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Overview

ID MAG00990
Name DYD3_bin.7
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Patescibacteriia
Order SG8-24
Family DYFX01
Genus DYFX01
Species
Assembly information
Completeness (%) 98.37
Contamination (%) 2.71
GC content (%) 66.0
N50 (bp) 33,310
Genome size (bp) 1,255,352

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes893

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1024006_0 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000005619 168.0
DYD3_k127_1024006_1 TIGRFAM DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000001718 154.0
DYD3_k127_1024006_2 Methyltransferase - - - 0.000000009939 64.0
DYD3_k127_1024006_3 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000007482 53.0
DYD3_k127_1236299_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007235 506.0
DYD3_k127_1236299_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006559 431.0
DYD3_k127_1236299_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000007321 262.0
DYD3_k127_1236299_3 Protein of unknown function (DUF3494) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001008 262.0
DYD3_k127_1236299_4 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000006409 167.0
DYD3_k127_1236299_5 - - - - 0.0000000001217 63.0
DYD3_k127_1236299_6 Diguanylate cyclase - - - 0.000003043 61.0
DYD3_k127_1236299_7 Protein of unknown function (DUF3137) - - - 0.00001791 56.0
DYD3_k127_1565813_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000002137 121.0
DYD3_k127_1565813_1 Ferredoxin - - - 0.000000000000001298 80.0
DYD3_k127_1565813_2 EamA-like transporter family - - - 0.00000001394 66.0
DYD3_k127_1565813_3 Sugar-specific transcriptional regulator TrmB - - - 0.000001546 59.0
DYD3_k127_1622949_0 PFAM UMUC domain protein DNA-repair protein K02346,K03502 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007839 370.0
DYD3_k127_1622949_1 exonuclease of the beta-lactamase fold involved in RNA K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008273 356.0
DYD3_k127_1622949_10 Major Facilitator - - - 0.000000000000000001618 98.0
DYD3_k127_1622949_11 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000093 79.0
DYD3_k127_1622949_12 Belongs to the AAA ATPase family - - - 0.000000000001244 76.0
DYD3_k127_1622949_13 - - - - 0.00000000001478 76.0
DYD3_k127_1622949_14 Domain of unknown function (DUF378) K09779 - - 0.00000003783 59.0
DYD3_k127_1622949_15 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.0000002324 63.0
DYD3_k127_1622949_16 sister chromatid segregation - - - 0.000008418 55.0
DYD3_k127_1622949_17 Fic/DOC family - - - 0.00003095 56.0
DYD3_k127_1622949_2 beta-glucosidase activity K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 346.0
DYD3_k127_1622949_3 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 292.0
DYD3_k127_1622949_4 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000779 269.0
DYD3_k127_1622949_5 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000008805 225.0
DYD3_k127_1622949_6 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000000001114 181.0
DYD3_k127_1622949_7 VIT family - - - 0.000000000000000000000000000000003332 138.0
DYD3_k127_1622949_8 MazG nucleotide pyrophosphohydrolase - - - 0.0000000000000000000000000000005967 126.0
DYD3_k127_1622949_9 belongs to the sigma-70 factor family - - - 0.00000000000000000002486 102.0
DYD3_k127_1772994_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000717 300.0
DYD3_k127_1772994_1 PFAM AAA ATPase central domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009201 286.0
DYD3_k127_1772994_10 Zincin-like metallopeptidase - - - 0.0000000000000000000008971 99.0
DYD3_k127_1772994_11 Peptidase family M23 K21472 - - 0.00000000000000000009982 100.0
DYD3_k127_1772994_12 bis(5'-adenosyl)-triphosphatase activity K01518 - 3.6.1.17 0.0000000000000000008581 94.0
DYD3_k127_1772994_13 C-terminal domain of CHU protein family - - - 0.00000000000000002072 98.0
DYD3_k127_1772994_14 YGGT family - - - 0.0000000000000006154 87.0
DYD3_k127_1772994_15 alginic acid biosynthetic process K20276 - - 0.0000000000000007548 91.0
DYD3_k127_1772994_16 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000009983 91.0
DYD3_k127_1772994_17 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.00000000000000568 87.0
DYD3_k127_1772994_18 pilus organization - - - 0.0000000000002486 84.0
DYD3_k127_1772994_19 Glyoxalase-like domain - - - 0.00000000001362 70.0
DYD3_k127_1772994_2 cell division ATP-binding protein FtsE K09812 GO:0000910,GO:0005575,GO:0005623,GO:0005886,GO:0007049,GO:0008150,GO:0008356,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0032506,GO:0042173,GO:0043937,GO:0043938,GO:0044085,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051301,GO:0065007,GO:0070297,GO:0071840,GO:0071944,GO:0090529,GO:1902531 - 0.00000000000000000000000000000000000000000000000000000000000000000001195 256.0
DYD3_k127_1772994_21 Membrane-flanked domain-containing protein - - - 0.0005504 49.0
DYD3_k127_1772994_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000002468 255.0
DYD3_k127_1772994_5 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000002957 202.0
DYD3_k127_1772994_6 Cupin domain - - - 0.0000000000000000000000000000001685 139.0
DYD3_k127_1772994_7 Sortase family K07284,K22278 - 3.4.22.70,3.5.1.104 0.000000000000000000000000002648 121.0
DYD3_k127_1772994_8 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000004175 116.0
DYD3_k127_1772994_9 - - - - 0.0000000000000000000000008354 116.0
DYD3_k127_1773341_0 GTP-binding protein LepA C-terminus K03596 - - 1.533e-207 662.0
DYD3_k127_1773341_1 oligoendopeptidase F K08602 - - 1.312e-197 636.0
DYD3_k127_1773341_2 PFAM phosphoesterase, RecJ domain protein K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 403.0
DYD3_k127_1773341_3 phosphoglycerate mutase K02226,K22316 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 3.1.26.4,3.1.3.73 0.000000000000000000000000000128 120.0
DYD3_k127_1773341_4 - - - - 0.000000000000000000000000004454 131.0
DYD3_k127_1773341_5 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000000001779 94.0
DYD3_k127_1773341_6 acetyltransferase K18816 - 2.3.1.82 0.000000000000004661 80.0
DYD3_k127_1783073_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 364.0
DYD3_k127_1783073_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 363.0
DYD3_k127_1823202_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1069.0
DYD3_k127_1823202_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 497.0
DYD3_k127_1823202_10 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000002851 108.0
DYD3_k127_1823202_11 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.0000000002734 64.0
DYD3_k127_1823202_12 Phosphopantetheine attachment site - - - 0.000000004925 68.0
DYD3_k127_1823202_13 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.0000000198 66.0
DYD3_k127_1823202_2 Oligoendopeptidase f K01283,K08602 - 3.4.15.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 372.0
DYD3_k127_1823202_3 PFAM Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 327.0
DYD3_k127_1823202_4 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004611 290.0
DYD3_k127_1823202_5 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000008073 256.0
DYD3_k127_1823202_6 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000008803 246.0
DYD3_k127_1823202_7 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000538 187.0
DYD3_k127_1823202_8 Thioredoxin - - - 0.00000000000000000000000000000000000004216 152.0
DYD3_k127_1823202_9 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000007541 125.0
DYD3_k127_2041823_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 545.0
DYD3_k127_2041823_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006927 414.0
DYD3_k127_2041823_10 Glycosyltransferase like family K07011 - - 0.0000000000000000000000000000000000000000000000418 184.0
DYD3_k127_2041823_11 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000001287 181.0
DYD3_k127_2041823_12 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.00000000000000000000000000000002527 136.0
DYD3_k127_2041823_13 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000003402 106.0
DYD3_k127_2041823_14 NUDIX domain - - - 0.0000000000000000000003276 106.0
DYD3_k127_2041823_15 RmlD substrate binding domain - - - 0.0000000000000000000007205 106.0
DYD3_k127_2041823_16 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000001884 98.0
DYD3_k127_2041823_17 Uncharacterized conserved protein (DUF2304) K09153 - - 0.000000000000000006621 89.0
DYD3_k127_2041823_18 Haloacid dehalogenase-like hydrolase K20866 - 3.1.3.10 0.000000000000118 80.0
DYD3_k127_2041823_19 PFAM methyltransferase - - - 0.000000000001534 76.0
DYD3_k127_2041823_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 386.0
DYD3_k127_2041823_20 negative regulation of transcription, DNA-templated - - - 0.0002383 48.0
DYD3_k127_2041823_21 COG1437 Adenylate cyclase, class 2 (thermophilic) K05873 - 4.6.1.1 0.0005731 50.0
DYD3_k127_2041823_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 368.0
DYD3_k127_2041823_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000001676 273.0
DYD3_k127_2041823_5 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000003153 259.0
DYD3_k127_2041823_6 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000603 246.0
DYD3_k127_2041823_7 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000006232 232.0
DYD3_k127_2041823_8 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000001121 196.0
DYD3_k127_2041823_9 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000004888 200.0
DYD3_k127_2128154_0 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000003026 121.0
DYD3_k127_2128154_1 NUDIX domain K03574 - 3.6.1.55 0.00000000000000000005725 92.0
DYD3_k127_2128154_2 - - - - 0.000000000002414 81.0
DYD3_k127_2128154_3 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0017144,GO:0018130,GO:0019752,GO:0032259,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.197 0.000000001165 70.0
DYD3_k127_2133343_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000822 349.0
DYD3_k127_2133343_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003153 284.0
DYD3_k127_2133343_10 Capsular polysaccharide biosynthesis protein - - - 0.00000001549 64.0
DYD3_k127_2133343_11 - - - - 0.0000001179 63.0
DYD3_k127_2133343_12 Trypsin-like peptidase domain - - - 0.000000133 63.0
DYD3_k127_2133343_14 O-Antigen ligase - - - 0.0001879 54.0
DYD3_k127_2133343_2 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009049 257.0
DYD3_k127_2133343_3 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.00000000000000000000000000000000000000003028 165.0
DYD3_k127_2133343_4 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000001244 132.0
DYD3_k127_2133343_6 self proteolysis - - - 0.00000000000000000000000000002717 136.0
DYD3_k127_2133343_7 PFAM sigma-70 region 2 domain protein K03088 - - 0.000000000000000002248 93.0
DYD3_k127_2133343_8 PQQ-like domain - - - 0.00000000000004415 85.0
DYD3_k127_2133343_9 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000004647 76.0
DYD3_k127_2621389_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 445.0
