Overview

ID MAG00991
Name DYD3_bin.71
Sample SMP0027
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order SZUA-252
Family SZUA-252
Genus SZUA-252
Species
Assembly information
Completeness (%) 57.48
Contamination (%) 0.23
GC content (%) 71.0
N50 (bp) 7,471
Genome size (bp) 1,813,382

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1582

Gene name Description KEGG GOs EC E-value Score Sequence
DYD3_k127_1001493_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 9.827e-237 739.0
DYD3_k127_1001493_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 558.0
DYD3_k127_1001493_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 299.0
DYD3_k127_1001493_3 Diguanylate cyclase, GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004593 273.0
DYD3_k127_1001493_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000002399 253.0
DYD3_k127_1001493_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000006 214.0
DYD3_k127_1001493_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000002325 130.0
DYD3_k127_1001493_7 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000003955 109.0
DYD3_k127_1003477_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 6.409e-253 790.0
DYD3_k127_1003477_1 imidazolonepropionase activity K01468 - 3.5.2.7 0.00000005251 66.0
DYD3_k127_101138_0 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001958 259.0
DYD3_k127_101138_1 PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000003558 199.0
DYD3_k127_1049690_0 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 419.0
DYD3_k127_1049690_1 Uncharacterized protein conserved in bacteria (DUF2330) K00347,K21163 GO:0000166,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0010181,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0019842,GO:0030001,GO:0030964,GO:0032553,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0044425,GO:0044464,GO:0048037,GO:0050136,GO:0050662,GO:0051179,GO:0051234,GO:0055114,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:1901265,GO:1901363,GO:1902444,GO:1902494 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000007303 262.0
DYD3_k127_1049690_2 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.00000000000000000000000000000004231 128.0
DYD3_k127_1049690_3 PFAM Isoprenylcysteine carboxyl methyltransferase - - - 0.000000000000000001071 93.0
DYD3_k127_106472_0 Transketolase, pyrimidine binding domain K00162,K00167,K21417 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944,GO:0140030,GO:0140032 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 421.0
DYD3_k127_106472_1 Dehydrogenase E1 component K00161,K00166,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 392.0
DYD3_k127_106472_2 P-type ATPase K01533,K17686 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.4,3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000139 212.0
DYD3_k127_106472_3 thioesterase - - - 0.0000000000000000000000000000000000000000005455 163.0
DYD3_k127_106472_4 e3 binding domain K00658,K09699 GO:0003674,GO:0003824,GO:0004149,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0008289,GO:0009060,GO:0009987,GO:0015980,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016751,GO:0016999,GO:0017144,GO:0019752,GO:0031405,GO:0031406,GO:0032991,GO:0033293,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0048037,GO:0050662,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:0140096,GO:1901363,GO:1901681,GO:1902494,GO:1990204,GO:1990234 2.3.1.168,2.3.1.61 0.0000000000000000000000000000000000000002563 156.0
DYD3_k127_1071506_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 572.0
DYD3_k127_1071506_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 304.0
DYD3_k127_1071506_2 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000002458 128.0
DYD3_k127_1071506_3 NB-ARC domain - - - 0.00000008666 64.0
DYD3_k127_1081795_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 9.169e-196 645.0
DYD3_k127_1081795_1 PFAM NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 494.0
DYD3_k127_1081795_2 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 383.0
DYD3_k127_1081795_3 CBS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001722 279.0
DYD3_k127_1081795_4 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.00000000000000000000000000000000006194 141.0
DYD3_k127_1081795_5 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000142 122.0
DYD3_k127_1081795_7 domain, Protein K03634 - - 0.00007532 55.0
DYD3_k127_1121981_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 423.0
DYD3_k127_1121981_1 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 400.0
DYD3_k127_1121981_10 ApbE family K03734 - 2.7.1.180 0.0002898 49.0
DYD3_k127_1121981_2 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 357.0
DYD3_k127_1121981_3 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 315.0
DYD3_k127_1121981_4 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.000000000000000000000000000000000000000000000002335 186.0
DYD3_k127_1121981_5 PFAM Thiamine pyrophosphate K00170 - 1.2.7.1 0.000000000000000000000000000000000007062 149.0
DYD3_k127_1121981_6 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00169 - 1.2.7.1 0.000000000000000000002092 110.0
DYD3_k127_1121981_7 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.000000002994 69.0
DYD3_k127_1121981_8 Divergent 4Fe-4S mono-cluster K05337 - - 0.00006409 51.0
DYD3_k127_1121981_9 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0001736 54.0
DYD3_k127_1125400_0 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 2.326e-219 698.0
DYD3_k127_1125400_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 482.0
DYD3_k127_1125400_2 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 326.0
DYD3_k127_1125400_3 lipopolysaccharide metabolic process K07502,K08309,K19804,K21572 - - 0.00000000000000000000000000000000000005227 166.0
DYD3_k127_1125400_4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity K02945,K03527 - 1.17.7.4 0.000000000000000000000000000000002594 133.0
DYD3_k127_1125400_5 Sporulation related domain K03749 - - 0.0002231 54.0
DYD3_k127_1142393_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 586.0
DYD3_k127_1142393_1 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 473.0
DYD3_k127_1142393_2 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 387.0
DYD3_k127_1142393_3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008489 350.0
DYD3_k127_1142393_4 TIGRFAM sugar-phosphate isomerase, RpiB LacA LacB family K01808 - 5.3.1.6 0.000000000000000000000000000000000000000002089 160.0
DYD3_k127_1142393_5 Glucose-6-phosphate dehydrogenase subunit - - - 0.0000000000000000001542 104.0
DYD3_k127_1142393_6 Peptidase family M48 - - - 0.0000000000000000003437 97.0
DYD3_k127_1142393_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000281 63.0
DYD3_k127_1156381_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 397.0
DYD3_k127_1156381_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 326.0
DYD3_k127_1156381_10 Tetratricopeptide repeat - - - 0.00003681 56.0
DYD3_k127_1156381_2 Calcineurin-like phosphoesterase K03547 - - 0.00000000000000000000000000000000000000000000000000000000000008183 235.0
DYD3_k127_1156381_3 COG1670 Acetyltransferases, including N-acetylases of - - - 0.0000000000000000000000000000000000000000000000001803 191.0
DYD3_k127_1156381_4 AAA domain - - - 0.0000000000000000000000000000000000000000000003876 190.0
DYD3_k127_1156381_5 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000004942 179.0
DYD3_k127_1156381_6 NUDIX domain - - - 0.0000000000000000000000000000000000000000223 160.0
DYD3_k127_1156381_7 PFAM Haloacid dehalogenase domain protein hydrolase K07025,K20862 - 3.1.3.102,3.1.3.104 0.00000000000000000000000000000000000003943 160.0
DYD3_k127_1156381_9 lactoylglutathione lyase activity - - - 0.0000000000000001592 94.0
DYD3_k127_1209238_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 349.0
DYD3_k127_1209238_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 339.0
DYD3_k127_1209238_2 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.0000000000000000000000000000000002024 146.0
DYD3_k127_1209238_3 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 GO:0003674,GO:0003824,GO:0004126,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006216,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009116,GO:0009119,GO:0009164,GO:0009972,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0019439,GO:0034641,GO:0034655,GO:0034656,GO:0042454,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046087,GO:0046131,GO:0046133,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658 3.5.4.5 0.000000000000000000000005806 118.0
DYD3_k127_1217782_0 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000001585 245.0
DYD3_k127_1217782_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000001671 186.0
DYD3_k127_1217782_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.00000000000000000000000000000000000000000003432 164.0
DYD3_k127_1217782_3 CTP synthase K01937 - 6.3.4.2 0.000000000000000000000000000181 119.0
DYD3_k127_1217782_4 Haem-NO-binding - - - 0.0000000000000000000000003657 114.0
DYD3_k127_1217782_5 ATP hydrolysis coupled proton transport - - - 0.0000000000000000000000007803 120.0
DYD3_k127_1217782_6 Glutamine amidotransferase class-I - - - 0.000000000000002843 82.0
DYD3_k127_1257432_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 2.237e-290 903.0
DYD3_k127_1257432_1 -O-antigen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 331.0
DYD3_k127_1257432_2 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004874 303.0
DYD3_k127_1257432_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000001138 248.0
DYD3_k127_1257432_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000002619 171.0
DYD3_k127_1257432_5 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843,K02849 - - 0.0000000000000000000000001332 119.0
DYD3_k127_1257432_6 deoxyhypusine monooxygenase activity - - - 0.00000000000005295 86.0
DYD3_k127_1283838_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006818 612.0
DYD3_k127_1283838_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 396.0
DYD3_k127_1283838_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002805 372.0
DYD3_k127_1297729_0 PFAM EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000001364 223.0
DYD3_k127_1297729_1 Protein of unknown function (DUF1579) - - - 0.0000000000000000000000000000001381 130.0
DYD3_k127_1308506_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 355.0
DYD3_k127_1308506_1 Evidence 5 No homology to any previously reported sequences K09607 - - 0.000000000000000000000000000000000000000000000000000001532 220.0
DYD3_k127_1308506_2 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000001962 197.0
DYD3_k127_1308506_3 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000009591 127.0
DYD3_k127_1308506_4 cell adhesion involved in biofilm formation - - - 0.00000000000000000000000001208 124.0
DYD3_k127_1341496_0 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 362.0
DYD3_k127_1341496_1 Ferrous iron transport protein B K03977 - - 0.000000000000000000000000000000000000000000002189 168.0
DYD3_k127_1341496_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000001622 74.0
DYD3_k127_1384989_0 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000001174 156.0
DYD3_k127_1384989_1 COG2143 Thioredoxin-related protein K04084 - 1.8.1.8 0.000000000000000000000000000000000009636 144.0
DYD3_k127_1384989_2 - - - - 0.000000000000000000000006605 106.0
DYD3_k127_1384989_3 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000006953 111.0
DYD3_k127_1384989_4 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000003845 66.0
DYD3_k127_1384989_5 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00002599 49.0
DYD3_k127_1385203_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 598.0
DYD3_k127_1385203_1 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 495.0
DYD3_k127_1385203_2 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004712 280.0
DYD3_k127_1385203_3 phosphoribosylformylglycinamidine synthase activity K01952 GO:0003674,GO:0003824,GO:0004642,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0000000000000000000000001175 124.0
DYD3_k127_1400311_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 457.0
DYD3_k127_1400311_2 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000346 243.0
DYD3_k127_1400311_3 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000001056 243.0
DYD3_k127_1400311_4 - - - - 0.0000000000000000000000000000000000000000000000000002118 192.0
DYD3_k127_1400311_5 - - - - 0.0000000000000000000000000000000000000000000004819 173.0
DYD3_k127_1400311_6 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.0000000000005176 70.0
DYD3_k127_1422595_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347,K03614 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 319.0
DYD3_k127_1422595_1 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004823 249.0
DYD3_k127_1422595_2 Part of a membrane complex involved in electron transport K03612 - - 0.0000000000000000000000000000000000004788 160.0
DYD3_k127_1422595_3 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000008944 120.0
DYD3_k127_1448283_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 391.0
DYD3_k127_1448283_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000001406 161.0
DYD3_k127_1448283_2 - - - - 0.000000007657 64.0
DYD3_k127_1547532_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 545.0
DYD3_k127_1547532_1 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 377.0
DYD3_k127_1547532_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 318.0
DYD3_k127_1547532_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01945 - 6.3.4.13 0.000000000000000000000000000000000000003722 166.0
DYD3_k127_1567745_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 4.514e-221 695.0
DYD3_k127_1567745_1 DNA helicase K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007429 567.0
DYD3_k127_1567745_2 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 390.0
DYD3_k127_1567745_3 PFAM Major Facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000002738 215.0
DYD3_k127_1567745_4 cytochrome c nitrite reductase K15876 - - 0.00000000000000000000000000000000000000000000002803 196.0
DYD3_k127_1567745_5 peptidyl-tyrosine sulfation K13992 - - 0.00000000000000000000000000000000000003479 156.0
DYD3_k127_1567745_6 PFAM Outer membrane efflux protein K15725 - - 0.00000000001009 77.0
DYD3_k127_1567745_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000318 67.0
DYD3_k127_1650117_0 TIGRFAM polysaccharide deactylase family protein, PEP-CTERM locus subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004442 254.0
DYD3_k127_1650117_2 pectinesterase activity K10117 - - 0.00000001412 60.0
DYD3_k127_1650117_3 Periplasmic binding protein LacI transcriptional regulator - - - 0.0001447 55.0
DYD3_k127_1659115_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007156 526.0
DYD3_k127_1659115_1 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000788 478.0
DYD3_k127_1659115_2 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 449.0
DYD3_k127_1659115_3 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000006598 239.0
DYD3_k127_1659115_4 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000008399 175.0
DYD3_k127_1659115_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000005576 144.0
DYD3_k127_1659115_6 alpha-ribazole phosphatase activity K01834 - 5.4.2.11 0.000000000000000000000000000000002488 139.0
DYD3_k127_1659115_7 OST-HTH/LOTUS domain - - - 0.0000000000001209 74.0
DYD3_k127_1686956_0 MutL protein K00854 - 2.7.1.17 3.197e-217 683.0
DYD3_k127_1686956_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 543.0
DYD3_k127_1686956_2 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 391.0
DYD3_k127_1686956_3 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 316.0
DYD3_k127_1686956_4 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 291.0
DYD3_k127_1686956_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000002404 235.0
DYD3_k127_1686956_6 - - - - 0.00000000000000000000000000000000000000000000000000000003401 204.0
DYD3_k127_1686956_7 Octanoyltransferase K03800 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 6.3.1.20 0.000000000000002836 85.0
DYD3_k127_1692060_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 3.55e-290 902.0
DYD3_k127_1692060_1 AMP-binding enzyme K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 510.0
DYD3_k127_1692060_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 493.0
DYD3_k127_1692060_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 408.0
DYD3_k127_1692060_4 Glycosyl transferases group 1 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 315.0
DYD3_k127_1692060_5 PFAM Glycosyl transferases group 1 K13668 - 2.4.1.346 0.0000000000000000000000000000000000000000000000000000000000000000000000001962 258.0
DYD3_k127_1692060_6 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000008552 211.0
DYD3_k127_1692060_7 Protein of unknown function (DUF3485) - - - 0.0005298 45.0
DYD3_k127_1738367_0 PFAM carboxyl transferase K01969,K15052 - 2.1.3.15,6.4.1.3,6.4.1.4 8.527e-232 728.0
DYD3_k127_1738367_1 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 586.0
DYD3_k127_1738367_10 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06020 GO:0003674,GO:0003824,GO:0005488,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:2000112,GO:2000113 3.6.3.25 0.0000000000000000000000000000000000000000000377 171.0
DYD3_k127_1738367_11 Pregnancy-associated plasma protein-A - - - 0.00000000000000000000000000003027 124.0
DYD3_k127_1738367_12 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.00000000000000000000001206 110.0
DYD3_k127_1738367_13 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000018 115.0
DYD3_k127_1738367_14 amine dehydrogenase activity - - - 0.000000000000000001552 93.0
DYD3_k127_1738367_15 acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 0.000000000001192 81.0
DYD3_k127_1738367_16 multi-organism process K03195 - - 0.0000000001072 72.0
DYD3_k127_1738367_17 Tetratricopeptide repeat - - - 0.0000000001963 70.0
DYD3_k127_1738367_2 Biotin carboxylase C-terminal domain K01968,K13777 - 6.4.1.4,6.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 434.0
DYD3_k127_1738367_3 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 398.0
DYD3_k127_1738367_4 Peptidase family M50 K06212,K06402 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 365.0
DYD3_k127_1738367_5 PFAM pyruvate carboxyltransferase K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009953 333.0
DYD3_k127_1738367_6 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007152 325.0
DYD3_k127_1738367_7 translation release factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008965 264.0
DYD3_k127_1738367_8 Enoyl-CoA hydratase/isomerase K13766,K13779 - 4.2.1.18,4.2.1.57 0.00000000000000000000000000000000000000000000000000000000000000000001045 261.0
DYD3_k127_1738367_9 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000002783 212.0
DYD3_k127_1753417_0 Transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002548 290.0
DYD3_k127_1753417_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000006546 100.0
DYD3_k127_175674_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 292.0
DYD3_k127_175674_1 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001879 246.0
DYD3_k127_175674_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000001531 162.0
