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Overview

ID MAG02027
Name LYD1_bin.1
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family Gemmatimonadaceae
Genus UBA4720
Species
Assembly information
Completeness (%) 75.76
Contamination (%) 1.09
GC content (%) 61.0
N50 (bp) 13,618
Genome size (bp) 2,626,658

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2348

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1007025_0 histidine kinase, HAMP - - - 0.00000000000000000000000000000000002616 154.0
LYD1_k127_1007025_1 heat shock protein binding - - - 0.000000000000000000000000000000267 128.0
LYD1_k127_1007025_2 Transcriptional regulatory protein, C terminal - - - 0.0009359 48.0
LYD1_k127_1012049_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 321.0
LYD1_k127_1012049_1 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 310.0
LYD1_k127_1012049_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000001141 185.0
LYD1_k127_1012049_3 PFAM MCP methyltransferase CheR-type K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000004968 191.0
LYD1_k127_1012049_4 - - - - 0.0000000008166 61.0
LYD1_k127_1029657_0 Phosphoglucose isomerase K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 584.0
LYD1_k127_1029657_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 585.0
LYD1_k127_1029657_2 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009979 357.0
LYD1_k127_1029657_3 Fructose-bisphosphate aldolase class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 323.0
LYD1_k127_1029657_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000003482 215.0
LYD1_k127_1060064_0 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 529.0
LYD1_k127_1060064_1 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 431.0
LYD1_k127_1060064_2 - - - - 0.0000000000000000000000177 104.0
LYD1_k127_1065010_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1409.0
LYD1_k127_1065010_1 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000000000000000000000000000000000002405 233.0
LYD1_k127_1065010_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000000000000000575 225.0
LYD1_k127_1065010_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000001507 147.0
LYD1_k127_1116101_0 ABC transporter transmembrane region K18889 - - 3.691e-226 716.0
LYD1_k127_1116101_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009022 589.0
LYD1_k127_1116101_2 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 572.0
LYD1_k127_1116101_3 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004211 562.0
LYD1_k127_1116101_4 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 366.0
LYD1_k127_1116101_5 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 321.0
LYD1_k127_1116101_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000398 288.0
LYD1_k127_1116101_7 - - - - 0.0000000000000003445 90.0
LYD1_k127_1116101_8 Sigma-54 interaction domain - - - 0.000000000001283 73.0
LYD1_k127_1116101_9 - - - - 0.0000006807 54.0
LYD1_k127_1125743_0 TonB-dependent receptor - - - 1.34e-285 908.0
LYD1_k127_1125743_1 Oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 549.0
LYD1_k127_1125743_2 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006743 289.0
LYD1_k127_1125743_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000001976 223.0
LYD1_k127_1125743_4 Gluconate 2-dehydrogenase subunit 3 - - - 0.00000000000000000000000000000000001695 139.0
LYD1_k127_1125743_5 - - - - 0.00000000000000000000000005708 115.0
LYD1_k127_1125743_6 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000001695 81.0
LYD1_k127_1125743_7 peroxiredoxin activity - - - 0.000000002106 63.0
LYD1_k127_1125743_8 - - - - 0.000000005175 60.0
LYD1_k127_1125743_9 peroxiredoxin activity - - - 0.0000138 49.0
LYD1_k127_1131306_0 transposase IS116 IS110 IS902 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 304.0
LYD1_k127_1131306_1 - K01992 - - 0.00000000000000000000000000000000000000000005649 165.0
LYD1_k127_1131306_2 Prokaryotic N-terminal methylation motif K02456 - - 0.00000001577 66.0
LYD1_k127_117059_0 TonB dependent receptor - - - 3.316e-266 844.0
LYD1_k127_117059_1 Bacterial Na+/H+ antiporter B (NhaB) - - - 0.00000000000000000000000000000000000000000001048 172.0
LYD1_k127_1183393_0 Outer membrane protein beta-barrel family - - - 1.957e-294 926.0
LYD1_k127_1183393_1 Amidohydrolase family K06015 - 3.5.1.81 3.482e-219 692.0
LYD1_k127_1183393_10 PFAM periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000000000313 183.0
LYD1_k127_1183393_11 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000000000004948 168.0
LYD1_k127_1183393_12 - - - - 0.00000000000000000000000000000006337 128.0
LYD1_k127_1183393_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 286.0
LYD1_k127_1183393_3 O-methyltransferase K00588 - 2.1.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008517 281.0
LYD1_k127_1183393_4 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009382 261.0
LYD1_k127_1183393_5 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000006116 259.0
LYD1_k127_1183393_6 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000002752 236.0
LYD1_k127_1183393_7 heme binding - - - 0.00000000000000000000000000000000000000000000000000000000000002909 225.0
LYD1_k127_1183393_9 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000001701 192.0
LYD1_k127_1204669_0 tail specific protease K03797 - 3.4.21.102 5.197e-195 622.0
LYD1_k127_1204669_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 560.0
LYD1_k127_1204669_11 - - - - 0.0001299 53.0
LYD1_k127_1204669_2 Phospholipase D. Active site motifs. K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 520.0
LYD1_k127_1204669_3 stress-induced mitochondrial fusion - GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 486.0
LYD1_k127_1204669_4 Replication initiator protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 372.0
LYD1_k127_1204669_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000139 259.0
LYD1_k127_1204669_6 MerR HTH family regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003893 253.0
LYD1_k127_1204669_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000001458 228.0
LYD1_k127_1204669_8 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000003455 177.0
LYD1_k127_1204669_9 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000002798 145.0
LYD1_k127_1207304_0 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 554.0
LYD1_k127_1207304_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000596 518.0
LYD1_k127_1207304_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006 355.0
LYD1_k127_1207304_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001146 259.0
LYD1_k127_1207304_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002596 236.0
LYD1_k127_1207304_5 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000007132 138.0
LYD1_k127_1207304_6 tRNA methylthiotransferase YqeV K18707 - 2.8.4.5 0.00000003815 62.0
LYD1_k127_1267134_0 domain protein K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 513.0
LYD1_k127_1267134_1 Zinc carboxypeptidase K14054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 438.0
LYD1_k127_1267134_2 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009046 421.0
LYD1_k127_1267134_3 PFAM Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 363.0
LYD1_k127_1267134_4 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004145 283.0
LYD1_k127_1267134_5 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001695 272.0
LYD1_k127_1267134_6 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000239 252.0
LYD1_k127_1267134_7 PFAM ATP-binding region, ATPase domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000001503 201.0
LYD1_k127_1267134_8 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.000000000000251 77.0
LYD1_k127_1284407_0 Domain of unknown function (DUF4956) - - - 0.0000000000000000000000000000000000002271 155.0
LYD1_k127_1284407_1 SdiA-regulated - - - 0.0000000000000000000000000000000000319 147.0
LYD1_k127_1284407_2 Surface antigen - - - 0.00000000000000000000002831 106.0
LYD1_k127_1293251_0 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 586.0
LYD1_k127_1293251_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006917 489.0
LYD1_k127_1293251_2 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003965 418.0
LYD1_k127_1293251_3 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 307.0
LYD1_k127_1293251_4 Acetyltransferase (GNAT) family - - - 0.000002182 57.0
LYD1_k127_1347_0 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001118 294.0
LYD1_k127_1347_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000001065 207.0
LYD1_k127_1347_2 peptide-methionine (R)-S-oxide reductase activity K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000004041 198.0
LYD1_k127_1394586_0 GMC oxidoreductase - - - 1.625e-298 924.0
LYD1_k127_1394586_1 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 6.059e-232 727.0
LYD1_k127_1394586_10 Gluconate 2-dehydrogenase subunit 3 - - - 0.0000000000000000000000000000000000000000000000000001678 192.0
LYD1_k127_1394586_11 HAD-hyrolase-like K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000001919 177.0
LYD1_k127_1394586_12 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000001271 138.0
LYD1_k127_1394586_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006366 594.0
LYD1_k127_1394586_3 Nucleoside H+ symporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 481.0
LYD1_k127_1394586_5 Two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 350.0
LYD1_k127_1394586_6 Doubled CXXCH motif (Paired_CXXCH_1) K08354 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 305.0
LYD1_k127_1394586_7 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001576 291.0
LYD1_k127_1394586_8 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001327 238.0
LYD1_k127_1394586_9 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000003624 214.0
LYD1_k127_1398199_0 DNA-dependent DNA replication K02315,K07452,K11144 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 358.0
LYD1_k127_1398199_1 DNA mediated transformation K04096 - - 0.00000000000000000000000000001909 124.0
LYD1_k127_141245_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 2.623e-257 796.0
LYD1_k127_141245_1 Sodium:solute symporter family - - - 7.947e-216 680.0
LYD1_k127_141245_10 Iron-sulphur cluster biosynthesis - - - 0.000000000000000000000000000000000000000000000000000001519 193.0
LYD1_k127_141245_11 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000002478 145.0
LYD1_k127_141245_12 - - - - 0.00000000000000000000000000000007501 126.0
LYD1_k127_141245_13 - - - - 0.000000000000000000000000004412 116.0
LYD1_k127_141245_14 - - - - 0.0000000000000000000000004303 115.0
LYD1_k127_141245_16 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000344 96.0
LYD1_k127_141245_17 - - - - 0.0000000000000001263 86.0
LYD1_k127_141245_18 Methyltransferase type 12 - - - 0.000000000000002826 86.0
LYD1_k127_141245_2 Sodium:solute symporter family - - - 4.796e-195 627.0
LYD1_k127_141245_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 563.0
LYD1_k127_141245_4 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 557.0
LYD1_k127_141245_5 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 469.0
LYD1_k127_141245_6 e3 binding domain K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 414.0
LYD1_k127_141245_7 BadF/BadG/BcrA/BcrD ATPase family K18676 - 2.7.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 325.0
LYD1_k127_141245_8 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 325.0
LYD1_k127_141245_9 KR domain K03793 - 1.5.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 312.0
LYD1_k127_1478535_0 Belongs to the DEAD box helicase family K05592,K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030312,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360 3.6.4.13 2.315e-214 680.0
LYD1_k127_1478535_1 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000154 205.0
LYD1_k127_1478535_2 YceI-like domain - - - 0.000000000000000000000000000000000000000000000000009474 187.0
LYD1_k127_1478535_3 Histidine kinase K08082 - 2.7.13.3 0.0000000000000000000000000000000000000000001875 177.0
LYD1_k127_1478535_4 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000000000000003864 151.0
LYD1_k127_1478535_5 TonB-dependent receptor K02014 - - 0.00000000000005131 80.0
LYD1_k127_1478535_6 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000002195 64.0
LYD1_k127_1498483_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 2.412e-305 983.0
LYD1_k127_1498483_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 6.068e-219 691.0
LYD1_k127_1498483_2 Surface antigen K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 558.0
LYD1_k127_1498483_3 Pyridine nucleotide-disulphide oxidoreductase K21567 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 527.0
LYD1_k127_1498483_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 496.0
LYD1_k127_1498483_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 301.0
LYD1_k127_1498483_6 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 297.0
LYD1_k127_1498483_7 NlpC/P60 family - - - 0.000000000000000000000000000000000000000000000000000000007723 207.0
LYD1_k127_1498483_8 - - - - 0.0000000000000000000000000000000000002204 145.0
LYD1_k127_1501902_0 ABC transporter K06158 - - 5.082e-257 807.0
LYD1_k127_1501902_1 Arginosuccinate synthase K01940 - 6.3.4.5 1.572e-214 672.0
LYD1_k127_1501902_10 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 444.0
LYD1_k127_1501902_11 Aldo Keto reductase K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 390.0
LYD1_k127_1501902_12 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 383.0
LYD1_k127_1501902_13 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 376.0
LYD1_k127_1501902_14 alpha/beta hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 373.0
LYD1_k127_1501902_15 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009593 343.0
LYD1_k127_1501902_16 protein tyrosine kinase activity K16692 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 320.0
LYD1_k127_1501902_17 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 287.0
LYD1_k127_1501902_18 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001011 286.0
LYD1_k127_1501902_19 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08968 - 1.8.4.14 0.00000000000000000000000000000000000000000000000000000000000000000000000009167 252.0
LYD1_k127_1501902_2 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 2.215e-209 661.0
LYD1_k127_1501902_20 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000006128 256.0
LYD1_k127_1501902_21 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000005985 238.0
LYD1_k127_1501902_22 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000002433 233.0
LYD1_k127_1501902_23 Copper binding proteins, plastocyanin/azurin family K02638 - - 0.0000000000000000000000000000000000000000000000000000000000001381 218.0
LYD1_k127_1501902_24 cyclic nucleotide binding K07001,K10914 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008080,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0030551,GO:0030552,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000006043 210.0
LYD1_k127_1501902_25 Regulates arginine biosynthesis genes K03402 - - 0.0000000000000000000000000000000000000000000000000000297 193.0
LYD1_k127_1501902_26 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.000000000000000000000000000000000000000000000000003272 191.0
LYD1_k127_1501902_27 - - - - 0.00000000000000000000000000000000000000000000004966 172.0
LYD1_k127_1501902_28 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000000000000000000000001453 169.0
LYD1_k127_1501902_29 ArsC family - - - 0.000000000000000000000000000000000000003109 149.0
LYD1_k127_1501902_3 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 603.0
LYD1_k127_1501902_30 Cold shock protein domain K03704 - - 0.00000000000000000000000000000000001503 136.0
LYD1_k127_1501902_31 - - - - 0.0000000000000000000000000000000002922 139.0
LYD1_k127_1501902_32 Cold shock K03704 - - 0.000000000000000000000000000005473 121.0
LYD1_k127_1501902_34 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000009405 108.0
LYD1_k127_1501902_35 Membrane protein implicated in regulation of membrane protease activity - - - 0.00000000000000000007842 97.0
LYD1_k127_1501902_36 - - - - 0.0002743 47.0
LYD1_k127_1501902_4 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 602.0
LYD1_k127_1501902_5 DNA ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006165 591.0
LYD1_k127_1501902_6 Glycosyl hydrolase family 3 C-terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336 539.0
LYD1_k127_1501902_7 Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009376 493.0
