000000000000000000000002141 149.0
DYD3_k127_2707527_3 PFAM thioesterase superfamily K07107 - - 0.0000000000000000000000000003054 128.0
DYD3_k127_2707527_4 Lipopolysaccharide-assembly - - - 0.0000000000000000005468 95.0
DYD3_k127_2721382_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 6.5e-206 662.0
DYD3_k127_2721382_1 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 602.0
DYD3_k127_2721382_10 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000002452 61.0
DYD3_k127_2721382_11 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000001515 60.0
DYD3_k127_2721382_12 NHL repeat - - - 0.00002802 56.0
DYD3_k127_2721382_13 Sulfotransferase family - - - 0.0001866 55.0
DYD3_k127_2721382_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 487.0
DYD3_k127_2721382_3 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 424.0
DYD3_k127_2721382_4 Bacterial dnaA protein helix-turn-helix domain K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 417.0
DYD3_k127_2721382_5 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000003507 249.0
DYD3_k127_2721382_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000132 192.0
DYD3_k127_2721382_7 NUDIX hydrolase - - - 0.000000000000000000000000004542 130.0
DYD3_k127_2721382_9 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000003315 61.0
DYD3_k127_2723353_0 Na H anti-porter - - - 2.057e-215 680.0
DYD3_k127_2723353_1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006531 324.0
DYD3_k127_2723353_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.000000000000000000000000000001906 128.0
DYD3_k127_2724456_0 Resistance to Hg(2 ) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) K00520 - 1.16.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004404 456.0
DYD3_k127_2724456_1 PIN domain K07065 - - 0.0000001066 53.0
DYD3_k127_272780_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000001567 234.0
DYD3_k127_272780_1 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000444 153.0
DYD3_k127_272780_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000005428 162.0
DYD3_k127_273366_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005556 533.0
DYD3_k127_273366_1 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000001459 106.0
DYD3_k127_2738758_0 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide - - - 2.449e-227 729.0
DYD3_k127_2738758_1 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 433.0
DYD3_k127_2738758_2 Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 316.0
DYD3_k127_2739770_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 380.0
DYD3_k127_2739770_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008374 379.0
DYD3_k127_2739770_2 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000002024 232.0
DYD3_k127_2739770_3 Lysophospholipase K01048 - 3.1.1.5 0.000000000000000000000000000000000000000000001632 180.0
DYD3_k127_2739770_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000004067 147.0
DYD3_k127_2739770_5 CinA-like protein K03742 - 3.5.1.42 0.000000000000000000000000000000000008589 147.0
DYD3_k127_2739770_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000007276 125.0
DYD3_k127_2739770_7 - - - - 0.000000000748 62.0
DYD3_k127_2739770_8 Domain of unknown function (DUF3943) - - - 0.0003758 51.0
DYD3_k127_2768712_0 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 - 1.13.11.53,1.13.11.54 0.0000000000000000000000000000000000000000000000000000000000000000003742 238.0
DYD3_k127_2768712_1 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.00000000000000000000000000000000000000000000000000000006864 208.0
DYD3_k127_2768712_2 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.000000000000000000000000000000001466 134.0
DYD3_k127_2769985_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 584.0
DYD3_k127_2769985_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 299.0
DYD3_k127_2788402_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 453.0
DYD3_k127_2788402_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000001472 241.0
DYD3_k127_2788402_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000002621 128.0
DYD3_k127_2794544_0 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000001124 193.0
DYD3_k127_2794544_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141 - 0.000000000000000000000001566 106.0
DYD3_k127_2808954_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 533.0
DYD3_k127_2808954_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000001728 248.0
DYD3_k127_2808954_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000025 165.0
DYD3_k127_281301_0 Na+ dependent nucleoside transporter C-terminus K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 400.0
DYD3_k127_281301_1 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000002505 242.0
DYD3_k127_281301_2 Short-chain dehydrogenase reductase sdr K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000007544 184.0
DYD3_k127_2843454_0 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000007617 243.0
DYD3_k127_2843454_1 Tetratricopeptide repeat - - - 0.000006735 53.0
DYD3_k127_2848576_0 Domain of unknown function (DUF4153) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 332.0
DYD3_k127_2848576_1 radical SAM domain protein - - - 0.000000000000000000000000000001644 125.0
DYD3_k127_2848576_2 Tetratricopeptide repeat - - - 0.00000000000000000000000145 115.0
DYD3_k127_2882415_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 419.0
DYD3_k127_2882415_1 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 439.0
DYD3_k127_2884917_0 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000002445 141.0
DYD3_k127_2884917_1 protein import - - - 0.00000000000147 76.0
DYD3_k127_2886618_0 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752,K13818 - 2.7.7.77 0.0000000000000000000000000003979 129.0
DYD3_k127_2886618_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000005041 106.0
DYD3_k127_2886618_2 metal-dependent protease of the Pad1 Jab1 superfamily - - - 0.0000003871 61.0
DYD3_k127_2886618_3 - - - - 0.000008642 57.0
DYD3_k127_2886618_4 Cell Wall K01448 - 3.5.1.28 0.0008268 51.0
DYD3_k127_2887512_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004015 287.0
DYD3_k127_2887512_1 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000003361 227.0
DYD3_k127_2890955_0 Histidine kinase K13587 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000002287 213.0
DYD3_k127_2892882_0 PFAM Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 459.0
DYD3_k127_2892882_1 O-methyltransferase K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 301.0
DYD3_k127_2892882_2 protein related to plant photosystem II stability assembly factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000196 288.0
DYD3_k127_2892882_3 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000001269 203.0
DYD3_k127_2892882_4 GYD domain - - - 0.00000000000000000000000003857 111.0
DYD3_k127_2892882_5 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000006966 62.0
DYD3_k127_2906582_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001839 290.0
DYD3_k127_2906582_1 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003604 246.0
DYD3_k127_2906582_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000002966 224.0
DYD3_k127_2935312_0 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002439 269.0
DYD3_k127_2935312_1 PFAM NHL repeat containing protein K13735 - - 0.00001774 58.0
DYD3_k127_2958519_0 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 397.0
DYD3_k127_2958519_1 PTS system sorbose subfamily IIB component K19507 - - 0.00000000000000000004006 94.0
DYD3_k127_2958519_2 system, fructose subfamily IIA component K02793,K02794 - 2.7.1.191 0.000008244 55.0
DYD3_k127_2999695_0 Carbamoyltransferase C-terminus K00612 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 346.0
DYD3_k127_2999695_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 344.0
DYD3_k127_2999695_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000001549 244.0
DYD3_k127_2999695_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000003496 221.0
DYD3_k127_2999695_4 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000002107 156.0
DYD3_k127_2999695_5 - - - - 0.0000000000000000000000001672 119.0
DYD3_k127_2999695_6 - - - - 0.0000000001973 70.0
DYD3_k127_2999695_7 integral membrane protein - - - 0.0000001532 61.0
DYD3_k127_3004144_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.51e-235 742.0
DYD3_k127_3004144_1 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000004264 138.0
DYD3_k127_302721_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 414.0
DYD3_k127_302721_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 338.0
DYD3_k127_302721_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009569 250.0
DYD3_k127_302721_3 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000002143 205.0
DYD3_k127_302721_4 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000004402 124.0
DYD3_k127_3046189_0 Dehydrogenase - - - 1.427e-225 721.0
DYD3_k127_3046189_1 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000002676 156.0
DYD3_k127_3065122_0 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000001986 200.0
DYD3_k127_3083133_0 Transglycosylase SLT domain K08307 - - 0.0000000000000000000000000000000000000000000000000002299 194.0
DYD3_k127_3083133_1 PHP-associated - - - 0.0000000000000000000000000000000005634 141.0
DYD3_k127_3088626_0 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006166 560.0
DYD3_k127_3088626_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 314.0
DYD3_k127_3088626_2 Amidohydrolase family - - - 0.000000000000000000000000000000486 124.0
DYD3_k127_3134269_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006954 456.0
DYD3_k127_3134683_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000004609 208.0
DYD3_k127_3134683_1 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.00000000000000000000000000007752 130.0
DYD3_k127_3134683_2 COG3209 Rhs family protein - - - 0.0003533 51.0
DYD3_k127_3173840_1 ATP ADP translocase K03301 - - 0.00000000000000000000000000000000000000001848 166.0
DYD3_k127_317723_0 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 299.0
DYD3_k127_317723_1 Peptidase dimerisation domain K01438 - 3.5.1.16 0.000000000000000000000000000000000003053 144.0
DYD3_k127_3180548_0 Chase2 domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 345.0
DYD3_k127_3180548_1 PFAM OmpA MotB domain protein - - - 0.000000000000000000000000000000000001781 146.0
DYD3_k127_318201_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006495 319.0
DYD3_k127_318201_1 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000007232 143.0
DYD3_k127_318201_2 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.0000000000000000000002382 110.0
DYD3_k127_318201_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 0.00000000000000001141 96.0
DYD3_k127_318201_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000007709 72.0
DYD3_k127_3200922_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008478 450.0
DYD3_k127_3200922_1 Belongs to the glycosyl hydrolase 32 family K01193 - 3.2.1.26 0.00002748 55.0
DYD3_k127_3207688_0 Peptidase S46 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 369.0
DYD3_k127_3207688_1 - - - - 0.00000000000000000381 84.0
DYD3_k127_3210636_0 Thioredoxin-like - - - 0.0000000000000000007438 101.0
DYD3_k127_3225939_0 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000002664 187.0
DYD3_k127_3225939_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000001408 105.0
DYD3_k127_3225939_2 - - - - 0.000004438 59.0
DYD3_k127_3228629_0 Acetamidase/Formamidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 413.0
DYD3_k127_3228629_1 Glutaredoxin - - - 0.00000001723 58.0
DYD3_k127_3228629_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.0002093 49.0
DYD3_k127_3234848_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1492.0
DYD3_k127_3238364_0 Nucleoside H+ symporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 468.0
DYD3_k127_3238364_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 378.0
DYD3_k127_3238364_2 Threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 339.0
DYD3_k127_3238364_3 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 312.0
DYD3_k127_3238364_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000046 121.0
DYD3_k127_3238364_5 DUF167 K09131 - - 0.000000000000000000009764 96.0
DYD3_k127_3243768_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 560.0
DYD3_k127_3243768_1 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 387.0
DYD3_k127_324724_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001342 278.0
DYD3_k127_324724_1 iron-sulfur cluster biosynthesis transcriptional regulator SufR K09012 - - 0.000000000000000000000000000000000000000000000000000000000000000776 226.0
DYD3_k127_3283927_0 Helix-hairpin-helix motif K02337 - 2.7.7.7 0.0 1306.0
DYD3_k127_3283927_1 Elongation factor G C-terminus K06207 - - 7.542e-220 728.0
DYD3_k127_3283927_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 436.0
DYD3_k127_3283927_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 347.0
DYD3_k127_3283927_4 Belongs to the enoyl-CoA hydratase isomerase family K01782,K01825 - 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 316.0
DYD3_k127_3283927_5 PSP1 C-terminal conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 289.0
DYD3_k127_3283927_6 Peptidase family M23 K21471 - - 0.0000000000000000000000000000000000000005386 161.0
DYD3_k127_3283927_7 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000001961 145.0
DYD3_k127_3283927_8 Domain of unknown function (DUF4837) - - - 0.0008533 51.0
DYD3_k127_3310418_0 PFAM peptidase T2 asparaginase 2 K01444,K13051 - 3.4.19.5,3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005069 296.0
DYD3_k127_3310418_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000004019 205.0
DYD3_k127_3348234_0 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000000000000000000000004305 218.0
DYD3_k127_3348234_1 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000002371 183.0
DYD3_k127_3348240_0 MatE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000594 534.0
DYD3_k127_3348240_1 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000822 347.0
DYD3_k127_3348240_2 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004885 286.0
DYD3_k127_3348240_3 Beta-lactamase class A K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000001439 238.0
DYD3_k127_3348240_4 NAD(P)H dehydrogenase (quinone) activity K00355 - 1.6.5.2 0.000000000000000000000000000000000000000000000000002449 207.0
DYD3_k127_3348240_5 LemA family K03744 - - 0.00000000000000000000000001103 119.0
DYD3_k127_3348240_6 Protein of unknown function (DUF2911) - - - 0.0000000000000000002103 96.0
DYD3_k127_3348240_7 Adenylate and Guanylate cyclase catalytic domain - - - 0.00000006449 65.0
DYD3_k127_3348240_8 - - - - 0.0006452 48.0
DYD3_k127_3357193_0 Polysaccharide biosynthesis C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 363.0
DYD3_k127_3357193_1 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000001132 217.0
DYD3_k127_3357193_2 Cytochrome c mono- and diheme variants - - - 0.0000000000000000000009623 99.0
DYD3_k127_3357193_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000001378 54.0
DYD3_k127_3360357_0 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 415.0
DYD3_k127_3360357_1 e3 binding domain K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 370.0
DYD3_k127_3360357_2 Dehydrogenase E1 component K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000005159 267.0
DYD3_k127_3360357_3 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.0000000000000000000000000000000000000000000005922 177.0
DYD3_k127_3360357_4 - - - - 0.000000000000000000000000000000001206 143.0
DYD3_k127_3360357_5 Nucleotidyl transferase of unknown function (DUF2204) - - - 0.000000000000001575 88.0
DYD3_k127_3362399_0 L-lysine 6-monooxygenase (NADPH-requiring) K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 418.0
DYD3_k127_3362399_1 Serine dehydratase alpha chain K01752 - 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005127 283.0
DYD3_k127_3362399_2 Serine dehydratase beta chain K01752 - 4.3.1.17 0.0000000000000000000000000000000000000000000000000000000000000000002477 236.0
DYD3_k127_3362399_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000001272 206.0
DYD3_k127_3362399_4 acr, cog1993 K09137 - - 0.00000000000000000000000000000000000001314 148.0
DYD3_k127_3362399_5 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000001361 119.0