DYD3_k127_175674_3 Phosphodiester glycosidase - - - 0.0000000000000000000000000000003976 137.0
DYD3_k127_1766001_0 PFAM Type II secretion system protein E K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005792 392.0
DYD3_k127_1766001_1 Helix-hairpin-helix motif K02237 - - 0.0000000009663 70.0
DYD3_k127_1783603_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 1.439e-236 752.0
DYD3_k127_1783603_1 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 344.0
DYD3_k127_1783603_2 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000008858 174.0
DYD3_k127_1790173_0 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000002076 180.0
DYD3_k127_1790173_1 peptidase activity - - - 0.0000000000000000000000000000000007365 145.0
DYD3_k127_1790173_2 Belongs to the ompA family - - - 0.000000000000000000002119 99.0
DYD3_k127_1790173_3 gas vesicle protein - - - 0.000004995 55.0
DYD3_k127_17957_0 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007887 257.0
DYD3_k127_17957_1 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000009158 177.0
DYD3_k127_1808668_0 TIGRFAM stage V sporulation protein E, cell division protein FtsW K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001915 286.0
DYD3_k127_1808668_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K01924,K02563 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.227,6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000004589 270.0
DYD3_k127_1808668_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000003214 189.0
DYD3_k127_1808668_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.000000000000000000000000002462 113.0
DYD3_k127_1808668_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000001849 66.0
DYD3_k127_1828556_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 600.0
DYD3_k127_1828556_1 Dienelactone hydrolase family K06999 - - 0.0000000000000000000000000000000000000000000000000002731 212.0
DYD3_k127_1828556_2 [2Fe-2S] binding domain K03518,K04107 - 1.2.5.3,1.3.7.9 0.00000000000000000002849 91.0
DYD3_k127_1828556_3 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.000000000000000004675 91.0
DYD3_k127_1828556_4 PFAM AMP-dependent synthetase and ligase K00666 - - 0.00000000004321 74.0
DYD3_k127_1832754_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 356.0
DYD3_k127_1832754_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 327.0
DYD3_k127_1832754_2 Belongs to the pseudouridine synthase RsuA family K06178,K06182 - 5.4.99.21,5.4.99.22 0.000000000000000000000000000000000000000000001137 173.0
DYD3_k127_1832754_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000006508 177.0
DYD3_k127_1870244_0 Fibronectin-binding protein - - - 0.00000000000000000000000000000000000001488 163.0
DYD3_k127_1870244_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 0.000000000000000000000000374 110.0
DYD3_k127_1870244_2 SMART Tetratricopeptide - - - 0.00000000000000002227 96.0
DYD3_k127_1917260_0 Sodium Bile acid symporter family K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 490.0
DYD3_k127_1917260_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 419.0
DYD3_k127_1917260_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 325.0
DYD3_k127_1917260_3 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000009042 238.0
DYD3_k127_1917260_4 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000051 237.0
DYD3_k127_1917260_5 Protein of unknown function (DUF354) K09726 - - 0.00000000000000000000000000000000000000001185 164.0
DYD3_k127_1917260_6 Low molecular weight phosphatase family - - - 0.00000000000000000000000000000000000008971 147.0
DYD3_k127_1917260_7 DNA-binding transcription factor activity K03892,K21903 - - 0.0000000000000000000000000000009926 126.0
DYD3_k127_1917260_9 Capsule assembly protein Wzi - - - 0.000000000000267 83.0
DYD3_k127_1948092_0 Insulinase (Peptidase family M16) K07263 - - 6.148e-286 906.0
DYD3_k127_1948092_1 ATP-grasp domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 374.0
DYD3_k127_1949530_0 Deoxyribodipyrimidine photo-lyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 580.0
DYD3_k127_1949530_1 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 540.0
DYD3_k127_1949530_2 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000000000000000000000000000003186 210.0
DYD3_k127_1949530_3 cold-shock protein K03704 - - 0.0000000000000000000000000001544 115.0
DYD3_k127_1949530_4 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity K00303 - 1.5.3.1 0.000000000000000000002673 94.0
DYD3_k127_1955151_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 313.0
DYD3_k127_1955151_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002386 279.0
DYD3_k127_1955151_2 PFAM Uracil DNA glycosylase superfamily K21929 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000005438 256.0
DYD3_k127_1955151_3 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000001328 224.0
DYD3_k127_1955151_4 cytochrome C - - - 0.00000000004389 74.0
DYD3_k127_1955151_5 glyoxalase III activity - - - 0.000047 50.0
DYD3_k127_1970493_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003432 339.0
DYD3_k127_2001765_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1277.0
DYD3_k127_2001765_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 366.0
DYD3_k127_2001765_2 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 327.0
DYD3_k127_2001765_3 E1-E2 ATPase K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 321.0
DYD3_k127_2001765_4 SNARE associated Golgi protein - - - 0.0000000000000000002962 99.0
DYD3_k127_2006709_0 DHH family K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006078 450.0
DYD3_k127_2006709_1 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 433.0
DYD3_k127_2006709_10 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000001076 69.0
DYD3_k127_2006709_11 Preprotein translocase SecG subunit K03075 - - 0.00000002517 67.0
DYD3_k127_2006709_2 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 392.0
DYD3_k127_2006709_3 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004885 370.0
DYD3_k127_2006709_4 Phosphoglycerate kinase K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 336.0
DYD3_k127_2006709_5 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001049 265.0
DYD3_k127_2006709_6 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000001165 203.0
DYD3_k127_2006709_7 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000006999 189.0
DYD3_k127_2006709_8 Adenosine specific kinase K09129 - - 0.00000000000000000000000000000000000000000000005195 188.0
DYD3_k127_2006709_9 short-chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000000000769 110.0
DYD3_k127_2020217_0 Cys/Met metabolism PLP-dependent enzyme K01760,K01761 - 4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 527.0
DYD3_k127_2020217_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 418.0
DYD3_k127_2020217_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 375.0
DYD3_k127_2020217_3 VanZ like family - - - 0.00003698 56.0
DYD3_k127_2020923_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.853e-226 715.0
DYD3_k127_2020923_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 575.0
DYD3_k127_2020923_11 Phosphate-selective porin O and P - - - 0.000619 53.0
DYD3_k127_2020923_2 Di-haem oxidoreductase, putative peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009226 312.0
DYD3_k127_2020923_3 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000001222 217.0
DYD3_k127_2020923_4 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000008076 221.0
DYD3_k127_2020923_5 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000002517 197.0
DYD3_k127_2020923_6 Cell wall formation K00075 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008762,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0055114,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 1.3.1.98 0.000000000000000000000000000000000000000000000000003348 203.0
DYD3_k127_2020923_7 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000001039 138.0
DYD3_k127_2020923_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000717 124.0
DYD3_k127_2020923_9 glyoxalase III activity - - - 0.00000000442 66.0
DYD3_k127_2041964_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 8.237e-218 715.0
DYD3_k127_2041964_1 PFAM Amidohydrolase 3 - - - 0.00000000000000000000000007714 111.0
DYD3_k127_2049464_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001861 284.0
DYD3_k127_2049464_1 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000009111 182.0
DYD3_k127_2049464_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.00000000000000000000000000000000000001459 153.0
DYD3_k127_2049942_0 gluconolactonase activity K01053 - 3.1.1.17 3.383e-201 646.0
DYD3_k127_2049942_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000007038 189.0
DYD3_k127_2049942_2 Cupin 2, conserved barrel domain protein K11477 - - 0.00000000000000000000000000000000000000000206 158.0
DYD3_k127_2055516_0 Carbon-nitrogen hydrolase K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001187 262.0
DYD3_k127_2055516_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000002952 190.0
DYD3_k127_2066533_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007779 592.0
DYD3_k127_2066533_1 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000001589 128.0
DYD3_k127_2066533_2 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000001323 125.0
DYD3_k127_2066533_3 Tetratricopeptide repeat - - - 0.0000000000000000000001762 114.0
DYD3_k127_2066533_4 SMART protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.00000002599 66.0
DYD3_k127_2066533_5 COG3209 Rhs family protein - - - 0.0002012 57.0
DYD3_k127_2076435_0 Belongs to the peptidase M16 family K07263 - - 3.257e-258 830.0
DYD3_k127_2076435_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005916 522.0
DYD3_k127_2076435_2 Ring hydroxylating alpha subunit (catalytic domain) K00479 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044 400.0
DYD3_k127_2076435_3 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000004887 241.0
DYD3_k127_2076435_4 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000002469 174.0
DYD3_k127_2090274_0 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 454.0
DYD3_k127_2090274_1 CHAD domain containing protein - - - 0.00000000000000000000000000000000000000000000000002989 198.0
DYD3_k127_2090274_2 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000003715 192.0
DYD3_k127_2127351_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000004748 259.0
DYD3_k127_2127351_1 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000006376 115.0
DYD3_k127_2127351_2 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000002157 100.0
DYD3_k127_2135751_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 571.0
DYD3_k127_2135751_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008733 427.0
DYD3_k127_2135751_2 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000001177 209.0
DYD3_k127_2135751_3 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 0.0000000000000000000000002699 124.0
DYD3_k127_2135751_4 PFAM S-layer homology domain - - - 0.0004806 52.0
DYD3_k127_2154926_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000000001863 192.0
DYD3_k127_2154926_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000006001 100.0
DYD3_k127_2154926_2 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000000000000000000169 91.0
DYD3_k127_2154926_3 Histidine kinase-like ATPases - - - 0.00002443 47.0
DYD3_k127_2171180_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000001612 171.0
DYD3_k127_2171180_1 Acetyltransferase (GNAT) domain - - - 0.000000001272 67.0
DYD3_k127_2171180_2 Gaf domain K03832 - - 0.000000003032 63.0
DYD3_k127_2178785_0 AAA ATPase K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001878 466.0
DYD3_k127_2178785_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000005839 204.0
DYD3_k127_2178785_2 PFAM Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000634 146.0
DYD3_k127_2178785_3 Major facilitator superfamily - - - 0.000000001554 71.0
DYD3_k127_2178785_4 - - - - 0.00000004525 64.0
DYD3_k127_2219104_0 ABC transporter transmembrane region K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003315 253.0
DYD3_k127_2219104_1 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000004559 240.0
DYD3_k127_2219104_2 YCII-related domain - - - 0.0000000000000000000000000004198 125.0
DYD3_k127_2219104_3 transferase activity, transferring acyl groups K15520 - 2.3.1.189 0.000000000000000000003496 106.0
DYD3_k127_2219104_4 - - - - 0.00000003252 56.0
DYD3_k127_223769_0 Amino acid permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 545.0
DYD3_k127_223769_1 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000005645 228.0
DYD3_k127_223769_2 Cold-shock protein K03704 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000005832 110.0
DYD3_k127_227663_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 377.0
DYD3_k127_227663_1 Metallopeptidase family M24 - - - 0.000000000000000000000000000000000000000000000000000000000000000001032 236.0
DYD3_k127_227663_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000005913 190.0
DYD3_k127_2287997_0 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.00000000000000000000000000647 123.0
DYD3_k127_2287997_1 Methicillin resistance protein - - - 0.0000003895 63.0
DYD3_k127_2310838_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 404.0
DYD3_k127_2310838_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002607 254.0
DYD3_k127_2310838_2 Dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000002332 233.0
DYD3_k127_2310838_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000111 201.0
DYD3_k127_2310838_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.0000000000000000000000000000000000000006691 163.0
DYD3_k127_2310838_5 protein maturation K13628 - - 0.000000000000000000000000000003966 124.0
DYD3_k127_2310838_6 - - - - 0.000000000000000000000002155 117.0
DYD3_k127_2310838_7 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.000000000000000000000832 98.0
DYD3_k127_2310876_0 serine-type peptidase activity K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 388.0
DYD3_k127_2310876_1 Metal-dependent phosphohydrolase, HD region - - - 0.00000000000000000000000000000000000000000000000000000002041 207.0
DYD3_k127_2310876_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000005234 214.0
DYD3_k127_2310876_3 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000496 83.0
DYD3_k127_2333758_0 HI0933-like protein - - - 4.232e-228 731.0
DYD3_k127_2333758_1 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000673 506.0
DYD3_k127_2333758_2 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 475.0
DYD3_k127_2333758_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K00187 - 1.2.7.1,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 389.0
DYD3_k127_2333758_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 373.0
DYD3_k127_2333758_5 Peptidase family M54 K06974 - - 0.00000000000000000000000000000000000005902 150.0
DYD3_k127_2333758_6 Glycine cleavage H-protein - - - 0.00000000000000003386 83.0
DYD3_k127_2333758_7 Glycine cleavage H-protein - - - 0.00000000000002375 81.0
DYD3_k127_2333758_8 Bacterial regulatory proteins, tetR family - - - 0.00000005133 63.0
DYD3_k127_2339441_0 response regulator K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 362.0
DYD3_k127_2339441_1 Histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000005224 221.0
DYD3_k127_2345035_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 385.0
DYD3_k127_2368658_0 Immune inhibitor A peptidase M6 - - - 0.0000000000000000000000000000000000000000000001204 192.0
DYD3_k127_2376673_0 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000004354 120.0
DYD3_k127_2378839_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 482.0
DYD3_k127_2378839_1 8-amino-7-oxononanoate synthase activity K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 467.0
DYD3_k127_2378839_2 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 339.0
DYD3_k127_2378839_3 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 343.0
DYD3_k127_2378839_4 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008571 323.0
DYD3_k127_2378839_5 NmrA-like family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000003053 242.0
DYD3_k127_2378839_6 cellulase activity - - - 0.00000000000000000000000000000000000000000000005846 192.0
DYD3_k127_2378839_7 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.000000000000007062 88.0
DYD3_k127_2378839_8 Transport and Golgi organisation 2 - - - 0.00000000000001093 84.0
DYD3_k127_2410557_0 phosphohistidine phosphatase, SixA K08296 - - 0.000000000000000000000000008776 117.0
DYD3_k127_2410557_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000001268 55.0
DYD3_k127_2417059_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000001657 97.0
DYD3_k127_2417059_1 prephenate dehydrogenase (NADP+) activity K00077,K00210,K06410,K14170,K16182 - 1.1.1.169,1.3.1.12,4.2.1.51,5.4.99.5 0.00000052 57.0
DYD3_k127_2437644_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 629.0
DYD3_k127_2437644_1 Ribonuclease E/G family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005432 507.0
DYD3_k127_2437644_2 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 385.0
DYD3_k127_2437644_3 endonuclease activity K07451 - - 0.00000000000000000000000000000000000000000000003287 190.0
DYD3_k127_2437644_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000004329 122.0
DYD3_k127_2437644_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000004201 88.0
DYD3_k127_2437644_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000004062 64.0
DYD3_k127_25154_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 370.0
DYD3_k127_25154_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000001321 111.0
DYD3_k127_25154_2 Putative regulatory protein - - - 0.000000000000000000000002859 104.0
DYD3_k127_2517154_0 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007862 491.0
DYD3_k127_2517154_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 420.0
DYD3_k127_2517154_2 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.00000000000000000000000000000000000000000000000004331 184.0
DYD3_k127_2517154_3 Predicted membrane protein (DUF2231) - - - 0.00000000000892 73.0
DYD3_k127_2530450_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000964 311.0
DYD3_k127_2530450_1 PFAM YicC-like family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000001372 214.0
DYD3_k127_2530450_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000002018 201.0
DYD3_k127_2530450_3 Tetratricopeptide repeat - - - 0.00001213 51.0
DYD3_k127_2563231_0 Aldehyde dehydrogenase family K00128,K00135 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 580.0
DYD3_k127_2563231_1 Pyridine nucleotide-disulphide oxidoreductase K00529 - 1.18.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 476.0
DYD3_k127_2563231_2 ABC transporter K06022,K06158,K10834 - 3.6.3.29,3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 434.0
DYD3_k127_2563231_3 Dehydrogenase E1 component K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006029 334.0
DYD3_k127_2563231_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001745 261.0
DYD3_k127_2563231_5 - - - - 0.00002219 50.0
DYD3_k127_2565126_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 577.0
DYD3_k127_2565126_1 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000001084 260.0