LYD1_k127_1501902_8 Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 488.0
LYD1_k127_1501902_9 Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 457.0
LYD1_k127_1526290_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 516.0
LYD1_k127_1526290_1 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000574 398.0
LYD1_k127_1526290_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 340.0
LYD1_k127_1526290_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009519 318.0
LYD1_k127_1526290_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002303 254.0
LYD1_k127_1526290_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000447 222.0
LYD1_k127_1528273_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 3.204e-243 762.0
LYD1_k127_1528273_1 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 6.407e-211 662.0
LYD1_k127_1528273_2 protein histidine kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 411.0
LYD1_k127_1528273_3 MazG nucleotide pyrophosphohydrolase domain K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 340.0
LYD1_k127_1534222_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 2.828e-228 733.0
LYD1_k127_1534222_1 E1-E2 ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000606 554.0
LYD1_k127_1534222_10 COGs COG2823 periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000003897 222.0
LYD1_k127_1534222_11 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000007468 164.0
LYD1_k127_1534222_12 YceI-like domain - - - 0.000000000000000000000000000000000211 139.0
LYD1_k127_1534222_13 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000029 138.0
LYD1_k127_1534222_14 RDD family - - - 0.00000000000000000000000007453 123.0
LYD1_k127_1534222_15 Yip1 domain - - - 0.00000000000000000000000395 112.0
LYD1_k127_1534222_16 Histidine kinase - - - 0.0000000000000000003064 100.0
LYD1_k127_1534222_17 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000000006145 95.0
LYD1_k127_1534222_18 universal stress protein - - - 0.00000000005532 74.0
LYD1_k127_1534222_19 Universal stress protein family - - - 0.00005313 55.0
LYD1_k127_1534222_2 Multicopper oxidase K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004333 489.0
LYD1_k127_1534222_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004745 483.0
LYD1_k127_1534222_4 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 389.0
LYD1_k127_1534222_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009856 377.0
LYD1_k127_1534222_6 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 347.0
LYD1_k127_1534222_7 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 308.0
LYD1_k127_1534222_8 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 311.0
LYD1_k127_1534222_9 TIGRFAM efflux transporter, RND family, MFP subunit K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006715 286.0
LYD1_k127_1548437_0 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009439 560.0
LYD1_k127_1548437_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 530.0
LYD1_k127_1548437_10 - - - - 0.00000001996 60.0
LYD1_k127_1548437_11 - - - - 0.00005581 52.0
LYD1_k127_1548437_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 470.0
LYD1_k127_1548437_3 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003813 456.0
LYD1_k127_1548437_4 Serine threonine protein kinase involved in cell cycle control - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002944 262.0
LYD1_k127_1548437_5 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000001639 191.0
LYD1_k127_1548437_6 Cys/Met metabolism PLP-dependent enzyme K01739,K01740,K01761 - 2.5.1.48,2.5.1.49,4.4.1.11 0.000000000000000000000000000000001073 135.0
LYD1_k127_1548437_7 Protein of unknown function (DUF3037) - - - 0.00000000000000000000000000000004207 130.0
LYD1_k127_1548437_8 methyltransferase activity - - - 0.000000000000000000000000000005557 126.0
LYD1_k127_1548437_9 - - - - 0.00000000006573 68.0
LYD1_k127_1563388_0 Domain of unknown function (DUF5118) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 365.0
LYD1_k127_1563388_1 nucleotide catabolic process K01081,K11751,K17224 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 361.0
LYD1_k127_1563388_2 Diacylglycerol kinase catalytic domain (presumed) K07029 - 2.7.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000001272 273.0
LYD1_k127_1609332_0 Thiolase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 407.0
LYD1_k127_1609332_1 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000002928 220.0
LYD1_k127_1609332_2 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K00087 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000006858 211.0
LYD1_k127_1609332_3 Bacterial regulatory proteins, tetR family K09017 - - 0.0000000000000000000000000000000000007733 151.0
LYD1_k127_1649582_0 Sortilin, neurotensin receptor 3, - - - 5.603e-208 657.0
LYD1_k127_1649582_1 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 556.0
LYD1_k127_1649582_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005753 491.0
LYD1_k127_1649582_3 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 364.0
LYD1_k127_1649582_4 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 356.0
LYD1_k127_1649582_5 - - - - 0.00000000000000000000000000000000003615 143.0
LYD1_k127_1649582_6 Cysteine-rich CPXCG - - - 0.0000000000000000000573 92.0
LYD1_k127_1716156_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - 5.333e-213 676.0
LYD1_k127_1716156_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 487.0
LYD1_k127_1716156_2 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 433.0
LYD1_k127_1716156_3 Selenoprotein, putative - - - 0.0000000000000184 76.0
LYD1_k127_1725462_0 Tetrahydrodipicolinate N-succinyltransferase N-terminal K00674 - 2.3.1.117 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005665 411.0
LYD1_k127_1725462_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 401.0
LYD1_k127_1725462_2 Semialdehyde dehydrogenase, NAD binding domain K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 364.0
LYD1_k127_1725462_3 Amino acid kinase family K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003005 361.0
LYD1_k127_1725462_4 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000006226 242.0
LYD1_k127_1725462_5 Amino acid kinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000003332 228.0
LYD1_k127_1725462_6 3-phosphoshikimate 1-carboxyvinyltransferase activity K00800 GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:0071944,GO:1901576 2.5.1.19 0.000000000000000000002303 96.0
LYD1_k127_1799853_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000002963 261.0
LYD1_k127_1804027_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 521.0
LYD1_k127_1804027_1 Methionine synthase B12-binding module cap domain protein K00548,K15023 - 2.1.1.13,2.1.1.258 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 387.0
LYD1_k127_1804027_2 photoreceptor activity K02484 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 338.0
LYD1_k127_1804027_3 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000000000001149 156.0
LYD1_k127_1814738_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2380.0
LYD1_k127_1814738_1 lysine biosynthetic process via aminoadipic acid - - - 2.378e-281 892.0
LYD1_k127_1814738_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 3.528e-194 615.0
LYD1_k127_1814738_3 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001832 291.0
LYD1_k127_1814738_4 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000009841 267.0
LYD1_k127_1814738_5 S23 ribosomal protein - - - 0.000000000000000005394 89.0
LYD1_k127_1824869_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1231.0
LYD1_k127_1824869_1 WD40-like Beta Propeller Repeat - - - 1.127e-209 668.0
LYD1_k127_1824869_10 - - - - 0.00000001489 64.0
LYD1_k127_1824869_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 372.0
LYD1_k127_1824869_3 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007848 362.0
LYD1_k127_1824869_4 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 354.0
LYD1_k127_1824869_5 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000004421 224.0
LYD1_k127_1824869_6 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000675 201.0
LYD1_k127_1824869_7 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000014 116.0
LYD1_k127_1824869_8 - - - - 0.0000000000000000000003049 105.0
LYD1_k127_1824869_9 Amidohydrolase family - - - 0.0000000000000000004393 93.0
LYD1_k127_1861547_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.268e-305 960.0
LYD1_k127_1861547_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 5.854e-231 719.0
LYD1_k127_1861547_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 501.0
LYD1_k127_1861547_3 O-acyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 406.0
LYD1_k127_1861547_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001324 278.0
LYD1_k127_1861547_5 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003623 247.0
LYD1_k127_1861547_6 - - - - 0.00000000000000000000000000000000000000000000000002103 188.0
LYD1_k127_1861547_7 NUDIX domain K08310 - 3.6.1.67 0.00000000000000000000492 93.0
LYD1_k127_1977844_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0 1222.0
LYD1_k127_1977844_1 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 1.842e-289 904.0
LYD1_k127_1977844_10 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 423.0
LYD1_k127_1977844_11 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 407.0
LYD1_k127_1977844_12 cellular manganese ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 383.0
LYD1_k127_1977844_13 Outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 362.0
LYD1_k127_1977844_14 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 323.0
LYD1_k127_1977844_15 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 341.0
LYD1_k127_1977844_16 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 321.0
LYD1_k127_1977844_17 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006369 295.0
LYD1_k127_1977844_18 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 254.0
LYD1_k127_1977844_19 M61 glycyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000002038 246.0
LYD1_k127_1977844_2 Transport of potassium into the cell K03549 - - 2.697e-247 778.0
LYD1_k127_1977844_20 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000004435 227.0
LYD1_k127_1977844_21 S4 RNA-binding domain K04762 - - 0.0000000000000000000000000000000003913 136.0
LYD1_k127_1977844_22 - - - - 0.00000000000000000000000000000001768 133.0
LYD1_k127_1977844_23 sirohydrochlorin cobaltochelatase activity K03794 GO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016829,GO:0018130,GO:0019354,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046156,GO:0046483,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051266,GO:0051536,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.4 0.00000000000000000000000000000005165 131.0
LYD1_k127_1977844_24 chemotaxis protein K03406 - - 0.0000000000000000000006676 110.0
LYD1_k127_1977844_25 PDZ domain (Also known as DHR or GLGF) - - - 0.0000000000000000000012 109.0
LYD1_k127_1977844_26 - - - - 0.00000001153 63.0
LYD1_k127_1977844_27 Belongs to the UPF0337 (CsbD) family - - - 0.000007653 50.0
LYD1_k127_1977844_3 DNA polymerase alpha chain like domain K02347 - - 1.284e-210 668.0
LYD1_k127_1977844_4 Vitamin B12 dependent methionine synthase activation region K00548 - 2.1.1.13 1.002e-194 623.0
LYD1_k127_1977844_5 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 584.0
LYD1_k127_1977844_6 M42 glutamyl aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 521.0
LYD1_k127_1977844_7 Vitamin B12 dependent methionine synthase activation region K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 511.0
LYD1_k127_1977844_8 asparaginase K01424,K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.1,3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 454.0
LYD1_k127_1977844_9 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 432.0
LYD1_k127_201632_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 9.378e-214 672.0
LYD1_k127_201632_1 DALR_2 K01883 - 6.1.1.16 5.801e-211 666.0
LYD1_k127_201632_10 Ribosomal protein L33 K02913 - - 0.000000000000000000000001025 103.0
LYD1_k127_201632_11 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000006408 94.0
LYD1_k127_201632_13 ATPases associated with a variety of cellular activities K02056,K10545 - 3.6.3.17 0.000000000002474 77.0
LYD1_k127_201632_2 permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 434.0
LYD1_k127_201632_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005031 417.0
LYD1_k127_201632_4 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 376.0
LYD1_k127_201632_5 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 309.0
LYD1_k127_201632_6 PspA/IM30 family K03969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001549 256.0
LYD1_k127_201632_7 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001041 251.0
LYD1_k127_201632_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000000011 235.0
LYD1_k127_201632_9 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000001699 177.0
LYD1_k127_2051564_0 Bacterial regulatory protein, Fis family - - - 3.107e-205 651.0
LYD1_k127_2051564_1 Aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003244 300.0
LYD1_k127_2051564_2 - - - - 0.000000000000000000000000000000000000000000000000007613 191.0
LYD1_k127_2077919_0 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 528.0
LYD1_k127_2077919_1 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 506.0
LYD1_k127_2077919_10 Acetyltransferase (GNAT) domain K02348 - - 0.00000000000000000000000000000000000000000000000006758 182.0
LYD1_k127_2077919_11 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000001905 193.0
LYD1_k127_2077919_12 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000001622 173.0
LYD1_k127_2077919_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000002196 130.0
LYD1_k127_2077919_2 Fatty acid desaturase K03921 - 1.14.19.11,1.14.19.2,1.14.19.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 495.0
LYD1_k127_2077919_3 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 488.0
LYD1_k127_2077919_4 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 467.0
LYD1_k127_2077919_5 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 401.0
LYD1_k127_2077919_6 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 327.0
LYD1_k127_2077919_7 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 312.0
LYD1_k127_2077919_8 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 291.0
LYD1_k127_2077919_9 metal ion transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000002389 214.0
LYD1_k127_2123761_0 AMP-binding enzyme C-terminal domain K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 557.0
LYD1_k127_2123761_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 518.0
LYD1_k127_2123761_10 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000001134 158.0
LYD1_k127_2123761_11 N-terminal half of MaoC dehydratase K17865 - 4.2.1.55 0.0000000000000000000000000000000000000009568 151.0
LYD1_k127_2123761_2 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008601 443.0
LYD1_k127_2123761_3 maleylacetate reductase K00217 - 1.3.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 336.0
LYD1_k127_2123761_4 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 314.0
LYD1_k127_2123761_5 Domain of unknown function (DUF1906) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 302.0
LYD1_k127_2123761_6 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004658 281.0
LYD1_k127_2123761_7 TIGRFAM esterase, PHB depolymerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003218 282.0
LYD1_k127_2123761_8 Sodium:solute symporter family K14392 - - 0.0000000000000000000000000000000000000000000000000000000000001031 216.0
LYD1_k127_2123761_9 - - - - 0.00000000000000000000000000000000000000000000000000005965 192.0
LYD1_k127_2127012_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 443.0
LYD1_k127_2127012_1 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 408.0
LYD1_k127_2127012_10 - - - - 0.00000000000000000004431 94.0
LYD1_k127_2127012_11 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000006895 81.0
LYD1_k127_2127012_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000739 402.0
LYD1_k127_2127012_3 Glucose inhibited division protein A K21401 - 1.3.99.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 381.0
LYD1_k127_2127012_4 Major intrinsic protein K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 297.0
LYD1_k127_2127012_5 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 297.0
LYD1_k127_2127012_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007317 254.0
LYD1_k127_2127012_7 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000028 229.0