DYD3_k127_3365865_0 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 355.0
DYD3_k127_3365865_1 Tetratricopeptide repeat - - - 0.00000007258 66.0
DYD3_k127_3366360_0 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000002185 198.0
DYD3_k127_3366360_1 Belongs to the UPF0145 family - - - 0.0000000000005657 81.0
DYD3_k127_3376681_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005123 433.0
DYD3_k127_3376681_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 421.0
DYD3_k127_3376681_2 Dihydrodipicolinate synthetase family - - - 0.00000000000000000000000000000000000000000000000000000000006856 229.0
DYD3_k127_3376681_3 4-phosphoerythronate dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000524 174.0
DYD3_k127_3381502_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 338.0
DYD3_k127_3381502_1 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 0.000000000000000006146 85.0
DYD3_k127_3389752_0 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000705 222.0
DYD3_k127_340384_0 pilus organization - - - 0.000000000000000000000000000000000001244 156.0
DYD3_k127_340384_1 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000005803 151.0
DYD3_k127_340384_2 usher protein - - - 0.0000000000000000000000106 117.0
DYD3_k127_340384_4 usher protein - - - 0.0000001793 59.0
DYD3_k127_340384_5 Domain of unknown function (DUF4402) - - - 0.00001164 54.0
DYD3_k127_3407818_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 620.0
DYD3_k127_3407818_1 Biotin-requiring enzyme - - - 0.00000000000000000000002182 108.0
DYD3_k127_3407818_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000002401 73.0
DYD3_k127_3412887_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1145.0
DYD3_k127_3412887_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 9.506e-209 676.0
DYD3_k127_3412887_2 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000000000000000000000000000001187 218.0
DYD3_k127_3412887_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969,K03574 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18,3.6.1.55 0.0000000000000000000000000000000000000003339 157.0
DYD3_k127_3417010_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 523.0
DYD3_k127_3417010_1 MacB-like periplasmic core domain K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003693 334.0
DYD3_k127_341710_0 TIGRFAM Formylmethanofuran dehydrogenase, subunit A K00200 - 1.2.7.12 4.894e-259 811.0
DYD3_k127_341710_1 TIGRFAM formylmethanofuran dehydrogenase subunit B K00201 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007327 280.0
DYD3_k127_341710_2 Formylmethanofuran-tetrahydromethanopterin formyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007737 266.0
DYD3_k127_3417779_0 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008788 434.0
DYD3_k127_3417779_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 329.0
DYD3_k127_3418983_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000001811 155.0
DYD3_k127_3437224_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 2.214e-199 646.0
DYD3_k127_3437224_1 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 357.0
DYD3_k127_3437224_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K04068,K10026 - 1.97.1.4,4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000004418 256.0
DYD3_k127_3437224_3 Cupredoxin-like domain - - - 0.00000000000000000000000000000000000000002386 157.0
DYD3_k127_3437224_4 cellulose binding - - - 0.0002299 47.0
DYD3_k127_345964_0 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000005176 259.0
DYD3_k127_345964_1 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0000726,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008833,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.2 0.000000000000000000000000000000000004536 141.0
DYD3_k127_345964_2 Electron transfer flavoprotein domain K03522 - - 0.00000000000000000209 95.0
DYD3_k127_3460289_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009213 392.0
DYD3_k127_3460289_1 ATP cob(I)alamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000002394 165.0
DYD3_k127_3460289_2 FAD binding domain K00104,K11472 - 1.1.3.15 0.00000000000000000002135 104.0
DYD3_k127_3460289_3 - - - - 0.00007616 55.0
DYD3_k127_3464167_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 3.599e-207 677.0
DYD3_k127_3464167_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 318.0
DYD3_k127_3464167_2 Nad-dependent epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000001606 185.0
DYD3_k127_3464167_3 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000001313 161.0
DYD3_k127_3464167_4 - - - - 0.0001471 53.0
DYD3_k127_3475742_0 MerR, DNA binding K19591 - - 0.00000000000000000000000004938 115.0
DYD3_k127_3475742_1 PFAM Outer membrane efflux protein - - - 0.00000000000000005028 90.0
DYD3_k127_3475742_2 Heavy-metal-associated domain - - - 0.000000002194 70.0
DYD3_k127_3476170_0 PFAM multicopper oxidase type 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 331.0
DYD3_k127_3480464_0 PFAM ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 336.0
DYD3_k127_3480464_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008104 291.0
DYD3_k127_3480464_2 RDD family - - - 0.000000000000000000000000000000000000000000000003923 189.0
DYD3_k127_3480464_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000855 72.0
DYD3_k127_3484616_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 522.0
DYD3_k127_3484616_1 PglZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 526.0
DYD3_k127_3484616_2 Glycosyltransferase family 9 (heptosyltransferase) K12982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 325.0
DYD3_k127_3484616_3 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.0000000000000000000000000001649 121.0
DYD3_k127_3484616_4 Polysaccharide biosynthesis/export protein - - - 0.0000000000000000000000000003738 124.0
DYD3_k127_3498856_0 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 497.0
DYD3_k127_3498856_1 peptidase S9 prolyl oligopeptidase active site domain protein K01303 - 3.4.19.1 0.0000000000000000000000000004099 131.0
DYD3_k127_3532832_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009222 271.0
DYD3_k127_3532905_0 carbamoyl transferase, NodU family K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 422.0
DYD3_k127_3532905_1 Male sterility protein K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 343.0
DYD3_k127_3532905_2 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002129 265.0
DYD3_k127_3532905_3 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000002297 187.0
DYD3_k127_3532905_4 - - - - 0.000000000000000000000000000000000003542 151.0
DYD3_k127_3532905_5 PFAM glycosyl transferase group 1 - - - 0.000000008329 67.0
DYD3_k127_3543546_0 Amidohydrolase family - - - 2.5e-203 648.0
DYD3_k127_3543546_1 Zinc dependent phospholipase C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001174 280.0
DYD3_k127_3543546_2 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000003829 174.0
DYD3_k127_3544609_0 Cytochrome C assembly protein K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016021,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0031224,GO:0031226,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.00000000000000000000000000000000000000000000000000000000000000002095 245.0
DYD3_k127_3544609_1 phosphoglycerate mutase K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000001796 204.0
DYD3_k127_3544609_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000002666 197.0
DYD3_k127_3544609_3 ATPase activity K01990,K02193 - 3.6.3.41 0.000000000000000000000000000000000000000002055 163.0
DYD3_k127_3544609_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000003189 129.0
DYD3_k127_3544609_5 Cytochrome c-type biogenesis protein K02198 - - 0.0000000000000000000004346 102.0
DYD3_k127_3551773_0 spermidine synthase activity - - - 2.041e-236 753.0
DYD3_k127_3551773_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 490.0
DYD3_k127_3551773_2 oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000001059 147.0
DYD3_k127_3551773_3 Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE K06039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0034214,GO:0042802,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0051259,GO:0065003,GO:0071840 - 0.0000000000000000000000001493 108.0
DYD3_k127_3556129_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000001898 245.0
DYD3_k127_3556129_1 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000003941 133.0
DYD3_k127_356371_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 642.0
DYD3_k127_356371_1 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 412.0
DYD3_k127_356371_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000004528 220.0
DYD3_k127_3566872_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 554.0
DYD3_k127_3566872_1 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 481.0
DYD3_k127_3566872_2 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006736 444.0
DYD3_k127_3566872_3 PAS domain K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 321.0
DYD3_k127_3566872_4 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006681 263.0
DYD3_k127_3566872_5 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002646 259.0
DYD3_k127_3566872_6 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000009123 247.0
DYD3_k127_3567949_0 Protein of unknown function (DUF3179) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 378.0
DYD3_k127_3567949_1 Permease K06901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 337.0
DYD3_k127_3567949_2 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000004016 153.0
DYD3_k127_3567949_3 NHL repeat - - - 0.00000000000000000000000001901 113.0
DYD3_k127_3567949_4 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000008614 91.0
DYD3_k127_3567949_5 hydroperoxide reductase activity - - - 0.0000000000004053 75.0
DYD3_k127_3573841_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit K02117 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044464,GO:0044769,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1902600 3.6.3.14,3.6.3.15 0.00000000000000000000000000000000000000003338 162.0
DYD3_k127_3573841_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.00000105 61.0
DYD3_k127_3573841_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02119 - - 0.0001072 53.0
DYD3_k127_3593820_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 413.0
DYD3_k127_3593820_1 transporter - - - 0.00000000000000000000000000000000000000000349 156.0
DYD3_k127_3593820_2 - - - - 0.000000004276 61.0
DYD3_k127_3602584_0 Bacterial membrane protein, YfhO - - - 0.0000000000000000000000000000000000000000000000000000000000759 220.0
DYD3_k127_3602584_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000001498 211.0
DYD3_k127_3602584_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000002109 128.0
DYD3_k127_3609656_0 MotA/TolQ/ExbB proton channel family K03562 - - 0.0000000000000000000000000000000000000000000002327 178.0
DYD3_k127_3609656_1 biopolymer transport protein K03559,K03560 - - 0.000000000000005618 82.0
DYD3_k127_3609656_2 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0008835 45.0
DYD3_k127_3609656_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0009559 51.0
DYD3_k127_3627667_0 ATP-dependent helicase nuclease subunit A K16898 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 3.6.4.12 0.000000000000000000004183 106.0
DYD3_k127_3627667_1 COG3857 ATP-dependent nuclease, subunit B K16899 - 3.6.4.12 0.0000000000006378 79.0
DYD3_k127_3633431_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.123e-239 763.0
DYD3_k127_3633431_1 CYTH - - - 0.000000000000000000000000000000000000000000000000001831 187.0
DYD3_k127_3633431_2 CYTH - - - 0.0000000000000000000000000000000000000000000001731 185.0
DYD3_k127_3633431_3 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000009846 140.0
DYD3_k127_365138_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 1.895e-242 767.0
DYD3_k127_365138_1 oligopeptide transporter, OPT family - - - 0.00000004968 57.0
DYD3_k127_3657245_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.098e-266 834.0
DYD3_k127_3657245_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 323.0
DYD3_k127_3657245_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000000000000008491 263.0
DYD3_k127_3657245_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000001661 260.0
DYD3_k127_3657245_4 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000004703 237.0
DYD3_k127_3657245_5 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000000000051 210.0
DYD3_k127_3657245_6 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000001168 198.0
DYD3_k127_3657245_7 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000006899 192.0
DYD3_k127_3657245_8 bacteriocin transport K03561 - - 0.000000000000000000000000000000000003257 145.0
DYD3_k127_3666833_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.623e-297 946.0
DYD3_k127_3667983_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 366.0
DYD3_k127_3667983_1 belongs to the sigma-70 factor family - - - 0.0000000000000000000001172 104.0
DYD3_k127_3668717_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007707 271.0
DYD3_k127_3681037_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003204 505.0
DYD3_k127_3681037_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806 333.0
DYD3_k127_3681037_2 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000000000000004786 220.0
DYD3_k127_3682977_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 494.0
DYD3_k127_3682977_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 372.0
DYD3_k127_3682977_2 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.0000000000000000000000000000000000000000000004224 173.0
DYD3_k127_3682977_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000004418 70.0
DYD3_k127_3682977_4 PFAM Sporulation - - - 0.00008354 49.0
DYD3_k127_3698940_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000001634 186.0
DYD3_k127_3698940_1 Belongs to the MurCDEF family K01924 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.00000000000000000000000000000000000000000007836 166.0
DYD3_k127_3698940_2 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000001563 165.0
DYD3_k127_3698940_3 Cell division protein FtsQ K03589 - - 0.000000000001509 80.0
DYD3_k127_3715893_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 1.294e-245 779.0
DYD3_k127_3715893_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 526.0
DYD3_k127_3718053_0 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 385.0
DYD3_k127_3718053_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000008699 190.0
DYD3_k127_3718053_2 DinB family - - - 0.0000000000000000000000000000000000000000000001799 173.0
DYD3_k127_3718053_3 Putative zinc-finger - - - 0.000002947 60.0
DYD3_k127_3719162_0 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000001389 92.0
DYD3_k127_3719162_1 diguanylate cyclase - - - 0.000000000181 72.0
DYD3_k127_3732717_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 606.0
DYD3_k127_3750492_0 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 484.0
DYD3_k127_3750492_1 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000001642 58.0
DYD3_k127_3811513_0 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 417.0
DYD3_k127_3811513_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 328.0
DYD3_k127_3825126_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 424.0
DYD3_k127_3825126_1 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.0000000000002144 78.0
DYD3_k127_3826465_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 1.607e-319 996.0
DYD3_k127_3826465_1 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000001043 194.0
DYD3_k127_3826465_2 - - - - 0.000000007471 70.0
DYD3_k127_3835795_0 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 354.0
DYD3_k127_3835795_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 339.0
DYD3_k127_3849254_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 6.317e-208 683.0
DYD3_k127_3849254_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883,K15526 GO:0000166,GO:0001871,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010125,GO:0010126,GO:0010467,GO:0016020,GO:0016070,GO:0016137,GO:0016138,GO:0016874,GO:0016875,GO:0016879,GO:0016880,GO:0017076,GO:0019538,GO:0019752,GO:0030246,GO:0030247,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035446,GO:0035639,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:2001065 6.1.1.16,6.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 377.0