DYD3_k127_2621389_1 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000003681 216.0
DYD3_k127_2621389_10 - - - - 0.000000000003181 67.0
DYD3_k127_2621389_11 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.00000000001341 76.0
DYD3_k127_2621389_12 - - - - 0.0000000001368 63.0
DYD3_k127_2621389_13 - - - - 0.0000004734 52.0
DYD3_k127_2621389_14 - - - - 0.000004436 49.0
DYD3_k127_2621389_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000003189 178.0
DYD3_k127_2621389_3 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000001012 174.0
DYD3_k127_2621389_4 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.0000000000000000000000000000000000333 146.0
DYD3_k127_2621389_5 Mg2 transporter-C family protein K07507 - - 0.000000000000000000000000000000006173 133.0
DYD3_k127_2621389_6 COG NOG14552 non supervised orthologous group - - - 0.0000000000000000001547 91.0
DYD3_k127_2621389_7 - - - - 0.000000000000002608 75.0
DYD3_k127_2621389_8 - - - - 0.00000000000001724 74.0
DYD3_k127_2621389_9 - - - - 0.00000000000003768 75.0
DYD3_k127_2762587_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 1.505e-226 721.0
DYD3_k127_2762587_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 466.0
DYD3_k127_2762587_10 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000003138 237.0
DYD3_k127_2762587_11 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000001076 233.0
DYD3_k127_2762587_12 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000001438 197.0
DYD3_k127_2762587_13 Pyridine nucleotide-disulphide oxidoreductase K03885 GO:0003674,GO:0003824,GO:0003955,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0019646,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 1.6.99.3 0.000000000000000000000000000000000000000000003114 181.0
DYD3_k127_2762587_14 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.00000000000000000000000000000000000000000002514 174.0
DYD3_k127_2762587_15 metallophosphoesterase K07098 - - 0.000000000000000000000000000000000002753 154.0
DYD3_k127_2762587_16 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000000002062 140.0
DYD3_k127_2762587_17 Protein of unknown function (DUF4230) - - - 0.000000000000000000000000000000002661 136.0
DYD3_k127_2762587_18 Nucleotidyl transferase - - - 0.0000000000000000000000000000001292 132.0
DYD3_k127_2762587_19 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000008513 125.0
DYD3_k127_2762587_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 448.0
DYD3_k127_2762587_20 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004518,GO:0004550,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006464,GO:0006468,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016788,GO:0018995,GO:0019205,GO:0019538,GO:0019637,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034641,GO:0036211,GO:0042025,GO:0043170,GO:0043412,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044464,GO:0046483,GO:0046777,GO:0046939,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072527,GO:0090304,GO:0090305,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000004724 114.0
DYD3_k127_2762587_21 Binds the 23S rRNA K02909 - - 0.0000000000000000000000004908 107.0
DYD3_k127_2762587_22 Vitamin K epoxide reductase - - - 0.0000000000000004262 83.0
DYD3_k127_2762587_23 PAP2 superfamily - - - 0.0000000000000114 82.0
DYD3_k127_2762587_24 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000003393 57.0
DYD3_k127_2762587_25 Belongs to the UPF0200 family - - - 0.000004655 57.0
DYD3_k127_2762587_3 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004252 453.0
DYD3_k127_2762587_4 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009179 378.0
DYD3_k127_2762587_5 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835,K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 368.0
DYD3_k127_2762587_6 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006827 333.0
DYD3_k127_2762587_7 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001179 264.0
DYD3_k127_2762587_8 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001312 251.0
DYD3_k127_2762587_9 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000001189 235.0
DYD3_k127_2773240_0 Flotillin K07192 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000004477 206.0
DYD3_k127_2773240_2 His Kinase A (phosphoacceptor) domain - - - 0.000000006023 57.0
DYD3_k127_3021630_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0030880,GO:0032991,GO:0040007,GO:0044424,GO:0044464,GO:0061695,GO:0071944,GO:1902494,GO:1990234 2.7.7.6 0.0 1202.0
DYD3_k127_3021630_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1193.0
DYD3_k127_3021630_10 Putative RNA methylase family UPF0020 - - - 0.0000000000000000000000000889 124.0
DYD3_k127_3021630_11 Fibronectin type III domain - - - 0.000000000000000000000001927 121.0
DYD3_k127_3021630_12 domain protein K14194 - - 0.000000000000000000000002612 119.0
DYD3_k127_3021630_13 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000002585 92.0
DYD3_k127_3021630_14 - - - - 0.00000000000000007389 84.0
DYD3_k127_3021630_15 Protein of unknown function (DUF1761) - - - 0.000000000000001917 81.0
DYD3_k127_3021630_16 Tetratricopeptide TPR_2 repeat protein - - - 0.00000009036 66.0
DYD3_k127_3021630_17 SMART helix-turn-helix domain protein K15539 - - 0.000009376 56.0
DYD3_k127_3021630_18 Domain of unknown function (DUF4397) - - - 0.00001032 58.0
DYD3_k127_3021630_19 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00001247 53.0
DYD3_k127_3021630_2 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 494.0
DYD3_k127_3021630_20 - - - - 0.00003284 54.0
DYD3_k127_3021630_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 443.0
DYD3_k127_3021630_4 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 411.0
DYD3_k127_3021630_5 tRNA synthetases class II (D, K and N) K04568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005292 323.0
DYD3_k127_3021630_6 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006982 286.0
DYD3_k127_3021630_7 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000005392 198.0
DYD3_k127_3021630_8 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000004762 134.0
DYD3_k127_3021630_9 WD40 repeat, subgroup - - - 0.000000000000000000000000006934 127.0
DYD3_k127_3041406_0 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 400.0
DYD3_k127_3041406_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 383.0
DYD3_k127_3041406_10 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.000000000000000000000000000000001252 137.0
DYD3_k127_3041406_11 oxidoreductase activity - - - 0.00000000000000000000000005705 116.0
DYD3_k127_3041406_12 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000001589 111.0
DYD3_k127_3041406_13 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 - 1.2.7.3 0.000000000000000247 85.0
DYD3_k127_3041406_14 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000008636 71.0
DYD3_k127_3041406_15 Trypsin-like peptidase domain K04771,K08669 - 3.4.21.107,3.4.21.108 0.000000000744 70.0
DYD3_k127_3041406_16 Rieske 2Fe-2S K05710 - - 0.000000005482 62.0
DYD3_k127_3041406_2 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 349.0
DYD3_k127_3041406_3 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 347.0
DYD3_k127_3041406_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009362 279.0
DYD3_k127_3041406_5 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000008086 265.0
DYD3_k127_3041406_6 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000005971 256.0
DYD3_k127_3041406_7 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000009603 209.0
DYD3_k127_3041406_8 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000003702 219.0
DYD3_k127_3041406_9 Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate K15024 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000008482 195.0
DYD3_k127_3065900_0 TIGRFAM SUF system FeS cluster assembly, SufB K07033,K09014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003005 601.0
DYD3_k127_3065900_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 443.0
DYD3_k127_3065900_2 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007686 270.0
DYD3_k127_3065900_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000005087 222.0
DYD3_k127_3065900_4 SUF system FeS assembly protein, NifU family K04488 - - 0.0000000000000000000000000000000008052 136.0
DYD3_k127_3065900_5 TIGRFAM FeS assembly protein SufD K09015 - - 0.0000000000000000000000000001604 125.0
DYD3_k127_3065900_6 lytic transglycosylase activity K03194 - - 0.000000000000000000000001058 117.0
DYD3_k127_3065900_7 COG1512 Beta-propeller domains of methanol dehydrogenase type - - - 0.000000000000000001388 101.0
DYD3_k127_3065900_8 metal-sulfur cluster biosynthetic - - - 0.000000000000000009071 86.0
DYD3_k127_3065900_9 - - - - 0.00000596 55.0
DYD3_k127_3107427_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 329.0
DYD3_k127_3107427_1 guanidinoacetate N-methyltransferase activity K00542 GO:0000003,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006575,GO:0006600,GO:0006601,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006936,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008168,GO:0008652,GO:0008757,GO:0009058,GO:0009116,GO:0009119,GO:0009653,GO:0009790,GO:0009887,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0017144,GO:0019752,GO:0019953,GO:0022414,GO:0030731,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0034641,GO:0040008,GO:0040014,GO:0042278,GO:0042398,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046128,GO:0046394,GO:0046483,GO:0046498,GO:0046500,GO:0046983,GO:0048232,GO:0048513,GO:0048568,GO:0048609,GO:0048638,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0051186,GO:0051239,GO:0051704,GO:0055086,GO:0065007,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1990402 2.1.1.2 0.000000000000000000000000000000000000000000000005745 181.0
DYD3_k127_3107427_10 lipid kinase, YegS Rv2252 BmrU family - - - 0.000001127 59.0
DYD3_k127_3107427_11 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000001829 59.0
DYD3_k127_3107427_2 response regulator receiver - - - 0.00000000000000000000000000000000004725 153.0
DYD3_k127_3107427_3 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000003507 126.0
DYD3_k127_3107427_4 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000001705 116.0
DYD3_k127_3107427_5 RNA recognition motif - - - 0.0000000000000000000004741 98.0
DYD3_k127_3107427_6 Belongs to the UPF0102 family K07460 - - 0.0000000000000000003095 93.0
DYD3_k127_3107427_7 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000002184 91.0
DYD3_k127_3107427_8 phenylacetate-CoA ligase activity - - - 0.000000000000009863 81.0
DYD3_k127_3107427_9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000001377 78.0
DYD3_k127_3185303_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 1.66e-243 781.0
DYD3_k127_3185303_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000005785 249.0
DYD3_k127_3185303_2 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000003835 107.0
DYD3_k127_3185303_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000001856 54.0
DYD3_k127_3237680_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 332.0