DYD3_k127_2565126_2 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000004956 222.0
DYD3_k127_2565126_3 PFAM Iron dependent repressor, metal binding and dimerisation domain - - - 0.000000000000000000005629 100.0
DYD3_k127_2565126_4 alginic acid biosynthetic process - - - 0.0000000000008838 83.0
DYD3_k127_2565126_5 FeoA K04758 - - 0.0000000008423 70.0
DYD3_k127_2565126_6 - - - - 0.000001164 53.0
DYD3_k127_2657485_0 AAA domain - - - 3.53e-257 816.0
DYD3_k127_2657485_1 Helix-hairpin-helix class 2 (Pol1 family) motifs - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 351.0
DYD3_k127_2657485_2 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000001197 267.0
DYD3_k127_2657485_3 - - - - 0.0000000000000000000000000000000000001708 156.0
DYD3_k127_2657485_4 EVE domain - - - 0.0000000000000000000000000000000000009283 159.0
DYD3_k127_2657485_5 Uncharacterized conserved protein (DUF2277) - - - 0.0000000000000000000000000000000004375 133.0
DYD3_k127_2660141_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 420.0
DYD3_k127_2660141_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 321.0
DYD3_k127_2660141_2 DUF167 K09131 - - 0.0000000003752 66.0
DYD3_k127_2660141_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000001003 61.0
DYD3_k127_2700396_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005948 266.0
DYD3_k127_2700396_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000003003 188.0
DYD3_k127_2700396_2 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000001381 96.0
DYD3_k127_2700396_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000003907 81.0
DYD3_k127_2700396_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000001282 81.0
DYD3_k127_2700396_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000005216 80.0
DYD3_k127_2700396_6 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.00000000002368 72.0
DYD3_k127_2700536_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 3.965e-215 677.0
DYD3_k127_2700536_1 Translation elongation factor K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 467.0
DYD3_k127_2700536_2 Belongs to the EPSP synthase family. MurA subfamily K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 452.0
DYD3_k127_2700536_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 402.0
DYD3_k127_2700536_4 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001554 258.0
DYD3_k127_2700536_5 Domains FehydlgC, FeS, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000002273 220.0
DYD3_k127_2700536_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000002205 199.0
DYD3_k127_2700536_7 Binds the 23S rRNA K02909 - - 0.000000000000000000003415 106.0
DYD3_k127_2703314_0 Sigma-70 region 2 - - - 0.00000000000000000000000000000000000000000000000008868 194.0
DYD3_k127_2703314_1 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000102 128.0
DYD3_k127_2703314_2 YCII-related domain - - - 0.00000000000000000000000007224 118.0
DYD3_k127_2703314_3 peptidyl-tyrosine sulfation - - - 0.0000000000116 69.0
DYD3_k127_2721836_0 Carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 334.0
DYD3_k127_2721836_1 Protein of unknown function (DUF1211) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006414 263.0
DYD3_k127_2721836_2 Acetyltransferase, gnat family K22477 - 2.3.1.1 0.0000000000000000000000000005836 130.0
DYD3_k127_2721836_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.00000000000000000000000003285 112.0
DYD3_k127_2721836_5 Catalyzes the transfer of an acetyl group from acetyl- CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring K18816 - 2.3.1.82 0.000000000000000000001985 105.0
DYD3_k127_2721836_6 PFAM Abortive infection protein K07052 - - 0.000000000000000000002965 104.0
DYD3_k127_2721836_7 peptidoglycan turnover - - - 0.000000000000000000008885 104.0
DYD3_k127_2721836_8 CAAX protease self-immunity K07052 - - 0.00000003844 66.0
DYD3_k127_2759980_0 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 317.0
DYD3_k127_2759980_1 Cytochrome C assembly protein K02195 - - 0.000000000000000000000000000000000000000001417 174.0
DYD3_k127_2759980_2 secreted hydrolase - - - 0.0000000000000000000000000000000000000002 158.0
DYD3_k127_2759980_3 COG1131 ABC-type multidrug transport system, ATPase component K02193 - 3.6.3.41 0.00000000000000000000000000002257 122.0
DYD3_k127_2759980_4 ThiF family K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000006825 111.0
DYD3_k127_2759980_5 Lipocalin-like domain - - - 0.000000000000001217 85.0
DYD3_k127_2759980_6 PFAM Cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000001416 79.0
DYD3_k127_2797205_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 580.0
DYD3_k127_2797205_1 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000003811 129.0
DYD3_k127_2797205_2 Bacterial regulatory protein, arsR family - - - 0.000000000000000000000000002088 117.0
DYD3_k127_2797205_3 Polymer-forming cytoskeletal - - - 0.00005483 55.0
DYD3_k127_2797205_4 Putative zinc-finger - - - 0.0006609 49.0
DYD3_k127_2812031_0 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 376.0
DYD3_k127_2812031_1 Subtilase family K14645 - - 0.000000000000000000000000000000000000000000000001044 197.0
DYD3_k127_2812031_2 PFAM Phosphoglycerate mutase K22305 - 3.1.3.3 0.000000000000000000000000000005776 136.0
DYD3_k127_2812031_3 Amidohydrolase family - - - 0.000000000000000000000002883 115.0
DYD3_k127_2812031_4 PFAM Abortive infection protein K07052 - - 0.0000000000000000000009247 96.0
DYD3_k127_2886403_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 2.003e-219 698.0
DYD3_k127_2886403_1 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 613.0
DYD3_k127_2886403_10 Enoyl-(Acyl carrier protein) reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000004121 222.0
DYD3_k127_2886403_11 Transcriptional regulator - - - 0.00000000000000000000000000004262 125.0
DYD3_k127_2886403_12 SnoaL-like domain - - - 0.0000000000000003918 87.0
DYD3_k127_2886403_13 PFAM ATPase, BadF BadG BcrA BcrD type - - - 0.0003847 46.0
DYD3_k127_2886403_2 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 558.0
DYD3_k127_2886403_3 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005531 476.0
DYD3_k127_2886403_4 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 463.0
DYD3_k127_2886403_5 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 404.0
DYD3_k127_2886403_6 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 389.0
DYD3_k127_2886403_7 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009797 386.0
DYD3_k127_2886403_8 BadF/BadG/BcrA/BcrD ATPase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 323.0
DYD3_k127_2886403_9 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008065 276.0
DYD3_k127_2910035_0 Belongs to the ompA family K20276 - - 0.000000000000000000008945 107.0
DYD3_k127_2910035_1 Bacterial regulatory proteins, tetR family - - - 0.000000001462 64.0
DYD3_k127_2912061_0 PFAM Glycosyl transferase, group 1 K08256 - 2.4.1.345 0.0000000000000000000000000000000000000000000000000000000000000000000001018 254.0
DYD3_k127_2912061_1 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000005771 108.0
DYD3_k127_2951282_0 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 364.0
DYD3_k127_2951282_1 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000001758 269.0
DYD3_k127_2951282_2 DoxX - - - 0.00000000000000000000000000000000595 142.0
DYD3_k127_2951282_3 Antibiotic biosynthesis monooxygenase - - - 0.00000005374 61.0
DYD3_k127_2951282_4 Cupin 2, conserved barrel domain protein - - - 0.0000001815 60.0
DYD3_k127_2951282_5 Ricin-type beta-trefoil K01218 - 3.2.1.78 0.0000002165 63.0
DYD3_k127_2951282_6 Pregnancy-associated plasma protein-A - - - 0.000404 53.0
DYD3_k127_2966882_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 360.0
DYD3_k127_2966882_1 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005398 320.0
DYD3_k127_2966882_2 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000007361 126.0
DYD3_k127_3046944_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 414.0
DYD3_k127_3046944_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003248 283.0
DYD3_k127_3046944_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000002666 245.0
DYD3_k127_3046944_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000002421 224.0
DYD3_k127_3046944_4 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008194,GO:0008289,GO:0008610,GO:0008654,GO:0008915,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019637,GO:0019897,GO:0019898,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000754 205.0
DYD3_k127_3046944_5 3-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000006046 128.0
DYD3_k127_3065922_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004927 273.0
DYD3_k127_3065922_1 PFAM HD domain - - - 0.000000000000000000000000000000000000000000135 181.0
DYD3_k127_3065922_2 Histidine Phosphotransfer domain K03407 - 2.7.13.3 0.000000001654 69.0
DYD3_k127_3097455_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 505.0
DYD3_k127_3097455_1 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 441.0
DYD3_k127_3097455_10 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000002098 88.0
DYD3_k127_3097455_11 Tetratricopeptide repeat - - - 0.0000000000000002948 85.0
DYD3_k127_3097455_12 C4-type zinc ribbon domain K07164 - - 0.00006016 52.0
DYD3_k127_3097455_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006093 327.0
DYD3_k127_3097455_3 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 340.0
DYD3_k127_3097455_4 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 327.0
DYD3_k127_3097455_5 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003904 283.0
DYD3_k127_3097455_6 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000005172 215.0
DYD3_k127_3097455_7 KR domain - - - 0.000000000000000000000000000000000000000000001552 178.0
DYD3_k127_3097455_8 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000002324 153.0
DYD3_k127_3097455_9 AsmA-like C-terminal region K07289,K09800 - - 0.0000000000000001428 93.0
DYD3_k127_3147148_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 419.0
DYD3_k127_3147148_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 340.0
DYD3_k127_3147148_2 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000001367 236.0
DYD3_k127_3147148_3 Belongs to the sigma-70 factor family K02405 - - 0.00000000000000000000000000000000000000000000000000000000005707 217.0
DYD3_k127_3147148_4 HDOD domain - - - 0.00000000000000000000000000000001181 136.0
DYD3_k127_3147148_5 Histidine kinase K00936 - 2.7.13.3 0.0006129 51.0
DYD3_k127_3148653_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003205 598.0
DYD3_k127_3148653_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 394.0
DYD3_k127_3148653_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.00000000000000000000000000000000000000000000000000000000000002792 220.0
DYD3_k127_3148653_3 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000004749 205.0
DYD3_k127_3148653_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000008044 159.0
DYD3_k127_3148653_5 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000003463 84.0
DYD3_k127_3163063_0 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 323.0
DYD3_k127_3163063_1 Zinc-uptake complex component A periplasmic K02077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 310.0
DYD3_k127_3163063_2 Enoyl-(Acyl carrier protein) reductase K10780 - 1.3.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007167 278.0
DYD3_k127_3163063_3 Tfp pilus assembly protein FimV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002963 275.0
DYD3_k127_3163063_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000002607 239.0
DYD3_k127_3163063_5 Pfam Transposase IS66 - - - 0.000000000000000000000000000000000000000000000000000009264 206.0
DYD3_k127_3163063_6 FAD dependent oxidoreductase K00285,K03153 - 1.4.3.19,1.4.5.1 0.0000000000000000000000000000000000000000000000000004249 202.0
DYD3_k127_3163063_7 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000001599 189.0
DYD3_k127_3163063_8 ABC 3 transport family K02075,K09816 - - 0.00000000000000000000000000000000000000131 164.0
DYD3_k127_3163063_9 SCO1/SenC K07152 - - 0.0000000000000000000000000000000001347 143.0
DYD3_k127_3195016_0 Domain of unknown function (DUF1998) K06877 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 628.0
DYD3_k127_3195016_1 Amino acid permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007148 592.0
DYD3_k127_3195016_10 - - - - 0.0000002186 59.0
DYD3_k127_3195016_11 -acetyltransferase - - - 0.0000276 54.0
DYD3_k127_3195016_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001704 280.0
DYD3_k127_3195016_3 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000008966 245.0
DYD3_k127_3195016_4 dehydratase - - - 0.00000000000000000000000000000000000000000000000000003075 207.0
DYD3_k127_3195016_5 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000008837 186.0
DYD3_k127_3195016_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000007078 169.0
DYD3_k127_3195016_7 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000001244 162.0
DYD3_k127_3195016_8 RNase_H superfamily K07502 - - 0.000000000000000000000000000000002631 151.0
DYD3_k127_3195016_9 Amino acid permease - - - 0.00000000000000004049 83.0
DYD3_k127_3208845_0 Domain of unknown function (DUF5117) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 471.0
DYD3_k127_3208845_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000003395 197.0
DYD3_k127_3208845_2 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.000000000000000000000000000000000000000000007449 171.0
DYD3_k127_3211786_0 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 576.0
DYD3_k127_3211786_1 Tetratricopeptide repeat - - - 0.000000000000000003415 99.0
DYD3_k127_3211786_2 phosphorelay signal transduction system - - - 0.00007277 57.0
DYD3_k127_3226247_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004586 375.0
DYD3_k127_3226247_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 306.0
DYD3_k127_3226247_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000005771 149.0
DYD3_k127_3226247_3 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000005158 141.0
DYD3_k127_3226247_4 Ribosomal L32p protein family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.000000000000000000002658 94.0
DYD3_k127_3226247_5 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.00000000000000000005956 97.0
DYD3_k127_3244886_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000008816 191.0
DYD3_k127_3244886_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003871,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0030312,GO:0032259,GO:0034641,GO:0035999,GO:0036211,GO:0040007,GO:0042084,GO:0042085,GO:0042558,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0050667,GO:0051186,GO:0071704,GO:0071944,GO:0140096,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.14 0.0000000000000000000000000000000000000000000000008068 192.0
DYD3_k127_3244886_2 - - - - 0.00000000000000000000000000000000000000000003628 166.0
DYD3_k127_3244886_3 Confers resistance to fosfomycin and deoxycholate K08161 - - 0.0000000000000000000000000000000007053 138.0
DYD3_k127_3244886_4 Cupin superfamily (DUF985) K09705 - - 0.00000000000000000000000000000008064 137.0
DYD3_k127_3280841_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 427.0
DYD3_k127_3280841_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000001838 109.0
DYD3_k127_3280841_2 Ferredoxin - - - 0.0000000000000000001776 91.0
DYD3_k127_3297015_0 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K09461 - 1.14.13.40 2.339e-320 998.0
DYD3_k127_3297015_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 454.0
DYD3_k127_3297015_2 tryptophan 2,3-dioxygenase activity K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005802 355.0
DYD3_k127_3297015_3 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005476 330.0
DYD3_k127_3297015_4 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 327.0
DYD3_k127_3297015_5 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000007695 179.0
DYD3_k127_3297015_6 Protein of unknown function (DUF3365) - - - 0.0000000000000000000001584 106.0
DYD3_k127_3297545_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 403.0
DYD3_k127_3297545_1 Nitroreductase - - - 0.0001125 48.0
DYD3_k127_3304696_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000001731 263.0
DYD3_k127_3304696_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000007289 253.0
DYD3_k127_3304696_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000003097 163.0
DYD3_k127_3304696_3 Ami_3 K01448 - 3.5.1.28 0.00000000000001655 87.0
DYD3_k127_3304696_4 Sporulation and spore germination - - - 0.000000002007 69.0
DYD3_k127_3415370_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009738 547.0
DYD3_k127_3415370_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 406.0
DYD3_k127_3415370_2 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 296.0
DYD3_k127_3415370_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.0000000000000000000000000000000000000006747 166.0
DYD3_k127_3415370_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000002802 98.0
DYD3_k127_3424464_0 GNAT family acetyltransferase K03802 - 6.3.2.29,6.3.2.30 0.0 1283.0
DYD3_k127_3424464_1 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 538.0
DYD3_k127_3424464_10 - - - - 0.00001161 56.0
DYD3_k127_3424464_11 cellulose binding K00505 - 1.14.18.1 0.0000241 59.0
DYD3_k127_3424464_12 - - - - 0.0009135 49.0
DYD3_k127_3424464_2 Mur ligase family, glutamate ligase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 432.0
DYD3_k127_3424464_3 Peptidase family S51 K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 347.0
DYD3_k127_3424464_4 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009443 294.0
DYD3_k127_3424464_5 Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000157 298.0
DYD3_k127_3424464_6 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000003363 248.0
DYD3_k127_3424464_7 FMN binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000002322 237.0
DYD3_k127_3424464_8 Protein of unknown function (DUF983) - - - 0.0000000000000000000006846 100.0
DYD3_k127_3424464_9 - - - - 0.0000000000009466 83.0
DYD3_k127_3525284_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 7.754e-216 679.0
DYD3_k127_3525284_1 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 GO:0003674,GO:0003824,GO:0004016,GO:0009975,GO:0016829,GO:0016849 2.7.7.85 0.0000000000000000000000000000000000000000000000000000000000000000000001094 258.0
DYD3_k127_3525284_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000006315 252.0
DYD3_k127_3525284_3 PFAM glycosyl transferase family 2 - - - 0.0000000000000000000000001715 114.0
DYD3_k127_3530293_0 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 395.0
DYD3_k127_3530293_1 Prephenate dehydrogenase chorismate mutase K00210 - 1.3.1.12 0.0000000000000000000000000000000004514 140.0
DYD3_k127_3552255_0 pyridine K00322 - 1.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 510.0
DYD3_k127_3552255_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 431.0
DYD3_k127_3552255_2 HAD superfamily (subfamily IG) hydrolase 5'-Nucleotidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 358.0
DYD3_k127_3552255_3 glucosamine-1-phosphate N-acetyltransferase activity K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000009119 229.0
DYD3_k127_3552255_4 COGs COG0674 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000001721 201.0