DYD3_k127_3849254_2 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 361.0
DYD3_k127_3849254_3 Protein of unknown function (DUF1232) - - - 0.000000000000000000003954 100.0
DYD3_k127_3870189_0 OmpA family - - - 0.000000000000000000000000000000000000000000000000001059 204.0
DYD3_k127_3870189_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.00000000000000000000000000000000000000000001169 167.0
DYD3_k127_3872743_0 Ham1 family K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000002905 184.0
DYD3_k127_3872743_1 - - - - 0.0000000000000000000001679 110.0
DYD3_k127_3881617_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 406.0
DYD3_k127_3881617_1 PFAM NAD dependent epimerase dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000008557 219.0
DYD3_k127_3885673_0 ABC-type proline glycine betaine transport K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002049 273.0
DYD3_k127_3885673_1 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007805 282.0
DYD3_k127_3885673_2 Binding-protein-dependent transport system inner membrane component K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004337 248.0
DYD3_k127_3885673_3 DinB superfamily K18912 - 1.14.99.50 0.0000000000000000000000000000001193 134.0
DYD3_k127_3890829_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.1.33 0.0000000000000000000000000000000000000000000000003242 193.0
DYD3_k127_3890829_1 biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.00000000000000000001048 99.0
DYD3_k127_3899874_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000008714 194.0
DYD3_k127_3899874_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000726 164.0
DYD3_k127_3969849_0 Thioredoxin - - - 0.00002753 52.0
DYD3_k127_3978516_0 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000009544 235.0
DYD3_k127_3978516_1 PFAM Peptidase M23 - - - 0.0000000000000000000000000000000000000000000000001854 190.0
DYD3_k127_3978516_2 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000005373 181.0
DYD3_k127_3978516_3 PFAM Archaeal ATPase - - - 0.0000000000000000000000000000000000000000005479 176.0
DYD3_k127_3982486_0 Carboxyl transferase domain - - - 6.775e-230 739.0
DYD3_k127_3982486_1 Acyclic terpene utilisation family protein AtuA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 618.0
DYD3_k127_3982486_2 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000003278 205.0
DYD3_k127_3982486_3 enoyl-CoA hydratase isomerase family K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000003423 198.0
DYD3_k127_3982486_4 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000002302 150.0
DYD3_k127_3982486_5 - - - - 0.00000000000000000000000000000000978 141.0
DYD3_k127_3982486_6 DNA-templated transcription, initiation K03088 - - 0.0000000000000006752 91.0
DYD3_k127_3982486_7 - - - - 0.0001924 52.0
DYD3_k127_3986066_0 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 300.0
DYD3_k127_3986066_1 HEAT repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005715 280.0
DYD3_k127_3986066_2 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000006287 225.0
DYD3_k127_3986066_3 methyltransferase - - - 0.00000000000000000000000000000000000000000001412 177.0
DYD3_k127_3986066_4 HEAT repeats - - - 0.00000000000000000000000000000000000000000005855 181.0
DYD3_k127_3986066_5 COG1522 Transcriptional regulators - - - 0.00000000000000000000000000000001099 138.0
DYD3_k127_3986066_6 Protein of unknown function (DUF1207) - - - 0.0009288 51.0
DYD3_k127_3986956_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00122,K00335 - 1.17.1.9,1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 419.0
DYD3_k127_3986956_1 Sigma-70 region 2 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000001233 226.0
DYD3_k127_4005236_0 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008192 419.0
DYD3_k127_4005236_1 Thioesterase superfamily - - - 0.0000000000000000000000000000000000002154 161.0
DYD3_k127_4005236_2 - - - - 0.000002591 56.0
DYD3_k127_4014854_0 Phosphoenolpyruvate carboxykinase - - - 4e-237 747.0
DYD3_k127_4014854_1 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 546.0
DYD3_k127_4014854_2 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000005196 220.0
DYD3_k127_4014854_3 Nitrogen regulatory protein P-II K04751 - - 0.000000000000000000000000000000000000000000000000007882 183.0
DYD3_k127_4014854_4 methylglyoxal synthase K01734 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0008150,GO:0008152,GO:0008929,GO:0009058,GO:0009438,GO:0009987,GO:0016829,GO:0016835,GO:0016838,GO:0019242,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0071704,GO:1901576 4.2.3.3 0.0000000000002892 83.0
DYD3_k127_4014952_0 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 449.0
DYD3_k127_4014952_1 Hydrolases of the alpha beta superfamily K06889 - - 0.0000000000000000000000000000000000000000000000002754 191.0
DYD3_k127_4014952_2 PFAM Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000001798 156.0
DYD3_k127_4014952_3 Putative adhesin - - - 0.000000000000000000000278 107.0
DYD3_k127_4014952_5 EamA-like transporter family - - - 0.000002384 59.0
DYD3_k127_4014952_6 - - - - 0.000003562 53.0
DYD3_k127_4021174_0 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 314.0
DYD3_k127_4021174_1 antibiotic catabolic process K18235 - - 0.00000000000000000000000000000000000000000000000000003781 194.0
DYD3_k127_4048090_0 aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001507 287.0
DYD3_k127_4048090_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004308 293.0
DYD3_k127_405746_0 glutaminyl-tRNA K01886 - 6.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004679 541.0
DYD3_k127_4065863_0 Elongation factor SelB winged helix 3 K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 338.0
DYD3_k127_4065863_1 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000003856 59.0
DYD3_k127_4073937_0 DHH family - - - 0.000000000000000000000000000000000000000000000000000000000006551 228.0
DYD3_k127_4073937_1 beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000001393 203.0
DYD3_k127_4073937_2 Iron-sulphur cluster biosynthesis - - - 0.000000000000000000000000000000000000009513 149.0
DYD3_k127_4073937_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000008191 94.0
DYD3_k127_4073937_4 DHH family - - - 0.0000000000107 69.0
DYD3_k127_4074852_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003252 288.0
DYD3_k127_4078021_0 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004896 389.0
DYD3_k127_4078021_1 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000001112 221.0
DYD3_k127_4080003_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1167.0
DYD3_k127_4080003_1 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor K00311 GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 615.0
DYD3_k127_4080003_2 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000001164 146.0
DYD3_k127_4080003_3 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000009273 103.0
DYD3_k127_4080003_4 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0001644 55.0
DYD3_k127_4104066_0 PspA/IM30 family K03969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001247 271.0
DYD3_k127_4104066_1 - - - - 0.0000000000000004981 89.0
DYD3_k127_411394_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 371.0
DYD3_k127_4123642_0 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 377.0
DYD3_k127_4123642_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000007423 133.0
DYD3_k127_4123642_2 AntiSigma factor - - - 0.00000000000001335 84.0
DYD3_k127_4123642_3 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000004353 69.0
DYD3_k127_4123934_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 433.0
DYD3_k127_412655_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 392.0
DYD3_k127_412655_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004114 315.0
DYD3_k127_412655_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002388 285.0
DYD3_k127_412655_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000001554 254.0
DYD3_k127_412655_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000003016 162.0
DYD3_k127_412655_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000002017 122.0
DYD3_k127_412655_6 Preprotein translocase subunit K03210 - - 0.00000000000000003358 89.0
DYD3_k127_412655_7 Bifunctional sulfur carrier protein thiazole synthase K03154 - - 0.000000000002415 73.0
DYD3_k127_4128976_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 303.0
DYD3_k127_4128976_1 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 284.0
DYD3_k127_4156503_0 DHH family K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000002866 269.0
DYD3_k127_4156503_1 neurotransmitter:sodium symporter activity K03308 - - 0.000000000000000000000000000000000000000000000000000000004338 206.0
DYD3_k127_4160661_0 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 304.0
DYD3_k127_4160661_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000004839 175.0
DYD3_k127_4163936_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000168 280.0
DYD3_k127_4163936_1 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000002705 190.0
DYD3_k127_4177680_0 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000001978 149.0
DYD3_k127_4177680_1 COG3857 ATP-dependent nuclease, subunit B K16899 - 3.6.4.12 0.0000000002891 74.0
DYD3_k127_4178926_0 4Fe-4S binding domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000069 256.0
DYD3_k127_4178926_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 - 1.18.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000005405 262.0
DYD3_k127_4178926_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000004034 171.0
DYD3_k127_4178926_3 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000001524 116.0
DYD3_k127_4182326_0 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005591 541.0
DYD3_k127_4182326_1 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 537.0
DYD3_k127_4182326_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K19340 - - 0.000000000000000000000000000000000000000000000000000000000008802 219.0
DYD3_k127_4182326_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000007504 104.0
DYD3_k127_4189577_0 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 412.0
DYD3_k127_4193947_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 302.0
DYD3_k127_4193947_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000005787 144.0
DYD3_k127_4193947_2 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000007151 59.0
DYD3_k127_4199916_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 553.0
DYD3_k127_4199916_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000869 289.0
DYD3_k127_4207105_0 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 481.0
DYD3_k127_4207105_1 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000000000000000001695 99.0
DYD3_k127_4213774_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 2.487e-266 841.0
DYD3_k127_4213774_1 PFAM Flp Fap pilin component K02651 - - 0.0005921 45.0
DYD3_k127_4218784_0 glutamate catabolic process to 2-oxoglutarate K15371 - 1.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 341.0
DYD3_k127_4218784_1 Iron permease FTR1 K07243 - - 0.000000000000000000000000000000000000000000000000000000000008225 220.0
DYD3_k127_4221309_0 cobalamin-transporting ATPase activity K02014,K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 567.0
DYD3_k127_4221309_1 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007517 526.0
DYD3_k127_4221309_2 DinB superfamily - - - 0.0000000000000000000000000000001431 132.0
DYD3_k127_4221309_3 - - - - 0.00000000000000000000000007146 123.0
DYD3_k127_4231445_0 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 437.0
DYD3_k127_4231445_1 'Molybdopterin K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 306.0
DYD3_k127_4231445_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000003391 190.0
DYD3_k127_4231445_3 1,4-alpha-glucan branching enzyme activity K00700 - 2.4.1.18 0.0000000000000000005491 91.0
DYD3_k127_4231445_4 - - - - 0.0000000000000001138 90.0
DYD3_k127_4231445_5 PFAM glycoside hydrolase family 13 domain protein - - - 0.00000000003703 75.0
DYD3_k127_4239138_0 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000009395 254.0
DYD3_k127_4239138_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000007539 203.0
DYD3_k127_4239138_2 LemA family K03744 - - 0.0000000000000000006304 89.0
DYD3_k127_4239138_3 Acetyltransferase (GNAT) domain - - - 0.000002907 56.0
DYD3_k127_4240977_0 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 400.0
DYD3_k127_4240977_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000001234 56.0
DYD3_k127_4260466_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001621 244.0
DYD3_k127_4273527_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 550.0
DYD3_k127_4273527_1 Dehydrogenase K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000008395 173.0
DYD3_k127_4273527_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000007848 162.0
DYD3_k127_4273527_3 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000001835 61.0
DYD3_k127_4274785_0 COG2217 Cation transport ATPase K01534 - 3.6.3.3,3.6.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 527.0
DYD3_k127_4274785_1 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 430.0
DYD3_k127_4274785_2 PFAM AAA ATPase central domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009577 416.0
DYD3_k127_4274785_3 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007022 275.0
DYD3_k127_4274785_4 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007926 284.0
DYD3_k127_4274785_5 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000004582 96.0
DYD3_k127_4274785_6 Vitamin K-dependent gamma-carboxylase - - - 0.00000000000000001731 96.0
DYD3_k127_4316095_0 Oxidoreductase molybdopterin binding domain K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 408.0
DYD3_k127_4316095_1 Ferric reductase like transmembrane component - - - 0.00000000000000000000000000000000000000000000002054 182.0
DYD3_k127_4316095_2 NHL repeat - - - 0.0000000006307 70.0
DYD3_k127_4325507_0 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 522.0
DYD3_k127_4328993_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003184 291.0
DYD3_k127_4328993_1 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000971 184.0
DYD3_k127_4328993_2 Psort location Cytoplasmic, score K00945 - 2.7.4.25 0.0000000000000000000000000000007554 130.0
DYD3_k127_4328993_3 TrkA-C domain protein K07228 - - 0.0000000000000000000000767 101.0
DYD3_k127_4331280_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007537 448.0
DYD3_k127_4331280_1 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000002271 259.0
DYD3_k127_4335739_0 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007848 449.0
DYD3_k127_4335739_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000001423 248.0
DYD3_k127_4335739_2 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.0000000000000000000000000000000000000000000000000000000003486 207.0
DYD3_k127_4401322_0 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000008468 221.0
DYD3_k127_4401322_1 ABC-type tungstate transport system permease component-like protein K05772 - - 0.0000000000000000000000000000000000000000000000000000002805 218.0
DYD3_k127_4401322_2 Binding-protein-dependent transport system inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000005101 199.0
DYD3_k127_4401322_3 ABC transporter K01990 - - 0.0000000000000000000000000009764 117.0
DYD3_k127_4423188_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009209 328.0
DYD3_k127_4423188_1 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009435 337.0
DYD3_k127_4423188_2 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000394 233.0
DYD3_k127_4425123_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 369.0
DYD3_k127_4425123_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000003771 252.0
DYD3_k127_4425123_2 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000003053 176.0
DYD3_k127_4429154_0 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000003219 101.0
DYD3_k127_4448843_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000003168 271.0
DYD3_k127_4448843_2 COG0515 Serine threonine protein - - - 0.0000002158 56.0
DYD3_k127_4455474_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005119 372.0
DYD3_k127_4455474_1 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 330.0
DYD3_k127_4480439_0 - - - - 0.0000000000000000000001207 114.0
DYD3_k127_4481040_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 419.0