DYD3_k127_3237680_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000003507 261.0
DYD3_k127_3237680_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000001152 198.0
DYD3_k127_3237680_3 Dienelactone hydrolase family K07100 - - 0.000000000000000000000000000000000000000000000000003206 192.0
DYD3_k127_3237680_4 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 0.0000000000000000000000000000000000000000000001572 181.0
DYD3_k127_3237680_5 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000001801 135.0
DYD3_k127_3237680_6 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000008133 140.0
DYD3_k127_3237680_7 Domain of unknown function (DUF4349) - - - 0.0000000000000000000000046 113.0
DYD3_k127_3237680_8 Metal binding domain of Ada K00567 - 2.1.1.63 0.000000000000000000001073 100.0
DYD3_k127_3237680_9 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000004231 62.0
DYD3_k127_3343929_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.736e-295 919.0
DYD3_k127_3343929_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000009565 199.0
DYD3_k127_3343929_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000168 177.0
DYD3_k127_3343929_3 Peptidase family M50 - - - 0.00000000000000000000000000000000000007769 151.0
DYD3_k127_3409363_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 415.0
DYD3_k127_3409363_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 415.0
DYD3_k127_3409363_10 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.00000000000000000000000000000000000000000000006067 188.0
DYD3_k127_3409363_11 - - - - 0.000000000000000000000000000000000000000000006078 169.0
DYD3_k127_3409363_12 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000009418 153.0
DYD3_k127_3409363_13 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000001148 153.0
DYD3_k127_3409363_14 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000002051 156.0
DYD3_k127_3409363_15 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000003255 149.0
DYD3_k127_3409363_16 His Kinase A (phosphoacceptor) domain K19694 - - 0.000000000000000000000000000000000007149 151.0
DYD3_k127_3409363_17 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000005817 138.0
DYD3_k127_3409363_18 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000001568 115.0
DYD3_k127_3409363_19 Yqey-like protein K09117 - - 0.000000000000000000000000002813 117.0
DYD3_k127_3409363_2 histidyl-tRNA aminoacylation K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 360.0
DYD3_k127_3409363_20 - - - - 0.0000000000000000000000001133 111.0
DYD3_k127_3409363_21 Belongs to the BI1 family K06890 - - 0.000000000000000000000001074 113.0
DYD3_k127_3409363_22 uridine kinase K00876 - 2.7.1.48 0.00000000000000000000001377 111.0
DYD3_k127_3409363_23 glutamine amidotransferase K01951 - 6.3.5.2 0.000000000000000000001631 109.0
DYD3_k127_3409363_24 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000003233 99.0
DYD3_k127_3409363_25 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000001161 84.0
DYD3_k127_3409363_27 domain protein K20276 - - 0.000000000000131 84.0
DYD3_k127_3409363_28 Transcriptional regulator K13643 - - 0.000000000007869 71.0
DYD3_k127_3409363_29 Belongs to the peptidase S8 family - - - 0.0000000001675 69.0
DYD3_k127_3409363_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K00058,K03977 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 343.0
DYD3_k127_3409363_30 von Willebrand factor type A domain - - - 0.00000004259 63.0
DYD3_k127_3409363_31 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00004649 48.0
DYD3_k127_3409363_32 domain, Protein K13714 - 3.2.1.96,3.5.1.28 0.0001519 53.0
DYD3_k127_3409363_33 DNA protecting protein DprA K04096 - - 0.0003617 44.0
DYD3_k127_3409363_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007172 327.0
DYD3_k127_3409363_5 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000001825 240.0
DYD3_k127_3409363_6 Domain of unknown function (DUF4166) - - - 0.0000000000000000000000000000000000000000000000000000000003732 212.0
DYD3_k127_3409363_7 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000006534 213.0
DYD3_k127_3409363_8 YibE/F-like protein - - - 0.0000000000000000000000000000000000000000000000000000001982 210.0
DYD3_k127_3409363_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000003887 196.0
DYD3_k127_344550_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 463.0
DYD3_k127_344550_1 ferric reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001246 288.0
DYD3_k127_344550_2 Glycosyl transferase, WecB TagA CpsF family K05946 - 2.4.1.187 0.000000000000000000000000000000000000000000000000001153 192.0
DYD3_k127_344550_3 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000223 163.0
DYD3_k127_344550_4 Excinuclease ABC, C subunit K07461 - - 0.000000000000000000000000003361 114.0
DYD3_k127_344550_5 Peptidase family M23 K21471 - - 0.0000000000000000000000005379 119.0
DYD3_k127_344550_6 Cupredoxin-like domain - - - 0.00000000000002693 83.0
DYD3_k127_3627847_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 1.848e-220 711.0
DYD3_k127_3627847_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 527.0
DYD3_k127_3627847_10 zinc metalloprotease K04771,K11749,K16922 GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040007,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000001266 229.0
DYD3_k127_3627847_11 domain, Protein - - - 0.000000000000000000000000000000000004857 146.0
DYD3_k127_3627847_12 Thioredoxin - - - 0.00000000000000000000000000001717 129.0
DYD3_k127_3627847_13 acetyltransferases and hydrolases with the alpha beta hydrolase fold K00650 - 2.3.1.43 0.00000000000000000000000000003693 136.0
DYD3_k127_3627847_14 acetyltransferases and hydrolases with the alpha beta hydrolase fold K00650 - 2.3.1.43 0.0000000000000000000000001322 117.0
DYD3_k127_3627847_15 Bacterial DNA-binding protein K03530 - - 0.000000000000000000000008034 104.0
DYD3_k127_3627847_16 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000005102 105.0
DYD3_k127_3627847_17 - - - - 0.000000000000000004466 93.0
DYD3_k127_3627847_19 - - - - 0.0000000007095 70.0
DYD3_k127_3627847_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006379 461.0
DYD3_k127_3627847_20 Rhodanese-related sulfurtransferase K01011 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.8.1.1,2.8.1.2 0.0000002132 59.0
DYD3_k127_3627847_21 phage shock protein C K03973 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0019222,GO:0044464,GO:0048518,GO:0050789,GO:0060255,GO:0065007,GO:0071944 - 0.000007459 53.0
DYD3_k127_3627847_22 Periplasmic component of the Tol biopolymer transport system - - - 0.00003865 56.0
DYD3_k127_3627847_23 PspC domain - - - 0.00006424 50.0
DYD3_k127_3627847_24 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.0004465 53.0
DYD3_k127_3627847_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006962 405.0
DYD3_k127_3627847_4 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 389.0
DYD3_k127_3627847_5 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 324.0
DYD3_k127_3627847_6 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003105 275.0
DYD3_k127_3627847_7 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001601 260.0
DYD3_k127_3627847_8 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008585 249.0
DYD3_k127_3627847_9 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000002022 222.0
DYD3_k127_3641580_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 574.0
DYD3_k127_3641580_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 391.0
DYD3_k127_3641580_10 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000002252 202.0
DYD3_k127_3641580_11 Psort location Cytoplasmic, score 9.98 K00705 - 2.4.1.25 0.000000000000000000000000000000000000000000000000000000645 211.0
DYD3_k127_3641580_12 endonuclease III K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000001081 187.0
DYD3_k127_3641580_13 ZIP Zinc transporter K16267 - - 0.0000000000000000000000000000000000000000000000003118 184.0
DYD3_k127_3641580_14 protein with SCP PR1 domains - - - 0.000000000000000000000000000000000000000000000000777 190.0
DYD3_k127_3641580_15 Protein of unknown function (DUF2914) - - - 0.00000000000000000000000000000000000000000006837 173.0
DYD3_k127_3641580_16 Protein of unknown function (DUF3048) C-terminal domain - - - 0.000000000000000000000000000000000000000008658 168.0
DYD3_k127_3641580_17 PFAM glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000004912 164.0
DYD3_k127_3641580_18 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000006444 147.0
DYD3_k127_3641580_19 Hydrolase, NUDIX family K01515 - 3.6.1.13 0.00000000000000000000000000000002538 132.0
DYD3_k127_3641580_2 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 390.0
DYD3_k127_3641580_20 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000239 105.0
DYD3_k127_3641580_21 protein conserved in bacteria K01768 - 4.6.1.1 0.000000000000000000004788 100.0
DYD3_k127_3641580_22 Calcineurin-like phosphoesterase - - - 0.00000000002073 77.0
DYD3_k127_3641580_23 Translin. Source PGD - - - 0.00000001514 63.0
DYD3_k127_3641580_24 PFAM phosphoesterase, RecJ domain protein - - - 0.00000119 60.0
DYD3_k127_3641580_25 Prokaryotic N-terminal methylation motif K02456,K02650,K02655 - - 0.00006544 56.0
DYD3_k127_3641580_26 - K06147 - - 0.0001791 53.0
DYD3_k127_3641580_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006076 357.0
DYD3_k127_3641580_4 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 325.0
DYD3_k127_3641580_5 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007918 287.0
DYD3_k127_3641580_6 Bacitracin resistance protein BacA K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000002587 252.0
DYD3_k127_3641580_7 COG1253 Hemolysins and related proteins containing CBS domains - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000001665 234.0
DYD3_k127_3641580_8 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000002366 230.0
DYD3_k127_3641580_9 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000004166 221.0
DYD3_k127_3745156_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 350.0
DYD3_k127_3745156_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008969 278.0
DYD3_k127_3745156_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000003864 176.0
DYD3_k127_3745156_3 MafB19-like deaminase K01493 - 3.5.4.12 0.000000000000000000000000000000000000004361 151.0
DYD3_k127_3745156_4 dUTP diphosphatase activity K01520,K13038 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0051259,GO:0051260,GO:0055086,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23,4.1.1.36,6.3.2.5 0.0000000000000000000000000000000001182 138.0
DYD3_k127_3745156_5 AAA domain K00859 - 2.7.1.24 0.00000000000005249 83.0
DYD3_k127_3934632_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 394.0
DYD3_k127_3934632_1 Tetratricopeptide repeat - - - 0.000003461 60.0
DYD3_k127_3970390_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009189 575.0
DYD3_k127_4138559_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 536.0
DYD3_k127_4138559_1 Participates in initiation and elongation during chromosome replication K02314 GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009059 440.0