DYD3_k127_3552255_5 PFAM Rhomboid family protein - - - 0.00000000000000000000000000000000000000000000001274 194.0
DYD3_k127_3560225_0 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 310.0
DYD3_k127_3560225_1 maltose binding K02027,K17329 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 306.0
DYD3_k127_3560225_2 PFAM binding-protein-dependent transport systems inner membrane component K02025,K17242 - - 0.00000000000000000000000000000000001799 145.0
DYD3_k127_3560225_3 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0002986 51.0
DYD3_k127_3598072_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.0000000000000000000000000000000000000000000411 177.0
DYD3_k127_3598072_1 Two component regulator propeller - - - 0.0002057 54.0
DYD3_k127_3640401_0 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003667 260.0
DYD3_k127_3640401_1 Cytochrome c - - - 0.00000000000000000000000000000000003648 142.0
DYD3_k127_3640401_2 Methionine biosynthesis protein MetW - - - 0.00000000000000000000003905 106.0
DYD3_k127_367543_0 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.0000000000000000000000000000000000000000000000000000000001995 207.0
DYD3_k127_367543_1 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.00000000000000000000000000000000000000000000001224 188.0
DYD3_k127_367543_2 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.000000000000000000000000000000001135 137.0
DYD3_k127_3691059_0 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000002443 190.0
DYD3_k127_3691059_1 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.000000000000000000000000000000000000000000001543 179.0
DYD3_k127_3700562_0 Methylenetetrahydrofolate reductase K00297,K00547,K00548 - 1.5.1.20,2.1.1.10,2.1.1.13 2.036e-211 679.0
DYD3_k127_3700562_1 Electron transfer flavoprotein domain K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000004365 244.0
DYD3_k127_3700562_2 Bacterial trigger factor protein (TF) C-terminus K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000938 215.0
DYD3_k127_3700562_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000001551 199.0
DYD3_k127_3700562_4 electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000007691 126.0
DYD3_k127_3715035_0 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005651 354.0
DYD3_k127_3715035_1 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 346.0
DYD3_k127_3715035_2 - - - - 0.00000000000000000000000000000000000000000000000000007032 207.0
DYD3_k127_3715035_3 - - - - 0.0000000000000004738 88.0
DYD3_k127_3715035_4 Sigma-70, region 4 K03088 - - 0.00000000006932 70.0
DYD3_k127_3762682_0 ABC transporter - - - 2.113e-196 626.0
DYD3_k127_3762682_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 398.0
DYD3_k127_3762682_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 354.0
DYD3_k127_3762682_3 Protein of unknown function (DUF3798) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 365.0
DYD3_k127_3762682_4 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000003505 211.0
DYD3_k127_3762682_5 COG2143 Thioredoxin-related protein - - - 0.000000000000000000000000002196 119.0
DYD3_k127_3762682_6 Major Facilitator Superfamily - - - 0.00000004436 65.0
DYD3_k127_3769683_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 578.0
DYD3_k127_3769683_1 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000002441 171.0
DYD3_k127_3769683_2 Maf-like protein K06287 - - 0.00000000000000000000000000000000006148 147.0
DYD3_k127_3769683_3 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.000000009479 62.0
DYD3_k127_3772214_0 inorganic phosphate transmembrane transporter activity K02037,K02038 GO:0008150,GO:0040007,GO:0044110,GO:0044116,GO:0044117,GO:0044403,GO:0044419,GO:0051704 - 0.00000000000000000000000000000000000000000000000000000000000008244 216.0
DYD3_k127_3772214_1 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000000004683 202.0
DYD3_k127_3772214_2 Dual specificity phosphatase, catalytic domain - - - 0.0000000000000000000001222 109.0
DYD3_k127_3772214_3 Beta-lactamase superfamily domain - - - 0.00000000000000000000733 105.0
DYD3_k127_3772214_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000008071 56.0
DYD3_k127_3779582_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005751 287.0
DYD3_k127_3779582_1 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000001717 164.0
DYD3_k127_3809915_0 PFAM peptidase M24 - - - 0.0000000000000000000000000000000000000000005256 166.0
DYD3_k127_3809915_1 diguanylate cyclase - - - 0.0000000006109 71.0
DYD3_k127_382278_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046 474.0
DYD3_k127_382278_1 PglZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 471.0
DYD3_k127_382278_2 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001005 293.0
DYD3_k127_382278_3 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003446 267.0
DYD3_k127_3856268_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 376.0
DYD3_k127_3856268_1 ATP:ADP antiporter activity K01932,K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 370.0
DYD3_k127_3856268_2 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 332.0
DYD3_k127_3856268_3 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001514 287.0
DYD3_k127_3856268_4 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000007029 252.0
DYD3_k127_3856268_5 Prolyl oligopeptidase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000008748 249.0
DYD3_k127_3856268_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000004445 160.0
DYD3_k127_3856268_7 Sigma-70 region 2 K03088 - - 0.000000000000000000000000006018 117.0
DYD3_k127_3856268_8 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000709 98.0
DYD3_k127_3876448_0 Probable zinc-ribbon domain - - - 0.0000000000000000000000000000004659 126.0
DYD3_k127_3876448_1 Ser Thr phosphatase family protein K01081,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000002213 124.0
DYD3_k127_3876448_2 Cold-shock protein K03704 - - 0.0000000000000000006598 89.0
DYD3_k127_3883527_0 cytochrome C peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 474.0
DYD3_k127_3883527_1 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 466.0
DYD3_k127_3883527_2 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008357 329.0
DYD3_k127_3883527_3 FtsZ-dependent cytokinesis - - - 0.00000000000000000000000000000000000000000000000000000000000001463 222.0
DYD3_k127_3883527_4 Peptidase M56 - - - 0.00000000000000000000000003999 123.0
DYD3_k127_3883527_5 cellulase activity - - - 0.00000000000003145 87.0
DYD3_k127_3883527_6 - - - - 0.00000001235 68.0
DYD3_k127_3890810_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 332.0
DYD3_k127_3890810_1 heme binding K08642,K21472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001079 271.0
DYD3_k127_3890810_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000001661 135.0
DYD3_k127_3890810_3 oxidoreductase activity K01181,K08651 - 3.2.1.8,3.4.21.66 0.00000000627 65.0
DYD3_k127_3892097_0 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 456.0
DYD3_k127_3892097_1 Isochorismate synthase K02361,K02552 - 5.4.4.2 0.00000000000000005674 82.0
DYD3_k127_3899083_0 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000494 279.0
DYD3_k127_3899083_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000009481 187.0
DYD3_k127_3899083_2 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000007224 143.0
DYD3_k127_3899083_4 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.000000000000000007002 89.0
DYD3_k127_3899083_5 Transmembrane secretion effector - - - 0.0000000000005057 76.0
DYD3_k127_3899083_6 Damage-inducible protein DinB - - - 0.0000000001921 69.0
DYD3_k127_3905283_0 DNA polymerase III alpha subunit K02337,K14162 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 382.0
DYD3_k127_3905283_1 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356,K03503 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000008538 200.0
DYD3_k127_3905283_2 - - - - 0.000000000000000000000000000000000000000000003768 179.0
DYD3_k127_3905283_3 impB/mucB/samB family K02346 - 2.7.7.7 0.000000000000000006436 97.0
DYD3_k127_3905283_4 Transposase and inactivated derivatives - - - 0.00000000000006419 75.0
DYD3_k127_3926011_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 1.922e-236 764.0
DYD3_k127_3926011_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 327.0
DYD3_k127_3926011_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009144 280.0
DYD3_k127_3926011_3 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000001616 117.0
DYD3_k127_3963986_0 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 373.0
DYD3_k127_3963986_1 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 351.0
DYD3_k127_3963986_2 Protein of unknown function (DUF3485) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 316.0
DYD3_k127_3963986_3 Polysaccharide biosynthesis protein K03328 - - 0.000000000000000000000000000000000000000000000000000000001016 220.0
DYD3_k127_3963986_4 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000003454 183.0
DYD3_k127_3963986_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000293 183.0
DYD3_k127_3963986_6 Heparinase II/III N-terminus - - - 0.00000000000000000004456 106.0
DYD3_k127_3989014_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 304.0
DYD3_k127_3989014_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000004206 238.0
DYD3_k127_3989014_2 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.00000000000000000000000000000007349 131.0
DYD3_k127_3989014_3 Radical SAM - - - 0.000000000000000000000000554 119.0
DYD3_k127_4000308_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 410.0
DYD3_k127_4000308_1 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 374.0
DYD3_k127_4000308_2 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 369.0
DYD3_k127_4000308_3 Amino acid amide ABC transporter ATP-binding protein 1, HAAT family K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 313.0
DYD3_k127_4000308_4 ABC transporter, ATP-binding protein K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004778 301.0
DYD3_k127_4000308_5 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.000000000000000000000000000000000000000000002635 180.0
DYD3_k127_4000308_6 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000001427 145.0
DYD3_k127_4000308_7 peptidylprolyl isomerase K03769,K07533 - 5.2.1.8 0.000000000000000006864 96.0
DYD3_k127_4000308_8 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000005093 65.0
DYD3_k127_4000308_9 protein trimerization - - - 0.0000005072 62.0
DYD3_k127_4038979_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006542 610.0
DYD3_k127_4038979_1 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 583.0
DYD3_k127_4038979_2 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003914 284.0
DYD3_k127_4038979_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00009331 53.0
DYD3_k127_4071038_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 593.0
DYD3_k127_4071038_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000003661 174.0
DYD3_k127_4071038_2 phosphatidate phosphatase activity K01096,K19302 - 3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.0000000000000000000000000004625 121.0
DYD3_k127_4112056_0 PFAM Aldehyde dehydrogenase K00294 - 1.2.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 617.0
DYD3_k127_4112056_1 - - - - 0.0000000000000000000001657 108.0
DYD3_k127_4123162_0 PFAM Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000001848 225.0
DYD3_k127_4123162_1 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000003891 205.0
DYD3_k127_4129622_0 Phosphoenolpyruvate phosphomutase K01637 - 4.1.3.1 5.462e-201 634.0
DYD3_k127_4129622_1 Malate synthase K01638 - 2.3.3.9 5.344e-196 618.0
DYD3_k127_4129622_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000002147 236.0
DYD3_k127_4134581_0 PFAM Peptidase C1A, papain - - - 0.0000000000000000000000002793 123.0
DYD3_k127_4134581_1 oligosaccharyl transferase activity - - - 0.0006794 49.0
DYD3_k127_4138712_0 DAHP synthetase I family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 545.0
DYD3_k127_4138712_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 505.0
DYD3_k127_4138712_2 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 428.0
DYD3_k127_4138712_3 PFAM peptidase M13 K01415 - 3.4.24.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006064 327.0
DYD3_k127_4138712_4 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000501 216.0
DYD3_k127_4138712_5 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000008642 88.0
DYD3_k127_4138963_0 RecG wedge domain K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007066 466.0
DYD3_k127_4138963_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009789 353.0
DYD3_k127_4138963_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022607,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0051258,GO:0051301,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000003687 215.0
DYD3_k127_4138963_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000001475 189.0
DYD3_k127_4138963_4 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000119 128.0
DYD3_k127_4138963_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000002703 97.0
DYD3_k127_4138963_6 - - - - 0.00000000000000002106 92.0
DYD3_k127_4171080_0 Prokaryotic cytochrome b561 - - - 1.465e-233 743.0
DYD3_k127_4171080_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000007221 202.0
DYD3_k127_4171080_2 crp fnr family K01420 - - 0.0000000000000000000000000000000000000000000000001148 188.0
DYD3_k127_4171080_3 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000001154 164.0
DYD3_k127_4184798_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 481.0
DYD3_k127_4184798_1 PFAM glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 430.0
DYD3_k127_4184798_2 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000002677 118.0
DYD3_k127_4184798_3 Protein of unknown function (DUF502) - - - 0.000000000000000004754 88.0
DYD3_k127_4194441_0 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 376.0
DYD3_k127_4194441_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000000000000000005517 134.0
DYD3_k127_4194441_2 Glycosyl transferases group 1 - - - 0.000000000000004307 77.0
DYD3_k127_4214914_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 2.011e-201 646.0
DYD3_k127_4214914_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000002287 101.0
DYD3_k127_4216388_0 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 487.0
DYD3_k127_4216388_1 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000002373 272.0
DYD3_k127_4216388_2 PFAM PHP domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000005875 218.0
DYD3_k127_4216388_3 Tetratricopeptide repeat - - - 0.000000000000000000000000003834 130.0
DYD3_k127_4216388_4 Tetratricopeptide repeats - - - 0.00000000157 72.0
DYD3_k127_4237644_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001029 280.0
DYD3_k127_4237644_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000001695 177.0
DYD3_k127_4237644_2 TPR repeat - - - 0.000000000000000000000000000000000000000000004011 173.0
DYD3_k127_4237644_3 outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000000000003834 99.0
DYD3_k127_4275577_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 470.0
DYD3_k127_4275577_1 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 403.0
DYD3_k127_4275577_10 Polysaccharide biosynthesis protein K03328 - - 0.00000000000000271 89.0
DYD3_k127_4275577_11 O-antigen polymerase - - - 0.0000000000002916 83.0
DYD3_k127_4275577_2 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000001768 222.0
DYD3_k127_4275577_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000003557 208.0
DYD3_k127_4275577_4 PFAM lipopolysaccharide biosynthesis - - - 0.0000000000000000000000000000000000000000000000004922 193.0
DYD3_k127_4275577_5 Polysaccharide biosynthesis/export protein - - - 0.0000000000000000000000000000000003832 153.0
DYD3_k127_4275577_6 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000346 138.0
DYD3_k127_4275577_7 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.0000000000000000000000000007502 129.0
DYD3_k127_4275577_8 Glycosyltransferase like family 2 - - - 0.0000000000000000000000001589 125.0
DYD3_k127_4275577_9 O-Antigen ligase - - - 0.00000000000000000003509 107.0
DYD3_k127_4349786_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000005415 240.0
DYD3_k127_4349786_1 Tetratricopeptide repeat - - - 0.0000003069 60.0
DYD3_k127_4349786_2 Domain of unknown function (DUF4837) - - - 0.00004061 51.0
DYD3_k127_4359075_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 8.477e-197 629.0
DYD3_k127_4359075_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 436.0
DYD3_k127_4359075_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000003515 264.0
DYD3_k127_4359075_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000006244 135.0
DYD3_k127_4359075_4 Binds directly to 16S ribosomal RNA K02968 - - 0.00008977 49.0
DYD3_k127_4390768_0 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008719 359.0
DYD3_k127_4390768_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 330.0
DYD3_k127_4390768_2 lipoprotein transporter activity K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 322.0
DYD3_k127_4390768_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 303.0
DYD3_k127_4390768_4 Amidinotransferase K01482 - 3.5.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
DYD3_k127_4390768_5 Belongs to the thiolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000002321 231.0
DYD3_k127_4390768_6 3-hydroxyacyl-CoA dehydrogenase K00074 GO:0003674,GO:0003824,GO:0003857,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0008691,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 1.1.1.157 0.000000000000000000000000000000000000000000005186 186.0
DYD3_k127_4390768_7 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000001745 139.0
DYD3_k127_4390768_8 outer membrane efflux protein - - - 0.0000000001773 73.0
DYD3_k127_4390768_9 Glycosyl transferase family 41 - - - 0.0006023 53.0
DYD3_k127_4401556_0 Cytochrome c554 and c-prime K03620 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007565 304.0
DYD3_k127_4401556_1 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.000000000000000000000000000000000000000000000000000000004388 204.0
DYD3_k127_4401556_2 amine dehydrogenase activity K21449 - - 0.0000000000000000000000000000000003199 139.0
DYD3_k127_4412640_0 transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 329.0
DYD3_k127_4412640_1 Conserved hypothetical protein 698 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001111 268.0
DYD3_k127_4412640_2 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000256 249.0
DYD3_k127_4412640_3 acetyltransferase K18566 - - 0.000000000000000000000000000000000001174 152.0
DYD3_k127_4412640_4 Protein of unknown function (DUF2892) - - - 0.00000000000000000009757 96.0
DYD3_k127_4419055_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 552.0
DYD3_k127_4419055_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007916 375.0
DYD3_k127_4419055_10 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000001969 194.0
DYD3_k127_4419055_11 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000001739 173.0
DYD3_k127_4419055_12 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000001021 171.0
DYD3_k127_4419055_13 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000002276 165.0