LYD1_k127_2127012_8 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000000000001125 198.0
LYD1_k127_2127012_9 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000002729 158.0
LYD1_k127_2145615_0 von Willebrand factor type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 625.0
LYD1_k127_2145615_1 von Willebrand factor (vWF) type A domain - - - 0.0002041 54.0
LYD1_k127_2176920_0 Sortilin, neurotensin receptor 3, - - - 0.0 1399.0
LYD1_k127_2176920_1 beta-galactosidase activity K15855 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005576,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044238,GO:0071704,GO:1901575 3.2.1.165 0.0 1367.0
LYD1_k127_2176920_10 glyoxalase bleomycin resistance protein dioxygenase K04750 - - 0.00000000000000000000000000000000000000000000000000000005113 199.0
LYD1_k127_2176920_11 methylamine metabolic process K15977 - - 0.000000000000000000000000000000000000000000000000000004747 195.0
LYD1_k127_2176920_12 - - - - 0.000000000000000000000000000000000000000000000000001925 190.0
LYD1_k127_2176920_13 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000037 192.0
LYD1_k127_2176920_14 Sortilin, neurotensin receptor 3, - - - 0.000000000000000000000000000000000000000000000000004526 190.0
LYD1_k127_2176920_15 - - - - 0.0000000000000000000000000000000000000002726 154.0
LYD1_k127_2176920_16 PFAM DsrE DsrF-like family K09004 - - 0.000000000000000000000000000000000001333 145.0
LYD1_k127_2176920_17 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000001744 140.0
LYD1_k127_2176920_18 Glycosyl hydrolase-like 10 - - - 0.00000000000000000000000000000003871 141.0
LYD1_k127_2176920_19 - - - - 0.000000000000000000000000000001943 130.0
LYD1_k127_2176920_2 Amino acid permease K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 6.165e-255 790.0
LYD1_k127_2176920_20 - - - - 0.00000000000000000000001696 104.0
LYD1_k127_2176920_21 - - - - 0.000000000000006592 84.0
LYD1_k127_2176920_22 gag-polyprotein putative aspartyl protease - - - 0.000149 53.0
LYD1_k127_2176920_3 chaperone-mediated protein folding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 615.0
LYD1_k127_2176920_4 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000444 600.0
LYD1_k127_2176920_5 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 445.0
LYD1_k127_2176920_6 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 402.0
LYD1_k127_2176920_7 DJ-1/PfpI family K05520 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006517,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009268,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009438,GO:0009628,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0030091,GO:0032787,GO:0033554,GO:0034641,GO:0036211,GO:0036524,GO:0036525,GO:0042180,GO:0042182,GO:0042802,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046394,GO:0046483,GO:0050896,GO:0051596,GO:0051716,GO:0061727,GO:0071704,GO:0072330,GO:0090304,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000000000000395 263.0
LYD1_k127_2176920_8 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000006681 263.0
LYD1_k127_2176920_9 Protein of unknown function (DUF1697) - - - 0.00000000000000000000000000000000000000000000000000000000004467 217.0
LYD1_k127_2186645_0 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 320.0
LYD1_k127_219087_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 377.0
LYD1_k127_2194391_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 397.0
LYD1_k127_2194391_1 -O-antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 377.0
LYD1_k127_2194391_2 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 319.0
LYD1_k127_2194391_3 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009087 270.0
LYD1_k127_2194391_4 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.0000000000000000000000000000000000000000000000000000000008576 210.0
LYD1_k127_2194391_5 - - - - 0.00000000000000000000000000000000000000000000000000000000475 214.0
LYD1_k127_2194391_6 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000005727 94.0
LYD1_k127_2194391_8 transferase activity, transferring glycosyl groups - - - 0.0000001791 62.0
LYD1_k127_2216480_0 metallocarboxypeptidase activity K14054 - - 0.0 1016.0
LYD1_k127_2216480_1 Rhodanese Homology Domain K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 509.0
LYD1_k127_2216480_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 315.0
LYD1_k127_2216480_3 - - - - 0.0000000000000000000000000000283 127.0
LYD1_k127_2216480_4 lytic transglycosylase activity - - - 0.00000000000000001523 89.0
LYD1_k127_2273081_0 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005284 555.0
LYD1_k127_2273081_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 538.0
LYD1_k127_2273081_2 GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 417.0
LYD1_k127_2273081_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 327.0
LYD1_k127_2273081_4 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003815 270.0
LYD1_k127_2273081_5 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000004659 230.0
LYD1_k127_2273081_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000003369 219.0
LYD1_k127_2273081_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000002621 186.0
LYD1_k127_2273081_8 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000653 181.0
LYD1_k127_2273081_9 4-vinyl reductase, 4VR - - - 0.000000000000000001545 94.0
LYD1_k127_2296280_0 Belongs to the bacterial solute-binding protein 9 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002915 348.0
LYD1_k127_2296280_1 Domain of unknown function (DUF4159) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 322.0
LYD1_k127_2296280_2 - - - - 0.00000000000000000000000000000000000000000000000000009684 202.0
LYD1_k127_2296280_3 - - - - 0.0000000000000000000000000000000000000000008555 169.0
LYD1_k127_2296280_4 PFAM ABC transporter transmembrane K06147 - - 0.00000000000003096 73.0
LYD1_k127_230739_0 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.000000000000000000000000000005981 128.0
LYD1_k127_2311387_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 493.0
LYD1_k127_2311387_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 355.0
LYD1_k127_2311387_2 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.000000000002916 71.0
LYD1_k127_2342027_0 von Willebrand factor type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 511.0
LYD1_k127_2342027_1 von Willebrand factor type A domain - - - 0.0000008843 53.0
LYD1_k127_2348509_0 Dehydrogenase K07077 - - 1.538e-278 863.0
LYD1_k127_2348509_1 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 565.0
LYD1_k127_2348509_11 Protein of unknown function (DUF1572) - - - 0.000000000000000000000000000000000002225 144.0
LYD1_k127_2348509_12 Predicted membrane protein (DUF2127) - - - 0.000000000000000000000000000005724 125.0
LYD1_k127_2348509_13 - - - - 0.0000000000000000000000002523 114.0
LYD1_k127_2348509_14 DUF167 K09131 - - 0.0000000000000000000001827 99.0
LYD1_k127_2348509_15 - - - - 0.0001677 48.0
LYD1_k127_2348509_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004631 550.0
LYD1_k127_2348509_3 succinyl-diaminopimelate desuccinylase activity K01295 - 3.4.17.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 536.0
LYD1_k127_2348509_4 Glycosyl hydrolase family 20, domain 2 K12373 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 504.0
LYD1_k127_2348509_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 512.0
LYD1_k127_2348509_6 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000425 415.0
LYD1_k127_2348509_7 chitin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003132 274.0
LYD1_k127_2348509_8 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000002804 218.0
LYD1_k127_2348509_9 - - - - 0.00000000000000000000000000000000000000000000002362 177.0
LYD1_k127_2373164_0 Polysulphide reductase, NrfD K00185 - - 1.031e-247 773.0
LYD1_k127_2373164_1 4Fe-4S dicluster domain K00184 - - 3.868e-228 716.0
LYD1_k127_2373164_10 - - - - 0.00000007524 65.0
LYD1_k127_2373164_11 protein transport across the cell outer membrane K02457,K02458,K08084 - - 0.0002741 50.0
LYD1_k127_2373164_2 Pfam Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004968 509.0
LYD1_k127_2373164_3 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 380.0
LYD1_k127_2373164_4 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002117 245.0
LYD1_k127_2373164_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000001301 237.0
LYD1_k127_2373164_6 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000001875 240.0
LYD1_k127_2373164_7 Thioredoxin-like domain K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000007082 207.0
LYD1_k127_2373164_8 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000009498 120.0
LYD1_k127_2373164_9 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000001372 122.0
LYD1_k127_243114_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1075.0
LYD1_k127_243114_1 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.00000000000000000000000000000000000000000000000000000000000000001791 247.0
LYD1_k127_243114_2 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000001034 183.0
LYD1_k127_243114_3 - - - - 0.000000000000000000000000000000000000000000000002204 176.0
LYD1_k127_243114_4 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00000000000000000000001048 100.0
LYD1_k127_243114_5 Belongs to the precorrin methyltransferase family K02303,K13542 - 2.1.1.107,4.2.1.75 0.0000000000000001988 83.0
LYD1_k127_243114_6 Vitamin K epoxide reductase family - - - 0.000000000000002926 81.0
LYD1_k127_2459616_0 - - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008757,GO:0016278,GO:0016740,GO:0016741,GO:0032259 - 0.0 1828.0
LYD1_k127_2459616_1 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006515 466.0
LYD1_k127_2459616_2 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009823 436.0
LYD1_k127_2459616_3 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 332.0
LYD1_k127_2459616_4 PFAM Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000007124 218.0
LYD1_k127_2459616_5 MlaD protein K02067 - - 0.00000000000000000000000000000000004886 142.0
LYD1_k127_2459616_6 Helix-hairpin-helix motif K02237 - - 0.000000000000004092 81.0
LYD1_k127_2459616_7 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.00000000007775 68.0
LYD1_k127_246287_0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 507.0
LYD1_k127_246287_1 Sodium:solute symporter family K14392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 503.0
LYD1_k127_246287_2 helix_turn _helix lactose operon repressor K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 396.0
LYD1_k127_246287_3 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 313.0
LYD1_k127_246287_4 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005084 242.0
LYD1_k127_246287_5 - - - - 0.0000000000000000000000000000000000006186 145.0
LYD1_k127_2483098_0 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000000002039 173.0
LYD1_k127_2483098_1 Polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000009638 170.0
LYD1_k127_2483098_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000001258 96.0
LYD1_k127_2483098_3 Lipopolysaccharide core biosynthesis glycosyltransferase LpsD - - - 0.000000784 53.0
LYD1_k127_2484450_0 isocitrate dehydrogenase activity K00031 GO:0003674,GO:0003824,GO:0003862,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022900,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 473.0
LYD1_k127_2519088_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K01663,K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 329.0
LYD1_k127_2519088_1 Inositol monophosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 306.0
LYD1_k127_2519088_2 Histidine biosynthesis bifunctional protein HisIE K01496,K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000005467 267.0
LYD1_k127_2519088_3 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000001796 255.0
LYD1_k127_2519088_4 Mannose-6-phosphate isomerase - - - 0.000000000000000000000000000000000000000000799 163.0
LYD1_k127_2519088_5 Histidine biosynthesis protein K01814 - 5.3.1.16 0.00003186 46.0
LYD1_k127_2522969_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.311e-204 642.0
LYD1_k127_2522969_1 SIS domain K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 399.0
LYD1_k127_2522969_2 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008012 390.0
LYD1_k127_2522969_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 348.0
LYD1_k127_2522969_4 Lipopolysaccharide-assembly, LptC-related - - - 0.000000000000000000000000000000000000000000006938 169.0
LYD1_k127_2522969_5 ABC transporter K06861 - - 0.000000000000000000000000000000419 131.0
LYD1_k127_2533980_0 Elongation factor G, domain IV K02355 - - 0.0 1024.0
LYD1_k127_2533980_1 bleomycin resistance protein K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000638 155.0
LYD1_k127_2533980_2 polysaccharide export K01991 - - 0.0000000000000000000000000000000009151 138.0
LYD1_k127_2533980_3 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000001133 110.0
LYD1_k127_2653558_0 2-Nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 609.0
LYD1_k127_2653558_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007215 557.0
LYD1_k127_2653558_2 Hypothetical methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005735 309.0
LYD1_k127_2653558_3 Domain of unknown function (DUF4142) K08995 - - 0.0000000000000000000000000000000000000000000000000000000754 202.0
LYD1_k127_2653558_4 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000001047 198.0
LYD1_k127_2653558_5 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000002419 181.0
LYD1_k127_2653558_6 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000000000000000000000000000003628 133.0
LYD1_k127_2654652_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009845 426.0
LYD1_k127_2654652_1 polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 335.0
LYD1_k127_2654652_2 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000002198 156.0
LYD1_k127_2654652_3 GDP-mannose 4,6 dehydratase K01784 - 5.1.3.2 0.0000000000000000000000006623 106.0
LYD1_k127_2694757_0 Methylmalonyl-CoA mutase K01848,K11942 - 5.4.99.13,5.4.99.2 1.517e-295 914.0
LYD1_k127_2694757_1 Carboxyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 431.0
LYD1_k127_2694757_2 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 399.0
LYD1_k127_2694757_3 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 337.0
LYD1_k127_2694757_4 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000447 237.0
LYD1_k127_2706639_0 TonB dependent receptor K02014,K16087 - - 0.0000000000000000000000000000000000000000000000000000000000000004916 240.0
LYD1_k127_2706639_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000002542 190.0
LYD1_k127_2706639_2 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000001187 150.0
LYD1_k127_2709560_0 4Fe-4S single cluster domain K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 421.0
LYD1_k127_274402_0 Elongation factor G C-terminus K06207 - - 1.055e-309 958.0
LYD1_k127_274402_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 6.521e-228 745.0
LYD1_k127_274402_2 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 398.0
LYD1_k127_274402_3 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 378.0
LYD1_k127_274402_4 PPIC-type PPIASE domain K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 370.0
LYD1_k127_274402_5 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009517 348.0
LYD1_k127_274402_6 cation diffusion facilitator family transporter K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001006 273.0
LYD1_k127_274402_7 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000298 158.0
LYD1_k127_274402_8 Domain of unknown function (DUF4384) - - - 0.00000811 58.0
LYD1_k127_2763052_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000005537 158.0
LYD1_k127_2763052_1 Glycosyl transferase family 2 K07011 - - 0.00000000000000626 81.0
LYD1_k127_2763052_2 heptosyltransferase K02843 - - 0.00000000000001206 86.0
LYD1_k127_276496_0 Aldehyde dehydrogenase family K00128,K00130 - 1.2.1.3,1.2.1.8 1.021e-238 752.0
LYD1_k127_276496_1 peptidase - - - 1.757e-210 668.0
LYD1_k127_276496_10 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 363.0
LYD1_k127_276496_11 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009628 299.0
LYD1_k127_276496_13 Belongs to the BI1 family K06890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 285.0
LYD1_k127_276496_14 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000386 252.0
LYD1_k127_276496_15 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000226 217.0
LYD1_k127_276496_16 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000343 205.0