DYD3_k127_4138559_10 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00007884 45.0
DYD3_k127_4138559_2 PFAM NAD dependent epimerase dehydratase family K08678 - 4.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000001453 267.0
DYD3_k127_4138559_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000001958 216.0
DYD3_k127_4138559_4 Glycosyltransferase Family 4 K19424 - - 0.000000000000000000000000000000003339 148.0
DYD3_k127_4138559_5 diguanylate cyclase - - - 0.0000000000000000004399 100.0
DYD3_k127_4138559_6 tRNA (uracil-5-)-methyltransferase TRM9 K15444 GO:0000049,GO:0001300,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006725,GO:0006807,GO:0007568,GO:0007569,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016300,GO:0016491,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0019222,GO:0030488,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0032502,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0035690,GO:0042221,GO:0042493,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051213,GO:0051246,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0070887,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:2000112 2.1.1.229 0.00000000000002901 83.0
DYD3_k127_4138559_7 Transmembrane amino acid transporter protein - - - 0.00000000002156 76.0
DYD3_k127_4138559_8 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000001073 60.0
DYD3_k127_4138559_9 PGAP1-like protein - - - 0.00000004685 62.0
DYD3_k127_4276324_0 sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000007568 227.0
DYD3_k127_4276324_1 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000004247 128.0
DYD3_k127_4276324_2 Glycosyl transferases group 1 - - - 0.000000000000000000000005044 118.0
DYD3_k127_4276324_3 Methyltransferase - - - 0.000000000000006908 85.0
DYD3_k127_4322824_0 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000008638 210.0
DYD3_k127_4322824_1 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000005056 197.0
DYD3_k127_4322824_2 orotate phosphoribosyltransferase activity K00762 - 2.4.2.10 0.000000000000000000000000000006465 127.0
DYD3_k127_4322824_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000001815 100.0
DYD3_k127_4322824_4 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.00000000005365 65.0
DYD3_k127_4394409_0 Heat shock 70 kDa protein K04043 - - 1.771e-249 784.0
DYD3_k127_4394409_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000731 339.0
DYD3_k127_4394409_2 IMG reference gene - - - 0.00000003231 64.0
DYD3_k127_4538045_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005963 619.0
DYD3_k127_4538045_1 Transketolase, pyrimidine binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 367.0
DYD3_k127_4538045_10 COGs COG0503 Adenine guanine phosphoribosyltransferase and related PRPP-binding protein K00759 - 2.4.2.7 0.000000000000000000000000000000000000004074 160.0
DYD3_k127_4538045_11 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000000000000004615 142.0
DYD3_k127_4538045_12 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000005773 145.0
DYD3_k127_4538045_13 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000003766 137.0
DYD3_k127_4538045_14 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000007541 129.0
DYD3_k127_4538045_15 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000005538 124.0
DYD3_k127_4538045_16 Metallo-beta-lactamase domain protein K06167 - 3.1.4.55 0.00000000000000000000000000782 121.0
DYD3_k127_4538045_17 COG NOG15344 non supervised orthologous group - - - 0.00000000000000000000000002467 111.0
DYD3_k127_4538045_18 Belongs to the mannose-6-phosphate isomerase type 2 family K00971 - 2.7.7.13 0.000000000000000000000002836 106.0
DYD3_k127_4538045_19 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0030428,GO:0032502,GO:0042623,GO:0043170,GO:0043934,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000004363 108.0
DYD3_k127_4538045_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 325.0
DYD3_k127_4538045_20 Belongs to the carbohydrate kinase PfkB family K00852 - 2.7.1.15 0.00000000000000000000006865 112.0
DYD3_k127_4538045_21 Sugar-specific transcriptional regulator TrmB - - - 0.00000000000000006981 90.0
DYD3_k127_4538045_23 Belongs to the AAA ATPase family K08956 - - 0.000000000002767 74.0
DYD3_k127_4538045_24 - - - - 0.00000000004284 64.0
DYD3_k127_4538045_25 Unextendable partial coding region - - - 0.0000000005772 64.0
DYD3_k127_4538045_27 cell adhesion K11904 - - 0.0000001439 64.0
DYD3_k127_4538045_28 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.000000414 58.0
DYD3_k127_4538045_29 Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions - GO:0003674,GO:0003824,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111 - 0.000002223 60.0
DYD3_k127_4538045_3 COG0191 Fructose tagatose bisphosphate aldolase K01624,K08302 - 4.1.2.13,4.1.2.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 320.0
DYD3_k127_4538045_31 Protein of unknown function (DUF3137) - - - 0.00002717 56.0
DYD3_k127_4538045_32 the current gene model (or a revised gene model) may contain one or more premature stops and or frameshifts - - - 0.0001373 49.0
DYD3_k127_4538045_33 COG NOG15344 non supervised orthologous group - - - 0.0005102 43.0
DYD3_k127_4538045_34 Cupredoxin-like domain - - - 0.000512 51.0
DYD3_k127_4538045_35 Hydrolase K21471 - - 0.0008169 49.0
DYD3_k127_4538045_36 - - - - 0.0008741 42.0
DYD3_k127_4538045_4 1-deoxy-D-xylulose-5-phosphate synthase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 296.0
DYD3_k127_4538045_5 ABC transporter K06147 GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009526,GO:0009536,GO:0009555,GO:0009657,GO:0009658,GO:0009889,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0010288,GO:0010380,GO:0016020,GO:0016043,GO:0018130,GO:0019222,GO:0019538,GO:0019637,GO:0019720,GO:0019725,GO:0019866,GO:0022622,GO:0030003,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0046916,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051186,GO:0051188,GO:0051189,GO:0051193,GO:0051276,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0090056,GO:0090407,GO:0098771,GO:0099402,GO:1901360,GO:1901362,GO:1901401,GO:1901463,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000558 304.0
DYD3_k127_4538045_6 phosphotransferase activity, for other substituted phosphate groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001643 292.0
DYD3_k127_4538045_7 MOSC N-terminal beta barrel domain K07140 - - 0.0000000000000000000000000000000000000000000000000000000000000001371 235.0
DYD3_k127_4538045_8 N-terminal domain of ribose phosphate pyrophosphokinase - - - 0.00000000000000000000000000000000000000000000000000000000000001997 228.0
DYD3_k127_4538045_9 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000002144 194.0
DYD3_k127_4592441_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.594e-218 687.0
DYD3_k127_4592441_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 7.367e-202 640.0
DYD3_k127_4592441_10 TIGRFAM hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000001033 209.0
DYD3_k127_4592441_11 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000003858 168.0
DYD3_k127_4592441_12 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000007643 130.0
DYD3_k127_4592441_13 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035870,GO:0036220,GO:0036222,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000003171 130.0
DYD3_k127_4592441_14 RNA methylase - GO:0003674,GO:0003824,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000003195 126.0
DYD3_k127_4592441_15 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000001358 113.0
DYD3_k127_4592441_16 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000009505 92.0
DYD3_k127_4592441_17 Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme K14656 - 2.7.7.2 0.00000000000000001026 90.0
DYD3_k127_4592441_18 reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000003622 87.0
DYD3_k127_4592441_19 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042802,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000005268 71.0
DYD3_k127_4592441_2 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 616.0
DYD3_k127_4592441_20 - - - - 0.0000000009634 69.0
DYD3_k127_4592441_21 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000001185 64.0
DYD3_k127_4592441_22 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000001374 62.0
DYD3_k127_4592441_23 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109,K02113 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.00000014 60.0
DYD3_k127_4592441_24 membrane protein, required for colicin V production - - - 0.000001224 59.0
DYD3_k127_4592441_25 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.0003011 52.0
DYD3_k127_4592441_3 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402 475.0
DYD3_k127_4592441_4 Cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 372.0
DYD3_k127_4592441_5 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 379.0
DYD3_k127_4592441_6 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 361.0
DYD3_k127_4592441_7 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 334.0
DYD3_k127_4592441_8 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 314.0
DYD3_k127_4592441_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000001514 228.0
DYD3_k127_4649542_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 1.454e-259 815.0
DYD3_k127_4649542_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 9.033e-203 653.0
DYD3_k127_4649542_10 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000001373 57.0
DYD3_k127_4649542_2 Magnesium chelatase, subunit ChlI K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 530.0
DYD3_k127_4649542_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000001283 196.0
DYD3_k127_4649542_4 Peptidoglycan-binding LysM - - - 0.0000000000000000000000000000000000000002577 166.0
DYD3_k127_4649542_6 Amino acid permease K03294 - - 0.000000000000000009071 86.0
DYD3_k127_4649542_7 Belongs to the peptidase S26 family - - - 0.0000000000002331 74.0
DYD3_k127_4649542_8 TIGRFAM Sporulation protein YteA - - - 0.00000000004396 68.0
DYD3_k127_4649542_9 Protein conserved in bacteria - - - 0.00000000593 66.0
DYD3_k127_4661454_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 543.0
DYD3_k127_4661454_1 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006396 384.0
DYD3_k127_4661454_10 nucleotidyltransferase activity - - - 0.000000000007528 78.0
DYD3_k127_4661454_11 TM2 domain - - - 0.0000004544 55.0
DYD3_k127_4661454_12 domain protein - - - 0.000002278 57.0
DYD3_k127_4661454_13 protein secretion by the type IV secretion system K03201 - - 0.00002701 58.0
DYD3_k127_4661454_15 domain protein - - - 0.0003162 56.0
DYD3_k127_4661454_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007457 352.0
DYD3_k127_4661454_3 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 297.0
DYD3_k127_4661454_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000002157 200.0
DYD3_k127_4661454_5 PFAM 60 kDa inner membrane insertion protein K03217 - - 0.000000000000000000000000000000005909 136.0
DYD3_k127_4661454_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000003502 127.0