DYD3_k127_4419055_14 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000002247 153.0
DYD3_k127_4419055_15 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000007477 147.0
DYD3_k127_4419055_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000001719 141.0
DYD3_k127_4419055_17 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000002148 137.0
DYD3_k127_4419055_18 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000003768 144.0
DYD3_k127_4419055_19 PFAM ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000001061 140.0
DYD3_k127_4419055_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 295.0
DYD3_k127_4419055_20 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000008012 118.0
DYD3_k127_4419055_21 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000001084 110.0
DYD3_k127_4419055_22 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000001911 117.0
DYD3_k127_4419055_23 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000137 104.0
DYD3_k127_4419055_24 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000005045 77.0
DYD3_k127_4419055_25 Belongs to the bacterial ribosomal protein bL36 family K02919 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000008448 68.0
DYD3_k127_4419055_26 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00001054 57.0
DYD3_k127_4419055_27 Glycosyl hydrolase-like 10 - - - 0.0001077 51.0
DYD3_k127_4419055_3 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000155 285.0
DYD3_k127_4419055_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0000028,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006446,GO:0006450,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015935,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031554,GO:0031564,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0045727,GO:0045903,GO:0045947,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990145,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001289 258.0
DYD3_k127_4419055_5 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000003938 258.0
DYD3_k127_4419055_6 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000003333 225.0
DYD3_k127_4419055_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000001059 212.0
DYD3_k127_4419055_8 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000001268 211.0
DYD3_k127_4419055_9 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000003728 229.0
DYD3_k127_4481564_0 Cytochrome C assembly protein - - - 1.156e-210 679.0
DYD3_k127_4481564_1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 554.0
DYD3_k127_4481564_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 530.0
DYD3_k127_4481564_3 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 326.0
DYD3_k127_4481564_4 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000009879 187.0
DYD3_k127_4481564_5 Transposase - - - 0.000000000000000000002244 104.0
DYD3_k127_4499498_0 to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 437.0
DYD3_k127_4499498_1 Penicillin-binding Protein dimerisation domain K03587,K08384,K08724,K12552,K12556 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 378.0
DYD3_k127_4499498_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 315.0
DYD3_k127_4499498_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003872 309.0
DYD3_k127_4499498_4 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000004277 222.0
DYD3_k127_4506854_0 dehydrogenase e1 component K00164 - 1.2.4.2 5.039e-263 823.0
DYD3_k127_4506854_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00382 - 1.8.1.4 4.058e-196 621.0
DYD3_k127_4506854_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00627,K00658 - 2.3.1.12,2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 466.0
DYD3_k127_4506854_3 - - - - 0.00000000007555 72.0
DYD3_k127_4510831_0 N-acetylglucosaminylinositol deacetylase activity K22136 - - 1.143e-236 759.0
DYD3_k127_4510831_1 virion core protein (lumpy skin disease virus) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 432.0
DYD3_k127_4510831_2 Sodium:solute symporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 424.0
DYD3_k127_4510831_3 Transcription factor zinc-finger - - - 0.000000000000000000000000000001673 136.0
DYD3_k127_4510831_4 DinB superfamily - - - 0.000000000000000000000000000008939 130.0
DYD3_k127_4510831_5 Rhomboid family K19225 - 3.4.21.105 0.00000000000000007707 91.0
DYD3_k127_4513746_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 465.0
DYD3_k127_4513746_1 Riboflavin biosynthesis protein RibD K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 329.0
DYD3_k127_4513746_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001064 269.0
DYD3_k127_4513746_3 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000008941 233.0
DYD3_k127_4513746_4 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000001471 220.0
DYD3_k127_4513746_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000001356 191.0
DYD3_k127_4513746_6 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000003661 170.0
DYD3_k127_4513746_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000004333 120.0
DYD3_k127_4513746_8 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000002623 91.0
DYD3_k127_452175_0 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005643 353.0
DYD3_k127_452175_1 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000000000000006034 171.0
DYD3_k127_452175_2 polysaccharide deacetylase - - - 0.000000000000000000000000005295 125.0
DYD3_k127_4563134_0 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008605 360.0
DYD3_k127_4563134_1 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 0.0000000000000000000000000000000000000000000000000000000006402 211.0
DYD3_k127_4563134_2 helix_turn_helix, cAMP Regulatory protein K21564 - - 0.00000000000000000000000000007049 125.0
DYD3_k127_4575460_0 4Fe-4S binding domain - - - 3.813e-259 828.0
DYD3_k127_4575460_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000948 471.0
DYD3_k127_4575460_2 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002487 269.0
DYD3_k127_4575460_3 GAF domain-containing protein K08968 - 1.8.4.14 0.00000000000000000000000000000000000000114 171.0
DYD3_k127_4575460_4 DinB superfamily - - - 0.0000000000000000000000000000000002235 149.0
DYD3_k127_4575460_5 phosphohistidine phosphatase, SixA - - - 0.000000000000000000000000002882 121.0
DYD3_k127_4575460_6 Helix-hairpin-helix domain K04477 - - 0.000004933 49.0
DYD3_k127_4575460_7 Methyltransferase domain - - - 0.00002937 50.0
DYD3_k127_4578609_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000002059 166.0
DYD3_k127_4578609_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000001128 115.0
DYD3_k127_4623517_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 5.027e-225 721.0
DYD3_k127_4623517_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000005261 288.0
DYD3_k127_4623517_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000001014 254.0
DYD3_k127_4623517_3 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000001027 238.0
DYD3_k127_4623517_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000004733 198.0
DYD3_k127_4623517_5 Divergent PAP2 family K09775 - - 0.00000000000000000000000000000002275 134.0
DYD3_k127_4623517_6 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000006298 123.0
DYD3_k127_4623517_7 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000002657 69.0
DYD3_k127_4623517_8 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.000008111 59.0
DYD3_k127_4638053_0 Carbon-nitrogen hydrolase K13566 - 3.5.1.3 0.000000000000000000000000000000000000000000000000001198 190.0
DYD3_k127_4638053_1 Histidine kinase K14986 - 2.7.13.3 0.00000000000000000000000000000000000000009885 171.0
DYD3_k127_4666882_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 462.0
DYD3_k127_4666882_1 Transglycosylase SLT domain K08307,K12204 - - 0.0000000000000000000000000000000000000000000000000000000000000000001266 244.0
DYD3_k127_4666882_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000003865 179.0
DYD3_k127_4686100_0 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 622.0
DYD3_k127_4686100_1 PFAM sigma-54 factor interaction domain-containing protein K02481,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 404.0
DYD3_k127_4686100_10 - K20326 - - 0.000000000003918 77.0
DYD3_k127_4686100_11 sterol carrier protein - - - 0.000000002156 70.0
DYD3_k127_4686100_12 EamA-like transporter family - - - 0.000000005574 58.0
DYD3_k127_4686100_13 guanyl-nucleotide exchange factor activity K15923 - 3.2.1.51 0.000002021 61.0
DYD3_k127_4686100_14 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0001991 51.0
DYD3_k127_4686100_2 Cytokinin dehydrogenase 1, FAD and cytokinin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002035 252.0
DYD3_k127_4686100_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000004843 228.0
DYD3_k127_4686100_4 pyridoxamine 5'-phosphate K07005 - - 0.000000000000000000000000000000000000000000000000000000000000001948 222.0
DYD3_k127_4686100_5 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000006 199.0
DYD3_k127_4686100_6 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000006324 195.0
DYD3_k127_4686100_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000006356 161.0
DYD3_k127_4686100_8 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000632 170.0
DYD3_k127_4686100_9 Fibronectin type 3 domain - - - 0.000000000000000000002404 110.0
DYD3_k127_4755769_0 radical SAM domain protein - - - 9.774e-207 657.0
DYD3_k127_4755769_1 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 333.0
DYD3_k127_4755769_2 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004856 289.0
DYD3_k127_4764365_0 TIGRFAM ATP-binding cassette protein, ChvD family - - - 2.577e-214 672.0
DYD3_k127_4764365_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 507.0
DYD3_k127_4764365_10 regulatory protein TetR - - - 0.00000000007072 65.0
DYD3_k127_4764365_12 AntiSigma factor - - - 0.0002196 52.0
DYD3_k127_4764365_2 Insulinase (Peptidase family M16) K00960,K07263,K07623 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 437.0
DYD3_k127_4764365_3 Mitochondrial biogenesis AIM24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 406.0
DYD3_k127_4764365_4 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 325.0
DYD3_k127_4764365_5 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000008071 190.0
DYD3_k127_4764365_6 - - - - 0.000000000000009274 84.0
DYD3_k127_4764365_7 - - - - 0.0000000000005482 72.0
DYD3_k127_4764365_8 Protein of unknown function (DUF2905) - - - 0.000000000008344 67.0
DYD3_k127_4764365_9 Putative adhesin - - - 0.00000000001224 76.0
DYD3_k127_4767375_0 M42 glutamyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 385.0
DYD3_k127_4767375_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008976,GO:0009267,GO:0009405,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015968,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0036293,GO:0040007,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0046872,GO:0050896,GO:0051704,GO:0051716,GO:0070482,GO:0071496,GO:0071704,GO:0071944,GO:1901564 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000001089 240.0
DYD3_k127_4767375_2 - - - - 0.0000000000000000000000000000000000000000006583 164.0
DYD3_k127_4767375_3 water channel activity K02440,K06188,K09874 - - 0.00000000000000000000000000000000001411 142.0
DYD3_k127_4767375_4 6-phosphogluconolactonase activity - - - 0.000000000000000000000004957 117.0
DYD3_k127_4767375_5 Tfp pilus assembly protein FimV - - - 0.0000001367 62.0
DYD3_k127_4767375_7 Membrane - - - 0.00001657 55.0
DYD3_k127_4767375_8 Surface antigen - - - 0.0003436 51.0
DYD3_k127_4821252_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008214 351.0
DYD3_k127_4821252_1 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 343.0
DYD3_k127_4825406_0 e3 binding domain K00658,K09699 GO:0003674,GO:0003824,GO:0004149,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0008289,GO:0009060,GO:0009987,GO:0015980,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016751,GO:0016999,GO:0017144,GO:0019752,GO:0031405,GO:0031406,GO:0032991,GO:0033293,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0048037,GO:0050662,GO:0055114,GO:0071704,GO:0072350,GO:0097159,GO:0140096,GO:1901363,GO:1901681,GO:1902494,GO:1990204,GO:1990234 2.3.1.168,2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 338.0
DYD3_k127_4825406_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679,K01744 - 4.2.1.2,4.3.1.1 0.000000000000000000000000000000000000000000000000000009178 194.0
DYD3_k127_4979824_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000007725 250.0
DYD3_k127_4979824_1 PFAM glycoside hydrolase, family 3 domain protein K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000001458 224.0
DYD3_k127_4985288_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 318.0
DYD3_k127_4985288_1 ABC-2 family transporter protein K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000009961 248.0
DYD3_k127_4985288_2 Protein of unknown function, DUF547 - - - 0.0000000000000000000000000000000000000000002259 171.0
DYD3_k127_4985288_3 Protein of unknown function (DUF4058) - - - 0.000005564 56.0
DYD3_k127_4989950_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 335.0
DYD3_k127_4989950_1 Sigma-54 factor interaction domain-containing protein K02481,K07712,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007735 273.0
DYD3_k127_4989950_2 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001075 241.0
DYD3_k127_5045788_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 467.0
DYD3_k127_5045788_1 Fe-S oxidoreductase K11473 - - 0.0000000000000000000000001432 114.0
DYD3_k127_5057254_0 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000085 434.0
DYD3_k127_5057254_1 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000864 362.0
DYD3_k127_5059926_0 Glycosyl transferase family group 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 374.0
DYD3_k127_5059926_1 HEAT repeat - - - 0.00000000000000002078 94.0
DYD3_k127_5059926_2 Tetratricopeptide repeat - - - 0.000000005871 67.0
DYD3_k127_5059926_3 Tetratricopeptide repeat - - - 0.00009844 55.0
DYD3_k127_5101653_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 546.0
DYD3_k127_5101653_1 ATPase associated with various cellular K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007799 393.0
DYD3_k127_5101653_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009559 386.0
DYD3_k127_5101653_3 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001127 279.0
DYD3_k127_5101653_4 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104,K01808,K07566,K20201 - 2.7.7.87,3.1.3.48,3.9.1.2,5.3.1.6 0.00000000000000000000002033 106.0
DYD3_k127_5101653_5 - - - - 0.00001644 58.0
DYD3_k127_5111140_0 Dehydrogenase E1 component K11381 - 1.2.4.4 3.269e-276 871.0
DYD3_k127_5111140_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 565.0
DYD3_k127_5111140_2 Peptidase family M1 domain K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 458.0
DYD3_k127_5111140_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003927 253.0
DYD3_k127_5111140_4 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001303 257.0
DYD3_k127_5111140_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000001183 208.0
DYD3_k127_5111140_6 - K07018 - - 0.0000000000000000000000000000000000001513 151.0
DYD3_k127_5111140_7 Predicted permease K07089 - - 0.000000000000000000000006262 120.0
DYD3_k127_5111140_8 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000606 89.0
DYD3_k127_5111140_9 DinB superfamily - - - 0.0000000000002015 70.0
DYD3_k127_5122072_0 Periplasmic binding protein domain K02058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 366.0
DYD3_k127_5122072_1 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002556 257.0
DYD3_k127_5122072_2 Saccharopine dehydrogenase NADP binding domain K00290 - 1.5.1.7 0.000000000000000000000000000000000000000000004029 171.0
DYD3_k127_5122072_3 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000001139 85.0
DYD3_k127_5164282_0 GTP-binding protein TypA K06207 - - 2.715e-207 668.0
DYD3_k127_5164282_1 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 1.156e-201 661.0
DYD3_k127_5164282_2 Cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 439.0
DYD3_k127_5164282_3 beta-glucosidase activity K05350 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 374.0
DYD3_k127_5164282_4 Glyoxalase bleomycin resistance protein dioxygenase K15975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 383.0
DYD3_k127_5164282_5 stress-induced mitochondrial fusion - - - 0.000000000000000000000000000000000000000000000000000000001733 216.0
DYD3_k127_5164282_6 Appr-1'-p processing enzyme - - - 0.000000000000000000000000000000000000000000000000055 198.0
DYD3_k127_5164282_7 methyltransferase - - - 0.0000000000000000000000000000000000000001664 167.0
DYD3_k127_5164282_8 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000001867 148.0
DYD3_k127_5164282_9 - - - - 0.0000000000000000000000001104 109.0
DYD3_k127_5189388_0 ABC transporter K02021,K06147,K06148,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 579.0
DYD3_k127_5189388_1 - - - - 0.00000000000000000000006738 104.0
DYD3_k127_5189388_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000004366 76.0
DYD3_k127_5200404_0 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 330.0
DYD3_k127_5200404_1 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000003764 245.0
DYD3_k127_5200404_2 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000003951 169.0
DYD3_k127_5200404_3 Glycosyl transferase 4-like domain - - - 0.00000000000007339 86.0
DYD3_k127_5200404_4 FemAB family - - - 0.000000000002159 79.0
DYD3_k127_5200404_5 PFAM ATP-binding region ATPase domain protein - - - 0.00000002768 68.0
DYD3_k127_5209187_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.445e-271 856.0
DYD3_k127_5209187_1 Voltage gated chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 559.0
DYD3_k127_5233830_0 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000001702 244.0
DYD3_k127_5233830_1 hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000003865 179.0
DYD3_k127_5233830_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000009627 178.0
DYD3_k127_5233830_3 Divergent polysaccharide deacetylase K09798 - - 0.0000000000000009006 90.0
DYD3_k127_5233830_4 - - - - 0.0002409 53.0
DYD3_k127_5245839_0 Squalene phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000002053 226.0
DYD3_k127_5245839_1 Squalene/phytoene synthase - - - 0.00000000000000000000000000000000000000000000000000001553 201.0
DYD3_k127_5280089_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009587 277.0
DYD3_k127_5280089_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000006345 240.0
DYD3_k127_5280089_2 tRNA processing K06864 - - 0.0000000000000000000000000000000000000000000000000000006616 216.0
DYD3_k127_5280089_3 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0000000000000000000000000000000000000000000000001619 188.0
DYD3_k127_5280089_4 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000000000000000000002024 157.0
DYD3_k127_5280089_5 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000002415 116.0
DYD3_k127_5280089_7 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000001253 77.0
DYD3_k127_5286669_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 404.0
DYD3_k127_5286669_1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 396.0
DYD3_k127_5286669_10 Tetratricopeptide repeat protein - - - 0.0000207 58.0