LYD1_k127_276496_17 ATPases associated with a variety of cellular activities K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000001076 183.0
LYD1_k127_276496_18 ABC-type transport system involved in cytochrome c biogenesis permease component K02194 - - 0.00000000000000000000000000000000000001253 154.0
LYD1_k127_276496_19 Glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000294 147.0
LYD1_k127_276496_2 TonB-linked outer membrane protein, SusC RagA family - - - 2.301e-207 680.0
LYD1_k127_276496_20 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000001059 136.0
LYD1_k127_276496_21 SusD family K21572 - - 0.000000000000000000000000000000006639 144.0
LYD1_k127_276496_22 - - - - 0.00000000000000000000000000000004263 134.0
LYD1_k127_276496_23 Thiol disulfide interchange protein K02199 - - 0.00000000000000000000000000000004701 132.0
LYD1_k127_276496_24 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000001473 119.0
LYD1_k127_276496_25 - - - - 0.000000000000000000000000001112 122.0
LYD1_k127_276496_27 Glycosyl transferase, family 2 - - - 0.00000000000000000000001414 112.0
LYD1_k127_276496_28 subunit of a heme lyase K02200 - - 0.0000000000000000000001124 105.0
LYD1_k127_276496_3 Cytochrome c-type biogenesis protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 599.0
LYD1_k127_276496_30 - - - - 0.000000000004622 69.0
LYD1_k127_276496_31 Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I K02638 - - 0.0000000002624 66.0
LYD1_k127_276496_32 - - - - 0.00001578 52.0
LYD1_k127_276496_4 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006781 552.0
LYD1_k127_276496_5 amino acid K20265 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006873,GO:0006885,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0019725,GO:0022804,GO:0022857,GO:0030003,GO:0030004,GO:0030641,GO:0031224,GO:0031226,GO:0034220,GO:0042592,GO:0044425,GO:0044459,GO:0044464,GO:0045852,GO:0046942,GO:0046943,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051453,GO:0051454,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:0098771,GO:1902475,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 481.0
LYD1_k127_276496_6 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 456.0
LYD1_k127_276496_7 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 453.0
LYD1_k127_276496_8 DeoC/LacD family aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 424.0
LYD1_k127_276496_9 belongs to the aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 364.0
LYD1_k127_2765501_0 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 325.0
LYD1_k127_2765501_1 PTS system sorbose-specific iic component K02795 - - 0.000000000000000000000000000000000000000000000000000000000006933 216.0
LYD1_k127_2765501_2 PTS system sorbose subfamily IIB component K19507 - - 0.00000000000000000000000000000000000000000000000000000000002259 211.0
LYD1_k127_2765501_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000000000000000004231 143.0
LYD1_k127_2765501_4 PTS system fructose IIA component K02744 - - 0.000000000000000000000000000000003709 133.0
LYD1_k127_2765501_5 PTS HPr component phosphorylation site K11189 - - 0.0000000000000000000000002702 118.0
LYD1_k127_27759_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 511.0
LYD1_k127_27759_1 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 396.0
LYD1_k127_27759_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 357.0
LYD1_k127_27759_3 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 305.0
LYD1_k127_27759_4 Diacylglycerol kinase catalytic domain (presumed) K07029 - 2.7.1.107 0.000000000000000000000000000000000000000000000001719 187.0
LYD1_k127_27759_5 - - - - 0.00000000000000000000000000000000000000009552 156.0
LYD1_k127_27759_6 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000000000000000000000002067 162.0
LYD1_k127_27759_7 CBS domain protein - - - 0.0000000002721 69.0
LYD1_k127_278431_0 GlcNAc-PI de-N-acetylase - - - 1.667e-226 726.0
LYD1_k127_278431_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 558.0
LYD1_k127_278431_2 Binding-protein-dependent transport system inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 480.0
LYD1_k127_278431_3 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 465.0
LYD1_k127_278431_4 Iron ABC transporter substrate-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 379.0
LYD1_k127_278431_5 ABC transporter K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005568 372.0
LYD1_k127_278431_6 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000001325 231.0
LYD1_k127_278431_7 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000002022 156.0
LYD1_k127_2839795_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1326.0
LYD1_k127_2839795_1 Atp-dependent helicase - - - 0.0 1210.0
LYD1_k127_2839795_10 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 404.0
LYD1_k127_2839795_11 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 371.0
LYD1_k127_2839795_12 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799 364.0
LYD1_k127_2839795_13 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 331.0
LYD1_k127_2839795_14 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004821 268.0
LYD1_k127_2839795_15 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000958 265.0
LYD1_k127_2839795_16 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000006255 198.0
LYD1_k127_2839795_17 LD-carboxypeptidase K01297 - 3.4.17.13 0.000000000000000000000000000000000000000000000000001678 196.0
LYD1_k127_2839795_18 Yip1 domain - - - 0.000000000000000000000000000000000000000000000002012 179.0
LYD1_k127_2839795_19 D-glycero-D-manno-heptose 7-phosphate metabolic process K03271,K03272,K03525,K12961 GO:0003674,GO:0005488,GO:0005515,GO:0006275,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010556,GO:0010557,GO:0010604,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032298,GO:0042802,GO:0045740,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:2000105,GO:2000112 2.7.1.167,2.7.1.33,2.7.7.70,5.3.1.28 0.000000000000000000000000000000000000000000000003706 178.0
LYD1_k127_2839795_2 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0 1139.0
LYD1_k127_2839795_20 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000000000000000000004843 162.0
LYD1_k127_2839795_21 - - - - 0.00000000000000000000000000000003839 141.0
LYD1_k127_2839795_22 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000002316 117.0
LYD1_k127_2839795_24 - - - - 0.0000000000000000001971 93.0
LYD1_k127_2839795_25 Tfp pilus assembly protein FimT - - - 0.0000000000000000004688 92.0
LYD1_k127_2839795_26 Domain of unknown function (DUF4412) - - - 0.000000000000000004738 97.0
LYD1_k127_2839795_27 Alpha/beta hydrolase family - - - 0.0000000000000002045 91.0
LYD1_k127_2839795_28 - - - - 0.000000000000002391 78.0
LYD1_k127_2839795_29 - - - - 0.000000001966 67.0
LYD1_k127_2839795_3 Transglycosylase K21464 - 2.4.1.129,3.4.16.4 6.094e-269 843.0
LYD1_k127_2839795_31 von Willebrand factor type A domain - - - 0.00002678 49.0
LYD1_k127_2839795_33 - - - - 0.00003012 50.0
LYD1_k127_2839795_4 NAD synthase K01916 - 6.3.1.5 8.525e-251 801.0
LYD1_k127_2839795_5 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 593.0
LYD1_k127_2839795_6 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006257 571.0
LYD1_k127_2839795_7 LytB protein K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005214 571.0
LYD1_k127_2839795_8 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 555.0
LYD1_k127_2839795_9 lysine 2,3-aminomutase activity K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 412.0
LYD1_k127_2864619_0 FAD linked oxidases, C-terminal domain K00803 - 2.5.1.26 2.16e-205 659.0
LYD1_k127_2864619_1 dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes K13356 - 1.2.1.84 7.055e-200 653.0
LYD1_k127_2864619_10 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000000000000000000000007031 191.0
LYD1_k127_2864619_11 Peptidase S46 - - - 0.000000000000000000000000000000109 126.0
LYD1_k127_2864619_12 - - - - 0.00000000000000000000000003147 113.0
LYD1_k127_2864619_13 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000978 118.0
LYD1_k127_2864619_14 Cupin 2, conserved barrel domain protein K07155 - 1.13.11.24 0.00000000000000000000000231 109.0
LYD1_k127_2864619_15 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000002252 95.0
LYD1_k127_2864619_16 - - - - 0.0000000000000000004493 88.0
LYD1_k127_2864619_17 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000007446 65.0
LYD1_k127_2864619_18 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.000002974 56.0
LYD1_k127_2864619_19 MarR family - - - 0.0008326 44.0
LYD1_k127_2864619_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 428.0
LYD1_k127_2864619_3 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008699 418.0
LYD1_k127_2864619_4 PFAM multicopper oxidase type K08100 - 1.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 342.0
LYD1_k127_2864619_5 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 316.0
LYD1_k127_2864619_6 Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine functions in substrate recognition. Required for DNA damage lesion repair in stationary-phase cells K03649 - 3.2.2.28 0.000000000000000000000000000000000000000000000000000000000000000002486 230.0
LYD1_k127_2864619_7 Cytochrome c K00376,K02305,K17760 - 1.1.9.1,1.7.2.4 0.00000000000000000000000000000000000000000000000000000000000003151 222.0
LYD1_k127_2864619_8 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000000001396 221.0
LYD1_k127_2864619_9 - - - - 0.00000000000000000000000000000000000000000000000000000001056 209.0
LYD1_k127_2875012_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1567.0
LYD1_k127_2875012_1 xanthine dehydrogenase activity - - - 0.0 1129.0
LYD1_k127_2875012_10 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 430.0
LYD1_k127_2875012_11 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008482 406.0
LYD1_k127_2875012_12 xanthine dehydrogenase activity K13479 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 374.0
LYD1_k127_2875012_13 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 341.0
LYD1_k127_2875012_14 LysM domain K13735 GO:0005575,GO:0005623,GO:0007155,GO:0008150,GO:0009279,GO:0009405,GO:0009987,GO:0016020,GO:0019867,GO:0022610,GO:0030260,GO:0030312,GO:0030313,GO:0031589,GO:0031975,GO:0042710,GO:0043708,GO:0044403,GO:0044409,GO:0044419,GO:0044462,GO:0044464,GO:0044764,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0071944,GO:0090605 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004097 315.0
LYD1_k127_2875012_15 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004287 256.0
LYD1_k127_2875012_16 tRNA wobble adenosine to inosine editing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002965 250.0
LYD1_k127_2875012_17 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000003908 231.0
LYD1_k127_2875012_18 COG3911 Predicted ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000008653 239.0
LYD1_k127_2875012_19 2 iron, 2 sulfur cluster binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000008514 235.0
LYD1_k127_2875012_2 cytochrome c oxidase subunit I K02274 - 1.9.3.1 4.206e-261 822.0
LYD1_k127_2875012_20 Rubrerythrin K22336 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000003713 199.0
LYD1_k127_2875012_21 allantoin biosynthetic process K01477,K16840 - 3.5.3.4,4.1.1.97 0.0000000000000000000000000000000000000000000000000001261 191.0
LYD1_k127_2875012_22 MobA-Related Protein K00087,K07141,K07402,K19190 - 1.1.1.328,1.17.1.4,2.7.7.76 0.000000000000000000000000000000000000000000000000004778 187.0
LYD1_k127_2875012_23 DNA-binding transcription factor activity - - - 0.000000000000000000000000000000000000000000002274 168.0
LYD1_k127_2875012_24 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000000000000000000000006262 164.0
LYD1_k127_2875012_25 methylamine metabolic process K15977 - - 0.00000000000000000000000000000000000000000009892 164.0
LYD1_k127_2875012_26 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000002034 156.0
LYD1_k127_2875012_27 Transcriptional regulator - - - 0.00000000000000000000000000000003431 133.0
LYD1_k127_2875012_28 hydroxyisourate hydrolase activity K07127,K13485 GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009112,GO:0009987,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:1901360,GO:1901564 3.5.2.17,4.1.1.97 0.0000000000000000000000000000001432 127.0
LYD1_k127_2875012_29 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.000000000000000000000000000004995 130.0
LYD1_k127_2875012_3 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01466 GO:0003674,GO:0003824,GO:0004038,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0019439,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 591.0
LYD1_k127_2875012_30 - - - - 0.00000000000000000000000000006244 125.0
LYD1_k127_2875012_31 Domain present in PSD-95, Dlg, and ZO-1/2. K04771 - 3.4.21.107 0.00000000000000000000004839 110.0
LYD1_k127_2875012_32 PFAM OsmC family protein - - - 0.0000000000000000000005414 102.0
LYD1_k127_2875012_33 Cupin 2, conserved barrel domain protein - - - 0.00000000000002056 76.0
LYD1_k127_2875012_34 Domain of Unknown function (DUF542) K07322 - - 0.0000001147 57.0
LYD1_k127_2875012_4 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 576.0
LYD1_k127_2875012_5 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 537.0
LYD1_k127_2875012_6 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 515.0
LYD1_k127_2875012_7 Belongs to the allantoicase family K01477 GO:0003674,GO:0003824,GO:0004037,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019439,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 494.0
LYD1_k127_2875012_8 Belongs to the HpcH HpaI aldolase family K18292 - 4.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 497.0
LYD1_k127_2875012_9 XdhC and CoxI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008922 450.0
LYD1_k127_2883387_0 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 525.0
LYD1_k127_2883387_1 Phenylacetic acid catabolic protein K02611 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002154 339.0
LYD1_k127_2883387_2 Enoyl-CoA hydratase/isomerase K13766 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006903 277.0
LYD1_k127_2883387_3 Pfam:DUF59 K02612 - - 0.000000000000000000000000000000000000000000000000000002672 196.0
LYD1_k127_2885456_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 2.291e-292 911.0
LYD1_k127_2885456_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 1.015e-209 662.0
LYD1_k127_2885456_2 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 425.0
LYD1_k127_2885456_3 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 379.0
LYD1_k127_2885456_4 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 369.0
LYD1_k127_2885456_5 Serine aminopeptidase, S33 K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 305.0
LYD1_k127_2885456_6 Protein of unknown function (DUF721) - - - 0.00000000000000000000000000356 113.0
LYD1_k127_2885456_7 - - - - 0.000000000000000002757 89.0
LYD1_k127_2892250_0 Polysaccharide biosynthesis/export protein - - - 7.785e-249 788.0
LYD1_k127_2892250_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 554.0
LYD1_k127_2892250_10 Capsule assembly protein Wzi - - - 0.000000000000000000001155 109.0
LYD1_k127_2892250_2 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 451.0
LYD1_k127_2892250_3 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 442.0
LYD1_k127_2892250_4 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007933 371.0
LYD1_k127_2892250_5 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336 373.0
LYD1_k127_2892250_6 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 334.0
LYD1_k127_2892250_7 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000000000008754 211.0
LYD1_k127_2892250_8 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000000000004064 198.0
LYD1_k127_2892250_9 Predicted periplasmic lipoprotein (DUF2279) - - - 0.0000000000000000000000002328 119.0
LYD1_k127_292431_0 TonB-dependent Receptor Plug Domain K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 457.0
LYD1_k127_2984727_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 562.0
LYD1_k127_2984727_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 385.0
LYD1_k127_2984727_2 Nodulation protein S (NodS) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 293.0
LYD1_k127_2984727_3 - - - - 0.00000000000000000000000000000000000000000000000000000000002507 208.0
LYD1_k127_2984727_4 Modulates the polysaccharide chain length of enterobacterial common antigen (ECA) - - - 0.000000000000000000000000000000000002161 154.0
LYD1_k127_2984727_5 Methyltransferase FkbM domain - - - 0.000000000000000000000000000004554 125.0