DYD3_k127_4481040_1 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008422 314.0
DYD3_k127_4493773_0 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 332.0
DYD3_k127_4493773_1 UPF0365 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009858 276.0
DYD3_k127_4507058_0 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 362.0
DYD3_k127_4507058_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 GO:0001676,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003824,GO:0003989,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006417,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009317,GO:0009329,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0017148,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032787,GO:0032991,GO:0034248,GO:0034249,GO:0042759,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:0097159,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:2000112,GO:2000113 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006102 328.0
DYD3_k127_4507058_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000005348 269.0
DYD3_k127_4507058_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000001846 75.0
DYD3_k127_4509523_0 Helix-hairpin-helix motif K14162 - 2.7.7.7 1.603e-272 872.0
DYD3_k127_4509523_1 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000004675 143.0
DYD3_k127_4509523_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K14161 - - 0.0000000000000000000000000248 118.0
DYD3_k127_4509523_3 methylamine metabolic process K15977 - - 0.000000000000000000000003786 114.0
DYD3_k127_4523691_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 302.0
DYD3_k127_4523691_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004869 288.0
DYD3_k127_4523691_2 XdhC Rossmann domain K07402 - - 0.000000000000000000000000000000000000000000000000000000000000004941 231.0
DYD3_k127_4523691_3 2 iron, 2 sulfur cluster binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000001521 240.0
DYD3_k127_4523691_4 TIGRFAM tungstate ABC transporter binding protein WtpA K15495 - - 0.0000000000000000000000000000000007892 150.0
DYD3_k127_4523691_5 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.0000000000000000000000009863 120.0
DYD3_k127_4529695_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000004042 213.0
DYD3_k127_4529695_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000000000000000000000003228 154.0
DYD3_k127_4529695_2 Thioredoxin-like domain K03671 - - 0.000000000000000000000000000000000000001442 150.0
DYD3_k127_4529695_3 Glyoxalase-like domain K05606 - 5.1.99.1 0.0000000000000000000000000000000415 130.0
DYD3_k127_4529695_4 - - - - 0.00000173 57.0
DYD3_k127_4538043_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000958 449.0
DYD3_k127_4538043_1 PFAM OstA family protein K09774 - - 0.00000002498 66.0
DYD3_k127_4538043_2 Penicillin-binding protein 1A K05366 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.4.1.129,3.4.16.4 0.000002295 54.0
DYD3_k127_4539490_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 456.0
DYD3_k127_4539490_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000002747 188.0
DYD3_k127_4539843_0 P-loop ATPase protein family K06958,K07102 GO:0000166,GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006022,GO:0006040,GO:0006082,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 329.0
DYD3_k127_4539843_1 endonuclease activity - - - 0.0000000000000000000000000000007991 126.0
DYD3_k127_4559559_0 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000001346 184.0
DYD3_k127_4559559_1 Glycosyl transferase family 2 K08301 - - 0.000000000000000000000000000000000000000003536 172.0
DYD3_k127_4559559_2 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000002422 173.0
DYD3_k127_4559559_3 Protein of unknown function DUF86 - - - 0.000000000003848 73.0
DYD3_k127_4559559_4 Nucleotidyltransferase domain K07076 - - 0.0000000299 60.0
DYD3_k127_4567046_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003871,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0042085,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050667,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.14 1.655e-269 854.0
DYD3_k127_4567046_2 Lactonase, 7-bladed beta-propeller - - - 0.0000000000000000005398 99.0
DYD3_k127_4568005_0 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000478 303.0
DYD3_k127_4568005_1 cellulase activity K20276 - - 0.0000021 57.0
DYD3_k127_4574203_0 protein kinase activity - - - 0.0000000000000000000000005258 109.0
DYD3_k127_4616458_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 569.0
DYD3_k127_4616458_1 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.0000000000000000000000000000000000002972 160.0
DYD3_k127_4625043_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006365 587.0
DYD3_k127_465622_0 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008878 448.0
DYD3_k127_465622_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005662 381.0
DYD3_k127_465622_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000007303 105.0
DYD3_k127_4660079_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007118 345.0
DYD3_k127_4660079_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000002026 266.0
DYD3_k127_4660079_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000000000000000000000000000000000007707 226.0
DYD3_k127_4660079_3 Domain of unknown function (DUF2520) - - - 0.000000000000000000001245 107.0
DYD3_k127_4670060_0 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 328.0
DYD3_k127_4670060_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000000000000000000000000000000000000000000000000005579 245.0
DYD3_k127_4670060_2 pyrroloquinoline quinone binding - - - 0.0000004986 51.0
DYD3_k127_4689738_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001221 284.0
DYD3_k127_4689738_1 Histidine biosynthesis bifunctional protein HisIE K11755 - 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000005188 194.0
DYD3_k127_4689738_2 Histidine biosynthesis protein K01814 - 5.3.1.16 0.000000000000000000000000000000000000000000000001566 182.0
DYD3_k127_4689738_3 Membrane - - - 0.0000000000000004936 87.0
DYD3_k127_4710704_0 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 464.0
DYD3_k127_4710704_1 - - - - 0.000000000002366 72.0
DYD3_k127_4712375_0 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 452.0
DYD3_k127_4712375_1 serine-type endopeptidase activity - - - 0.0000000000006248 72.0
DYD3_k127_4732970_0 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 390.0
DYD3_k127_4732970_1 Thioredoxin-like domain K03672 - 1.8.1.8 0.000000000000000000000000000000000001029 156.0
DYD3_k127_4745967_0 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001546 266.0
DYD3_k127_4745967_1 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000002797 163.0
DYD3_k127_4745967_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000001224 104.0
DYD3_k127_4745967_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117,K03646 - - 0.00000001251 64.0
DYD3_k127_4747211_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 425.0
DYD3_k127_4754278_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000001037 179.0
DYD3_k127_4754278_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000297 152.0
DYD3_k127_4769680_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008909 531.0
DYD3_k127_4769680_1 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007999 334.0
DYD3_k127_4769680_2 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000001281 257.0
DYD3_k127_4769680_3 Psort location Extracellular, score K21471 - - 0.000000000000000000000000001169 126.0
DYD3_k127_4769680_4 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000329 68.0
DYD3_k127_4777395_0 Na H antiporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 513.0
DYD3_k127_4777395_1 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000003576 163.0
DYD3_k127_4780064_0 NlpC/P60 family - - - 0.00000000000000000000000005149 114.0
DYD3_k127_4780064_1 Iron permease FTR1 K07243 - - 0.0000000000000000000003734 110.0
DYD3_k127_4793939_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 394.0
DYD3_k127_4793939_1 KR domain K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000001637 210.0
DYD3_k127_4793939_2 Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis K06208 - 5.4.99.5 0.0000000000000000000000004006 113.0
DYD3_k127_4793939_3 Histidine kinase - - - 0.0000000000000000000001005 114.0
DYD3_k127_4815435_0 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000009178 246.0
DYD3_k127_4815435_1 Carbon-nitrogen hydrolase K03820 - - 0.0000000000000000000000000000000000000000000000000000000007706 228.0
DYD3_k127_4815435_2 Aminotransferase class-V - - - 0.000000000000000000000000000002094 127.0
DYD3_k127_4817238_0 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 378.0
DYD3_k127_4817238_1 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000415 292.0
DYD3_k127_4817238_2 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000001477 186.0
DYD3_k127_4825930_0 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000004785 235.0
DYD3_k127_4825930_1 Phosphoglycerate kinase K00927 - 2.7.2.3 0.00000000000000000000000000000000001189 141.0
DYD3_k127_4825930_2 FtsX-like permease family K02004 - - 0.000000000000000000008504 94.0
DYD3_k127_4825930_3 Preprotein translocase SecG subunit K03075 - - 0.00000000001037 72.0
DYD3_k127_4845993_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000659 429.0
DYD3_k127_4845993_1 Glycosyltransferase family 9 (heptosyltransferase) K12982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 312.0
DYD3_k127_4845993_2 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000000000000000002054 160.0
DYD3_k127_4845993_3 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000006 168.0
DYD3_k127_4845993_4 Peptidase M50B-like - - - 0.00000000000000000000000000000000000002486 151.0
DYD3_k127_4845993_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000004214 149.0
DYD3_k127_4845993_6 PFAM phenylacetic acid catabolic family protein K02611 - 1.14.13.149 0.0000000000000000000000000000000001489 143.0
DYD3_k127_4845993_7 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000002119 123.0
DYD3_k127_4845993_8 metal-sulfur cluster biosynthetic enzyme - - - 0.0000007653 56.0
DYD3_k127_4848622_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 588.0
DYD3_k127_4848622_1 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 438.0
DYD3_k127_4848622_2 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 386.0
DYD3_k127_4848622_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000071 94.0
DYD3_k127_4848622_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000009778 56.0
DYD3_k127_4869991_0 Type IV pilus assembly protein PilM; K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 366.0
DYD3_k127_4869991_1 Fimbrial assembly protein (PilN) - - - 0.00000000000000000006896 98.0
DYD3_k127_4869991_2 - - - - 0.0000000000000202 82.0
DYD3_k127_4869991_3 Pilus assembly protein, PilO K02664 - - 0.00000000002283 72.0
DYD3_k127_4869991_4 AMIN domain K02666 - - 0.00000000009879 72.0
DYD3_k127_4869991_5 pilus assembly protein PilW - - - 0.000006359 57.0
DYD3_k127_4870025_0 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000000000000000000000000000243 214.0
DYD3_k127_4870025_1 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.00000000000000000000000000000000000000000000000000001442 199.0
DYD3_k127_4870025_2 NADP oxidoreductase coenzyme F420-dependent - - - 0.000000000000000000000000000000000000000002576 165.0
DYD3_k127_4870025_3 Magnesium chelatase, subunit ChlI K07391 - - 0.0000000000000000000000000000000000000001486 157.0
DYD3_k127_4870025_4 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000009119 163.0
DYD3_k127_4871442_0 elongation factor G K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 524.0
DYD3_k127_4874540_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 376.0
DYD3_k127_4874540_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000002917 86.0
DYD3_k127_4891423_0 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000001285 156.0
DYD3_k127_4891423_1 Pfam Transposase IS66 - - - 0.00000000000000000000000000000003901 130.0
DYD3_k127_4891423_2 sister chromatid segregation K04797 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0016272,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032991,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0002106 53.0
DYD3_k127_489350_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.655e-225 707.0
DYD3_k127_489350_1 O-acyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 322.0
DYD3_k127_489350_2 Lytic transglycosylase catalytic K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004711 254.0
DYD3_k127_489350_3 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000001071 151.0
DYD3_k127_489350_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000008519 153.0
DYD3_k127_489350_5 FMN binding K03612 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000002532 127.0
DYD3_k127_489350_7 - - - - 0.0000000000124 73.0
DYD3_k127_4922212_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 3.863e-234 741.0
DYD3_k127_4922212_1 uridine kinase K00876 - 2.7.1.48 0.00000000000000000000000000000000000000000000000001146 196.0
DYD3_k127_4922212_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.0000000000000000000000001033 113.0
DYD3_k127_4928165_0 epimerase K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 315.0
DYD3_k127_4928165_1 Protein of unknown function (DUF1722) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003222 305.0
DYD3_k127_4928165_2 mismatched DNA binding K03555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004233 256.0
DYD3_k127_4928165_3 Calcineurin-like phosphoesterase K03547 - - 0.000000000000000000000000000000000002079 153.0
DYD3_k127_4928165_4 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0008694 53.0
DYD3_k127_4929258_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 387.0
DYD3_k127_493290_0 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000004482 214.0
DYD3_k127_493290_1 PFAM Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000000000001354 195.0
DYD3_k127_493290_3 Protein of unknown function (DUF3307) - - - 0.00001089 57.0
DYD3_k127_4940304_0 NmrA-like family K19267 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000004709 213.0
DYD3_k127_4940304_1 cAMP biosynthetic process - - - 0.000000000000000000000000000003454 135.0
DYD3_k127_4940996_0 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000002508 242.0
DYD3_k127_4940996_1 Belongs to the UPF0403 family - - - 0.000000000000000000000000000000000000000000000000009158 196.0
DYD3_k127_4943251_0 Arginosuccinate synthase K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 493.0
DYD3_k127_4943251_1 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 378.0
DYD3_k127_4943350_0 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008128 330.0
DYD3_k127_4943350_1 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000007033 138.0
DYD3_k127_4970732_0 Formylmethanofuran dehydrogenase subunit A K00200 GO:0003674,GO:0003824,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0044237,GO:0044281 1.2.7.12 9.171e-208 660.0
DYD3_k127_4970732_1 Pyridine nucleotide-disulphide oxidoreductase K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 529.0
DYD3_k127_4970732_2 Molybdopterin oxidoreductase K00201 - 1.2.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 469.0
DYD3_k127_4970732_3 Catalyzes the hydrolysis of methenyl-H(4)MPT( ) to 5- formyl-H(4)MPT K01499 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009987,GO:0015947,GO:0016787,GO:0016810,GO:0016814,GO:0018759,GO:0019238,GO:0043446,GO:0044237,GO:0044424,GO:0044464,GO:0071704 3.5.4.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 346.0
DYD3_k127_4970732_4 Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT) K00672 - 2.3.1.101 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 338.0
DYD3_k127_4970732_5 formylmethanofuran dehydrogenase activity K00202 GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0044237,GO:0044281 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001181 285.0
DYD3_k127_4970732_6 GXGXG motif K00202 - 1.2.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000007271 269.0
DYD3_k127_4970732_7 Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT) K00672 - 2.3.1.101 0.0000000000000000000000000000000000000000000004666 168.0
DYD3_k127_4970732_8 PFAM molydopterin dinucleotide-binding region K00203,K00336 - 1.2.7.12,1.6.5.3 0.000000000000000006621 89.0