DYD3_k127_4661454_7 Telomere recombination K07566 - 2.7.7.87 0.0000000000000000000000000000001156 132.0
DYD3_k127_4661454_8 - - - - 0.000000000000007681 87.0
DYD3_k127_4661454_9 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000008807 78.0
DYD3_k127_4946330_0 Ftsk_gamma K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006736 299.0
DYD3_k127_4946330_1 COG0433 Predicted ATPase - - - 0.0000000000000000000000000000000000000000000000000000006005 214.0
DYD3_k127_4946330_2 TIGRFAM Phage - - - 0.000000000000000000000000008242 126.0
DYD3_k127_4946330_4 - - - - 0.000000000000000000000001625 115.0
DYD3_k127_4946330_5 Protein of unknown function (DUF2829) - - - 0.0000000000000000002486 92.0
DYD3_k127_4946330_6 - - - - 0.00000000000000504 85.0
DYD3_k127_4946330_7 Cysteine-rich secretory protein family - - - 0.000000982 62.0
DYD3_k127_4946330_8 Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC - - - 0.0001474 50.0
DYD3_k127_4946330_9 transferase activity, transferring glycosyl groups - - - 0.0003277 52.0
DYD3_k127_4946757_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 413.0
DYD3_k127_4946757_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 309.0
DYD3_k127_4946757_2 adenosine deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000001006 248.0
DYD3_k127_4946757_3 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000003899 201.0
DYD3_k127_4946757_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356,K03503 - 3.4.21.88 0.000000000000000000000000000000000000000000003523 177.0
DYD3_k127_4946757_5 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.000000000000000000000000000001797 136.0
DYD3_k127_5072616_0 Conserved repeat domain - - - 0.000000000000000000000001097 117.0
DYD3_k127_5224685_0 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000009175 207.0
DYD3_k127_5224685_1 Methicillin resistance protein - - - 0.00000000000000000000000000000000000000000000001535 183.0
DYD3_k127_5224685_2 Protein of unknown function (DUF4012) - - - 0.00000000000000000000000000000000002952 156.0
DYD3_k127_5224685_3 four-way junction helicase activity K03550 GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 0.00000000000000000000000000000551 125.0
DYD3_k127_5224685_4 Domain of unknown function DUF11 - - - 0.00000001976 68.0
DYD3_k127_5228664_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.885e-249 791.0
DYD3_k127_5228664_1 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 524.0
DYD3_k127_5228664_10 UMP kinase activity K00947,K09903 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0030151,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000154 230.0
DYD3_k127_5228664_11 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000001584 230.0
DYD3_k127_5228664_12 TIGRFAM RecB family nuclease - - - 0.000000000000000000000000000000000000000000000000000000000004611 227.0
DYD3_k127_5228664_13 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000007514 229.0
DYD3_k127_5228664_14 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000004401 210.0
DYD3_k127_5228664_15 Glycosyltransferase like family 2 K03606,K07011 - - 0.000000000000000000000000000000000000000000000000000000379 204.0
DYD3_k127_5228664_16 Glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000000004224 197.0
DYD3_k127_5228664_17 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000003908 190.0
DYD3_k127_5228664_18 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000005531 198.0
DYD3_k127_5228664_19 DUF218 domain - - - 0.00000000000000000000000000000000000000000000000001085 188.0
DYD3_k127_5228664_2 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 442.0
DYD3_k127_5228664_20 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000001133 183.0
DYD3_k127_5228664_21 Short-chain dehydrogenase reductase sdr K00019,K07535 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.30 0.000000000000000000000000000000000000000000002934 173.0
DYD3_k127_5228664_22 Histidine kinase - - - 0.00000000000000000000000000000000000000000001328 181.0
DYD3_k127_5228664_23 cytoplasmic translational termination K02838 GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0030312,GO:0032984,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000001274 153.0
DYD3_k127_5228664_24 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000195 153.0
DYD3_k127_5228664_25 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000001964 158.0
DYD3_k127_5228664_26 Protein of unknown function (DUF4012) - - - 0.0000000000000000000000000000000000001985 161.0
DYD3_k127_5228664_27 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000001519 137.0
DYD3_k127_5228664_28 EamA-like transporter family - - - 0.00000000000000000000000000000002976 138.0
DYD3_k127_5228664_29 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000000002993 127.0
DYD3_k127_5228664_3 Cell division protein FtsA K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 389.0
DYD3_k127_5228664_30 the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA K02341 - 2.7.7.7 0.000000000000000000000000289 117.0
DYD3_k127_5228664_31 GIY-YIG catalytic domain K07461 - - 0.00000000000000000004835 101.0
DYD3_k127_5228664_32 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000002017 102.0
DYD3_k127_5228664_33 NifU domain protein - - - 0.00000000000001304 80.0
DYD3_k127_5228664_34 - - - - 0.00000000000009899 80.0
DYD3_k127_5228664_36 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.00000000000301 79.0
DYD3_k127_5228664_37 Ham1 family - - - 0.000000000008915 74.0
DYD3_k127_5228664_38 methylamine metabolic process K15977 - - 0.0000000003253 71.0
DYD3_k127_5228664_39 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000644 61.0
DYD3_k127_5228664_4 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 336.0
DYD3_k127_5228664_40 - - - - 0.000000006864 63.0
DYD3_k127_5228664_41 cellulase activity K14194,K14201,K20276 GO:0001968,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0008150,GO:0044877,GO:0051704,GO:0070051,GO:0098630,GO:0098743 - 0.000000007683 66.0
DYD3_k127_5228664_42 adenylyl cyclase CyaB K05873 - 4.6.1.1 0.00000005166 65.0
DYD3_k127_5228664_43 methyltransferase - - - 0.0000007305 54.0
DYD3_k127_5228664_44 PFAM Phosphoribulokinase Uridine kinase family K00876 - 2.7.1.48 0.000004646 59.0
DYD3_k127_5228664_45 PFAM ATP-binding region ATPase domain protein - - - 0.000006756 54.0
DYD3_k127_5228664_46 dTDP biosynthetic process K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00001151 55.0
DYD3_k127_5228664_47 Belongs to the pyrimidine 5'-nucleotidase family K01081 - 3.1.3.5 0.00001834 56.0
DYD3_k127_5228664_48 Transcriptional regulator - - - 0.0000276 54.0
DYD3_k127_5228664_49 Peptidase M22 glycoprotease K01409,K14742 - 2.3.1.234 0.00003168 53.0
DYD3_k127_5228664_5 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004724 301.0
DYD3_k127_5228664_50 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00008467 50.0
DYD3_k127_5228664_51 YecM protein K09907 - - 0.00008728 52.0
DYD3_k127_5228664_52 Peptidase family M23 - - - 0.00009486 53.0
DYD3_k127_5228664_53 Tetratricopeptide repeats - - - 0.00009995 54.0
DYD3_k127_5228664_54 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000103 53.0
DYD3_k127_5228664_55 C-terminal domain of CHU protein family - - - 0.0004228 54.0
DYD3_k127_5228664_56 Peptidase_C39 like family - - - 0.0005135 50.0
DYD3_k127_5228664_57 phosphoserine phosphatase K01079 - 3.1.3.3 0.0006263 50.0
DYD3_k127_5228664_6 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000879 290.0
DYD3_k127_5228664_7 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000515 293.0
DYD3_k127_5228664_8 Aminotransferase class-V K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000003146 255.0
DYD3_k127_5228664_9 type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002064 251.0
DYD3_k127_5382029_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.892e-320 1002.0
DYD3_k127_5382029_1 nucleotide-excision repair K03702,K08999 - - 2.809e-257 811.0
DYD3_k127_5382029_10 peptidyl-tyrosine sulfation - - - 0.0005224 49.0
DYD3_k127_5382029_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000004912 270.0
DYD3_k127_5382029_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000003218 236.0
DYD3_k127_5382029_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000001658 206.0
DYD3_k127_5382029_5 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000008074 179.0
DYD3_k127_5382029_6 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000003389 159.0
DYD3_k127_5382029_7 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000109 126.0
DYD3_k127_5382029_8 acr, cog1430 K09005 - - 0.0000000000000000000001787 103.0
DYD3_k127_5382029_9 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000009745 74.0
DYD3_k127_5438670_0 Leucyl-tRNA synthetase, Domain 2 K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 1.698e-266 850.0
DYD3_k127_5438670_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.885e-260 826.0
DYD3_k127_5438670_10 Anticodon binding domain K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 373.0
DYD3_k127_5438670_11 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 357.0
DYD3_k127_5438670_12 PFAM Type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006443 372.0
DYD3_k127_5438670_13 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 344.0
DYD3_k127_5438670_14 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007915 304.0
DYD3_k127_5438670_15 Intracellular protease, PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 284.0
DYD3_k127_5438670_16 PFAM RNA binding S1 domain protein K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000006464 248.0
DYD3_k127_5438670_17 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000003043 217.0
DYD3_k127_5438670_18 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000003743 210.0
DYD3_k127_5438670_19 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000002202 197.0
DYD3_k127_5438670_2 GTP-binding protein TypA K06207 - - 1.231e-200 642.0
DYD3_k127_5438670_20 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000001621 146.0
DYD3_k127_5438670_21 Zn-dependent hydrolases of the - - - 0.0000000000000000000000000000000002333 140.0
DYD3_k127_5438670_22 Guanylate kinase homologues. K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000003442 123.0
DYD3_k127_5438670_23 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000001967 121.0
DYD3_k127_5438670_24 - - - - 0.000000000000000000000000005795 113.0
DYD3_k127_5438670_26 ComEC Rec2-related protein K02238 - - 0.0000000000000000000000001133 121.0
DYD3_k127_5438670_27 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000002531 115.0
DYD3_k127_5438670_28 ATP-binding protein K06925 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000116 108.0
DYD3_k127_5438670_29 - - - - 0.000000000000000005589 90.0
DYD3_k127_5438670_3 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 615.0
DYD3_k127_5438670_30 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000009479 83.0
DYD3_k127_5438670_31 Diacylglycerol kinase catalytic domain - - - 0.0000000000000005155 91.0
DYD3_k127_5438670_32 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000005338 69.0
DYD3_k127_5438670_33 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0003674,GO:0003735,GO:0005198 - 0.00000005311 56.0