LYD1_k127_2984727_6 TIGRFAM methyltransferase FkbM family - - - 0.0000000002654 71.0
LYD1_k127_3077776_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 602.0
LYD1_k127_3077776_1 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009805 365.0
LYD1_k127_3077776_2 Fructose-bisphosphate aldolase class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 319.0
LYD1_k127_3077776_3 YtxH-like protein - - - 0.0000000000000003578 83.0
LYD1_k127_3100129_0 lysine biosynthetic process via aminoadipic acid - - - 7.711e-302 951.0
LYD1_k127_3100129_1 TrkA-C domain K03455 - - 3.545e-221 707.0
LYD1_k127_3100129_11 PFAM Forkhead-associated protein - - - 0.000179 52.0
LYD1_k127_3100129_2 Putative peptidoglycan binding domain K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 627.0
LYD1_k127_3100129_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 578.0
LYD1_k127_3100129_4 PFAM Protein kinase K03413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 479.0
LYD1_k127_3100129_5 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 458.0
LYD1_k127_3100129_6 protein catabolic process K03420,K13525,K17681 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 408.0
LYD1_k127_3100129_7 Response regulator receiver K11443 - - 0.00000000000000000000000000000000000000000000000008905 184.0
LYD1_k127_3143863_0 Bacterial extracellular solute-binding protein K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 402.0
LYD1_k127_3143863_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 344.0
LYD1_k127_3143863_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 319.0
LYD1_k127_3143863_3 Phosphate transport system permease protein PstA K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 308.0
LYD1_k127_3143863_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 295.0
LYD1_k127_3143863_5 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 287.0
LYD1_k127_3143863_6 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000000000000000003768 248.0
LYD1_k127_3143863_7 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.0000000000000000000000000000009128 126.0
LYD1_k127_3143863_8 - - - - 0.0000000000007913 80.0
LYD1_k127_3146178_0 ABC transporter transmembrane region - - - 9.838e-239 766.0
LYD1_k127_3146178_1 CarboxypepD_reg-like domain - - - 3.098e-230 752.0
LYD1_k127_3146178_2 Amino acid permease K03294 - - 4.137e-198 627.0
LYD1_k127_3146178_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008847 419.0
LYD1_k127_3146178_4 Cytochrome oxidase assembly protein K02259 - - 0.00000000000000000000000000000000000000000000000000000000000000000000618 245.0
LYD1_k127_3146178_5 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000005443 169.0
LYD1_k127_3146178_6 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000006676 77.0
LYD1_k127_315247_0 SurA N-terminal domain K03770 - 5.2.1.8 1.668e-205 655.0
LYD1_k127_315247_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000003625 182.0
LYD1_k127_315247_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000000000000003638 92.0
LYD1_k127_3178306_0 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 520.0
LYD1_k127_3178306_1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 425.0
LYD1_k127_3178306_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 320.0
LYD1_k127_3178306_3 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000000007862 126.0
LYD1_k127_3178306_4 23S rRNA-intervening sequence protein - - - 0.000000000000001141 82.0
LYD1_k127_3202295_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 558.0
LYD1_k127_3202295_1 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008872 374.0
LYD1_k127_3202295_10 positive regulation of type IV pilus biogenesis K07343 - - 0.0000000000000000000000000005418 118.0
LYD1_k127_3202295_11 - - - - 0.0000000002917 69.0
LYD1_k127_3202295_2 membrane-anchored protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 333.0
LYD1_k127_3202295_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.00000000000000000000000000000000000000000000000000000000000000000006087 242.0
LYD1_k127_3202295_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000004014 228.0
LYD1_k127_3202295_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000004346 229.0
LYD1_k127_3202295_6 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000005533 188.0
LYD1_k127_3202295_7 Membrane protein involved in cytochrome C biogenesis - - - 0.00000000000000000000000000000000000000000000001277 176.0
LYD1_k127_3202295_8 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000003083 154.0
LYD1_k127_3202295_9 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 GO:0008150,GO:0040007 1.2.1.70 0.00000000000000000000000000001856 133.0
LYD1_k127_3228039_0 Amidohydrolase family - - - 1.843e-230 726.0
LYD1_k127_3228039_1 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009817 242.0
LYD1_k127_3228039_2 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000000001173 204.0
LYD1_k127_3228039_3 PFAM Glycosyl hydrolases family 18 - - - 0.00000298 59.0
LYD1_k127_3239086_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.036e-312 970.0
LYD1_k127_3239086_1 amine dehydrogenase activity - - - 4.106e-249 796.0
LYD1_k127_3239086_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008573 567.0
LYD1_k127_3239086_3 AMIN domain K02666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 314.0
LYD1_k127_3239086_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000001151 151.0
LYD1_k127_3239086_5 Protein of unknown function (DUF494) K03747 - - 0.00000000000000000008195 91.0
LYD1_k127_3291603_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 9.041e-220 690.0
LYD1_k127_3291603_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 502.0
LYD1_k127_3291603_10 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000001122 146.0
LYD1_k127_3291603_11 Zinc finger domain - - - 0.00000000000000000000000000000832 130.0
LYD1_k127_3291603_12 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000614 96.0
LYD1_k127_3291603_2 von Willebrand factor type A domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 484.0
LYD1_k127_3291603_3 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 427.0
LYD1_k127_3291603_4 Protein of unknown function (DUF1194) K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 411.0
LYD1_k127_3291603_5 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 359.0
LYD1_k127_3291603_6 S4 RNA-binding domain K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 317.0
LYD1_k127_3291603_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 320.0
LYD1_k127_3291603_8 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006546 278.0
LYD1_k127_3291603_9 - - - - 0.000000000000000000000000000000000000000000004585 176.0
LYD1_k127_3292033_0 4 iron, 4 sulfur cluster binding K03737 - 1.2.7.1 0.0 1984.0
LYD1_k127_3292033_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 1.187e-224 713.0
LYD1_k127_3292033_2 Part of a membrane complex involved in electron transport K03615 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004523 440.0
LYD1_k127_3292033_3 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008271 338.0
LYD1_k127_3292033_4 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 332.0
LYD1_k127_3292033_5 electron transport complex, RnfABCDGE type, B subunit K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 310.0
LYD1_k127_3292033_6 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003106 269.0
LYD1_k127_3292033_7 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000001568 214.0
LYD1_k127_3292033_8 Part of a membrane complex involved in electron transport K02560,K03613,K10773 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0044464,GO:0055114,GO:0071944 2.3.1.243,4.2.99.18 0.0000000000000000000000000000000000000000000000011 181.0
LYD1_k127_3292033_9 Part of a membrane complex involved in electron transport - - - 0.000000000000000000004908 106.0
LYD1_k127_3310502_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001455 295.0
LYD1_k127_3310502_1 Peptidase dimerisation domain K13049 - - 0.0000000000000000000000000000000000000000000000000000000028 206.0
LYD1_k127_3310502_2 DinB family - - - 0.0000000000000000000000000000000000000000000000003683 181.0
LYD1_k127_3310502_3 Recombinase zinc beta ribbon domain - - - 0.0002096 46.0
LYD1_k127_3355273_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393 381.0
LYD1_k127_3355273_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000003402 257.0
LYD1_k127_3355273_2 - - - - 0.00000000000000000000000000000000000003299 152.0
LYD1_k127_336227_0 Heat shock protein DnaJ domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001633 239.0
LYD1_k127_336227_1 cytochrome C peroxidase - - - 0.0000000000000001268 79.0
LYD1_k127_336227_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000002092 72.0
LYD1_k127_3365903_0 Belongs to the peptidase S1B family - - - 0.000000000000000000000000001891 123.0
LYD1_k127_3374621_0 RecQ zinc-binding K03654 - 3.6.4.12 1.72e-268 844.0
LYD1_k127_3374621_1 Acyl-CoA dehydrogenase, C-terminal domain K18244 - - 2.81e-199 627.0
LYD1_k127_3374621_2 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843,K02849,K12982 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 407.0
LYD1_k127_3374621_3 Polysaccharide biosynthesis protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 317.0
LYD1_k127_3374621_4 Ribonuclease E/G family K08301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001423 249.0
LYD1_k127_3374621_5 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000003048 217.0
LYD1_k127_3374621_6 Glycosyl transferase - - - 0.00000000000000000000000000004832 131.0
LYD1_k127_3374621_7 MgtC family K07507 - - 0.000000000000000000000000004761 115.0
LYD1_k127_3388248_0 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 602.0
LYD1_k127_3388248_1 Peptidase M15 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 369.0
LYD1_k127_3388248_2 SpoU rRNA Methylase family K02533,K15396 - 2.1.1.200 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009942 290.0
LYD1_k127_3388248_3 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004062 243.0
LYD1_k127_3424807_0 AcrB/AcrD/AcrF family K15726 - - 0.0 1461.0
LYD1_k127_3424807_1 Phosphate acetyl/butaryl transferase K00027,K00029,K00625,K13788 GO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114 1.1.1.38,1.1.1.40,2.3.1.8 0.0 1187.0
LYD1_k127_3424807_10 Outer membrane efflux protein K15725 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007153 411.0
LYD1_k127_3424807_11 Barrel-sandwich domain of CusB or HlyD membrane-fusion K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 397.0
LYD1_k127_3424807_12 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 391.0
LYD1_k127_3424807_13 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 357.0
LYD1_k127_3424807_14 Part of the ABC transporter FtsEX involved in K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 311.0
LYD1_k127_3424807_15 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 287.0
LYD1_k127_3424807_16 proteins of the AP superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004935 265.0
LYD1_k127_3424807_17 - - - - 0.00000000000000000000000000000000000000001746 166.0
LYD1_k127_3424807_18 - - - - 0.00000000000000000106 92.0
LYD1_k127_3424807_19 - - - - 0.00002192 55.0
LYD1_k127_3424807_2 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.957e-295 910.0
LYD1_k127_3424807_3 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 8.611e-267 830.0
LYD1_k127_3424807_4 acetoacetyl-CoA K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 570.0
LYD1_k127_3424807_5 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002928 560.0
LYD1_k127_3424807_6 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000403 519.0
LYD1_k127_3424807_7 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006191 490.0
LYD1_k127_3424807_8 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 418.0
LYD1_k127_3424807_9 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 418.0
LYD1_k127_3426326_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 323.0
LYD1_k127_3426326_1 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 312.0
LYD1_k127_3430075_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1349.0
LYD1_k127_3430075_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 5.173e-302 935.0
LYD1_k127_3430075_10 Cytochrome c oxidase subunit III K02276,K02299 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 353.0
LYD1_k127_3430075_11 Conserved TM helix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 343.0
LYD1_k127_3430075_12 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002423 270.0
LYD1_k127_3430075_13 CoA binding domain K06929 - - 0.000000000000000000000000000000000000000000000000000000007526 204.0
LYD1_k127_3430075_14 - - - - 0.0000000000000000000000000000000005874 137.0
LYD1_k127_3430075_15 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.0000000000000000000000000000009574 124.0
LYD1_k127_3430075_16 - - - - 0.00000000000000000000000000427 113.0
LYD1_k127_3430075_2 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000867 570.0
LYD1_k127_3430075_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 527.0
LYD1_k127_3430075_4 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 526.0
LYD1_k127_3430075_5 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 484.0
LYD1_k127_3430075_6 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007315 454.0
LYD1_k127_3430075_7 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701 394.0
LYD1_k127_3430075_8 diguanylate cyclase K02488 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 378.0
LYD1_k127_3430075_9 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 362.0
LYD1_k127_3454532_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 1.653e-291 914.0
LYD1_k127_3454532_1 Participates in both transcription termination and antitermination K02600 - - 3.576e-215 677.0
LYD1_k127_3454532_10 Sugar nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 332.0
LYD1_k127_3454532_11 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003225 256.0
LYD1_k127_3454532_12 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000004995 178.0
LYD1_k127_3454532_13 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000004216 164.0
LYD1_k127_3454532_14 Roadblock/LC7 domain K07131 - - 0.00000000000000000000000002893 112.0
LYD1_k127_3454532_15 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.00000000000000000000000117 109.0
LYD1_k127_3454532_16 - - - - 0.00000000000000000001536 103.0
LYD1_k127_3454532_17 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000002224 93.0
LYD1_k127_3454532_18 - - - - 0.000000000002521 75.0
LYD1_k127_3454532_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 7.577e-195 621.0
LYD1_k127_3454532_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007915 610.0
LYD1_k127_3454532_4 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000845 594.0
LYD1_k127_3454532_5 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 531.0
LYD1_k127_3454532_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007617 492.0
LYD1_k127_3454532_7 Nucleotidyl transferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 429.0
LYD1_k127_3454532_8 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 409.0
LYD1_k127_3454532_9 Zinc dependent phospholipase C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007875 384.0
LYD1_k127_3497027_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 4.359e-229 726.0
LYD1_k127_3497027_1 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 589.0
LYD1_k127_3497027_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007902 566.0
LYD1_k127_3497027_3 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007927 422.0
LYD1_k127_3497027_4 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000004075 274.0
LYD1_k127_3497027_5 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000000000008912 246.0
LYD1_k127_3497027_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000568 216.0
LYD1_k127_3497027_7 BON domain - - - 0.00008467 50.0
LYD1_k127_3516942_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 290.0
LYD1_k127_3516942_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000006218 200.0
LYD1_k127_3516942_2 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.00000000000000000000000000000000000000000003731 173.0
LYD1_k127_3516942_3 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.000000000000000000000000000001195 136.0
LYD1_k127_3517040_0 Carboxypeptidase regulatory-like domain - - - 0.0 1488.0
LYD1_k127_3517040_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.6e-322 995.0
LYD1_k127_3517040_10 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006166 289.0
LYD1_k127_3517040_11 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004445 283.0