DYD3_k127_5286669_11 Tetratricopeptide repeat protein - - - 0.0004772 53.0
DYD3_k127_5286669_12 protein secretion K20276 - - 0.0005039 53.0
DYD3_k127_5286669_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008365 344.0
DYD3_k127_5286669_3 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 318.0
DYD3_k127_5286669_4 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region - - - 0.0000000000000000000000000000000000000000000000005197 191.0
DYD3_k127_5286669_5 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000002223 177.0
DYD3_k127_5286669_6 Domains HisKA, HATPase_c - - - 0.000000000000000000000000000000000000000005723 173.0
DYD3_k127_5286669_7 Sulfite exporter TauE/SafE - - - 0.000000000000000000000000001285 125.0
DYD3_k127_5286669_8 endonuclease activity K07451 - - 0.000000000000000003253 92.0
DYD3_k127_5286669_9 - - - - 0.0000000000001763 85.0
DYD3_k127_5287298_0 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000167 270.0
DYD3_k127_5287298_1 Tetratricopeptide repeat - - - 0.000000000000000000000009285 113.0
DYD3_k127_5326476_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009808 394.0
DYD3_k127_5326476_1 Peptidase family M13 K07386 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 298.0
DYD3_k127_5326476_2 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000002173 201.0
DYD3_k127_5326476_3 PFAM phosphatidate cytidylyltransferase - - - 0.000000000000000001791 97.0
DYD3_k127_5326476_4 PFAM Integral membrane protein DUF92 - GO:0005575,GO:0016020 - 0.000000004203 66.0
DYD3_k127_5330121_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 467.0
DYD3_k127_5330121_1 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.000000000000000000000000000000000000001313 169.0
DYD3_k127_5330121_2 cellulase activity - - - 0.000000000007119 79.0
DYD3_k127_5330121_3 metallopeptidase activity K01317 - 3.4.21.10 0.000005446 60.0
DYD3_k127_5338948_0 surface antigen - - - 0.000000000000000000000000000000000000000145 172.0
DYD3_k127_5338948_1 zinc metalloprotease K11749 GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000001113 155.0
DYD3_k127_5373292_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 343.0
DYD3_k127_5373292_1 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000003531 214.0
DYD3_k127_5373292_2 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.00000000000000000000000000001707 119.0
DYD3_k127_5373292_3 homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000001788 89.0
DYD3_k127_5387646_0 Glycosyltransferase family 20 K16055 - 2.4.1.15,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 425.0
DYD3_k127_5387646_1 CDP-alcohol phosphatidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000001115 222.0
DYD3_k127_5387646_2 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000541 109.0
DYD3_k127_5387646_3 ompA family - - - 0.00008725 54.0
DYD3_k127_5387646_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0005814 51.0
DYD3_k127_5399088_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 3.988e-213 695.0
DYD3_k127_5399088_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 447.0
DYD3_k127_5399088_2 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000003173 231.0
DYD3_k127_5399088_3 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000006097 241.0
DYD3_k127_5399088_4 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000002264 176.0
DYD3_k127_5399088_5 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids K07094 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 - 0.0000000000000000000000000000000001611 154.0
DYD3_k127_5399088_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000002171 64.0
DYD3_k127_5407233_0 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 444.0
DYD3_k127_5407233_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 366.0
DYD3_k127_5407233_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 344.0
DYD3_k127_5407233_3 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008603 291.0
DYD3_k127_5407233_4 His Kinase A (phosphoacceptor) domain K07642 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000344 274.0
DYD3_k127_5407233_5 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.000000000000000000000000000000000000000000000002633 197.0
DYD3_k127_5407233_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K20444 - - 0.00000000000000000000000000000000000000000001826 181.0
DYD3_k127_5407233_7 Phospholipid methyltransferase - - - 0.00000000000000000000000157 119.0
DYD3_k127_5407233_8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000001383 102.0
DYD3_k127_5444394_0 Glycosyl transferase, family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 507.0
DYD3_k127_5444394_1 ABC-type sugar transport system periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 400.0
DYD3_k127_5444394_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K05816 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 305.0
DYD3_k127_5444394_3 PFAM Binding-protein-dependent transport system inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009834 289.0
DYD3_k127_5444394_4 Binding-protein-dependent transport system inner membrane component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000006056 252.0
DYD3_k127_5444394_5 4-epimerase K01628 - 4.1.2.17 0.000000000000000001081 95.0
DYD3_k127_5444394_6 transmembrane transport - - - 0.000000001735 64.0
DYD3_k127_5456391_0 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009716 329.0
DYD3_k127_5456391_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002397 261.0
DYD3_k127_5456391_2 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000003262 155.0
DYD3_k127_547003_0 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009209 403.0
DYD3_k127_547003_1 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000158 250.0
DYD3_k127_547003_2 Domain of unknown function (DUF1905) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009467 246.0
DYD3_k127_547003_3 Belongs to the aspartate glutamate racemases family K01779 - 5.1.1.13 0.000000000000000000000000000000000000000000000001805 180.0
DYD3_k127_547003_4 Protein of unknown function (DUF1697) - - - 0.000001713 59.0
DYD3_k127_5489786_0 Protein conserved in bacteria K06320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005363 251.0
DYD3_k127_5489786_1 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000001492 164.0
DYD3_k127_5489786_2 transferase activity, transferring glycosyl groups - - - 0.000000000000235 79.0
DYD3_k127_5528415_0 DNA topoisomerase II activity K02469 - 5.99.1.3 0.0 1029.0
DYD3_k127_5528415_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009330,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0140097,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 8.302e-285 888.0
DYD3_k127_5528415_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.0000000000000000000000000000000000000000000000000000000000001287 220.0
DYD3_k127_5528415_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000001086 173.0
DYD3_k127_5528415_4 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000000000000003758 164.0
DYD3_k127_5528415_5 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000001287 154.0
DYD3_k127_5528415_6 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.000000000000000000000006332 111.0
DYD3_k127_5528415_7 Membrane proteins related to metalloendopeptidases - - - 0.0000006709 62.0
DYD3_k127_5552591_0 Secretion protein K01993 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004713 365.0
DYD3_k127_5552591_1 Outer membrane efflux protein K12340 - - 0.00000009159 60.0
DYD3_k127_5552591_2 Outer membrane efflux protein K12340 - - 0.000004265 57.0
DYD3_k127_5557289_0 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 471.0
DYD3_k127_5557289_1 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006684 467.0
DYD3_k127_5557289_2 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000372 216.0
DYD3_k127_5557289_3 zinc ion binding K03006,K06252,K11997 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000008644 196.0
DYD3_k127_5557289_4 Type ii and iii secretion system protein K02666 - - 0.0000000000000000000000000000000003291 152.0
DYD3_k127_5557289_5 PFAM response regulator receiver K07657 - - 0.000000000000000000000000008705 126.0
DYD3_k127_5557289_6 pilus assembly protein K02662 - - 0.000000000000000575 92.0
DYD3_k127_5557289_7 Pilus assembly protein PilO K02664 - - 0.0005164 53.0
DYD3_k127_5582432_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 585.0
DYD3_k127_5582432_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 537.0
DYD3_k127_5582432_2 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008096 520.0
DYD3_k127_5582432_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 468.0
DYD3_k127_5582432_4 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 386.0
DYD3_k127_5582432_5 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009801 298.0
DYD3_k127_5582432_6 Bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000000000000000000000000000000000008035 220.0
DYD3_k127_5582432_7 PTS HPr component phosphorylation site K11189 - - 0.0000000000000000000003952 98.0
DYD3_k127_5582432_8 system, mannose fructose sorbose family IID component K02796 - - 0.0000000000000000000005736 105.0
DYD3_k127_5585050_0 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 433.0
DYD3_k127_5585050_1 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 333.0
DYD3_k127_5585050_2 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.00007601 50.0
DYD3_k127_5591385_0 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000136 310.0
DYD3_k127_5591385_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000004124 164.0
DYD3_k127_5591385_2 PFAM glycosyl transferase group 1 - - - 0.00009689 53.0
DYD3_k127_5598124_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 454.0
DYD3_k127_5598124_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008166 317.0
DYD3_k127_5598124_2 Ferrochelatase K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000392 189.0
DYD3_k127_5598124_3 PFAM aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000009762 175.0
DYD3_k127_5607087_0 Malic enzyme, NAD binding domain K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 0.0 1085.0
DYD3_k127_5607087_1 Acetyl-CoA hydrolase/transferase N-terminal domain K01067 - 3.1.2.1 2.252e-216 680.0
DYD3_k127_5607087_10 Protein of unknown function (DUF1203) - - - 0.0000000000001105 75.0
DYD3_k127_5607087_2 Alanine dehydrogenase/PNT, C-terminal domain K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 497.0
DYD3_k127_5607087_3 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008144 448.0
DYD3_k127_5607087_4 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 347.0
DYD3_k127_5607087_5 ABC-2 family transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000008648 233.0
DYD3_k127_5607087_6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000001987 200.0
DYD3_k127_5607087_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.00000000000000000000000000000000000000000000000009144 187.0
DYD3_k127_5607087_8 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.000000000000000000000000000000000000000000000006114 182.0
DYD3_k127_5607087_9 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000001289 163.0
DYD3_k127_5608422_0 Anthranilate synthase component I K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007902 334.0
DYD3_k127_5608422_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 326.0
DYD3_k127_5608422_2 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 311.0
DYD3_k127_5608422_3 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.00000000000000000000000000000000000000000000000000000000006441 214.0
DYD3_k127_5608422_4 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000003679 144.0
DYD3_k127_5635073_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 478.0
DYD3_k127_5635073_1 Probable RNA and SrmB- binding site of polymerase A K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 394.0
DYD3_k127_5635073_2 PFAM PfkB domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007683 297.0
DYD3_k127_5635073_3 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000005276 232.0
DYD3_k127_5710734_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004133 460.0
DYD3_k127_5710734_1 Polysaccharide biosynthesis protein K01711,K15856 - 1.1.1.281,4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 437.0
DYD3_k127_5710734_2 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 311.0
DYD3_k127_5710734_3 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000001153 182.0
DYD3_k127_5710734_4 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.000000000000000000000000000000000000000001222 180.0
DYD3_k127_5710734_5 Tetratricopeptide repeat - - - 0.00000000000000000000000002581 127.0
DYD3_k127_5713071_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 350.0
DYD3_k127_5713071_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000001639 221.0
DYD3_k127_5720941_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 453.0
DYD3_k127_5720941_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 GO:0001676,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003824,GO:0003989,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006417,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009317,GO:0009329,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0017148,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032787,GO:0032991,GO:0034248,GO:0034249,GO:0042759,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:0097159,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:2000112,GO:2000113 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 340.0
DYD3_k127_5720941_2 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003181 245.0
DYD3_k127_5720941_3 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000465 253.0
DYD3_k127_5720941_4 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000006942 116.0
DYD3_k127_5720941_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000002817 112.0
DYD3_k127_5720941_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000001867 102.0
DYD3_k127_5720941_7 Glycoprotease family K14742 - - 0.0000000000001012 82.0
DYD3_k127_5726599_0 Copper amine oxidase N-terminal domain - - - 0.0000000000000000000000003194 110.0
DYD3_k127_5726599_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000001062 108.0
DYD3_k127_5726599_2 RNA polymerase sigma factor - - - 0.00000000000003336 81.0
DYD3_k127_5726599_3 Cupin 2, conserved barrel domain protein - - - 0.000001791 54.0
DYD3_k127_5760892_0 Succinyl-CoA ligase like flavodoxin domain - - - 6.168e-213 688.0
DYD3_k127_5760892_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 525.0
DYD3_k127_5760892_10 Helix-turn-helix domain - - - 0.00000000008804 64.0
DYD3_k127_5760892_11 Membrane - - - 0.00000004149 62.0
DYD3_k127_5760892_12 - - - - 0.000009677 56.0
DYD3_k127_5760892_13 - - - - 0.00001247 56.0
DYD3_k127_5760892_2 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 529.0
DYD3_k127_5760892_3 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 376.0
DYD3_k127_5760892_4 Phosphoesterase, PA-phosphatase related protein - - - 0.0000000000000000000000000000000000000000000000000000000000000003536 241.0
DYD3_k127_5760892_5 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000000000000000000007517 181.0
DYD3_k127_5760892_6 of nitrite reductase and ring-hydroxylating K05710 - - 0.00000000000000000000000005883 116.0
DYD3_k127_5760892_7 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000001739 106.0
DYD3_k127_5760892_8 Iron-sulfur cluster assembly protein - - - 0.000000000002571 70.0
DYD3_k127_5760892_9 Sulfatase-modifying factor enzyme 1 K01176,K01206,K01218,K01219,K01224 - 3.2.1.1,3.2.1.51,3.2.1.78,3.2.1.81,3.2.1.89 0.0000000000514 76.0
DYD3_k127_5779857_0 enoyl-CoA hydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005733 272.0
DYD3_k127_5779857_1 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000615 226.0
DYD3_k127_5779857_2 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000009896 136.0
DYD3_k127_5779857_3 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0002839 44.0
DYD3_k127_5823891_0 Oligoendopeptidase f - - - 3.232e-205 661.0
DYD3_k127_5823891_1 Bacterial protein of unknown function (DUF853) K06915 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 472.0
DYD3_k127_5823891_10 ketosteroid isomerase - - - 0.000000000002505 74.0
DYD3_k127_5823891_11 Outer membrane protein beta-barrel domain - - - 0.0000000001166 72.0
DYD3_k127_5823891_2 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005703 407.0
DYD3_k127_5823891_3 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 310.0
DYD3_k127_5823891_4 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007289 286.0
DYD3_k127_5823891_5 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002241 261.0
DYD3_k127_5823891_6 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000006284 245.0
DYD3_k127_5823891_7 Sortase and related acyltransferases K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000002091 222.0
DYD3_k127_5823891_8 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000001604 195.0
DYD3_k127_5823891_9 Acetyltransferase (GNAT) family - - - 0.00000000000000002505 93.0
DYD3_k127_5838333_0 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 464.0
DYD3_k127_5838333_1 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004831 344.0
DYD3_k127_5838333_2 ATPases associated with a variety of cellular activities K02056,K06400 - 3.6.3.17 0.0000000000000000000000000000000000001793 159.0
DYD3_k127_5838333_3 Branched-chain amino acid ABC transporter, permease protein K02057 - - 0.0002903 54.0
DYD3_k127_5847355_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004998 271.0
DYD3_k127_5847355_1 Peptidase family S49 K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000562 244.0
DYD3_k127_5847355_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.0000000000000000000000001817 108.0
DYD3_k127_5855567_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1238.0
DYD3_k127_5855567_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 7.734e-223 703.0
DYD3_k127_5855567_2 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 524.0
DYD3_k127_5855567_3 UPF0056 inner membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000004841 216.0
DYD3_k127_5855567_4 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000002188 119.0
DYD3_k127_5855567_5 - - - - 0.00001327 53.0
DYD3_k127_5865318_0 Putative Ig domain - - - 0.000000312 63.0
DYD3_k127_5865318_1 esterase - - - 0.000001649 61.0
DYD3_k127_5867314_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 357.0
DYD3_k127_5867314_1 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 - - 0.000000000000000000000000000000004263 140.0
DYD3_k127_5867314_2 - - - - 0.00000000000000000000000004253 109.0
DYD3_k127_5867314_3 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000003182 106.0
DYD3_k127_5874676_0 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 359.0
DYD3_k127_5874676_1 ABC transporter, ATP-binding protein K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001765 273.0
DYD3_k127_5874676_2 - - - - 0.000000000000000000000000000000000000000003016 164.0
DYD3_k127_5874676_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000008638 70.0
DYD3_k127_588138_0 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000008577 149.0
DYD3_k127_588138_1 SpoVG K06412 - - 0.000000000000000000000000001502 114.0