DYD3_k127_4970732_9 Belongs to the RimK family K05827,K05844 - 6.3.2.43 0.00003015 56.0
DYD3_k127_4970834_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000006612 195.0
DYD3_k127_4970834_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000006391 193.0
DYD3_k127_4972011_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 393.0
DYD3_k127_4972011_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000003716 149.0
DYD3_k127_4972011_2 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000006239 108.0
DYD3_k127_4972011_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000005388 96.0
DYD3_k127_4998322_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 9.309e-243 765.0
DYD3_k127_5030953_0 Leishmanolysin - - - 0.00000000511 71.0
DYD3_k127_5031722_0 kinase activity K07154 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000001468 250.0
DYD3_k127_5031722_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000001482 219.0
DYD3_k127_5031722_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000003656 192.0
DYD3_k127_503578_0 Putative inner membrane exporter, YdcZ K09936 - - 0.0000000000000000001267 95.0
DYD3_k127_503578_1 Sulfotransferase - - - 0.000000000007001 75.0
DYD3_k127_503578_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.00000189 50.0
DYD3_k127_5039884_0 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 497.0
DYD3_k127_5070477_0 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 570.0
DYD3_k127_5070477_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 322.0
DYD3_k127_5070477_2 uridine kinase K00855 - 2.7.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003161 282.0
DYD3_k127_5070477_3 Phosphoribulokinase / Uridine kinase family K00855 - 2.7.1.19 0.000000000000000000000000000000000000000000000000000000000009848 221.0
DYD3_k127_5074506_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 506.0
DYD3_k127_5074506_1 - - - - 0.0000000000000000000003571 109.0
DYD3_k127_5074506_2 RNA pseudouridylate synthase K06177,K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23,5.4.99.28,5.4.99.29 0.00001094 48.0
DYD3_k127_5114467_0 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000546 210.0
DYD3_k127_5114467_1 PFAM t-RNA-binding domain protein K06878 - - 0.000000000000000000000000000000000004512 145.0
DYD3_k127_5114467_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000005219 135.0
DYD3_k127_5114467_3 Golgi phosphoprotein 3 (GPP34) - - - 0.0000000000000000000000000000000164 142.0
DYD3_k127_5122987_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K01817 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20,5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 512.0
DYD3_k127_5122987_1 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000001954 186.0
DYD3_k127_5122987_2 Belongs to the TrpF family K01817 - 5.3.1.24 0.0001026 55.0
DYD3_k127_513745_0 PFAM V-type ATPase 116 kDa K02123 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 313.0
DYD3_k127_513745_1 PFAM H transporting two-sector ATPase C subunit K02124 - - 0.00000000000000001931 83.0
DYD3_k127_5137477_0 Ftsk_gamma K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 612.0
DYD3_k127_5140981_0 SIS domain K03271 - 5.3.1.28 0.00000000000000000000000000000000000000634 165.0
DYD3_k127_5140981_1 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.0000000000000000000000000000000000004536 158.0
DYD3_k127_5140981_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000006329 145.0
DYD3_k127_5157599_0 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000001133 254.0
DYD3_k127_5157599_1 Belongs to the PdaD family K02626 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000236 243.0
DYD3_k127_5157599_2 ABC transporter transmembrane region K18889 - - 0.0000000000000000000000000000000000000000000574 165.0
DYD3_k127_5157599_3 Ferric uptake regulator family K09825 - - 0.00000000000000000000000003692 120.0
DYD3_k127_5187536_0 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000006674 186.0
DYD3_k127_5187536_1 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000004763 165.0
DYD3_k127_5191828_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 475.0
DYD3_k127_5191828_1 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000557 233.0
DYD3_k127_5191828_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000003333 59.0
DYD3_k127_5217884_0 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 5.811e-208 671.0
DYD3_k127_5221358_0 Belongs to the RimK family K05827,K05844 - 6.3.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000002568 260.0
DYD3_k127_5221358_1 ATP:dephospho-CoA triphosphoribosyl transferase K05966 - 2.4.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000002052 258.0
DYD3_k127_5221358_2 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000003066 181.0
DYD3_k127_523284_0 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 411.0
DYD3_k127_523284_1 DNA polymerase X family K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 392.0
DYD3_k127_523284_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000717 210.0
DYD3_k127_523284_3 endonuclease activity - - - 0.0000000000000000000000000000000000001562 153.0
DYD3_k127_523284_4 helix_turn_helix gluconate operon transcriptional repressor K07978 - - 0.000000000000007209 86.0
DYD3_k127_5235232_0 Single-stranded DNA-binding protein K03111 - - 0.00000000000000000000000000000000000000003634 157.0
DYD3_k127_5235232_1 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000007004 124.0
DYD3_k127_5235232_2 Universal bacterial protein YeaZ K14742 - - 0.00000000000000000000007101 107.0
DYD3_k127_5235232_3 PFAM Peptidoglycan-binding lysin domain - - - 0.00000000000002365 87.0
DYD3_k127_5244142_0 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 401.0
DYD3_k127_5244142_1 cellulase activity - - - 0.00000000000000000000000000000000002304 146.0
DYD3_k127_5244142_2 DNA-binding transcription factor activity - - - 0.0000001104 61.0
DYD3_k127_5244142_3 - - - - 0.0000001312 64.0
DYD3_k127_5244142_4 cellulose binding - - - 0.00004464 56.0
DYD3_k127_5244142_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0009281 50.0
DYD3_k127_525423_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 529.0
DYD3_k127_525423_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000008427 194.0
DYD3_k127_525423_2 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000004664 189.0
DYD3_k127_525423_3 Periplasmic or secreted lipoprotein - - - 0.0000000000002986 79.0
DYD3_k127_5259454_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 489.0
DYD3_k127_5259454_1 Domain present in carbohydrate binding proteins and sugar hydrolses K07218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 320.0
DYD3_k127_5259454_2 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.000000000000000000000000000000000000000007034 162.0
DYD3_k127_5259454_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000004621 164.0
DYD3_k127_5259454_4 - K19341 - - 0.00000000000000000000000000000000003177 153.0
DYD3_k127_5267905_0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009388 377.0
DYD3_k127_5267905_1 NhaP-type Na H and K H - - - 0.0000000000000000000000000002041 129.0
DYD3_k127_5267905_2 Belongs to the P(II) protein family K02806,K04752 - - 0.00000000000000000000000003573 112.0
DYD3_k127_5267905_3 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000002902 115.0
DYD3_k127_5292591_0 xanthine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 544.0
DYD3_k127_5292591_1 MafB19-like deaminase K01487 - 3.5.4.3 0.0000000000000000000000000000000000000000000000004451 181.0
DYD3_k127_5303813_0 NUDIX domain - - - 0.00000000000000000000000000000000000000006014 162.0
DYD3_k127_5303813_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000003646 86.0
DYD3_k127_5303813_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000009772 61.0
DYD3_k127_5307256_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 604.0
DYD3_k127_5307256_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000004481 238.0
DYD3_k127_5307256_2 lipopolysaccharide transport protein B ATP-binding component of ABC superfamily K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000002684 73.0
DYD3_k127_5309411_0 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000003954 261.0
DYD3_k127_5309411_1 Cytidylyltransferase-like - - - 0.0000000000000000000000000000000000000000007506 174.0
DYD3_k127_5309411_2 PFAM Sodium hydrogen exchanger family - - - 0.00000000000000000000000000000000000000002899 160.0
DYD3_k127_5312420_0 choline dehydrogenase activity - - - 0.0000000000000000000000000000000000000000001134 170.0
DYD3_k127_5312420_2 Uncharacterized protein conserved in bacteria (DUF2252) - - - 0.0000004972 63.0
DYD3_k127_5314067_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 539.0
DYD3_k127_5325687_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001814 286.0
DYD3_k127_5325687_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000001045 218.0
DYD3_k127_5336850_0 Sulfotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000022 272.0
DYD3_k127_5336850_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000002888 216.0
DYD3_k127_5336850_2 transferase activity, transferring glycosyl groups K07011,K13659 - 2.4.1.264 0.00000000000000000000000000000000000005098 164.0
DYD3_k127_5336850_3 PFAM Sulfotransferase - - - 0.0000000000000000000000002575 121.0
DYD3_k127_5336850_4 Polysaccharide biosynthesis protein K03328,K16695 - - 0.000000488 63.0
DYD3_k127_5355380_0 PFAM ATPase associated with various cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 325.0
DYD3_k127_5355380_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000001058 235.0
DYD3_k127_5355380_2 VWA domain containing CoxE-like protein - - - 0.00000000000000000000000000000000000000000000000000000000003864 228.0
DYD3_k127_5355380_3 Aminotransferase class-III K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000001684 146.0
DYD3_k127_5355380_4 symporter activity K11928 - - 0.0000000000000000000000000000000001621 140.0
DYD3_k127_5355380_5 lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.00000000000000000000000000000002637 132.0
DYD3_k127_5361768_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000553 185.0
DYD3_k127_5381777_0 AAA domain, putative AbiEii toxin, Type IV TA system K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001803 291.0
DYD3_k127_5381777_1 ABC 3 transport family K09816 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005777 261.0
DYD3_k127_5381777_2 PFAM periplasmic solute binding protein K09815 - - 0.000000000000000000000000000000000000000000000000002211 194.0
DYD3_k127_5394479_0 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000000000000000000004397 160.0
DYD3_k127_5395253_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 8.603e-302 965.0
DYD3_k127_5395253_1 Uncharacterized conserved protein (COG2071) K09166 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 295.0
DYD3_k127_5395253_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000005716 199.0
DYD3_k127_5395253_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000006821 182.0
DYD3_k127_5395253_4 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000258 182.0
DYD3_k127_5395253_5 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000002502 68.0
DYD3_k127_5412198_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 482.0
DYD3_k127_5412198_1 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 383.0
DYD3_k127_5412198_2 peptidyl-tyrosine sulfation - - - 0.0008714 52.0
DYD3_k127_5424813_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 394.0
DYD3_k127_5424813_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 384.0
DYD3_k127_5424813_2 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000001226 261.0
DYD3_k127_5424813_3 Cell cycle protein K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000233 267.0
DYD3_k127_5424813_4 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000002326 146.0
DYD3_k127_5424813_5 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000805 91.0
DYD3_k127_550199_0 Methyltransferase domain - - - 0.00000000000000000000000003378 118.0
DYD3_k127_550199_1 PFAM von Willebrand factor type A - - - 0.0000000000000003628 89.0
DYD3_k127_5510980_0 Glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000001904 137.0
DYD3_k127_5510980_1 polysaccharide deacetylase - - - 0.000000000000002679 81.0
DYD3_k127_5510980_2 Insulinase (Peptidase family M16) - - - 0.0008097 47.0
DYD3_k127_5513066_0 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000000000000000000000000000005084 248.0
DYD3_k127_5513066_1 lyase activity - - - 0.00000000000000000000000006396 125.0
DYD3_k127_5513066_2 DinB superfamily - - - 0.0000000000000000000002612 111.0
DYD3_k127_5513066_3 Protein involved in meta-pathway of phenol degradation - - - 0.00000001928 65.0
DYD3_k127_5522961_0 Glycosyltransferase family 87 K13671 - - 0.00000000000000001338 96.0
DYD3_k127_5522961_1 SMART von Willebrand factor type A K16259 - - 0.0000000000000005178 87.0
DYD3_k127_5571852_0 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 326.0
DYD3_k127_5571852_1 Sporulation related domain - - - 0.000000000000000541 93.0
DYD3_k127_5576054_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 370.0
DYD3_k127_5576054_1 COG0530 Ca2 Na antiporter K07301 - - 0.000000000000000000000000002813 117.0
DYD3_k127_5576054_2 PIN domain - - - 0.000000001271 66.0
DYD3_k127_5576054_3 toxin-antitoxin pair type II binding - - - 0.00000006674 57.0
DYD3_k127_5576054_4 Protein of unknown function (DUF1015) - - - 0.0000003269 53.0
DYD3_k127_5594497_0 mismatched DNA binding K03555 - - 0.0000000000000000000000000000000000000000000000000000000000003718 229.0
DYD3_k127_5598988_0 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001466 292.0
DYD3_k127_5598988_1 SMART PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001899 273.0
DYD3_k127_5598988_2 Sugar nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000231 235.0
DYD3_k127_5598988_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000002943 217.0
DYD3_k127_5599959_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 379.0
DYD3_k127_561219_0 Polysaccharide biosynthesis protein K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 475.0
DYD3_k127_561219_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 398.0
DYD3_k127_561219_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002251 278.0
DYD3_k127_561219_3 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000001317 196.0
DYD3_k127_561219_4 RNA pseudouridylate synthase K06178,K06183 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.19,5.4.99.22 0.000000000000000000000000000000000000000000000000000056 198.0
DYD3_k127_561219_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000002576 160.0
DYD3_k127_561219_6 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000001637 143.0
DYD3_k127_561219_7 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000756 66.0
DYD3_k127_5616466_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005037 392.0
DYD3_k127_5616466_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000004874 198.0
DYD3_k127_5616466_2 transmembrane transport - - - 0.0002478 46.0
DYD3_k127_5638451_0 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000001509 216.0
DYD3_k127_5638451_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000001866 183.0
DYD3_k127_5639261_0 Low temperature requirement - - - 0.000000000000000000000000000000000000000000000007746 190.0
DYD3_k127_5639261_1 DinB superfamily - - - 0.000000000000000000001003 99.0
DYD3_k127_5639261_2 - - - - 0.0002451 48.0
DYD3_k127_5656479_0 neurotransmitter:sodium symporter activity K03308,K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 457.0
DYD3_k127_5656479_1 Belongs to the peptidase M50B family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 318.0
DYD3_k127_5656479_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000002769 271.0
DYD3_k127_5656479_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000714 262.0
DYD3_k127_5656479_4 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.000000000000000000000007319 118.0
DYD3_k127_5656479_5 Zincin-like metallopeptidase - - - 0.000000000000000000004459 107.0
DYD3_k127_5656479_6 Alpha beta hydrolase - - - 0.00000000001424 68.0
DYD3_k127_5668419_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000005773 183.0
DYD3_k127_5668419_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000006245 168.0
DYD3_k127_5668419_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000389 141.0
DYD3_k127_566972_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004844 404.0