LYD1_k127_3517040_12 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005672 276.0
LYD1_k127_3517040_13 membrane protein, hemolysin III homolog K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007167 257.0
LYD1_k127_3517040_14 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800,K00945 - 2.5.1.19,2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000001863 250.0
LYD1_k127_3517040_15 - - - - 0.000000000000000000000000000000000000000003847 162.0
LYD1_k127_3517040_16 - - - - 0.000000000000000000000000000000001044 139.0
LYD1_k127_3517040_18 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.000000000000000000000000002352 117.0
LYD1_k127_3517040_19 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000008417 96.0
LYD1_k127_3517040_2 Sugar (and other) transporter K03446 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 561.0
LYD1_k127_3517040_20 transcriptional regulators - - - 0.0000000000000000866 87.0
LYD1_k127_3517040_3 Bacterial membrane protein YfhO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 434.0
LYD1_k127_3517040_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 404.0
LYD1_k127_3517040_5 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 391.0
LYD1_k127_3517040_6 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008573 386.0
LYD1_k127_3517040_7 Biotin-lipoyl like K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009013 368.0
LYD1_k127_3517040_8 3-phosphoshikimate 1-carboxyvinyltransferase activity K00800 GO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:0071944,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 335.0
LYD1_k127_3517040_9 Putative neutral zinc metallopeptidase K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 331.0
LYD1_k127_3526185_0 Polyprenyl synthetase K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004543 383.0
LYD1_k127_3526185_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005609 306.0
LYD1_k127_3526185_2 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000002702 166.0
LYD1_k127_3526185_3 Domain of unknown function (DUF4321) - - - 0.00000000000000000000000002297 112.0
LYD1_k127_3528469_0 Surface antigen K07277 - - 1.105e-281 891.0
LYD1_k127_3528469_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 573.0
LYD1_k127_3528469_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006781 406.0
LYD1_k127_3528469_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 382.0
LYD1_k127_3528469_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 347.0
LYD1_k127_3528469_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008295 316.0
LYD1_k127_3528469_6 Clp amino terminal domain, pathogenicity island component K03696 - - 0.0000000000000000000000000000000000000000000000000008042 185.0
LYD1_k127_3528469_7 Outer membrane protein (OmpH-like) K06142 - - 0.000000000000000000000000000001656 131.0
LYD1_k127_3558715_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 524.0
LYD1_k127_3558715_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 523.0
LYD1_k127_3558715_2 Tetratricopeptide repeat - - - 0.0000000000000000001469 96.0
LYD1_k127_3559554_0 amine dehydrogenase activity - - - 5.04e-218 711.0
LYD1_k127_3559554_1 Serine phosphatase RsbU, regulator of sigma subunit - - - 0.0000000000000000000000000000000000000003042 160.0
LYD1_k127_3559554_2 membrane - - - 0.0000004184 62.0
LYD1_k127_3570952_0 TonB dependent receptor K02014 - - 2.444e-194 636.0
LYD1_k127_3570952_1 Domain of unknown function (DUF4974) K07165 - - 0.00000000000000000000000000000000000000000000000000000000000000000006671 241.0
LYD1_k127_3570952_2 WD40-like Beta Propeller Repeat - - - 0.0000000000009803 67.0
LYD1_k127_3578120_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007256 425.0
LYD1_k127_3578120_1 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000000001983 159.0
LYD1_k127_3578120_2 Ribonuclease E/G family K08301 - - 0.00000000000000000000000000000000000000001137 154.0
LYD1_k127_3578120_3 Ribosomal L27 protein K02899 - - 0.000000000000000000000000000000000000002475 149.0
LYD1_k127_3578120_4 - - - - 0.0000000000000000000000004531 110.0
LYD1_k127_3599840_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 571.0
LYD1_k127_3599840_1 Aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 541.0
LYD1_k127_3599840_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 476.0
LYD1_k127_3599840_3 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 327.0
LYD1_k127_3599840_4 Protein of unknown function (DUF520) K09767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003362 252.0
LYD1_k127_361408_0 Integral membrane protein TerC family K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 384.0
LYD1_k127_361408_1 - - - - 0.0000000000000000000000000000000000000000000000000000002069 204.0
LYD1_k127_3657460_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 GO:0000287,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0008976,GO:0009267,GO:0009405,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015968,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019538,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036211,GO:0036293,GO:0040007,GO:0042594,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044419,GO:0044464,GO:0046777,GO:0046872,GO:0050896,GO:0051704,GO:0051716,GO:0070482,GO:0071496,GO:0071704,GO:0071944,GO:1901564 2.7.4.1 1.689e-203 665.0
LYD1_k127_3657460_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 361.0
LYD1_k127_3657460_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 333.0
LYD1_k127_3657460_3 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 313.0
LYD1_k127_3715619_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.037e-261 814.0
LYD1_k127_3715619_1 C-terminus of AA_permease K03294 - - 3.548e-211 668.0
LYD1_k127_3715619_10 - - - - 0.00000000000000000000000003674 116.0
LYD1_k127_3715619_11 Mazg nucleotide pyrophosphohydrolase - - - 0.0000000000000000000000001765 109.0
LYD1_k127_3715619_12 methyltransferase - - - 0.000006121 57.0
LYD1_k127_3715619_2 permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 1.093e-195 622.0
LYD1_k127_3715619_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006071 475.0
LYD1_k127_3715619_4 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 445.0
LYD1_k127_3715619_5 Peptidase M15 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006259 316.0
LYD1_k127_3715619_6 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 309.0
LYD1_k127_3715619_7 protein histidine kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000005993 240.0
LYD1_k127_3715619_8 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000000000000000000002696 158.0
LYD1_k127_3715619_9 - - - - 0.00000000000000000000000000837 114.0
LYD1_k127_3737049_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.109e-218 695.0
LYD1_k127_3737049_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004666 587.0
LYD1_k127_3737049_10 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000001473 124.0
LYD1_k127_3737049_2 PFAM Uncharacterised protein family UPF0182 K09118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 562.0
LYD1_k127_3737049_3 PFAM Ribonuclease II K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 495.0
LYD1_k127_3737049_4 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 325.0
LYD1_k127_3737049_5 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 312.0
LYD1_k127_3737049_6 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004299 280.0
LYD1_k127_3737049_7 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000000000000000000000000000000000002371 241.0
LYD1_k127_3737049_8 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000001808 185.0
LYD1_k127_3737049_9 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000002876 161.0
LYD1_k127_3748916_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 5.67e-320 989.0
LYD1_k127_3748916_1 Type II secretion system (T2SS), protein F K12511 - - 0.000000000000000000000000000000000000000000000000000000001802 211.0
LYD1_k127_3748916_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000002408 115.0
LYD1_k127_3757979_0 Protein export membrane protein - - - 0.0 1551.0
LYD1_k127_3757979_1 lysine biosynthetic process via aminoadipic acid - - - 0.0 1127.0
LYD1_k127_3757979_10 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 486.0
LYD1_k127_3757979_11 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 482.0
LYD1_k127_3757979_12 Proton-conducting membrane transporter K12137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 470.0
LYD1_k127_3757979_13 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 462.0
LYD1_k127_3757979_14 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 413.0
LYD1_k127_3757979_15 Proton-conducting membrane transporter K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003627 390.0
LYD1_k127_3757979_16 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 359.0
LYD1_k127_3757979_17 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 347.0
LYD1_k127_3757979_18 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004791 317.0
LYD1_k127_3757979_19 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001761 284.0
LYD1_k127_3757979_2 copper-translocating P-type ATPase K01533 - 3.6.3.4 4.823e-274 861.0
LYD1_k127_3757979_20 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002924 280.0
LYD1_k127_3757979_21 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000006912 229.0
LYD1_k127_3757979_22 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000000000000000001778 214.0
LYD1_k127_3757979_23 PFAM 2Fe-2S -binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.0000000000000000000000000000000000000000000000000000000006467 205.0
LYD1_k127_3757979_24 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000001718 190.0
LYD1_k127_3757979_25 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000191 179.0
LYD1_k127_3757979_26 Cytochrome c - - - 0.0000000000000000000000000000000000000000000152 174.0
LYD1_k127_3757979_27 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000151 149.0
LYD1_k127_3757979_28 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000001786 141.0
LYD1_k127_3757979_29 Conserved hypothetical protein - - - 0.00000000000000000000000000000000004227 148.0
LYD1_k127_3757979_3 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 1.133e-251 797.0
LYD1_k127_3757979_30 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000002231 124.0
LYD1_k127_3757979_31 - - - - 0.000000000000000000000000002864 115.0
LYD1_k127_3757979_32 Protein of unknown function (DUF2892) - - - 0.000000000000000000001022 97.0
LYD1_k127_3757979_33 Domain of unknown function (DUF4386) - - - 0.00000000000000000001344 101.0
LYD1_k127_3757979_34 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000001663 93.0
LYD1_k127_3757979_35 SnoaL-like polyketide cyclase - - - 0.0000000000000003054 84.0
LYD1_k127_3757979_36 - - - - 0.00000000000003057 80.0
LYD1_k127_3757979_37 COG1505 Serine proteases of the peptidase family S9A K01322 - 3.4.21.26 0.00000002468 57.0
LYD1_k127_3757979_38 FeoA K04758 - - 0.0000002677 63.0
LYD1_k127_3757979_39 Putative MetA-pathway of phenol degradation - - - 0.000005826 57.0
LYD1_k127_3757979_4 E1-E2 ATPase - - - 6.428e-230 730.0
LYD1_k127_3757979_40 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.000007923 59.0
LYD1_k127_3757979_41 Iron permease FTR1 family K07243 - - 0.00002906 54.0
LYD1_k127_3757979_5 PQQ-like domain K00114 - 1.1.2.8 1.747e-211 675.0
LYD1_k127_3757979_6 Prolyl oligopeptidase, N-terminal beta-propeller domain K01354 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0070012,GO:0071704,GO:0140096,GO:1901564 3.4.21.83 2.136e-209 672.0
LYD1_k127_3757979_7 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 548.0
LYD1_k127_3757979_8 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005371 516.0
LYD1_k127_3757979_9 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 488.0
LYD1_k127_3776144_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.358e-293 909.0
LYD1_k127_3776144_1 ABC transporter transmembrane region K18890 - - 6.257e-233 737.0
LYD1_k127_3776144_2 Transglycosylase associated protein - - - 0.0000000000000000000000001307 109.0
LYD1_k127_3776144_3 Transglycosylase associated protein - - - 0.000000000000000000001663 96.0
LYD1_k127_3785119_0 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 359.0
LYD1_k127_3785119_1 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 288.0
LYD1_k127_3785119_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000003493 265.0
LYD1_k127_3785119_3 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000001716 138.0
LYD1_k127_3785119_4 FtsX-like permease family K02004 - - 0.000000000000000000000000000000004346 130.0
LYD1_k127_3785119_5 P pilus assembly Cpx signaling pathway, periplasmic inhibitor zinc-resistance associated protein - - - 0.00002982 53.0
LYD1_k127_3787730_0 Carboxypeptidase regulatory-like domain - - - 2.837e-195 651.0
LYD1_k127_3787730_1 SMART Metal-dependent phosphohydrolase, HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008616 343.0
LYD1_k127_3787730_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000003958 220.0
LYD1_k127_3787730_3 - - - - 0.0000001116 64.0
LYD1_k127_3825955_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 3.326e-231 730.0
LYD1_k127_3825955_1 Phosphoadenosine phosphosulfate reductase family K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 492.0
LYD1_k127_3825955_2 adenylylsulfate kinase activity K00860,K00955 GO:0003674,GO:0003824,GO:0004020,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 321.0
LYD1_k127_3825955_3 ABC-type multidrug transport system ATPase and permease K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002184 304.0
LYD1_k127_3825955_4 Inositol monophosphatase family K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 291.0
LYD1_k127_3825955_5 Psort location Cytoplasmic, score - - - 0.0000000000000000000002563 98.0
LYD1_k127_3836099_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 484.0
LYD1_k127_3836099_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000004577 234.0
LYD1_k127_3839876_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1216.0
LYD1_k127_3839876_1 Involved in the tonB-independent uptake of proteins - - - 0.0 1210.0
LYD1_k127_3839876_10 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000000000000000000000000000002947 223.0
LYD1_k127_3839876_11 - - - - 0.00000000000000000000000000000000000000000000000000000000000006223 226.0
LYD1_k127_3839876_12 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000000000003951 166.0
LYD1_k127_3839876_13 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000008262 167.0
LYD1_k127_3839876_14 Carboxypeptidase regulatory-like domain K02014 - - 0.0000000000000000000000000000000000000001697 166.0
LYD1_k127_3839876_15 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000000000000002268 155.0
LYD1_k127_3839876_16 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000023 115.0
LYD1_k127_3839876_17 PFAM NADP oxidoreductase coenzyme F420-dependent - - - 0.0000000000000000000000001255 119.0
LYD1_k127_3839876_18 CHRD domain - - - 0.00000000000001588 81.0
LYD1_k127_3839876_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 594.0
LYD1_k127_3839876_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 489.0
LYD1_k127_3839876_4 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 483.0
LYD1_k127_3839876_5 Sporulation related domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 383.0
LYD1_k127_3839876_6 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009453 342.0
LYD1_k127_3839876_7 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000001831 260.0
LYD1_k127_3839876_8 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001122 249.0
LYD1_k127_3839876_9 Sporulation related domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001556 245.0
LYD1_k127_3844972_0 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 329.0
LYD1_k127_3844972_1 FAD linked oxidases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 290.0
LYD1_k127_3863182_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 421.0
LYD1_k127_3863182_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 394.0
LYD1_k127_3863182_2 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000008555 262.0
LYD1_k127_3863182_3 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000004238 245.0
LYD1_k127_3863182_4 Capsule assembly protein Wzi - - - 0.00000000000000000000000000000000000000000000000000000000000000000003027 250.0
LYD1_k127_3863182_5 methyltransferase - - - 0.000000000000000000000000000002161 124.0
LYD1_k127_3881294_0 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005149 277.0