DYD3_k127_588138_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000001351 109.0
DYD3_k127_5912116_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0 1088.0
DYD3_k127_5912116_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 409.0
DYD3_k127_5912116_2 Evidence 5 No homology to any previously reported sequences K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004665 307.0
DYD3_k127_5912116_3 Propeptide_C25 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006467 262.0
DYD3_k127_5912116_4 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000009832 187.0
DYD3_k127_5912116_5 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000004619 164.0
DYD3_k127_5912116_6 Trm112p-like protein K09791 - - 0.0000000001021 74.0
DYD3_k127_5912429_0 adenosine deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 373.0
DYD3_k127_5912429_1 Metallo-beta-lactamase superfamily K01069 GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615 3.1.2.6 0.0000000000000000000000000000000000000000000007743 173.0
DYD3_k127_5912429_2 o-methyltransferase K21377 - 2.1.1.302 0.000000000000000000000000000000000001014 152.0
DYD3_k127_5912429_3 Molybdopterin oxidoreductase Fe4S4 domain K00372 - - 0.00000000000001079 82.0
DYD3_k127_59456_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 8.456e-306 946.0
DYD3_k127_59456_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000172 135.0
DYD3_k127_59456_2 Protein of unknown function (DUF2723) - - - 0.0001645 51.0
DYD3_k127_5977191_0 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000005648 246.0
DYD3_k127_5977191_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000003071 144.0
DYD3_k127_5977191_2 Domain of unknown function (DUF4919) - - - 0.0000000000000000000000371 108.0
DYD3_k127_5977191_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0003504 44.0
DYD3_k127_5998296_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001313 295.0
DYD3_k127_6008561_0 Methyl-accepting chemotaxis protein K03406 - - 0.00001017 57.0
DYD3_k127_6053491_0 Dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 435.0
DYD3_k127_6053491_1 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000003185 190.0
DYD3_k127_6053491_2 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000005387 178.0
DYD3_k127_6053491_3 - - - - 0.000006379 50.0
DYD3_k127_608415_0 TIGRFAM general secretion pathway protein H K08084 - - 0.0005265 51.0
DYD3_k127_6121750_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 471.0
DYD3_k127_6121750_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000005106 111.0
DYD3_k127_6130610_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 399.0
DYD3_k127_6130610_1 Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 355.0
DYD3_k127_6130610_2 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000148 311.0
DYD3_k127_6130610_3 Belongs to the peptidase S11 family K01286,K07258,K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 3.4.16.4 0.0000000000000000000000000000000000000000000000000001533 199.0
DYD3_k127_6130610_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000008115 85.0
DYD3_k127_6130610_5 PFAM Bacterial Ig-like domain (group 2) - - - 0.000000003826 69.0
DYD3_k127_6130610_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07642,K07652,K10681 - 2.7.13.3 0.000002404 62.0
DYD3_k127_6145562_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 515.0
DYD3_k127_6145562_1 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002799 271.0
DYD3_k127_6145562_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000003745 235.0
DYD3_k127_6145562_3 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000001737 213.0
DYD3_k127_6210693_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 284.0
DYD3_k127_6210693_1 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000002542 190.0
DYD3_k127_6210693_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000557 158.0
DYD3_k127_6210693_3 binds to the 23S rRNA K02939 - - 0.000000000000000000000000002153 128.0
DYD3_k127_6210693_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000387 104.0
DYD3_k127_6210693_5 Binds together with S18 to 16S ribosomal RNA K01754,K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 4.3.1.19 0.000000000000000003093 89.0
DYD3_k127_6210693_6 membrane protein (DUF2232) - - - 0.0006267 51.0
DYD3_k127_6246099_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 454.0
DYD3_k127_6246099_1 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000005321 246.0
DYD3_k127_6246099_2 glucan 1,4-alpha-glucosidase activity - - - 0.0000000000000000000000000000000000000000000000000000001173 218.0
DYD3_k127_6246099_3 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000233 196.0
DYD3_k127_6246099_4 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000001279 206.0
DYD3_k127_6246099_5 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000001435 175.0
DYD3_k127_6246099_6 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000004681 161.0
DYD3_k127_6246099_7 Response regulator receiver domain - - - 0.00000000000000000000000000004707 136.0
DYD3_k127_6246099_8 PFAM protein phosphatase 2C domain protein, response regulator receiver K07315 - 3.1.3.3 0.000000000000000000004219 103.0
DYD3_k127_6246099_9 long-chain fatty acid transport protein - - - 0.000008398 58.0
DYD3_k127_6251066_0 - - - - 0.00000000000000000000000000000000000000000000000002291 202.0
DYD3_k127_6298123_0 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 452.0
DYD3_k127_6298123_1 symporter activity K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 349.0
DYD3_k127_6304010_0 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 6.558e-313 1003.0
DYD3_k127_6304010_1 PFAM Aldehyde dehydrogenase family K00128,K00135,K00146,K22187 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.39,1.2.1.79 3.427e-208 661.0
DYD3_k127_6304010_2 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000003788 239.0
DYD3_k127_6304010_3 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000005359 242.0
DYD3_k127_6304010_4 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000004068 145.0
DYD3_k127_6304010_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.0000000000000002419 94.0
DYD3_k127_6304010_7 protein secretion - - - 0.00000000005826 76.0
DYD3_k127_6304010_8 Involved in the TonB-independent uptake of proteins K03641 - - 0.0007533 52.0
DYD3_k127_630543_0 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 2.465e-256 815.0
DYD3_k127_630543_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050497,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 482.0
DYD3_k127_630543_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006493 287.0
DYD3_k127_630543_3 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000007966 231.0
DYD3_k127_630543_4 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000039 156.0
DYD3_k127_630543_5 Protein involved in meta-pathway of phenol degradation - - - 0.00000003106 66.0
DYD3_k127_630543_6 Protein involved in meta-pathway of phenol degradation - - - 0.000132 48.0
DYD3_k127_632312_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 490.0
DYD3_k127_632312_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 397.0
DYD3_k127_632312_2 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843 - - 0.000000000000000000000000000000004205 143.0
DYD3_k127_632312_3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.000000000000000009543 84.0
DYD3_k127_6330867_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006245 445.0
DYD3_k127_6330867_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 GO:0003674,GO:0003824,GO:0004795,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016020,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 402.0
DYD3_k127_6330867_2 TolB amino-terminal domain K03641 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019534,GO:0019904,GO:0022857,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901998 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 301.0
DYD3_k127_6330867_3 Catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000006237 248.0
DYD3_k127_6330867_4 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.00000000000000000000000000000000000000000000001089 194.0
DYD3_k127_6330867_5 PFAM OmpA MotB domain protein K03640 - - 0.0000000000000000000000000000000000000003312 160.0
DYD3_k127_6330867_6 TonB C terminal K03646,K03832 - - 0.0000000000000002413 88.0
DYD3_k127_6355288_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 492.0
DYD3_k127_6355288_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 372.0
DYD3_k127_6355288_10 Resolvase - - - 0.000002217 57.0
DYD3_k127_6355288_11 Modulates RecA activity K03565 - - 0.000004404 50.0
DYD3_k127_6355288_12 Recombinase zinc beta ribbon domain K06400 - - 0.00001262 49.0
DYD3_k127_6355288_2 TIGRFAM competence damage-inducible protein CinA K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 303.0
DYD3_k127_6355288_3 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 289.0
DYD3_k127_6355288_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000008311 236.0
DYD3_k127_6355288_5 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000001965 176.0
DYD3_k127_6355288_6 Roadblock/LC7 domain - - - 0.00000000000000000000000000000000007051 153.0
DYD3_k127_6355288_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000001903 128.0
DYD3_k127_6355288_8 PFAM phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000001224 114.0
DYD3_k127_6355288_9 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000004429 89.0
DYD3_k127_6355422_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000002478 253.0
DYD3_k127_6355422_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000005495 184.0
DYD3_k127_6355422_2 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000002533 86.0
DYD3_k127_6366052_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005983 363.0
DYD3_k127_6366052_1 PFAM PhoH family protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 338.0
DYD3_k127_6366052_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000001142 97.0
DYD3_k127_6366052_3 Protein of unknown function (DUF502) - - - 0.000000000000005491 79.0
DYD3_k127_6366052_4 positive regulation of growth rate K21687,K21688,K21689,K21690,K21691 GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0008150,GO:0009892,GO:0009893,GO:0010035,GO:0010038,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019222,GO:0030955,GO:0031420,GO:0035864,GO:0040008,GO:0040009,GO:0040010,GO:0042221,GO:0043167,GO:0043169,GO:0045927,GO:0046872,GO:0048518,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007 - 0.0000000000005245 71.0
DYD3_k127_6366070_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000001058 204.0
DYD3_k127_6366070_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000001839 114.0
DYD3_k127_6374172_0 Sigma factor PP2C-like phosphatases K04757,K07315 - 2.7.11.1,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 500.0
DYD3_k127_6374172_1 Anti-sigma factor antagonist K04749,K06378 - - 0.0000000000000000000000000000000000002072 150.0
DYD3_k127_6374172_2 Putative glutamine amidotransferase - - - 0.000000000000000008196 98.0
DYD3_k127_6379217_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000005453 251.0
DYD3_k127_6379217_1 Bifunctional nuclease - - - 0.000000000000000000000000000000000000000000000000000002624 205.0
DYD3_k127_6387115_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1002.0
DYD3_k127_6387115_1 Beta-eliminating lyase K01668 - 4.1.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003322 528.0
DYD3_k127_6387115_2 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 403.0
DYD3_k127_6387115_3 Peptide methionine sulfoxide reductase K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000002957 239.0
DYD3_k127_6387115_4 DEAD DEAH box helicase K06877 - - 0.000000000000000002036 85.0
DYD3_k127_6387115_5 - - - - 0.00000000000001325 85.0
DYD3_k127_6391875_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 512.0
DYD3_k127_6391875_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 480.0
DYD3_k127_6391875_2 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007012 325.0
DYD3_k127_6391875_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002109 263.0
DYD3_k127_6391875_4 ZIP Zinc transporter K07238,K11021,K16267 - - 0.0000000000000000000000000000000000000000000000000000000000003575 225.0
DYD3_k127_6391875_5 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.00000000000000000000000000000000000000000000000000000000001049 222.0
DYD3_k127_6391875_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00337,K00338 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000004296 195.0
DYD3_k127_6424827_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 5.877e-200 638.0
DYD3_k127_6424827_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000003375 264.0
DYD3_k127_6424827_2 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000005378 142.0
DYD3_k127_6424827_4 Esterase-like activity of phytase - - - 0.000000000000000000002181 110.0
DYD3_k127_6424827_5 Biotin-requiring enzyme - - - 0.00000000000142 75.0
DYD3_k127_6445728_0 Aminotransferase class-V - GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 316.0
DYD3_k127_6445728_1 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00015,K00058,K16843 - 1.1.1.26,1.1.1.310,1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002421 300.0
DYD3_k127_6445728_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000008035 199.0
DYD3_k127_6445728_3 - - - - 0.000000539 59.0
DYD3_k127_6463179_0 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007888 284.0
DYD3_k127_6463179_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K19340 - - 0.0000000000000000000000000000000000000000000000000000001873 206.0
DYD3_k127_6463179_2 ABC-2 family transporter protein K01992,K19341 - - 0.00000000000000000000000000000000000000001431 169.0
DYD3_k127_6463179_3 FlgD Ig-like domain K13669 - - 0.00000000000000000000000000000000000004016 162.0
DYD3_k127_6463179_4 NnrS protein K07234 - - 0.00000000000000000000000003023 123.0
DYD3_k127_6463179_5 extracellular matrix structural constituent - - - 0.00000001064 68.0
DYD3_k127_6463481_0 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 590.0
DYD3_k127_6463481_1 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 491.0
DYD3_k127_6463481_2 cell volume homeostasis K03316,K11105 GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006884,GO:0008150,GO:0008324,GO:0008361,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0065008,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0090066,GO:0098655,GO:0098660,GO:0098662,GO:0099516,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 311.0
DYD3_k127_6463481_3 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006452 281.0
DYD3_k127_6463481_4 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000007547 226.0
DYD3_k127_6463481_5 PKD domain K01179,K08651 - 3.2.1.4,3.4.21.66 0.0000000000000000000000000000000000000000000000008602 183.0
DYD3_k127_6463481_6 Disulphide bond corrector protein DsbC K04084,K08344 - 1.8.1.8 0.00000000000000000000000000000000000000000000126 179.0
DYD3_k127_6463481_7 Bacterial PH domain - - - 0.00000000000000000005101 104.0
DYD3_k127_6463481_8 base-excision repair, DNA ligation K10776,K10798 GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0070212,GO:0071704,GO:0090304,GO:0140097,GO:1901360,GO:1901564 2.4.2.30,6.5.1.1 0.000001515 57.0
DYD3_k127_6499586_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022613,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0036094,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.1.3.100 0.0000000000000000000000000000000000000000001434 175.0
DYD3_k127_6499586_1 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.0000000000000000000000000000001939 131.0
DYD3_k127_6499586_2 Homodimerisation domain of SGTA K16365 GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006605,GO:0006612,GO:0006620,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0015031,GO:0015833,GO:0016192,GO:0032947,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150 - 0.0000005668 61.0
DYD3_k127_6499586_3 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000008593 61.0
DYD3_k127_6517163_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1340.0
DYD3_k127_6517163_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0 1026.0
DYD3_k127_6517163_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 306.0
DYD3_k127_6517163_3 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000007832 194.0
DYD3_k127_6517163_4 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000001573 126.0
DYD3_k127_6517163_5 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K21103,K21460 - 2.1.1.304,2.1.1.327 0.000000000000000000000000000001247 138.0
DYD3_k127_6517163_6 Hypothetical methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000005564 123.0
DYD3_k127_6517163_7 efflux transmembrane transporter activity - - - 0.000000000000000000000002619 117.0
DYD3_k127_6517163_8 - - - - 0.0000000000000000000006546 100.0
DYD3_k127_6517163_9 Membrane - - - 0.0000000001876 76.0
DYD3_k127_6519826_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 614.0
DYD3_k127_6519826_1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 396.0
DYD3_k127_6519826_2 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000001144 209.0
DYD3_k127_6519826_3 YceI-like domain - - - 0.0000000000000000000000000000000000000000000008635 174.0
DYD3_k127_6519826_4 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000353 132.0
DYD3_k127_6519826_5 PFAM NUDIX hydrolase K03574 - 3.6.1.55 0.0000000000000000000000000004507 119.0
DYD3_k127_6521883_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000004488 171.0
DYD3_k127_6521883_1 ABC transporter, transmembrane K18889 - - 0.0000000000000000000000000000001049 130.0
DYD3_k127_6521883_2 C4-type zinc ribbon domain K07164 - - 0.0000001318 62.0
DYD3_k127_6535459_0 helicase superfamily c-terminal domain K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 432.0
DYD3_k127_6535459_1 COG2041 Sulfite oxidase and related enzymes K00387 - 1.8.3.1 0.00000000004365 66.0
DYD3_k127_6535459_2 tetratricopeptide repeat - - - 0.00001052 58.0
DYD3_k127_6585148_0 Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009565 497.0
DYD3_k127_6585148_1 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 468.0
DYD3_k127_6585148_10 Helix-turn-helix domain protein - - - 0.000000000006337 75.0
DYD3_k127_6585148_11 - - - - 0.0000000000837 68.0
DYD3_k127_6585148_12 - - - - 0.00000001375 63.0
DYD3_k127_6585148_13 lipolytic protein G-D-S-L family - - - 0.000119 54.0
DYD3_k127_6585148_2 membrane protein involved in D-alanine export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 450.0
DYD3_k127_6585148_3 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 436.0
DYD3_k127_6585148_4 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 306.0
DYD3_k127_6585148_5 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003301 246.0
DYD3_k127_6585148_6 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000005047 252.0
DYD3_k127_6585148_8 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000006018 156.0
DYD3_k127_6585148_9 - - - - 0.000000000001593 74.0
DYD3_k127_6600550_0 M42 glutamyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003232 298.0
DYD3_k127_6600550_1 PFAM Amidohydrolase 3 - - - 0.0000000000000000000000000000000000000000000000000000000003051 221.0
DYD3_k127_6600550_2 M42 glutamyl aminopeptidase K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000009373 179.0