DYD3_k127_5677340_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000000000000000007858 196.0
DYD3_k127_5677340_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000002905 172.0
DYD3_k127_5677340_2 Outer membrane lipoprotein - - - 0.0000000000000000000000000003507 126.0
DYD3_k127_5677340_3 Belongs to the ompA family K03640 - - 0.000000000000000000000000009668 116.0
DYD3_k127_568048_0 PFAM class II aldolase adducin family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 296.0
DYD3_k127_568048_1 TonB-dependent Receptor Plug - - - 0.000000000000000000000000000000000000000003116 180.0
DYD3_k127_568048_2 NHL repeat - - - 0.000000000000000000000000000001156 140.0
DYD3_k127_568048_3 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000003253 80.0
DYD3_k127_5684105_0 - - - - 0.000000000000000000000000000000000000000000001995 175.0
DYD3_k127_5684105_1 Putative adhesin - - - 0.00000000000209 78.0
DYD3_k127_5731332_0 Short chain fatty acid transporter K02106 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 372.0
DYD3_k127_5731332_1 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01029 GO:0001666,GO:0006950,GO:0008150,GO:0009628,GO:0036293,GO:0050896,GO:0070482 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005127 290.0
DYD3_k127_5731332_2 Acyl-CoA dehydrogenase, C-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000001104 267.0
DYD3_k127_5731332_3 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01027,K01028 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000007651 268.0
DYD3_k127_5758128_0 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 5.31e-218 687.0
DYD3_k127_5758128_1 Tetratricopeptide repeat - - - 0.0000000000000000000000001405 114.0
DYD3_k127_5763394_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009214 316.0
DYD3_k127_5763394_1 STAS domain K04749 - - 0.00000000000000000000000001993 109.0
DYD3_k127_5763394_2 Histidine kinase-like ATPase domain - - - 0.00000000000000000000000402 112.0
DYD3_k127_5801050_0 Protein of unknown function (DUF512) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 358.0
DYD3_k127_5801050_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 314.0
DYD3_k127_5801050_2 Tetratricopeptide repeat - - - 0.00000000001924 76.0
DYD3_k127_5801050_3 Putative prokaryotic signal transducing protein - - - 0.0004973 50.0
DYD3_k127_5801893_0 aromatic amino acid beta-eliminating lyase threonine aldolase K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003381 283.0
DYD3_k127_5801893_1 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000009752 137.0
DYD3_k127_5801893_2 Thioredoxin-like K02199 - - 0.00000000000000000000000003077 124.0
DYD3_k127_5801893_3 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000004849 83.0
DYD3_k127_5801893_4 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 0.0008795 53.0
DYD3_k127_5817625_0 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity K00819,K00821 GO:0003674,GO:0003824,GO:0004587,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.6.1.11,2.6.1.13,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052 542.0
DYD3_k127_5817625_1 major pilin protein fima - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 393.0
DYD3_k127_5830156_0 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 377.0
DYD3_k127_5842052_0 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000003164 228.0
DYD3_k127_5842052_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000004221 86.0
DYD3_k127_5865387_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000002722 140.0
DYD3_k127_5865387_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000685 121.0
DYD3_k127_5865387_2 Methyladenine glycosylase K01246 - 3.2.2.20 0.000001389 53.0
DYD3_k127_5874891_0 Von Willebrand factor type A K16257 - - 0.000000000000000001651 98.0
DYD3_k127_5874891_1 - - - - 0.000002056 54.0
DYD3_k127_5899619_0 arginine K01478 - 3.5.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000001054 272.0
DYD3_k127_5899619_1 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000000000000000000002288 197.0
DYD3_k127_5931466_1 ABC-type spermidine putrescine transport systems, ATPase components K02017 - 3.6.3.29 0.0000007424 56.0
DYD3_k127_5938782_0 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002293 269.0
DYD3_k127_5938782_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000003606 246.0
DYD3_k127_5938782_2 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000006344 186.0
DYD3_k127_5938782_3 Polysaccharide deacetylase - - - 0.0000001107 64.0
DYD3_k127_5942405_0 - - - - 0.00000000000000000000008116 113.0
DYD3_k127_5957634_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 344.0
DYD3_k127_5957634_1 Cytidine and deoxycytidylate deaminase zinc-binding region - - - 0.000000000000000000000000000000000000000000000000000000000000005866 224.0
DYD3_k127_595859_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008575 533.0
DYD3_k127_595859_1 Integral membrane protein TerC family K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 389.0
DYD3_k127_595859_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000124 236.0
DYD3_k127_595859_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000003115 220.0
DYD3_k127_5958945_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 407.0
DYD3_k127_5958945_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008766,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0047480,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.10 0.000000000000000000000000000000000000000002966 177.0
DYD3_k127_5998117_0 synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004682 433.0
DYD3_k127_5998117_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 353.0
DYD3_k127_5998117_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.000000000000000000000003944 113.0
DYD3_k127_5998117_3 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.0000000001016 66.0
DYD3_k127_6019354_0 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000007403 224.0
DYD3_k127_6019354_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000001513 212.0
DYD3_k127_6019354_2 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000008411 157.0
DYD3_k127_6019354_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000005641 71.0
DYD3_k127_6037672_0 Acetohydroxy acid isomeroreductase, NADPH-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001581 254.0
DYD3_k127_6037672_1 Belongs to the ompA family K03286 - - 0.000000004925 68.0
DYD3_k127_6037672_2 Protein kinase domain K12132 - 2.7.11.1 0.0006895 50.0
DYD3_k127_6040822_0 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004209 297.0
DYD3_k127_6040822_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000002195 132.0
DYD3_k127_6043022_0 Catalyzes the conversion of dihydroorotate to orotate K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308 364.0
DYD3_k127_6043022_1 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.0000000000000000000000000000000000005998 147.0
DYD3_k127_6048142_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000944 332.0
DYD3_k127_6057508_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000288 113.0
DYD3_k127_6057508_1 Involved in formation and maintenance of cell shape K03570 - - 0.000003689 56.0
DYD3_k127_6058104_0 Beta-eliminating lyase K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 458.0
DYD3_k127_6058104_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 357.0
DYD3_k127_6058104_2 NmrA-like family - - - 0.0000001156 61.0
DYD3_k127_6074502_0 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002021 280.0
DYD3_k127_6079612_0 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790,K03825,K06718 GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031248,GO:0031365,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234 2.3.1.128,2.3.1.178 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 295.0
DYD3_k127_6079612_1 Haemolysin-III related K11068 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002372 254.0
DYD3_k127_6079612_10 Cupin 2, conserved barrel domain protein K19547 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016853,GO:0016860,GO:0016863,GO:0016999,GO:0017000,GO:0017144,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0046872,GO:0046914,GO:0050897 5.3.3.19 0.000000000004225 72.0
DYD3_k127_6079612_2 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000000000006844 244.0
DYD3_k127_6079612_3 Sortase and related acyltransferases K03823 - 2.3.1.183 0.000000000000000000000000000000000000000000000000000000001799 205.0
DYD3_k127_6079612_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000009819 195.0
DYD3_k127_6079612_5 Putative glycolipid-binding K09957 - - 0.000000000000000000000000000000000000000000002978 179.0
DYD3_k127_6079612_6 oxidation-reduction process K09022 - 3.5.99.10 0.00000000000000000000000000000000000000001079 165.0
DYD3_k127_6079612_7 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000003861 132.0
DYD3_k127_6079612_8 Predicted membrane protein (DUF2214) K08983 - - 0.00000000000000000000000000000001068 132.0
DYD3_k127_6079612_9 aminoglycoside hydroxyurea antibiotic resistance kinase K04343 - 2.7.1.72 0.0000000000000000000000000000003137 130.0
DYD3_k127_6084860_0 Cys/Met metabolism PLP-dependent enzyme K01739 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009092,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0017144,GO:0019279,GO:0019343,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071265,GO:0071266,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 404.0
DYD3_k127_6084860_1 Transposase IS200 like - - - 0.0008459 49.0
DYD3_k127_6099315_0 PFAM OPT oligopeptide transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007489 522.0
DYD3_k127_6112395_0 Anthranilate synthase component I, N terminal region K01657,K13503 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 455.0
DYD3_k127_6112395_1 ATPase activity K01990 - - 0.0000000000000000000000000000000000000000000000000000000005124 209.0
DYD3_k127_6112395_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008425,GO:0008757,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016740,GO:0016741,GO:0030580,GO:0032259,GO:0042180,GO:0042181,GO:0043333,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000217 172.0
DYD3_k127_6112395_3 domain, Protein - - - 0.0000000000000000000000000000001442 142.0
DYD3_k127_6113539_0 Protein of unknown function (DUF933) K06942 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000664 422.0
DYD3_k127_6113539_1 peroxidase activity K00435 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007407 255.0
DYD3_k127_6113539_2 - - - - 0.0000000000000000000000000000000000001939 148.0
DYD3_k127_6113539_3 PFAM TM2 domain - - - 0.000000000000000000000000000004265 127.0
DYD3_k127_6113539_4 - - - - 0.00000000000000000000000000005702 117.0
DYD3_k127_6113539_5 IMP dehydrogenase activity - - - 0.0000000000000000000000002399 121.0
DYD3_k127_611666_0 Methylene-tetrahydromethanopterin dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003167 265.0
DYD3_k127_611666_1 ATP-grasp domain - - - 0.00000000000000000000000000000001141 136.0
DYD3_k127_615772_0 Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005018 444.0
DYD3_k127_615772_1 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 381.0
DYD3_k127_615772_2 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 316.0
DYD3_k127_6170798_0 secondary active sulfate transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007072 455.0
DYD3_k127_6170798_2 protein conserved in bacteria K09859 - - 0.00002776 57.0
DYD3_k127_619389_0 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 443.0
DYD3_k127_619389_1 Starch synthase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 314.0
DYD3_k127_6200495_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 2.333e-208 664.0
DYD3_k127_6200495_1 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000007317 98.0
DYD3_k127_6216367_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 500.0
DYD3_k127_6216367_1 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000001234 84.0
DYD3_k127_6216385_0 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 377.0
DYD3_k127_6216385_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006438 328.0
DYD3_k127_6246856_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 580.0
DYD3_k127_6246856_1 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000002556 124.0
DYD3_k127_6246856_2 - - - - 0.00000000002318 77.0
DYD3_k127_6267597_0 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000778 398.0
DYD3_k127_6267597_1 peptidyl-tyrosine sulfation - - - 0.0003187 54.0
DYD3_k127_6282213_0 Lamin Tail Domain - - - 0.00000000003067 76.0
DYD3_k127_6286991_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007834 431.0
DYD3_k127_6286991_1 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000093 271.0
DYD3_k127_6286991_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000002098 243.0
DYD3_k127_6286991_3 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02236,K02278,K02506,K02654,K10966 - 3.4.23.43 0.00000000000000000000000000000000000000000000000003382 192.0
DYD3_k127_6286991_4 FAD dependent oxidoreductase K00285,K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19,1.4.5.1 0.0000000000000000000000000000000000000000002824 182.0
DYD3_k127_6286991_5 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218,K03437 - 2.1.1.185 0.000000000000000000000000000000007098 146.0
DYD3_k127_6286991_6 Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state - - - 0.000000000000000000000000001014 125.0
DYD3_k127_6286991_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000004358 84.0
DYD3_k127_6287037_0 Binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000001397 145.0
DYD3_k127_6287037_1 DAK2 domain fusion protein YloV K07030 - - 0.000000000000000000000001456 109.0
DYD3_k127_6287037_2 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000004009 98.0
DYD3_k127_6287037_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000002532 91.0
DYD3_k127_6287037_4 - - - - 0.000000000000000009757 94.0
DYD3_k127_6288770_0 aerobic electron transport chain K00425,K08738 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 538.0
DYD3_k127_6288770_1 Proto-chlorophyllide reductase 57 kD subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 325.0
DYD3_k127_6288770_2 Rubrerythrin K22405 - 1.6.3.4 0.00000000000000000000000007126 121.0
DYD3_k127_6290960_0 Na dependent nucleoside transporter K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 434.0
DYD3_k127_6290960_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 312.0
DYD3_k127_6290960_2 PFAM Phosphomethylpyrimidine kinase type-1 K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000002435 251.0
DYD3_k127_629983_0 - - - - 0.00000000000000000000000000000000000000000000000000000006498 215.0
DYD3_k127_631879_0 lysine 2,3-aminomutase activity K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009156 423.0
DYD3_k127_631879_1 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 307.0
DYD3_k127_631879_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001984 287.0
DYD3_k127_631879_3 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001181 257.0
DYD3_k127_631879_4 OsmC-like protein - - - 0.00000000003579 66.0
DYD3_k127_631879_5 peptidyl-tyrosine sulfation - - - 0.00007297 55.0
DYD3_k127_6333806_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 352.0
DYD3_k127_6333806_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000002743 180.0
DYD3_k127_6333806_2 HEAT repeats - - - 0.00000000000000000000000000000000000000003351 172.0
DYD3_k127_6333806_3 Calcium/calmodulin dependent protein kinase II association domain - - - 0.000000000000002753 89.0
DYD3_k127_6334284_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993,K16922 - - 0.000000000000000000000000000000000000000000000000000000000000000000002422 264.0
DYD3_k127_6334284_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000001336 98.0
DYD3_k127_6334284_2 protein kinase activity - - - 0.0000007738 57.0
DYD3_k127_6334284_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0003492 53.0
DYD3_k127_6334581_0 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.11.1.15 0.00000000000000000000000000000000000000000000000000000002975 200.0
DYD3_k127_6334581_1 PFAM O-methyltransferase family 2 - - - 0.000000000000000000000000000000000000003099 166.0
DYD3_k127_6334581_2 COG1651 Protein-disulfide isomerase K21990 - - 0.000000000000000000000000000007482 136.0
DYD3_k127_6334581_3 AAA domain - - - 0.00000000000000001962 96.0