LYD1_k127_3881294_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000003202 249.0
LYD1_k127_3881294_2 lytic transglycosylase activity - - - 0.000000000000000000001012 105.0
LYD1_k127_3881294_3 Lysin motif - - - 0.0000002177 61.0
LYD1_k127_3881498_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 3.556e-204 644.0
LYD1_k127_3881498_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000001981 197.0
LYD1_k127_3881498_2 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000001033 183.0
LYD1_k127_3915551_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 4.011e-228 713.0
LYD1_k127_3915551_1 metalloendopeptidase activity K08602 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 542.0
LYD1_k127_3915551_10 - - - - 0.0000000000003333 74.0
LYD1_k127_3915551_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 461.0
LYD1_k127_3915551_3 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004681 411.0
LYD1_k127_3915551_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008809 414.0
LYD1_k127_3915551_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003759 396.0
LYD1_k127_3915551_6 Protein kinase domain K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008991 389.0
LYD1_k127_3915551_7 Peptidase family M20/M25/M40 K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 351.0
LYD1_k127_3915551_9 - - - - 0.00000000000000000000001465 104.0
LYD1_k127_3927882_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 3.384e-224 700.0
LYD1_k127_3927882_1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 3.988e-214 679.0
LYD1_k127_3927882_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 595.0
LYD1_k127_3927882_3 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004939 271.0
LYD1_k127_3927882_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000004567 167.0
LYD1_k127_3927882_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000007783 149.0
LYD1_k127_3967190_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 8.129e-249 791.0
LYD1_k127_3967190_1 Amidohydrolase family - - - 2.187e-234 735.0
LYD1_k127_3967190_10 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000000000000000000000000000000003963 156.0
LYD1_k127_3967190_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000004298 128.0
LYD1_k127_3967190_12 lytic transglycosylase activity - - - 0.000000000000000722 86.0
LYD1_k127_3967190_2 response to antibiotic K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 607.0
LYD1_k127_3967190_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 495.0
LYD1_k127_3967190_4 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006135 418.0
LYD1_k127_3967190_5 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 366.0
LYD1_k127_3967190_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002188 254.0
LYD1_k127_3967190_7 acetyltransferases and hydrolases with the alpha beta hydrolase fold K01046 - 3.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000001055 244.0
LYD1_k127_3967190_8 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000001783 222.0
LYD1_k127_3967190_9 Acyltransferase - - - 0.000000000000000000000000000000000000000000000000000003509 196.0
LYD1_k127_3992588_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1261.0
LYD1_k127_3992588_1 Ftsk_gamma K03466 - - 6.932e-271 857.0
LYD1_k127_3992588_10 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004254 276.0
LYD1_k127_3992588_11 transporter K07238,K11021,K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001574 263.0
LYD1_k127_3992588_12 - - - - 0.000000000000000000000000000000000000000000000000000000000022 211.0
LYD1_k127_3992588_13 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000000000000006677 199.0
LYD1_k127_3992588_14 Late embryogenesis abundant protein - - - 0.00000000000000000000000000000000000000000000000004325 183.0
LYD1_k127_3992588_15 Uncharacterised protein family UPF0102 K07460 - - 0.0000000000000000000000000005512 117.0
LYD1_k127_3992588_16 Regulatory protein RecX K03565 - - 0.00000000000003436 81.0
LYD1_k127_3992588_17 COG4464 Capsular polysaccharide biosynthesis protein K01104 - 3.1.3.48 0.0000000008236 63.0
LYD1_k127_3992588_18 - - - - 0.0000005113 57.0
LYD1_k127_3992588_2 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 2.329e-251 782.0
LYD1_k127_3992588_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004255 584.0
LYD1_k127_3992588_4 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004752 561.0
LYD1_k127_3992588_5 MgsA AAA+ ATPase C terminal K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 546.0
LYD1_k127_3992588_6 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 539.0
LYD1_k127_3992588_7 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 488.0
LYD1_k127_3992588_8 asparaginase activity K01424 - 3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 421.0
LYD1_k127_3992588_9 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 288.0
LYD1_k127_400458_0 Tryptophan halogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004717 365.0
LYD1_k127_400458_1 Major facilitator Superfamily K08369 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001084 259.0
LYD1_k127_400458_2 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000004033 190.0
LYD1_k127_400458_3 acyl carrier protein - - - 0.000000000000000000005684 95.0
LYD1_k127_4019324_0 Mur ligase family, glutamate ligase domain K03802 - 6.3.2.29,6.3.2.30 7.971e-248 792.0
LYD1_k127_4019324_1 Aldehyde dehydrogenase family K00294 - 1.2.1.88 1.406e-245 787.0
LYD1_k127_4019324_10 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 319.0
LYD1_k127_4019324_11 ABC transporter K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 301.0
LYD1_k127_4019324_12 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 295.0
LYD1_k127_4019324_13 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005775 276.0
LYD1_k127_4019324_14 Disulphide isomerase - - - 0.000000000000000000000000000000000000000000000000000000002081 203.0
LYD1_k127_4019324_15 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000189 172.0
LYD1_k127_4019324_16 NifU-like N terminal domain K04488 - - 0.000000000000000000000000000000000000000000009152 167.0
LYD1_k127_4019324_17 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000009659 162.0
LYD1_k127_4019324_18 Belongs to the peptidase S51 family K13282 - 3.4.15.6 0.0000000000000000000000000000000000000003573 162.0
LYD1_k127_4019324_19 - - - - 0.00000000000000000000000000000000291 139.0
LYD1_k127_4019324_2 - - - - 1.89e-200 649.0
LYD1_k127_4019324_20 - - - - 0.000000000000000000000000000000003716 138.0
LYD1_k127_4019324_21 Transglycosylase associated protein - - - 0.0000000000000000000000000000001195 126.0
LYD1_k127_4019324_22 RimK-like ATP-grasp domain K03802 - 6.3.2.29,6.3.2.30 0.0000000000000000000000000000007184 136.0
LYD1_k127_4019324_23 RF-1 domain K15034 - - 0.000000000000000000000002659 108.0
LYD1_k127_4019324_24 - - - - 0.0000000000000000000001298 106.0
LYD1_k127_4019324_26 domain-containing protein K15223 - - 0.000000000192 67.0
LYD1_k127_4019324_27 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000000001289 66.0
LYD1_k127_4019324_3 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 471.0
LYD1_k127_4019324_4 secondary active sulfate transmembrane transporter activity K03321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 458.0
LYD1_k127_4019324_5 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 396.0
LYD1_k127_4019324_6 Xylose isomerase-like TIM barrel K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 370.0
LYD1_k127_4019324_7 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 352.0
LYD1_k127_4019324_8 Peptidase S24-like K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 344.0
LYD1_k127_4019324_9 DNA-binding transcription factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 336.0
LYD1_k127_4021308_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 GO:0000731,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0018130,GO:0019438,GO:0019985,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044464,GO:0046483,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009887 573.0
LYD1_k127_4021308_1 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 545.0
LYD1_k127_4021308_2 Lactonase, 7-bladed beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 544.0
LYD1_k127_4021308_3 Calcineurin-like phosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 289.0
LYD1_k127_4021308_4 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006391 294.0
LYD1_k127_4021308_5 transcriptional regulator - - - 0.000000000000000001578 100.0
LYD1_k127_4021308_6 YceI-like domain - - - 0.00000000000000001154 91.0
LYD1_k127_4021308_7 cellulase activity - - - 0.0000008108 58.0
LYD1_k127_4144393_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1327.0
LYD1_k127_4144393_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 379.0
LYD1_k127_4144393_2 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006323 358.0
LYD1_k127_4161942_0 H( )-stimulated, divalent metal cation uptake system K03322 - - 1.61e-212 667.0
LYD1_k127_4161942_1 Belongs to the carbamoyltransferase HypF family K04656 - - 3.291e-202 654.0
LYD1_k127_4161942_10 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 316.0
LYD1_k127_4161942_11 DNA restriction-modification system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 316.0
LYD1_k127_4161942_12 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 296.0
LYD1_k127_4161942_13 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 287.0
LYD1_k127_4161942_14 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002524 291.0
LYD1_k127_4161942_15 SNF2 family N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007083 305.0
LYD1_k127_4161942_16 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009452 271.0
LYD1_k127_4161942_17 Mechanosensitive ion channel K16052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008978 259.0
LYD1_k127_4161942_18 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000001034 182.0
LYD1_k127_4161942_19 alpha beta K06889 - - 0.000000000000000000000000000000000000000000008251 173.0
LYD1_k127_4161942_2 protein kinase activity K12132 - 2.7.11.1 1.298e-195 640.0
LYD1_k127_4161942_20 NUDIX domain - - - 0.00000000000000000000000000000000000000000006534 167.0
LYD1_k127_4161942_21 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000005439 151.0
LYD1_k127_4161942_22 DinB family - - - 0.000000000000000000000000000000000001091 147.0
LYD1_k127_4161942_23 Rhodanese Homology Domain - - - 0.00000000000000000000000001147 113.0
LYD1_k127_4161942_24 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000001008 87.0
LYD1_k127_4161942_3 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 535.0
LYD1_k127_4161942_4 DNA restriction-modification system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 542.0
LYD1_k127_4161942_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 495.0
LYD1_k127_4161942_6 Glycosyl transferase family 21 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 421.0
LYD1_k127_4161942_7 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293 420.0
LYD1_k127_4161942_8 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 316.0
LYD1_k127_4161942_9 LD-carboxypeptidase K01297 - 3.4.17.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 317.0
LYD1_k127_4162002_0 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009428 302.0
LYD1_k127_4162002_1 Histidine kinase - - - 0.000000000000000000000000589 121.0
LYD1_k127_4184924_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 5.065e-216 683.0
LYD1_k127_4184924_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 398.0
LYD1_k127_4184924_2 Peptidase dimerisation domain K13049 - - 0.000000000000000000000000000000000000000000000000000000009162 202.0
LYD1_k127_4184924_3 Protein of unknown function (DUF983) - - - 0.0000000000000000000000000000000001134 138.0
LYD1_k127_4204742_0 GGDEF domain containing protein K13243 - 3.1.4.52 0.00000000000000000000000000000000000000000000000000000000000000000006124 247.0
LYD1_k127_4204742_1 Transposase K07491 - - 0.000000003351 60.0
LYD1_k127_4212486_0 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007562 391.0
LYD1_k127_4212486_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 374.0
LYD1_k127_4212486_2 Sigma-54 interaction domain - - - 0.000000000000000000000000001257 114.0
LYD1_k127_4229987_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 3.584e-297 925.0
LYD1_k127_4229987_1 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 3.39e-286 917.0
LYD1_k127_4229987_10 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000001104 248.0
LYD1_k127_4229987_11 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000002015 224.0
LYD1_k127_4229987_12 nucleotidyltransferase activity - - - 0.000000000000000000000000000000000000000000000002771 176.0
LYD1_k127_4229987_2 CarboxypepD_reg-like domain - - - 3.195e-267 883.0
LYD1_k127_4229987_3 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 - 1.8.1.4 9.43e-228 712.0
LYD1_k127_4229987_4 tRNA synthetases class I (M) K01874 - 6.1.1.10 9.524e-227 711.0
LYD1_k127_4229987_5 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 507.0
LYD1_k127_4229987_6 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
LYD1_k127_4229987_7 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 400.0
LYD1_k127_4229987_8 Putative aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 394.0
LYD1_k127_4229987_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 346.0
LYD1_k127_4236759_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 459.0
LYD1_k127_4236759_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001061 255.0
LYD1_k127_4236759_2 - - - - 0.000000000007571 70.0
LYD1_k127_4241763_0 Dienelactone hydrolase family - - - 1.044e-294 919.0
LYD1_k127_4241763_1 Bacterial protein of unknown function (DUF885) - - - 1.718e-247 779.0
LYD1_k127_4241763_10 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000002762 195.0
LYD1_k127_4241763_11 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000009697 176.0
LYD1_k127_4241763_12 Mo-molybdopterin cofactor metabolic process K03636,K21147 GO:0000096,GO:0000097,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0019344,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.80,2.8.1.11 0.00000000000000000000007406 101.0
LYD1_k127_4241763_2 Predicted membrane protein (DUF2207) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 598.0
LYD1_k127_4241763_3 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008177 563.0
LYD1_k127_4241763_4 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009442 370.0
LYD1_k127_4241763_6 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004688 263.0
LYD1_k127_4241763_7 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002868 260.0
LYD1_k127_4241763_8 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004096 252.0
LYD1_k127_4241763_9 LemA family - - - 0.00000000000000000000000000000000000000000000000000000000001722 211.0
LYD1_k127_4257805_0 Collagenase K08303 - - 3e-323 1006.0
LYD1_k127_4257805_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000755 245.0
LYD1_k127_4285621_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1179.0
LYD1_k127_4285621_1 COG0433 Predicted ATPase K06915 - - 1.386e-311 965.0
LYD1_k127_4285621_10 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000582 447.0
LYD1_k127_4285621_11 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 409.0
LYD1_k127_4285621_12 Cellulose biosynthesis protein BcsQ K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 391.0
LYD1_k127_4285621_13 Thymidine kinase K00857 - 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003567 321.0
LYD1_k127_4285621_14 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 287.0
LYD1_k127_4285621_15 Glycosyl transferase family 2 K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007485 280.0
LYD1_k127_4285621_16 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007783 279.0
LYD1_k127_4285621_17 COGs COG2380 conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001108 279.0
LYD1_k127_4285621_18 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001787 263.0
LYD1_k127_4285621_19 DbpA RNA binding domain K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000001763 259.0
LYD1_k127_4285621_2 AAA domain K03546 - - 1.753e-221 718.0
LYD1_k127_4285621_20 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
LYD1_k127_4285621_21 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000003353 239.0
LYD1_k127_4285621_22 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000000000000000000000000289 229.0
LYD1_k127_4285621_23 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000000000000000005447 211.0
LYD1_k127_4285621_24 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000127 220.0