DYD3_k127_5438670_34 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000003128 61.0
DYD3_k127_5438670_35 - - - - 0.000001619 54.0
DYD3_k127_5438670_36 Protein of unknown function (DUF1059) - - - 0.000005563 50.0
DYD3_k127_5438670_37 Periplasmic copper-binding protein (NosD) K07218 - - 0.000007255 59.0
DYD3_k127_5438670_38 Short-chain dehydrogenase reductase sdr K00059 - 1.1.1.100 0.00002192 55.0
DYD3_k127_5438670_4 Uncharacterised protein family (UPF0261) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 510.0
DYD3_k127_5438670_5 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 507.0
DYD3_k127_5438670_6 ATPases associated with a variety of cellular activities K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 469.0
DYD3_k127_5438670_7 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006394 446.0
DYD3_k127_5438670_8 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0000166,GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005488,GO:0006082,GO:0006103,GO:0006520,GO:0006536,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0022607,GO:0034214,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070401,GO:0070402,GO:0070403,GO:0070404,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901605 1.4.1.2,1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 396.0
DYD3_k127_5438670_9 myo-inosose-2 dehydratase activity K18910 - 5.1.3.30,5.1.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009939 376.0
DYD3_k127_5652700_0 Heavy metal transport detoxification protein K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006841 598.0
DYD3_k127_5652700_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 312.0
DYD3_k127_5652700_2 Multicopper oxidase K04753 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001209 261.0
DYD3_k127_5652700_3 Cytochrome C biogenesis protein transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000009933 226.0
DYD3_k127_5652700_4 Hydroxymethylglutaryl-coenzyme A reductase - - - 0.000000000000000000000000000000000000000000000000000001479 207.0
DYD3_k127_5652700_5 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000000000000000000006951 155.0
DYD3_k127_5652700_6 CAAX protease self-immunity - - - 0.00000000000000000000000000000000006257 144.0
DYD3_k127_5652700_7 ASCH - - - 0.000001052 57.0
DYD3_k127_5652700_8 WD40-like Beta Propeller Repeat K03641 - - 0.00000145 60.0
DYD3_k127_5753182_0 PFAM TrkA-N domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 376.0
DYD3_k127_5753182_1 aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 314.0
DYD3_k127_5753182_10 COG2873 O-acetylhomoserine sulfhydrylase K01738,K01740 - 2.5.1.47,2.5.1.49 0.00000000000000000000000000000000000001878 155.0
DYD3_k127_5753182_11 Peptidase family M28 - - - 0.0000000000000000000000000000000000000827 154.0
DYD3_k127_5753182_12 Reductase C-terminal K00529 - 1.18.1.3 0.0000000000000000000000000000000000004179 154.0
DYD3_k127_5753182_13 Transport and Golgi organisation 2 - - - 0.00000000000000000000000000000000003066 145.0
DYD3_k127_5753182_14 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000003655 156.0
DYD3_k127_5753182_15 Glycosyl transferase family 2 - - - 0.0000000000000000000000000001203 134.0
DYD3_k127_5753182_16 - - - - 0.00000000000000000000002036 109.0
DYD3_k127_5753182_17 Sugar-specific transcriptional regulator TrmB - - - 0.0000000000000000004098 96.0
DYD3_k127_5753182_19 Helix-turn-helix domain K07729 - - 0.00000000000000004335 82.0
DYD3_k127_5753182_2 cytochrome c biogenesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005399 310.0
DYD3_k127_5753182_20 PFAM histidine kinase, HAMP region domain protein K03406,K03776,K05874,K05875 - - 0.0000000000000001326 95.0
DYD3_k127_5753182_21 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000003751 92.0
DYD3_k127_5753182_22 Cold shock protein domain K03704 - - 0.0000000000000005648 79.0
DYD3_k127_5753182_23 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000001099 81.0
DYD3_k127_5753182_24 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K05337 - - 0.00000000006319 66.0
DYD3_k127_5753182_25 copper amine oxidase - - - 0.0000000002447 72.0
DYD3_k127_5753182_26 cell redox homeostasis K12057 - - 0.0000000006626 70.0
DYD3_k127_5753182_27 Glycosyltransferase - - - 0.00000005093 59.0
DYD3_k127_5753182_28 Peptidoglycan-binding lysin domain - - - 0.000004589 57.0
DYD3_k127_5753182_29 helix_turn_helix, arabinose operon control protein - - - 0.000006198 55.0
DYD3_k127_5753182_3 PFAM ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002006 247.0
DYD3_k127_5753182_30 Peptidase C39, bacteriocin processing K19076 - - 0.0009897 48.0
DYD3_k127_5753182_4 tRNA (Guanine-1)-methyltransferase K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000003504 237.0
DYD3_k127_5753182_5 MacB-like periplasmic core domain K02004 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000003716 220.0
DYD3_k127_5753182_6 abc transporter atp-binding protein K06158 - - 0.000000000000000000000000000000000000000000000000000000009564 218.0
DYD3_k127_5753182_7 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.00000000000000000000000000000000000000000000000000353 194.0
DYD3_k127_5753182_8 MacB-like periplasmic core domain K02004 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000002801 197.0
DYD3_k127_5753182_9 Cytochrome C biogenesis protein transmembrane region - - - 0.00000000000000000000000000000000000000000009832 168.0
DYD3_k127_5765834_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003746 281.0
DYD3_k127_5765834_1 -O-antigen - - - 0.00000000001648 78.0
DYD3_k127_5824616_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 589.0
DYD3_k127_5824616_1 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 542.0
DYD3_k127_5824616_10 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000001259 227.0
DYD3_k127_5824616_11 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000005868 219.0
DYD3_k127_5824616_12 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000001443 217.0
DYD3_k127_5824616_13 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000004971 202.0
DYD3_k127_5824616_14 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000002339 198.0
DYD3_k127_5824616_15 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000008974 197.0
DYD3_k127_5824616_16 PAS domain - - - 0.00000000000000000000000000000000000000000000000001578 194.0
DYD3_k127_5824616_17 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000001544 179.0
DYD3_k127_5824616_18 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000001115 169.0
DYD3_k127_5824616_19 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000001733 164.0
DYD3_k127_5824616_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 514.0
DYD3_k127_5824616_20 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000003757 163.0
DYD3_k127_5824616_21 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000002585 143.0
DYD3_k127_5824616_22 Belongs to the universal ribosomal protein uS5 family K02988 GO:0000313,GO:0000314,GO:0003002,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009657,GO:0009955,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0031974,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032544,GO:0032991,GO:0034357,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042651,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0048856,GO:0050896,GO:0055035,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0098798,GO:1901259,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000459 149.0
DYD3_k127_5824616_23 Belongs to the peptidase S11 family K07262 - - 0.000000000000000000000000000000000002815 149.0
DYD3_k127_5824616_24 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000001343 134.0
DYD3_k127_5824616_25 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000003107 128.0
DYD3_k127_5824616_26 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000001375 123.0
DYD3_k127_5824616_27 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000006778 132.0
DYD3_k127_5824616_28 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000001691 120.0
DYD3_k127_5824616_29 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000001026 120.0
DYD3_k127_5824616_3 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 481.0
DYD3_k127_5824616_30 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000461 114.0
DYD3_k127_5824616_31 Binds to the 23S rRNA K02876 - - 0.000000000000000000001231 100.0
DYD3_k127_5824616_32 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000001663 96.0
DYD3_k127_5824616_33 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000007243 93.0
DYD3_k127_5824616_34 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000002775 101.0
DYD3_k127_5824616_35 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000004832 91.0
DYD3_k127_5824616_36 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000001046 89.0
DYD3_k127_5824616_37 Putative metal-binding motif - - - 0.0000000000000001361 93.0
DYD3_k127_5824616_38 Aminoacyl-tRNA editing domain K19055 GO:0002161,GO:0003674,GO:0003824,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0043906,GO:0044237,GO:0044238,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000006821 64.0
DYD3_k127_5824616_4 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 478.0
DYD3_k127_5824616_40 SMART Peptidase A22, presenilin signal peptide - - - 0.0001568 53.0
DYD3_k127_5824616_41 Encoded by K10408 - - 0.0005311 42.0
DYD3_k127_5824616_5 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 392.0
DYD3_k127_5824616_6 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000073 327.0
DYD3_k127_5824616_7 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009552 289.0
DYD3_k127_5824616_8 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000008578 239.0
DYD3_k127_5824616_9 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000002377 231.0
DYD3_k127_5827326_0 Threonine synthase N terminus K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 534.0
DYD3_k127_5827326_1 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 463.0
DYD3_k127_5827326_10 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000006033 178.0
DYD3_k127_5827326_11 Signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000002874 166.0
DYD3_k127_5827326_13 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000003884 143.0
DYD3_k127_5827326_14 DEAD DEAH box helicase domain protein K06877 - - 0.0000000000000000000000000000001396 131.0
DYD3_k127_5827326_15 PFAM response regulator receiver - - - 0.0000000000000000000000009309 108.0
DYD3_k127_5827326_16 cellulose binding - - - 0.0000000000000000000002751 115.0
DYD3_k127_5827326_17 STAS domain - - - 0.00000000000000000001152 96.0
DYD3_k127_5827326_18 Type IV pilus assembly protein PilM; K02662 - - 0.00000000000000000349 100.0
DYD3_k127_5827326_19 Metalloenzyme superfamily - - - 0.00000000000000001626 94.0
DYD3_k127_5827326_2 General secretory system II protein E domain protein K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 418.0
DYD3_k127_5827326_20 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000007993 53.0
DYD3_k127_5827326_21 TIGRFAM prepilin-type N-terminal cleavage methylation domain - - - 0.0002898 49.0