DYD3_k127_6342793_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009969 572.0
DYD3_k127_6342793_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004091 274.0
DYD3_k127_6342793_2 Ferrous iron transport protein B K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000006027 158.0
DYD3_k127_6342793_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.000000000000000000000001429 109.0
DYD3_k127_6342793_4 - - - - 0.00000000000000000000001538 117.0
DYD3_k127_6344922_0 Aminotransferase class I and II K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009116 469.0
DYD3_k127_6344922_1 - - - - 0.000000000000000000000000000000000000000000009125 169.0
DYD3_k127_6344922_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000003763 141.0
DYD3_k127_6348507_0 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000001128 251.0
DYD3_k127_6348507_1 - - - - 0.00000000000000000000000000000000000000005241 163.0
DYD3_k127_6351879_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006917 545.0
DYD3_k127_6351879_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004879 511.0
DYD3_k127_6351879_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 324.0
DYD3_k127_6351879_3 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000001211 156.0
DYD3_k127_6351879_4 Cytochrome c - - - 0.00000000000000000003428 102.0
DYD3_k127_635455_0 NAD+ synthase (glutamine-hydrolyzing) activity K01916 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 372.0
DYD3_k127_635455_1 Hypothetical methyltransferase K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 358.0
DYD3_k127_635455_2 helix_turn_helix, Arsenical Resistance Operon Repressor K03892,K21903 - - 0.0000000000000000000002075 102.0
DYD3_k127_6356528_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 468.0
DYD3_k127_6356528_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 477.0
DYD3_k127_6356528_2 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate - - - 0.00000000000000000000000000004739 120.0
DYD3_k127_6356528_3 Carbamoyl-phosphate synthase L chain, ATP binding domain - - - 0.00000000000005123 82.0
DYD3_k127_6361836_0 Acyl-protein synthetase, LuxE K06046 - 6.2.1.19 0.000000000000000000000000000000000000000000000000000000007063 215.0
DYD3_k127_6361836_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000003534 165.0
DYD3_k127_6361836_2 phosphatidate phosphatase activity K00901,K01096,K19302 - 2.7.1.107,3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.000000000000000000000000000000000003593 150.0
DYD3_k127_6361836_3 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.00000009798 65.0
DYD3_k127_6361836_4 3-beta hydroxysteroid dehydrogenase isomerase - - - 0.000005166 48.0
DYD3_k127_6361836_5 - - - - 0.00004689 55.0
DYD3_k127_6371441_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000002503 189.0
DYD3_k127_6371441_1 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000007544 97.0
DYD3_k127_6371441_2 Control of competence regulator ComK, YlbF/YmcA - - - 0.000000000000003702 83.0
DYD3_k127_6375033_0 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 343.0
DYD3_k127_6375033_1 ornithine cyclodeaminase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001892 269.0
DYD3_k127_6401969_0 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000003021 248.0
DYD3_k127_6401969_1 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000001389 203.0
DYD3_k127_6405885_0 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 310.0
DYD3_k127_6405885_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000005806 185.0
DYD3_k127_6405885_2 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.00000000000000000000000000000000001874 144.0
DYD3_k127_6414935_0 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005062 294.0
DYD3_k127_6414935_1 Iron-binding zinc finger CDGSH type K05710 - - 0.0000000333 59.0
DYD3_k127_643704_0 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 377.0
DYD3_k127_643704_1 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000001674 193.0
DYD3_k127_643704_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000000000000000000005425 173.0
DYD3_k127_643704_3 DinB family - - - 0.000000000000000000002075 110.0
DYD3_k127_643704_4 - - - - 0.0000000000000000006149 91.0
DYD3_k127_643704_5 - - - - 0.0000000000000001672 89.0
DYD3_k127_643704_6 PIN domain K07065 - - 0.0000000000000007912 82.0
DYD3_k127_6439855_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 323.0
DYD3_k127_6443935_0 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 370.0
DYD3_k127_6443935_1 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001489 258.0
DYD3_k127_6443935_2 PspA/IM30 family K03969 - - 0.0000000000000000000000000000000000000008578 154.0
DYD3_k127_6448321_0 Periplasmic binding protein K02016 - - 0.00000000000000000000000000000000000000000000000000000000000001164 231.0
DYD3_k127_6448321_1 UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000003145 115.0
DYD3_k127_6448321_2 Cupin 2, conserved barrel domain protein - - - 0.0000000000000007296 88.0
DYD3_k127_6448321_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000006606 64.0
DYD3_k127_6451890_0 PFAM Alcohol dehydrogenase K00008 - 1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 390.0
DYD3_k127_6451890_1 membrane - - - 0.000000000000000000000003027 103.0
DYD3_k127_6460206_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 342.0
DYD3_k127_6460206_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 311.0
DYD3_k127_6460206_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 306.0
DYD3_k127_6460206_3 TIGRFAM Glucose-1-phosphate cytidylyltransferase K00978 - 2.7.7.33 0.00000000461 58.0
DYD3_k127_6470522_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000006589 220.0
DYD3_k127_6470522_1 2 iron, 2 sulfur cluster binding K07302 - 1.3.99.16 0.00000000000000000000000000000000000003484 158.0
DYD3_k127_6470522_2 CO dehydrogenase flavoprotein C-terminal domain K13479 - 1.17.1.4 0.0000000000000000000000000000000000005258 156.0
DYD3_k127_6474098_0 Protein conserved in bacteria - - - 0.000000000000000000000000005943 127.0
DYD3_k127_6486767_0 PD-(D/E)XK nuclease superfamily - - - 4.566e-262 839.0
DYD3_k127_6486767_1 UvrD/REP helicase N-terminal domain - - - 8.08e-255 812.0
DYD3_k127_6486767_2 Helix-turn-helix XRE-family like proteins K21498 - - 0.000000000000000000000000000000000000000004283 156.0
DYD3_k127_6486767_3 Plasmid maintenance system killer protein K07334 - - 0.00000000000000000417 100.0
DYD3_k127_6491748_0 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 340.0
DYD3_k127_6491748_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000001253 94.0
DYD3_k127_6530058_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000008481 263.0
DYD3_k127_6530058_1 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.0000000000001148 81.0
DYD3_k127_6535189_0 PFAM Alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 404.0
DYD3_k127_6535189_1 Peptidase family M1 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006342 272.0
DYD3_k127_6548868_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 467.0
DYD3_k127_6552331_0 radical SAM domain protein - - - 2.61e-205 648.0
DYD3_k127_6552331_1 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006815 592.0
DYD3_k127_6552331_2 - - - - 0.00000000000000000000001143 118.0
DYD3_k127_6557894_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 400.0
DYD3_k127_6557894_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000007241 138.0
DYD3_k127_6570135_0 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 341.0
DYD3_k127_6570135_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000003739 149.0
DYD3_k127_6585495_0 M42 glutamyl aminopeptidase K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 373.0
DYD3_k127_6585495_1 FAD dependent oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000899 304.0
DYD3_k127_6585495_2 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009951 246.0
DYD3_k127_6585495_3 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000006318 228.0
DYD3_k127_6585495_4 Putative zinc-finger - - - 0.0000000113 59.0
DYD3_k127_6585495_5 Iron-sulphur cluster biosynthesis - - - 0.000003014 53.0
DYD3_k127_6587033_0 Surface antigen K07277,K07278 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 333.0
DYD3_k127_6587033_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 295.0
DYD3_k127_6587033_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000005055 233.0
DYD3_k127_6587033_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000001303 222.0
DYD3_k127_6598561_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 474.0
DYD3_k127_6598561_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 372.0
DYD3_k127_6598561_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001908 280.0
DYD3_k127_6598561_3 PFAM Appr-1-p processing domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001135 226.0
DYD3_k127_6601342_0 PFAM glycosyl transferase family 35 K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001434 302.0
DYD3_k127_6601342_1 Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). This compound is used as substrate for the biosynthesis of the low-molecular thiol compound ergothioneine K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000002271 198.0
DYD3_k127_6601342_2 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000005337 181.0
DYD3_k127_6604515_0 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 461.0
DYD3_k127_6604515_1 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003773 258.0
DYD3_k127_6620599_0 penicillin amidase K01434 - 3.5.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 379.0
DYD3_k127_6620599_1 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 353.0
DYD3_k127_6620599_2 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000007789 224.0
DYD3_k127_6620599_3 - - - - 0.00000000000000000000000009007 121.0
DYD3_k127_6620599_4 NifU-like domain - - - 0.0000000000000005191 93.0
DYD3_k127_6629899_0 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 - - 1.717e-214 671.0
DYD3_k127_6629899_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008245 479.0
DYD3_k127_6629899_2 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 370.0
DYD3_k127_6629899_3 SUF system FeS assembly protein, NifU family K04488 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0010467,GO:0016740,GO:0016782,GO:0019538,GO:0019725,GO:0030003,GO:0036455,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0097428,GO:0098771,GO:1901564 - 0.00000000000000000000000000000000000000004954 158.0
DYD3_k127_6629899_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000004748 126.0
DYD3_k127_6629899_5 COGs COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase K05710 - - 0.000000000000000000000006737 104.0
DYD3_k127_6645979_0 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002178 279.0
DYD3_k127_6645979_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000002352 234.0
DYD3_k127_6645979_2 Part of the ABC transporter FtsEX involved in K09811 - - 0.0000000000000000000000000000000000000000000000000000003483 211.0
DYD3_k127_6645979_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000002497 199.0
DYD3_k127_6646178_0 Peptidase family S58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 364.0
DYD3_k127_6646178_1 Protein of unknown function (DUF2892) - - - 0.0000000004285 65.0
DYD3_k127_6647997_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007172 449.0
DYD3_k127_6647997_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 355.0
DYD3_k127_6647997_2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.00000000000000000000003683 103.0
DYD3_k127_6647997_3 BioY family K03523 - - 0.0000000000000906 76.0
DYD3_k127_6653773_0 transcription factor binding K15836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004252 511.0
DYD3_k127_6653773_1 PFAM Pentapeptide repeats (8 copies) - - - 0.0000000000002508 78.0
DYD3_k127_6661281_0 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004642 329.0
DYD3_k127_6661281_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008607 297.0
DYD3_k127_6661281_2 - - - - 0.00000000000000469 89.0
DYD3_k127_6661281_3 CAAX protease self-immunity - - - 0.0000000000002409 83.0
DYD3_k127_6680221_0 CDGSH-type zinc finger. Function unknown. - - - 0.000000000000000000000000000000000000000000000000000000000004375 227.0
DYD3_k127_6680221_1 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000002697 210.0
DYD3_k127_6680221_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000001369 160.0
DYD3_k127_6680221_3 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000472 135.0
DYD3_k127_6688927_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0000150,GO:0000166,GO:0000287,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009432,GO:0009605,GO:0009628,GO:0009650,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030145,GO:0030554,GO:0031668,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042148,GO:0042221,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 479.0
DYD3_k127_6691226_0 neurotransmitter:sodium symporter activity K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000168 288.0
DYD3_k127_6691226_1 PHP domain protein K07053 - 3.1.3.97 0.000000000000000000000000000000000000000001489 169.0
DYD3_k127_6691226_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000000001453 116.0
DYD3_k127_6693923_0 ABC transporter K02017,K02018 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007129 311.0
DYD3_k127_6693923_1 Transglycosylase associated protein - - - 0.000000000000000000000008519 117.0
DYD3_k127_6693923_2 Alanine racemase, N-terminal domain K20757 - 4.3.1.27 0.000000000000000000001437 98.0
DYD3_k127_6696105_0 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000002489 101.0
DYD3_k127_6696105_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00002982 53.0
DYD3_k127_6700589_0 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007419 298.0
DYD3_k127_6700589_1 DoxX K15977 - - 0.000000000000000000000000000000002421 133.0
DYD3_k127_6700589_2 Cold shock protein domain K03704 - - 0.00000000000000000000000000008603 117.0
DYD3_k127_6700589_3 Ribonuclease B OB domain K03704 - - 0.00000000000000000000000008992 114.0
DYD3_k127_6700589_4 Histidine kinase - - - 0.00000000000000000000006617 104.0
DYD3_k127_6712168_0 Belongs to the enoyl-CoA hydratase isomerase family K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 400.0
DYD3_k127_6712168_1 Protein of unknown function (DUF402) K09145 - - 0.000000000001242 80.0
DYD3_k127_671652_0 - - - - 0.00003515 52.0
DYD3_k127_6721103_0 A G-specific adenine glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 316.0
DYD3_k127_6721103_1 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000003512 146.0
DYD3_k127_6723545_0 DEAD DEAH box helicase K03724 - - 0.0 1139.0
DYD3_k127_6723940_0 COG3653 N-acyl-D-aspartate D-glutamate deacylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000843 417.0
DYD3_k127_6723940_1 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 289.0
DYD3_k127_6723940_2 Domain of unknown function (DUF4349) - - - 0.00005327 53.0
DYD3_k127_6726119_0 Isocitrate lyase K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 548.0
DYD3_k127_6726119_1 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000000000004041 213.0
DYD3_k127_6726119_2 PFAM ATP-binding region, ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000002139 188.0
DYD3_k127_6726119_3 endonuclease activity - - - 0.0000418 49.0
DYD3_k127_6761334_0 Aconitase C-terminal domain K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005699 306.0
DYD3_k127_67687_0 Threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000472 167.0
DYD3_k127_67687_1 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000002955 158.0
DYD3_k127_67687_2 PFAM peptidase S58 DmpA - - - 0.0000000000000000003836 99.0
DYD3_k127_6771736_0 PAS fold K10715,K20974 - 2.7.13.3 0.00000000000000000000000000000009581 139.0
DYD3_k127_6771736_1 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0000000002171 64.0
DYD3_k127_6772178_0 Potential Queuosine, Q, salvage protein family - - - 0.00000000000000000000000000000000000000000000006767 184.0
DYD3_k127_6772178_1 COGs COG1853 Conserved protein domain typically associated with flavoprotein oxygenase DIM6 NTAB family - - - 0.000000000000000000000000000000000000000002299 174.0
DYD3_k127_6772178_2 Major Facilitator Superfamily K08223 - - 0.00000000000000000000000000000000734 140.0
DYD3_k127_6793592_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 307.0
DYD3_k127_6793592_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001721 261.0