DYD3_k127_6600550_3 Glycosyl transferases group 1 - - - 0.0000000000000002471 91.0
DYD3_k127_6600550_4 tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.0000000002327 73.0
DYD3_k127_6607345_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 3.796e-197 629.0
DYD3_k127_6607345_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 572.0
DYD3_k127_6607345_2 PFAM Type II secretion system protein E K02669,K12203 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 414.0
DYD3_k127_6607345_3 ABC 3 transport family K02075,K09816 - - 0.0000000000000000000000000000000000000000000000002625 182.0
DYD3_k127_6607345_4 4-amino-4-deoxy-L-arabinose transferase activity K02277 - 1.9.3.1 0.000000000000000000000000000000000000000004355 174.0
DYD3_k127_6607345_5 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K12276 - - 0.0000000000000000000000001547 123.0
DYD3_k127_6607345_6 Amidohydrolase family - - - 0.0000000002863 62.0
DYD3_k127_6619032_0 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001172 255.0
DYD3_k127_6619032_1 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000000000000003458 198.0
DYD3_k127_6619032_2 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000001189 134.0
DYD3_k127_6623833_0 Asparagine synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 391.0
DYD3_k127_6623833_1 Glycosyl transferases group 1 K21001 - - 0.0000000000000000000000000000000000000001602 165.0
DYD3_k127_6623833_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000004554 168.0
DYD3_k127_6623833_3 Glycosyl transferase family 4 - - - 0.000000000000000000000000000002759 139.0
DYD3_k127_6623833_4 Glycosyl transferase group 1 K00696,K13058 GO:0003674,GO:0003824,GO:0005975,GO:0005984,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0034637,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0071704,GO:1901576 2.4.1.14,2.4.1.246 0.000000000000004356 90.0
DYD3_k127_6648121_0 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001408 287.0
DYD3_k127_6648121_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000004234 267.0
DYD3_k127_6648121_2 DNA restriction-modification system K07317 - 2.1.1.72 0.000000000000000000000000000000000008933 146.0
DYD3_k127_6648121_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.0000000000000000000000000000000001654 153.0
DYD3_k127_6648121_4 Alpha beta hydrolase - - - 0.000000000000000001045 101.0
DYD3_k127_6665606_0 haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000003049 172.0
DYD3_k127_668669_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000006335 262.0
DYD3_k127_668669_1 PFAM Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000002414 196.0
DYD3_k127_668669_2 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000002344 202.0
DYD3_k127_668669_3 HxlR-like helix-turn-helix - - - 0.000000000000000000000000000000000000002474 151.0
DYD3_k127_668669_4 PFAM binding-protein-dependent transport systems inner membrane component K02025,K17242 - - 0.00000000000000003095 84.0
DYD3_k127_6697583_0 Permease MlaE K02066 - - 0.000000000000000000000000005427 118.0
DYD3_k127_6697583_1 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000002958 106.0
DYD3_k127_6702592_0 Phosphoribulokinase / Uridine kinase family K00855,K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.19,2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000001703 252.0
DYD3_k127_6702592_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 GO:0000287,GO:0003674,GO:0003824,GO:0004422,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006166,GO:0006177,GO:0006188,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032261,GO:0032263,GO:0032264,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0043094,GO:0043101,GO:0043167,GO:0043169,GO:0043173,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046040,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.8 0.000000000000000000000000000000000000000000000000000002961 196.0
DYD3_k127_6702592_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000006102 132.0
DYD3_k127_6702592_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000001872 61.0
DYD3_k127_6702592_4 homoserine dehydrogenase K00003 - 1.1.1.3 0.000007298 50.0
DYD3_k127_671688_0 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000000000000000000000001668 245.0
DYD3_k127_671688_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000000000000000000000001346 165.0
DYD3_k127_671688_2 PFAM ABC transporter K09812 - - 0.000000000133 75.0
DYD3_k127_6721379_0 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000005587 253.0
DYD3_k127_6721379_1 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000007715 143.0
DYD3_k127_6721379_2 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.000000000000000000000000000001512 128.0
DYD3_k127_6721379_3 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000009426 112.0
DYD3_k127_6721379_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000001628 92.0
DYD3_k127_6721379_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000006274 96.0
DYD3_k127_6721379_6 Belongs to the UPF0109 family K06960 - - 0.00000000000007241 83.0
DYD3_k127_6721379_7 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000003307 55.0
DYD3_k127_6722581_0 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 346.0
DYD3_k127_6722581_1 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000001058 268.0
DYD3_k127_6722581_2 Phosphoribosyl-ATP pyrophosphohydrolase K02499,K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000002078 214.0
DYD3_k127_6722581_3 Putative zinc-finger K03088 - - 0.000000000000000000000000000000000000000000000003609 191.0
DYD3_k127_6722581_4 Domain of unknown function (DUF1844) - - - 0.000000000000000001186 99.0
DYD3_k127_6722581_5 Outer membrane efflux protein - - - 0.0000000001834 72.0
DYD3_k127_6759331_0 PFAM Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001944 243.0
DYD3_k127_6759331_1 PFAM MOFRL domain protein K11529 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016491,GO:0016661,GO:0016662,GO:0016740,GO:0016772,GO:0043798,GO:0044237,GO:0055114 2.7.1.165 0.000000000000000000000000000000000002662 147.0
DYD3_k127_6759331_2 Histidine kinase K07678 GO:0000155,GO:0000160,GO:0000302,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009636,GO:0009927,GO:0009987,GO:0010033,GO:0010035,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046677,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901700 2.7.13.3 0.00000000000000000000000000000006354 141.0
DYD3_k127_6759331_3 SMART protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.000000000000000000000000009474 123.0
DYD3_k127_6759331_4 STAS domain - - - 0.00000006736 56.0
DYD3_k127_6805324_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1417.0
DYD3_k127_6805324_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 364.0
DYD3_k127_6805324_2 Outer membrane efflux protein - - - 0.000000003432 69.0
DYD3_k127_6816750_0 Isochorismate synthase K02552 - 5.4.4.2 0.0000000000000000000000000000000000002149 156.0
DYD3_k127_6816750_1 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.0000000000000002119 82.0
DYD3_k127_6819762_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K20444 - - 0.000000000000000000000000000000000000000000005935 179.0
DYD3_k127_6819762_1 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000009688 152.0
DYD3_k127_6827972_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 5.619e-226 710.0
DYD3_k127_6827972_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 516.0
DYD3_k127_6827972_2 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000618 455.0
DYD3_k127_6827972_3 acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 419.0
DYD3_k127_6827972_4 PFAM 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 349.0
DYD3_k127_6827972_5 Coenzyme A transferase K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 334.0
DYD3_k127_6827972_6 Coenzyme A transferase K01029 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 286.0
DYD3_k127_6827972_7 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000004929 201.0
DYD3_k127_6857057_0 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 439.0
DYD3_k127_6857057_1 PA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 381.0
DYD3_k127_6857057_2 MarR family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000001069 177.0
DYD3_k127_6857057_3 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000155 115.0
DYD3_k127_690392_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004622 417.0
DYD3_k127_690392_1 gluconolactonase K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009563 336.0
DYD3_k127_690392_2 peptidase K07274 - - 0.000000000000000000001678 96.0
DYD3_k127_690392_3 Domain of unknown function (DUF4332) - - - 0.00000000000007962 77.0
DYD3_k127_690392_4 Domain of unknown function (DUF4332) - - - 0.000000001042 68.0
DYD3_k127_6913134_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 493.0
DYD3_k127_6913134_1 hydrolase, TatD family' K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.0000003456 54.0
DYD3_k127_694131_0 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074 527.0
DYD3_k127_694131_1 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000008339 124.0
DYD3_k127_6985483_0 PFAM peptidase M16 domain protein K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 311.0
DYD3_k127_6985483_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001965 263.0
DYD3_k127_6985483_2 Thiamin pyrophosphokinase, vitamin B1 binding domain K00949 - 2.7.6.2 0.000000000000001036 85.0
DYD3_k127_6985483_3 Rdx family K07401 - - 0.000002014 51.0
DYD3_k127_6985483_4 Peptidase family M1 domain - - - 0.0001224 54.0
DYD3_k127_7015602_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 479.0
DYD3_k127_7015602_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000011 285.0
DYD3_k127_7015602_2 - - - - 0.000009979 57.0
DYD3_k127_7073114_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 527.0
DYD3_k127_7073114_1 PFAM Alanine dehydrogenase PNT, C-terminal domain K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006172 398.0
DYD3_k127_7073114_2 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.00000000000000000000000000002423 124.0
DYD3_k127_7073114_3 Heavy metal translocating P-type atpase K17686 - 3.6.3.54 0.000000000005559 68.0
DYD3_k127_7073114_4 extracellular matrix structural constituent - - - 0.00009249 56.0
DYD3_k127_7078573_0 Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 362.0
DYD3_k127_7078573_1 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000568 305.0
DYD3_k127_7078573_2 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005773 273.0
DYD3_k127_7078573_3 DNA polymerase beta thumb K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000006355 244.0
DYD3_k127_7078573_4 Pyridine nucleotide-disulphide oxidoreductase K00384,K03387,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000018 233.0
DYD3_k127_7078573_5 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000000000001945 109.0
DYD3_k127_7103361_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 375.0
DYD3_k127_7103361_1 unfolded protein binding - - - 0.000000000000000002282 93.0
DYD3_k127_7114349_0 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000009791 205.0
DYD3_k127_7114349_1 long-chain fatty acid transporting porin activity - - - 0.00000000000000643 89.0
DYD3_k127_7147301_0 Short chain fatty acid transporter K02106 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 491.0
DYD3_k127_7147301_1 peptidase activity, acting on L-amino acid peptides K07004,K09955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 409.0
DYD3_k127_7147301_2 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 364.0
DYD3_k127_7147301_3 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 310.0
DYD3_k127_7147301_5 Evidence 5 No homology to any previously reported sequences - - - 0.00000000006542 75.0
DYD3_k127_7147301_6 pathogenesis - - - 0.0000116 57.0
DYD3_k127_7181189_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000005935 241.0
DYD3_k127_7181189_1 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.0000000000000000000000000000000000000002099 162.0
DYD3_k127_7181189_2 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000001679 153.0
DYD3_k127_7181189_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07710 - 2.7.13.3 0.00000000000000000000000000006533 135.0
DYD3_k127_7181189_4 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.0000000000000000000000000008781 115.0
DYD3_k127_7181189_5 phosphoglucosamine mutase activity K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.000000002466 61.0
DYD3_k127_7181189_6 PBS lyase HEAT-like repeat - - - 0.0000001373 62.0
DYD3_k127_7181189_7 - - - - 0.00002021 52.0
DYD3_k127_7185662_0 Glycosyl transferase 4-like K00754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 413.0
DYD3_k127_7185662_1 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000002107 275.0
DYD3_k127_7185662_2 Bacillithiol biosynthesis BshC K22136 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006914 260.0
DYD3_k127_7185662_3 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000004534 164.0
DYD3_k127_7188383_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 468.0
DYD3_k127_7188383_1 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000001004 235.0
DYD3_k127_7231463_0 Beta-eliminating lyase K01667 - 4.1.99.1 6.954e-196 625.0
DYD3_k127_7231463_1 Thrombospondin type 3 repeat - - - 0.00000000000000000000000000000000000000000000000000000000002996 226.0
DYD3_k127_7231463_2 Yqey-like protein K09117 - - 0.0000000000000000000000000473 117.0
DYD3_k127_793368_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1255.0
DYD3_k127_793368_1 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 4.241e-282 887.0
DYD3_k127_793368_2 Peptidase m28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 476.0
DYD3_k127_793368_3 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 438.0
DYD3_k127_793368_4 Barrel-sandwich domain of CusB or HlyD membrane-fusion K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007485 258.0
DYD3_k127_793368_5 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000003298 231.0
DYD3_k127_793368_6 BioY family K03523 - - 0.0000000000000000000000000000000000000000000000000007864 190.0
DYD3_k127_793368_7 coenzyme binding K07071 - - 0.0000000000000000000000001101 123.0
DYD3_k127_793368_8 Prokaryotic N-terminal methylation motif K02456 - - 0.00000002818 63.0
DYD3_k127_793368_9 Outer membrane efflux protein K15725 - - 0.0001065 50.0
DYD3_k127_807363_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 534.0
DYD3_k127_807363_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 291.0
DYD3_k127_807363_2 Thioesterase K01075,K07107,K12073 - 3.1.2.23,3.1.2.28 0.00000000000000006648 93.0
DYD3_k127_807363_3 PFAM AMP-dependent synthetase and ligase K00666 - - 0.000316 44.0
DYD3_k127_808266_0 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 394.0
DYD3_k127_808266_1 COG1125 ABC-type proline glycine betaine transport systems ATPase components K05847 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001557 278.0
DYD3_k127_810208_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 430.0
DYD3_k127_817843_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 603.0
DYD3_k127_817843_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001478 267.0
DYD3_k127_817843_2 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000009561 53.0
DYD3_k127_842896_0 helicase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003879 488.0
DYD3_k127_914543_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 457.0
DYD3_k127_914543_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 323.0
DYD3_k127_914543_2 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00002032 57.0
DYD3_k127_929275_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 457.0
DYD3_k127_929275_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006589 433.0
DYD3_k127_929275_10 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000003282 137.0
DYD3_k127_929275_11 metallopeptidase activity - - - 0.000000000000000000000000016 128.0
DYD3_k127_929275_12 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.00000000001075 79.0
DYD3_k127_929275_13 HAD superfamily K07015 - - 0.000000006882 68.0
DYD3_k127_929275_14 PFAM helix-turn-helix domain protein - - - 0.000003435 55.0
DYD3_k127_929275_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 431.0
DYD3_k127_929275_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 380.0
DYD3_k127_929275_4 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 366.0
DYD3_k127_929275_5 Magnesium chelatase, subunit ChlI K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 351.0
DYD3_k127_929275_6 transcriptional regulator, AraC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004652 312.0
DYD3_k127_929275_7 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003439 286.0
DYD3_k127_929275_8 TonB-dependent receptor K16092 - - 0.00000000000000000000000000000000000000000000245 186.0
DYD3_k127_929275_9 monooxygenase activity - - - 0.00000000000000000000000000000000004595 139.0
DYD3_k127_93561_0 Myo-inositol-1-phosphate synthase K01858 GO:0003674,GO:0003824,GO:0004512,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009405,GO:0009987,GO:0010125,GO:0010126,GO:0016137,GO:0016138,GO:0016853,GO:0016872,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044272,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1901657,GO:1901659 5.5.1.4 2.914e-198 624.0
DYD3_k127_93561_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 402.0
DYD3_k127_93561_10 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000455 203.0
DYD3_k127_93561_11 8-oxoguanine DNA glycosylase domain protein K03660 - 4.2.99.18 0.00000000000000000000000000000000000000001255 165.0
DYD3_k127_93561_12 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K00999 GO:0003674,GO:0003824,GO:0003881,GO:0003882,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.11,2.7.8.5 0.00000000000000000000000000000005287 142.0
DYD3_k127_93561_13 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.00000000000000000000000000005385 120.0
DYD3_k127_93561_14 PPIC-type PPIASE domain - - - 0.0000000002388 71.0
DYD3_k127_93561_15 YbbR-like protein - - - 0.0000008143 59.0
DYD3_k127_93561_2 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005812 321.0
DYD3_k127_93561_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004203 301.0
DYD3_k127_93561_4 Threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006452 281.0
DYD3_k127_93561_5 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000003568 249.0
DYD3_k127_93561_6 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000006079 259.0
DYD3_k127_93561_7 Metalloenzyme superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000001539 241.0
DYD3_k127_93561_8 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000002239 235.0
DYD3_k127_93561_9 (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000007333 232.0
DYD3_k127_984355_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 - 1.4.1.4 3.077e-252 784.0
DYD3_k127_984355_1 - - - - 0.000000000000000000000000001105 126.0
DYD3_k127_984355_2 YceI-like domain - - - 0.000000000000000000001891 107.0
DYD3_k127_984355_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000002235 63.0
DYD3_k127_999667_0 solute binding protein K02035 - - 0.000000000000000002193 100.0
DYD3_k127_999667_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000005406 57.0