DYD3_k127_5827326_22 PhoQ Sensor - - - 0.0006342 53.0
DYD3_k127_5827326_23 domain, Protein K09798 - - 0.0007335 51.0
DYD3_k127_5827326_3 Penicillin-binding Protein dimerisation domain K03587,K08384 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004719 400.0
DYD3_k127_5827326_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 382.0
DYD3_k127_5827326_5 COG COG1459 Type II secretory pathway component PulF Cell motility and secretion Intracellular trafficking and secretion K02653 - - 0.000000000000000000000000000000000000000000000000000000000000001261 235.0
DYD3_k127_5827326_6 Bacterial Ig-like domain 2 - - - 0.0000000000000000000000000000000000000000000000000000000000009516 241.0
DYD3_k127_5827326_7 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000001402 205.0
DYD3_k127_5827326_8 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000001769 206.0
DYD3_k127_5827326_9 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.00000000000000000000000000000000000000000000000005906 196.0
DYD3_k127_5883080_0 malic enzyme K00027 - 1.1.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007484 436.0
DYD3_k127_5883080_1 EVE domain - - - 0.0000000000000000000000000000000000000000000000000007661 188.0
DYD3_k127_5883080_2 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000001326 176.0
DYD3_k127_5883080_3 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.0000000000000000000000159 102.0
DYD3_k127_5883080_4 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000001072 96.0
DYD3_k127_5883080_5 Putative amidase domain - - - 0.00000000000009223 84.0
DYD3_k127_5883080_6 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000005114 78.0
DYD3_k127_5883080_7 KH domain K06960 - - 0.0000000000005683 80.0
DYD3_k127_5890480_0 DNA polymerase X family K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008 539.0
DYD3_k127_5890480_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007724 429.0
DYD3_k127_5890480_10 Polysaccharide biosynthesis protein - - - 0.00000000000000000002212 106.0
DYD3_k127_5890480_11 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000001073 90.0
DYD3_k127_5890480_12 -O-antigen - - - 0.00000000000000001913 95.0
DYD3_k127_5890480_13 ABC transporter K02027 - - 0.000000000000001038 91.0
DYD3_k127_5890480_14 PFAM O-antigen polymerase - - - 0.000000000000005988 88.0
DYD3_k127_5890480_15 Stage II sporulation D domain protein K06381 - - 0.0000000000004625 83.0
DYD3_k127_5890480_16 Bacterial PH domain K08981 - - 0.000002366 57.0
DYD3_k127_5890480_17 Glycosyl hydrolases family 25 K07273 - - 0.000004333 59.0
DYD3_k127_5890480_18 - - - - 0.0000386 51.0
DYD3_k127_5890480_19 - - - - 0.00007549 56.0
DYD3_k127_5890480_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 299.0
DYD3_k127_5890480_3 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004392 277.0
DYD3_k127_5890480_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001236 266.0
DYD3_k127_5890480_5 PFAM VanW family protein - - - 0.0000000000000000000000000000000000000000000000000000002873 216.0
DYD3_k127_5890480_6 domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000006709 181.0
DYD3_k127_5890480_7 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000001929 152.0
DYD3_k127_5890480_8 HNH endonuclease - - - 0.00000000000000000000000000000000029 138.0
DYD3_k127_5890480_9 Belongs to the peptidase S11 family K01286,K07258,K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 3.4.16.4 0.0000000000000000000000000002253 128.0
DYD3_k127_6035555_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 574.0
DYD3_k127_6035555_1 TIGRFAM ATP-dependent DNA helicase, RecQ K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 486.0
DYD3_k127_6035555_10 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001221 248.0
DYD3_k127_6035555_11 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000007216 233.0
DYD3_k127_6035555_12 TIGRFAM Nicotinamide mononucleotide transporter PnuC K03811 - - 0.000000000000000000000000000000000000000000000000000000000003652 216.0
DYD3_k127_6035555_13 - - - - 0.00000000000000000000000000000000000000004742 162.0
DYD3_k127_6035555_14 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000518 147.0
DYD3_k127_6035555_15 - K08641 - 3.4.13.22 0.0000000000000000000000000000009714 134.0
DYD3_k127_6035555_16 - - - - 0.00000000000000000000000000005552 128.0
DYD3_k127_6035555_17 Psort location Cytoplasmic, score K07043 - - 0.00000000000000000000000002167 116.0
DYD3_k127_6035555_18 - - - - 0.0000000000000000000000004548 113.0
DYD3_k127_6035555_19 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000001501 78.0
DYD3_k127_6035555_2 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 448.0
DYD3_k127_6035555_20 - - - - 0.0000000000002257 82.0
DYD3_k127_6035555_21 DUF218 domain - - - 0.00000000002748 72.0
DYD3_k127_6035555_3 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 363.0
DYD3_k127_6035555_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 366.0
DYD3_k127_6035555_5 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 355.0
DYD3_k127_6035555_6 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006666 367.0
DYD3_k127_6035555_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001946 284.0
DYD3_k127_6035555_8 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002321 291.0
DYD3_k127_6035555_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007467 271.0
DYD3_k127_6189668_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002958 289.0
DYD3_k127_6189668_1 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000831 280.0
DYD3_k127_6189668_2 Lysyl oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004962 269.0
DYD3_k127_6189668_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000001098 238.0
DYD3_k127_6189668_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07104 - 1.13.11.2 0.0000000000000000000000000000000000000000000009739 169.0
DYD3_k127_6189668_5 Phospholipase_D-nuclease N-terminal - - - 0.00000000002853 67.0
DYD3_k127_6351244_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000006186 96.0
DYD3_k127_6521136_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005401 559.0
DYD3_k127_6521136_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 511.0
DYD3_k127_6521136_10 cheY-homologous receiver domain K03407,K03413 - 2.7.13.3 0.000000000000000000005283 98.0
DYD3_k127_6521136_11 Galactose oxidase, central domain - - - 0.000000000000000000008693 110.0
DYD3_k127_6521136_12 alginic acid biosynthetic process K20276 - - 0.00000000000000004372 98.0
DYD3_k127_6521136_13 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000003663 81.0
DYD3_k127_6521136_14 HNH nucleases - - - 0.000000000000008843 80.0
DYD3_k127_6521136_15 Protein conserved in bacteria K06898,K09121,K09705 - 4.99.1.12 0.00000000000004535 74.0
DYD3_k127_6521136_16 ribosomal large subunit export from nucleus - - - 0.000000000002489 74.0
DYD3_k127_6521136_17 Prokaryotic N-terminal methylation motif K02650 - - 0.0000000006096 66.0
DYD3_k127_6521136_18 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000001081 57.0
DYD3_k127_6521136_19 Prokaryotic N-terminal methylation motif - - - 0.00000008388 60.0
DYD3_k127_6521136_2 PFAM Type II secretion system protein E K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 415.0
DYD3_k127_6521136_20 Putative peptidoglycan binding domain - - - 0.00002865 59.0
DYD3_k127_6521136_21 COG4970 Tfp pilus assembly protein FimT K08084 - - 0.0002886 51.0
DYD3_k127_6521136_22 Domain of unknown function (DUF4082) - - - 0.0003777 53.0
DYD3_k127_6521136_23 Protein of unknown function (DUF1559) K02456 - - 0.0009356 49.0
DYD3_k127_6521136_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 360.0
DYD3_k127_6521136_4 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 328.0
DYD3_k127_6521136_5 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006154,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009156,GO:0009161,GO:0009163,GO:0009164,GO:0009165,GO:0009167,GO:0009168,GO:0009987,GO:0015949,GO:0015950,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0032261,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0043173,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046100,GO:0046101,GO:0046102,GO:0046103,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000143 273.0
DYD3_k127_6521136_6 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001531 274.0
DYD3_k127_6521136_7 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000001609 157.0
DYD3_k127_6521136_8 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000004365 152.0
DYD3_k127_6521136_9 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000003843 129.0
DYD3_k127_6677407_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 298.0
DYD3_k127_6677407_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000001165 64.0
DYD3_k127_6716735_0 Ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 1.945e-271 852.0
DYD3_k127_6716735_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 569.0
DYD3_k127_6716735_10 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000004823 177.0
DYD3_k127_6716735_11 fatty acid hydroxylase - - - 0.0000000000000000000000000000000000000000002361 166.0
DYD3_k127_6716735_12 Isochorismatase family K08281 - 3.5.1.19 0.0000000000000000000000000000000000000219 155.0
DYD3_k127_6716735_13 Cupin domain - - - 0.000000000000000000000000000000000002339 141.0
DYD3_k127_6716735_14 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000003086 142.0
DYD3_k127_6716735_15 DoxX K16937 - 1.8.5.2 0.00000000000000000000000002561 114.0
DYD3_k127_6716735_16 alpha-ribazole phosphatase activity K02226,K07814 - 3.1.3.73 0.0000000000000000000000008466 115.0
DYD3_k127_6716735_17 Conserved repeat domain - - - 0.00000000000000000000000204 120.0
DYD3_k127_6716735_18 - - - - 0.00000000000000000000006706 103.0
DYD3_k127_6716735_19 Peptidase S24-like K03503 - - 0.00000000000000000001072 96.0
DYD3_k127_6716735_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 551.0
DYD3_k127_6716735_20 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.00000000000000000001642 98.0
DYD3_k127_6716735_21 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000001757 97.0
DYD3_k127_6716735_22 - - - - 0.0000000000000000003847 98.0
DYD3_k127_6716735_23 Cysteine-rich secretory protein family - - - 0.000000000000000001488 98.0
DYD3_k127_6716735_24 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000006414 87.0
DYD3_k127_6716735_25 Putative ABC-transporter type IV - - - 0.000000000000001058 89.0
DYD3_k127_6716735_26 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.000000000009745 74.0
DYD3_k127_6716735_27 Protein of unknown function (DUF1152) - - - 0.0000001941 64.0
DYD3_k127_6716735_28 pantothenate kinase activity K09680 - 2.7.1.33 0.0000004815 61.0
DYD3_k127_6716735_29 Sortase (surface protein transpeptidase) K07284 - 3.4.22.70 0.00002782 56.0
DYD3_k127_6716735_3 Lipase maturation factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007707 464.0
DYD3_k127_6716735_30 Protein of unknown function (DUF1559) - - - 0.00041 49.0
DYD3_k127_6716735_4 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007601 301.0
DYD3_k127_6716735_5 Nucleoside 2-deoxyribosyltransferase like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003088 289.0