DYD3_k127_6793592_2 Belongs to the peptidase S8 family K13276 - - 0.000000000000000000000000000000000000000000000000001014 210.0
DYD3_k127_6793592_3 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.000000000000000000000000000000000000000003726 175.0
DYD3_k127_6793592_4 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.00000000000000000000000000000007519 141.0
DYD3_k127_6793592_5 LytR cell envelope-related transcriptional attenuator - - - 0.000000000009587 73.0
DYD3_k127_6803791_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000095 500.0
DYD3_k127_6803791_1 Formiminotransferase domain, N-terminal subdomain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 375.0
DYD3_k127_6803791_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000857 265.0
DYD3_k127_6803791_3 Peptidase family M20/M25/M40 K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000008533 253.0
DYD3_k127_6803791_4 imidazolonepropionase K01468 - 3.5.2.7 0.000000000000000000000000000000000000000001037 177.0
DYD3_k127_6803791_5 Formiminotransferase-cyclodeaminase - - - 0.0000000000000000000000000000000002432 145.0
DYD3_k127_6803791_6 Metal-sensitive transcriptional repressor K21600 - - 0.00001622 51.0
DYD3_k127_6808962_0 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 402.0
DYD3_k127_6811783_0 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000002131 242.0
DYD3_k127_6846448_0 Methylmalonyl-CoA mutase K01848,K11942 - 5.4.99.13,5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007688 332.0
DYD3_k127_6846448_1 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000004589 166.0
DYD3_k127_6851225_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 471.0
DYD3_k127_6851225_1 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 401.0
DYD3_k127_6851225_2 PFAM NAD-dependent epimerase dehydratase K15856 - 1.1.1.281 0.00000000000000000000000000000000000000000000000000000002504 215.0
DYD3_k127_6851225_3 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000627 192.0
DYD3_k127_6866034_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 403.0
DYD3_k127_6866034_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000009506 201.0
DYD3_k127_6879379_0 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008602 285.0
DYD3_k127_6879379_1 PFAM peptidase S58, DmpA - - - 0.0000000000000000000000000000000000000000000000000000000000000004748 232.0
DYD3_k127_6879379_2 Peptidase C26 K07010 - - 0.000000000000000000000000000000000000000000000001895 184.0
DYD3_k127_6879379_3 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000001176 139.0
DYD3_k127_6888282_0 UDP binding domain K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 474.0
DYD3_k127_6888282_1 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016043,GO:0016829,GO:0016849,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0022607,GO:0034214,GO:0042802,GO:0043170,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0051259,GO:0061799,GO:0065003,GO:0071704,GO:0071840,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.6.1.17 0.0000000000000000000000000000000000000000000001547 176.0
DYD3_k127_6888282_2 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000004459 143.0
DYD3_k127_6893064_0 WD40-like Beta Propeller Repeat - - - 9.103e-246 794.0
DYD3_k127_6893064_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 293.0
DYD3_k127_6893064_2 translation release factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000005469 237.0
DYD3_k127_6893064_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000006866 184.0
DYD3_k127_6893064_4 iron-sulfur cluster assembly K07400,K13628 - - 0.00000000000000000000000000000000000000008479 169.0
DYD3_k127_6893064_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000005959 148.0
DYD3_k127_6893064_6 Ferric uptake regulator family K03711 - - 0.000000000000000000000000000000000001447 145.0
DYD3_k127_6893064_7 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307,K14392 - - 0.0000000000000000000000000008914 130.0
DYD3_k127_6893064_8 PFAM membrane protein of K08972 - - 0.0000000000000000000000007026 109.0
DYD3_k127_6893559_0 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 374.0
DYD3_k127_6893559_1 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000006156 210.0
DYD3_k127_6893559_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000003216 159.0
DYD3_k127_6907141_0 Acyl-CoA dehydrogenase, N-terminal domain - - - 2.667e-220 703.0
DYD3_k127_6907141_1 Membrane - - - 0.00000000000000000000000000000000000000000005983 182.0
DYD3_k127_6907141_2 NAD(P)H quinone oxidoreductase, PIG3 family - - - 0.0000000000000000000000000000002788 126.0
DYD3_k127_6907141_3 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000001449 102.0
DYD3_k127_6910310_0 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008833 270.0
DYD3_k127_6910310_1 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000002526 198.0
DYD3_k127_6910310_2 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000002966 190.0
DYD3_k127_6910310_3 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000001224 146.0
DYD3_k127_6910310_4 TonB C terminal K03832 - - 0.00000000000000000000000004887 116.0
DYD3_k127_6910310_5 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.00000000000000000000000005364 116.0
DYD3_k127_6915473_0 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004919 284.0
DYD3_k127_6915473_1 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0000001751 63.0
DYD3_k127_6915581_0 LytB protein K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 469.0
DYD3_k127_6915581_1 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000001464 198.0
DYD3_k127_6927381_0 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004328 542.0
DYD3_k127_6927381_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00615,K00616 - 2.2.1.1,2.2.1.2 0.0000000000000000000000000000000000000000000000000608 191.0
DYD3_k127_6927381_2 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000006135 199.0
DYD3_k127_6930339_0 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 415.0
DYD3_k127_6930339_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 302.0
DYD3_k127_6930339_2 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001218 267.0
DYD3_k127_6930339_3 PFAM carbon monoxide dehydrogenase subunit G K09386 - - 0.000000000000000001533 98.0
DYD3_k127_6938912_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 394.0
DYD3_k127_6938912_1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000003093 192.0
DYD3_k127_6938912_2 MgtC family K07507 - - 0.0000000000000000000000000006762 123.0
DYD3_k127_694743_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 6.545e-206 659.0
DYD3_k127_694743_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 374.0
DYD3_k127_694743_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000789 290.0
DYD3_k127_694743_3 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001663 285.0
DYD3_k127_694743_4 Gas vesicle - - - 0.0000000277 67.0
DYD3_k127_6958798_0 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000006494 188.0
DYD3_k127_6958798_1 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000001516 168.0
DYD3_k127_6958798_2 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000002224 84.0
DYD3_k127_6963153_0 Zinc carboxypeptidase - - - 1.789e-204 674.0
DYD3_k127_6963153_1 PFAM Cys Met metabolism pyridoxal-phosphate- dependent protein K01739,K01758,K01761 - 2.5.1.48,4.4.1.1,4.4.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 588.0
DYD3_k127_6963153_2 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 402.0
DYD3_k127_6963153_3 Haloacid dehalogenase-like hydrolase K02566 - - 0.0000000000000000000000000000000000000000000000000001036 199.0
DYD3_k127_6963153_4 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000002477 182.0
DYD3_k127_6963153_5 transporter K07238 - - 0.00000000000000000000000000000000000002105 149.0
DYD3_k127_6963153_6 ZIP Zinc transporter K07238 - - 0.000000000000000000000000000005737 121.0
DYD3_k127_6994379_0 Male sterility protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 310.0
DYD3_k127_6994379_1 peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 302.0
DYD3_k127_6994379_2 Proline dehydrogenase K00318 GO:0000166,GO:0003674,GO:0003824,GO:0004657,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006560,GO:0006562,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016491,GO:0016645,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 - 0.0000000000000000000000000000000000000000000000000000000000186 230.0
DYD3_k127_7016436_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 601.0
DYD3_k127_7016436_1 Biopolymer transport protein ExbD/TolR K03559 - - 0.000000000000000004429 89.0
DYD3_k127_7033733_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.052e-271 862.0
DYD3_k127_7033733_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 447.0
DYD3_k127_7033733_2 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000004105 258.0
DYD3_k127_7033733_3 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000009461 89.0
DYD3_k127_7033733_4 Cold shock K03704 - - 0.00000000000000004352 90.0
DYD3_k127_7043504_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004797 307.0
DYD3_k127_7059385_0 methylisocitrate lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002759 271.0
DYD3_k127_7059385_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 2.1.1.63 0.0000000000000000000000000004418 113.0
DYD3_k127_7076979_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000006334 238.0
DYD3_k127_7076979_1 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000001056 198.0
DYD3_k127_7076979_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000001498 170.0
DYD3_k127_709765_0 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000008257 290.0
DYD3_k127_709765_1 - - - - 0.0000000000000000000000000000000000000000000007165 181.0
DYD3_k127_709765_2 DNA-templated transcription, initiation K02405 - - 0.0000000000000000000000000000000000000003792 169.0
DYD3_k127_7106696_0 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 369.0
DYD3_k127_7106696_1 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 306.0
DYD3_k127_7106696_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005664 283.0
DYD3_k127_7106696_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000008466 205.0
DYD3_k127_7106696_4 Potassium transporter peripheral membrane component K03499 - - 0.0000000000000000000000000000000000000000000008384 173.0
DYD3_k127_713248_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000001039 136.0
DYD3_k127_713248_1 Prokaryotic N-terminal methylation motif - - - 0.000000000000007562 85.0
DYD3_k127_713248_2 Type II transport protein GspH K08084 - - 0.00001027 58.0
DYD3_k127_7132605_0 Domain of unknown function (DUF3536) - - - 5.393e-236 770.0
DYD3_k127_7132605_1 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008015 328.0
DYD3_k127_7141246_0 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000000000000000116 215.0
DYD3_k127_7141246_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000001739 188.0
DYD3_k127_7158014_0 Domain of unknown function (DUF5117) - - - 2.11e-288 913.0
DYD3_k127_7158014_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008037 314.0
DYD3_k127_7158014_2 zinc transporter K07238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007757 262.0
DYD3_k127_7192015_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008669 422.0
DYD3_k127_7192015_1 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008411 342.0
DYD3_k127_7192015_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 331.0
DYD3_k127_7192015_3 - - - - 0.00000000000000000000000000000000005868 153.0
DYD3_k127_7213645_0 Parallel beta-helix repeats - - - 0.000000000000000001974 100.0
DYD3_k127_7213645_1 Sigma-70 region 2 K03088 - - 0.000003976 60.0
DYD3_k127_743345_0 diguanylate cyclase K13069,K21085 - 2.7.7.65 0.000000000000000000000000000007825 130.0
DYD3_k127_769785_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 597.0
DYD3_k127_769785_1 Belongs to the thiolase family K00626,K02615 - 2.3.1.174,2.3.1.223,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000719 496.0
DYD3_k127_769785_2 Enoyl-CoA hydratase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000001217 223.0
DYD3_k127_769785_3 PFAM GCN5-related N-acetyltransferase - - - 0.0001622 52.0
DYD3_k127_79730_0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009589 521.0
DYD3_k127_79730_1 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000006441 180.0
DYD3_k127_79730_2 amidohydrolase K01465 - 3.5.2.3 0.00004701 55.0
DYD3_k127_816962_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 481.0
DYD3_k127_816962_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002255 259.0
DYD3_k127_828980_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000001625 212.0
DYD3_k127_828980_1 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000005521 176.0
DYD3_k127_834487_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1065.0
DYD3_k127_834487_1 DNA topoisomerase II activity K02469 - 5.99.1.3 1.521e-315 988.0
DYD3_k127_834487_2 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001719 289.0
DYD3_k127_834487_3 endonuclease activity - - - 0.0000000000000000000000662 108.0
DYD3_k127_849993_0 AcrB/AcrD/AcrF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 332.0
DYD3_k127_854601_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 1.942e-203 640.0
DYD3_k127_854601_1 YCII-related domain - - - 0.00000000000000000000000000000000000000000000001804 175.0
DYD3_k127_854601_2 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000000000000000000002966 167.0
DYD3_k127_854601_3 Ankyrin repeat - - - 0.0006926 49.0
DYD3_k127_855234_0 cAMP biosynthetic process K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000852 274.0
DYD3_k127_855234_1 - - - - 0.00000221 58.0
DYD3_k127_855234_2 Tetratricopeptide repeat - - - 0.00001595 58.0
DYD3_k127_856107_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001955 250.0
DYD3_k127_856107_1 ATPase family associated with various cellular activities (AAA) - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000001955 197.0
DYD3_k127_856107_2 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000001752 139.0
DYD3_k127_861729_0 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 373.0
DYD3_k127_861729_1 Esterase K07214 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005915 314.0
DYD3_k127_871962_0 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008643 471.0
DYD3_k127_871962_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000001114 142.0
DYD3_k127_876483_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 8.864e-208 654.0
DYD3_k127_876483_1 4 iron, 4 sulfur cluster binding - - - 0.00000000000000000000000000000000000003445 149.0
DYD3_k127_889853_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 601.0
DYD3_k127_913168_0 Peptidase, M16 K07263 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 3.951e-225 720.0
DYD3_k127_918274_0 Lactonase, 7-bladed beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 297.0
DYD3_k127_918274_1 methylamine metabolic process K03885,K16937 - 1.6.99.3,1.8.5.2 0.0000000000000000000000007138 115.0
DYD3_k127_918274_2 amino acid transport K02030 - - 0.000000000003819 71.0
DYD3_k127_923047_0 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000007616 215.0
DYD3_k127_923047_1 PFAM GGDEF domain containing protein - - - 0.0001605 54.0
DYD3_k127_943016_0 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 324.0
DYD3_k127_943016_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003881 273.0
DYD3_k127_943016_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000001748 261.0
DYD3_k127_945479_0 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000002711 248.0
DYD3_k127_945479_1 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000012 239.0
DYD3_k127_949400_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 6.163e-214 676.0
DYD3_k127_949400_1 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000004209 55.0
DYD3_k127_96370_0 Transporter associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 376.0
DYD3_k127_96370_1 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 325.0
DYD3_k127_975660_0 inositol monophosphate 1-phosphatase activity K01092,K05602 - 3.1.3.15,3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000002667 256.0
DYD3_k127_975660_1 Peptidase family M28 - - - 0.0000000000000000000000000000000000000001482 170.0
DYD3_k127_975660_3 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000007528 102.0
DYD3_k127_975660_4 YCII-related domain - - - 0.000000001158 59.0