DYD3_k127_6716735_6 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000169 207.0
DYD3_k127_6716735_7 TIGRFAM methionine-R-sulfoxide reductase K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000004171 188.0
DYD3_k127_6716735_8 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000001883 182.0
DYD3_k127_6716735_9 7,8-dihydro-8-oxoguanine triphosphatase K03574,K17816 GO:0000003,GO:0001669,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008406,GO:0008413,GO:0008584,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022414,GO:0030141,GO:0030515,GO:0031090,GO:0031410,GO:0031668,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0036219,GO:0042221,GO:0042262,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044713,GO:0044714,GO:0045137,GO:0046060,GO:0046061,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046546,GO:0046661,GO:0046686,GO:0046700,GO:0047429,GO:0047693,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0055086,GO:0061458,GO:0070013,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0090304,GO:0097159,GO:0097223,GO:0097708,GO:0099503,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.6.1.55,3.6.1.56 0.000000000000000000000000000000000000000000000001218 179.0
DYD3_k127_6732546_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 462.0
DYD3_k127_6732546_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 295.0
DYD3_k127_6732546_10 - - - - 0.000000666 58.0
DYD3_k127_6732546_11 - K00960 - 2.7.7.6 0.00001315 58.0
DYD3_k127_6732546_12 Tfp pilus assembly protein FimV - - - 0.0002234 53.0
DYD3_k127_6732546_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004356 268.0
DYD3_k127_6732546_3 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006168 258.0
DYD3_k127_6732546_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074,K12257 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000001929 246.0
DYD3_k127_6732546_5 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000005629 174.0
DYD3_k127_6732546_6 dTDP biosynthetic process K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000001294 92.0
DYD3_k127_6732546_7 PFAM sigma-70 region 2 domain protein, Sigma-70 region 4 type 2 K03088 - - 0.00000000000000006226 87.0
DYD3_k127_6732546_8 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.000000000307 69.0
DYD3_k127_6732546_9 thiolester hydrolase activity K06889 - - 0.0000000005705 68.0
DYD3_k127_6987695_0 3-deoxy-7-phosphoheptulonate synthase K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008167 315.0
DYD3_k127_6987695_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000002151 192.0
DYD3_k127_6987695_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000001809 120.0
DYD3_k127_6987695_3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000002145 111.0
DYD3_k127_7019390_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 2.872e-221 715.0
DYD3_k127_7145734_0 Belongs to the DEAD box helicase family K05592,K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 484.0
DYD3_k127_7145734_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 419.0
DYD3_k127_7145734_2 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 325.0
DYD3_k127_7145734_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000005084 279.0
DYD3_k127_7145734_4 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000114 168.0
DYD3_k127_7145734_5 phosphoribosyl-ATP pyrophosphohydrolase - - - 0.00000000000000000004038 101.0
DYD3_k127_7145734_6 Chaperone of endosialidase - - - 0.0000000000000000008437 100.0
DYD3_k127_7204029_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 9.212e-235 744.0
DYD3_k127_7204029_1 Polysaccharide biosynthesis protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 485.0
DYD3_k127_7204029_10 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000000000000000000000000008569 232.0
DYD3_k127_7204029_11 G8 - - - 0.00000000000000000000000000000000000000000000000000000000000001056 245.0
DYD3_k127_7204029_12 PDZ domain (Also known as DHR or GLGF) - - - 0.0000000000000000000000000000000000000000000000000000004065 217.0
DYD3_k127_7204029_13 Glycosyl transferase, family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000001831 196.0
DYD3_k127_7204029_14 AMMECR1 K06990,K09141 - - 0.00000000000000000000000000000000000000000000000006302 188.0
DYD3_k127_7204029_15 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000001274 190.0
DYD3_k127_7204029_16 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000001102 163.0
DYD3_k127_7204029_17 Protein of unknown function (DUF1428) - - - 0.000000000000000000000000000000000000000001518 159.0
DYD3_k127_7204029_18 glycosyl transferase group 1 K13668 - 2.4.1.346 0.0000000000000000000000000000000000000001607 173.0
DYD3_k127_7204029_19 PFAM cyclase family protein K07130 - 3.5.1.9 0.000000000000000000000000000000000000003666 154.0
DYD3_k127_7204029_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0001510,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004808,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016782,GO:0016783,GO:0030488,GO:0032259,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 364.0
DYD3_k127_7204029_20 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000157 145.0
DYD3_k127_7204029_21 Glyoxalase K06996 - - 0.00000000000000000000000000000000002812 142.0
DYD3_k127_7204029_22 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000004225 139.0
DYD3_k127_7204029_23 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000005627 133.0
DYD3_k127_7204029_24 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000003657 128.0
DYD3_k127_7204029_25 Domain of unknown function (DU1801) - - - 0.000000000000000000000000003023 123.0
DYD3_k127_7204029_26 Adenomatosis polyposis coli down-regulated 1 - - - 0.000000000000000000000000003452 119.0
DYD3_k127_7204029_27 PFAM ribosomal protein L17 K02879 - - 0.000000000000000000000002551 106.0
DYD3_k127_7204029_28 Glycosyltransferase like family 2 - - - 0.000000000000000000000004864 118.0
DYD3_k127_7204029_29 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.00000000000000000000001456 103.0
DYD3_k127_7204029_3 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 339.0
DYD3_k127_7204029_31 hydrolase, family 25 - - - 0.0000000000000000000005005 110.0
DYD3_k127_7204029_32 PFAM TspO MBR family K05770 - - 0.00000000000000000003633 98.0
DYD3_k127_7204029_33 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000002321 87.0
DYD3_k127_7204029_34 - - - - 0.000000000000007886 81.0
DYD3_k127_7204029_35 lytic transglycosylase activity K03194 - - 0.00000000000001679 87.0
DYD3_k127_7204029_36 PFAM ADP-ribosylglycohydrolase - - - 0.0000000001273 73.0
DYD3_k127_7204029_37 Polysaccharide biosynthesis protein - - - 0.00000000116 71.0
DYD3_k127_7204029_38 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000001637 60.0
DYD3_k127_7204029_39 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000008634 58.0
DYD3_k127_7204029_4 Phosphoglycerate mutase domain-containing protein. Source PGD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 302.0
DYD3_k127_7204029_40 endocytosis K03068,K20050 - - 0.0000004846 59.0
DYD3_k127_7204029_41 O-antigen ligase like membrane protein - - - 0.00003286 57.0
DYD3_k127_7204029_5 YHYH protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003176 286.0
DYD3_k127_7204029_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000303 267.0
DYD3_k127_7204029_7 DNA-3-methyladenine glycosylase activity K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000004383 250.0
DYD3_k127_7204029_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.000000000000000000000000000000000000000000000000000000000000000001611 232.0
DYD3_k127_7204029_9 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000005925 228.0
DYD3_k127_7228442_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC - - - 2.01e-201 660.0
DYD3_k127_7228442_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000001477 248.0
DYD3_k127_7228442_2 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000122 188.0
DYD3_k127_7228442_3 DoxX K15977 - - 0.00000000000552 74.0
DYD3_k127_7228442_4 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.0000000001653 69.0
DYD3_k127_7228442_5 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins K03217 - - 0.000002845 57.0
DYD3_k127_7228442_6 Protein of unknown function (DUF3592) - - - 0.0001057 53.0
DYD3_k127_795639_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 629.0
DYD3_k127_795639_1 PFAM glycosyl transferase, family 51 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 472.0
DYD3_k127_795639_10 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000001282 93.0
DYD3_k127_795639_11 Membrane - - - 0.0000000000000000009811 100.0
DYD3_k127_795639_12 GIY-YIG catalytic domain - - - 0.00000000000001215 78.0
DYD3_k127_795639_13 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000006507 81.0
DYD3_k127_795639_14 DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.00000000000879 76.0
DYD3_k127_795639_15 Belongs to the UPF0235 family K09131 - - 0.0000000001598 64.0
DYD3_k127_795639_16 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000006291 61.0
DYD3_k127_795639_18 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000001102 55.0
DYD3_k127_795639_19 S-layer homology domain - - - 0.00001555 59.0
DYD3_k127_795639_2 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 441.0
DYD3_k127_795639_20 rRNA binding K02968 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030234,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0042979,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0065003,GO:0065007,GO:0065009,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00008505 48.0
DYD3_k127_795639_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 421.0
DYD3_k127_795639_4 ABC-type multidrug transport system ATPase and permease K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006003 302.0
DYD3_k127_795639_5 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000005505 221.0
DYD3_k127_795639_6 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.00000000000000000000000000000000000000000000000000000003067 215.0
DYD3_k127_795639_7 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000003872 177.0
DYD3_k127_795639_8 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000127 179.0
DYD3_k127_795639_9 RmuC family K09760 - - 0.0000000000000000000000000000000000000171 156.0
DYD3_k127_870538_0 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 464.0
DYD3_k127_870538_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000006367 245.0
DYD3_k127_870538_2 FES K03575 - - 0.000000000000000000000000000000000000000000000000000000000000004322 231.0
DYD3_k127_870538_3 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000008353 216.0
DYD3_k127_870538_4 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.00000000000000000009639 101.0
DYD3_k127_870538_5 UPF0056 membrane protein K05595 - - 0.0000001519 55.0
DYD3_k127_870538_6 PhoQ Sensor - - - 0.000000575 62.0
DYD3_k127_870538_7 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00002185 57.0
DYD3_k127_870538_8 PFAM Bacterial regulatory protein, arsR family K21903 - - 0.00009303 49.0