LYD1_k127_4285621_25 PFAM glutamine amidotransferase class-I K07010 - - 0.0000000000000000000000000000000000000000000000000000000001849 213.0
LYD1_k127_4285621_26 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000001831 196.0
LYD1_k127_4285621_27 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000003905 183.0
LYD1_k127_4285621_28 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000001742 170.0
LYD1_k127_4285621_29 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.00000000000000000000000000000000000000002117 154.0
LYD1_k127_4285621_3 POT family K03305 - - 4.279e-203 645.0
LYD1_k127_4285621_30 Lrp/AsnC ligand binding domain - - - 0.000000000000000000000000000000000005219 138.0
LYD1_k127_4285621_31 - - - - 0.00000000000000000000000000000008157 132.0
LYD1_k127_4285621_32 - - - - 0.000000000000000005925 94.0
LYD1_k127_4285621_33 - - - - 0.0000000000000002328 89.0
LYD1_k127_4285621_34 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006355,GO:0006725,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010106,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019725,GO:0030003,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0040007,GO:0042262,GO:0042592,GO:0042594,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090143,GO:0090304,GO:0097100,GO:0097159,GO:0098771,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000005857 70.0
LYD1_k127_4285621_35 - - - - 0.0000000003981 65.0
LYD1_k127_4285621_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 575.0
LYD1_k127_4285621_5 Oligopeptide/dipeptide transporter, C-terminal region K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007211 533.0
LYD1_k127_4285621_6 PFAM AMP-dependent synthetase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 539.0
LYD1_k127_4285621_7 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005188 509.0
LYD1_k127_4285621_8 peptidyl-lysine modification to peptidyl-hypusine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 464.0
LYD1_k127_4285621_9 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 454.0
LYD1_k127_4293346_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 494.0
LYD1_k127_4293346_1 Pfam:SusD K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 391.0
LYD1_k127_4293346_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 358.0
LYD1_k127_4293346_3 sodium:proton antiporter activity K03316 - - 0.0000000000000000000000000000000000000788 144.0
LYD1_k127_4313838_0 Prokaryotic cytochrome b561 - - - 4.734e-318 1000.0
LYD1_k127_4313838_1 HELICc2 K03722 - 3.6.4.12 2.171e-264 834.0
LYD1_k127_4313838_10 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000003796 237.0
LYD1_k127_4313838_11 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000004496 215.0
LYD1_k127_4313838_12 amine dehydrogenase activity K21449 - - 0.0000000000000000000000000000000000000000000000000002616 190.0
LYD1_k127_4313838_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000436 178.0
LYD1_k127_4313838_14 Thioredoxin-like domain K03671 - - 0.00000000000000000000000000000000000000000000001179 172.0
LYD1_k127_4313838_15 - - - - 0.0000000000000000000000000000000000000002676 160.0
LYD1_k127_4313838_16 Protein of unknown function (DUF1207) - - - 0.00000000000000000000000000000000001925 148.0
LYD1_k127_4313838_17 - - - - 0.0000000000000000000000001071 114.0
LYD1_k127_4313838_18 - - - - 0.00002748 51.0
LYD1_k127_4313838_19 formate dehydrogenase - - - 0.0003196 46.0
LYD1_k127_4313838_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 3.868e-220 693.0
LYD1_k127_4313838_20 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0004557 49.0
LYD1_k127_4313838_3 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 551.0
LYD1_k127_4313838_4 NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004817 491.0
LYD1_k127_4313838_5 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 340.0
LYD1_k127_4313838_6 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005069 319.0
LYD1_k127_4313838_7 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000823 319.0
LYD1_k127_4313838_8 Fumarylacetoacetate (FAA) hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009128 293.0
LYD1_k127_4313838_9 Doubled CXXCH motif (Paired_CXXCH_1) K08354 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001228 286.0
LYD1_k127_4314069_0 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor K00311 GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204 1.5.5.1 2.104e-204 652.0
LYD1_k127_4314069_1 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 423.0
LYD1_k127_4314069_2 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 355.0
LYD1_k127_4314069_3 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007074 328.0
LYD1_k127_4314069_4 Lysine methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000001138 216.0
LYD1_k127_4314069_5 - - - - 0.0000000000000006759 85.0
LYD1_k127_4403414_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 4.361e-284 878.0
LYD1_k127_4403414_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 1.014e-234 736.0
LYD1_k127_4403414_2 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 574.0
LYD1_k127_4403414_3 Ribosomal protein S2 K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 452.0
LYD1_k127_4403414_4 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 420.0
LYD1_k127_4403414_5 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000006887 252.0
LYD1_k127_4403414_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000005392 235.0
LYD1_k127_4403414_7 Ribosomal protein S9/S16 K02996 - - 0.0000000000000000000000000000000000000000000000000000000006592 203.0
LYD1_k127_4403414_8 Biotin-requiring enzyme - - - 0.0000000000000000000000000000000000000000000000000000002875 204.0
LYD1_k127_4403414_9 - - - - 0.00000000000000000000000000000000000000000565 166.0
LYD1_k127_4440335_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 509.0
LYD1_k127_4440335_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 484.0
LYD1_k127_4440335_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 396.0
LYD1_k127_4440335_3 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 382.0
LYD1_k127_4440335_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 329.0
LYD1_k127_4440335_5 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000000000000000000000000000001641 192.0
LYD1_k127_4440335_6 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000000343 136.0
LYD1_k127_4440335_7 Ribosomal L32p protein family K02911 - - 0.00000000000000000000000009841 106.0
LYD1_k127_4440335_8 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.0001164 46.0
LYD1_k127_4466236_0 Flavoprotein involved in K transport - - - 7.293e-227 715.0
LYD1_k127_4466236_2 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000001228 76.0
LYD1_k127_4466236_3 DnaJ molecular chaperone homology domain - - - 0.0004566 43.0
LYD1_k127_4468099_0 Transglycosylase K21464 - 2.4.1.129,3.4.16.4 2.361e-246 783.0
LYD1_k127_4468099_1 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000003314 225.0
LYD1_k127_4503708_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000001969 264.0
LYD1_k127_4503708_1 - - - - 0.00000000000000000005235 92.0
LYD1_k127_4550653_0 Bacterial membrane protein YfhO - - - 1.36e-243 777.0
LYD1_k127_4550653_1 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 5.217e-208 651.0
LYD1_k127_4550653_2 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 454.0
LYD1_k127_4550653_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 342.0
LYD1_k127_4550653_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000006218 182.0
LYD1_k127_4557406_0 Acyl-CoA dehydrogenase, middle domain - GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 8.569e-204 652.0
LYD1_k127_4557406_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 606.0
LYD1_k127_4557406_10 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000000000000000000000005881 138.0
LYD1_k127_4557406_11 - - - - 0.000000000000000000003553 104.0
LYD1_k127_4557406_13 mercury ion transmembrane transporter activity K07213 - - 0.00000001864 59.0
LYD1_k127_4557406_2 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 604.0
LYD1_k127_4557406_3 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 448.0
LYD1_k127_4557406_4 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 362.0
LYD1_k127_4557406_5 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 352.0
LYD1_k127_4557406_6 GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 302.0
LYD1_k127_4557406_7 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000001162 234.0
LYD1_k127_4557406_8 SURF1 family K14998 - - 0.000000000000000000000000000000000000000000000000000000000000000008245 235.0
LYD1_k127_4574329_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007711 358.0
LYD1_k127_4574329_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001522 278.0
LYD1_k127_4574329_2 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005466 279.0
LYD1_k127_4574329_3 Glycosyl transferase, family 2 K07011 - - 0.0000000000000000000000000000000000000005763 166.0
LYD1_k127_4574329_4 - - - - 0.0000000003835 72.0
LYD1_k127_4574329_5 Lysine methyltransferase - - - 0.000004978 53.0
LYD1_k127_4577556_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 474.0
LYD1_k127_4577556_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 304.0
LYD1_k127_4577556_2 Cytochrome c K07243 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 309.0
LYD1_k127_4577556_3 Glutathione peroxidase - - - 0.00000000000000000000000000000000000000000000000006504 184.0
LYD1_k127_4577556_4 CYTH domain K01768,K05873 - 4.6.1.1 0.0000000000000000000000000000000000000000000000001433 183.0
LYD1_k127_4577556_5 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000398 178.0
LYD1_k127_4577556_6 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000004565 141.0
LYD1_k127_4629373_0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003591 412.0
LYD1_k127_4629373_1 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002083 251.0
LYD1_k127_4629373_2 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000101 208.0
LYD1_k127_4629373_3 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000001042 188.0
LYD1_k127_4629373_4 nucleotidyltransferase activity - - - 0.00000000000000000000001076 102.0
LYD1_k127_46389_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1713.0
LYD1_k127_46389_1 Fumarase C C-terminus K01744 - 4.3.1.1 3.275e-226 708.0
LYD1_k127_46389_10 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 349.0
LYD1_k127_46389_11 O-acyltransferase activity K13018 - 2.3.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000001326 266.0
LYD1_k127_46389_12 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004034 261.0
LYD1_k127_46389_13 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000005683 237.0
LYD1_k127_46389_14 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000001595 234.0
LYD1_k127_46389_15 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000161 222.0
LYD1_k127_46389_16 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000000001279 216.0
LYD1_k127_46389_17 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000000000000000000007143 213.0
LYD1_k127_46389_18 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000004415 182.0
LYD1_k127_46389_19 Ribosomal L28 family K02902 - - 0.0000000000000000000000000000000009409 130.0
LYD1_k127_46389_2 UDP binding domain K13015 - 1.1.1.136 3.945e-212 666.0
LYD1_k127_46389_20 Outer membrane lipoprotein K05807 - - 0.00000000000000000000000000000006757 131.0
LYD1_k127_46389_21 Ribosomal protein L36 K02919 - - 0.000000000000003397 75.0
LYD1_k127_46389_3 UDP binding domain K00012 - 1.1.1.22 2.914e-200 632.0
LYD1_k127_46389_4 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 541.0
LYD1_k127_46389_5 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005711 534.0
LYD1_k127_46389_6 Oxidoreductase family, C-terminal alpha/beta domain K13020 - 1.1.1.335 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 528.0
LYD1_k127_46389_7 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 480.0
LYD1_k127_46389_8 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 389.0
LYD1_k127_46389_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 362.0
LYD1_k127_4656426_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 348.0
LYD1_k127_4656426_1 Capsule assembly protein Wzi - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000123 295.0
LYD1_k127_4656426_2 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001494 274.0
LYD1_k127_467888_0 Carboxypeptidase regulatory-like domain - - - 0.0 1029.0
LYD1_k127_467888_1 Peptidase family M20/M25/M40 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 463.0
LYD1_k127_467888_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009222 299.0
LYD1_k127_467888_3 Deoxynucleoside kinase - - - 0.0005907 48.0
LYD1_k127_4787869_0 ABC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 452.0
LYD1_k127_4787869_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000107 288.0
LYD1_k127_4787869_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002817 242.0
LYD1_k127_4787869_3 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000005138 243.0
LYD1_k127_4787869_4 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000007303 209.0
LYD1_k127_4787869_5 - - - - 0.00000000000000000000000000000000000000000009262 162.0
LYD1_k127_4787869_6 DinB superfamily - - - 0.0000000000000000000000000000000004461 138.0
LYD1_k127_4787869_7 deoxynucleoside kinase - - - 0.00001141 57.0
LYD1_k127_4787869_8 PFAM deoxynucleoside kinase - - - 0.0004985 49.0
LYD1_k127_4828540_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 437.0
LYD1_k127_4828540_1 ATP phosphoribosyltransferase K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004016 387.0
LYD1_k127_4828540_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 326.0
LYD1_k127_4828540_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000000000000000006358 220.0
LYD1_k127_4828540_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000000000000000000000004568 210.0
LYD1_k127_4828540_5 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000001192 141.0
LYD1_k127_4828540_6 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000376 96.0
LYD1_k127_4828540_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000008506 92.0
LYD1_k127_4832253_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 541.0
LYD1_k127_4832253_1 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 383.0
LYD1_k127_4832253_2 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005254 249.0
LYD1_k127_4832253_3 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001375 241.0
LYD1_k127_4832253_4 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000001509 216.0
LYD1_k127_4832253_5 Vacuole effluxer Atg22 like K06902 - - 0.000000000000000000000000000000000003514 147.0
LYD1_k127_4832253_6 Opacity protein - - - 0.00000000002759 73.0
LYD1_k127_4832253_9 - - - - 0.0005953 46.0
LYD1_k127_483300_0 Sortilin, neurotensin receptor 3, - - - 1.917e-315 1002.0
LYD1_k127_483300_1 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 544.0
LYD1_k127_483300_2 CAAX prenyl protease N-terminal, five membrane helices K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 391.0
LYD1_k127_483300_3 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000005079 150.0
LYD1_k127_4833162_0 Bacterial regulatory protein, Fis family - - - 4.41e-203 643.0
LYD1_k127_4833162_1 - - - - 0.00000000000000000000000000000000000000000000000000000000001915 214.0
LYD1_k127_4848703_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 555.0
LYD1_k127_4848703_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 487.0
LYD1_k127_4848703_2 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 368.0
LYD1_k127_4848703_3 GDP-mannose 4,6 dehydratase K01711 - 4.2.1.47 0.000000000000000000000000005111 113.0
LYD1_k127_4850930_0 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000004405 223.0
LYD1_k127_4850930_1 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000000000000007142 138.0
LYD1_k127_486078_0 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.0 1049.0
LYD1_k127_486078_1 aminopeptidase N - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009525 601.0
LYD1_k127_486078_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000000000000000000000000000000000000000002328 166.0
LYD1_k127_486078_11 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000004244 163.0
LYD1_k127_486078_12 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000004082 136.0
LYD1_k127_486078_13 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.000000000000000000000000212 113.0
LYD1_k127_486078_15 Bacterial protein of unknown function (DUF885) - - - 0.000003241 59.0
LYD1_k127_486078_2 Thiolase, C-terminal domain K02615 - 2.3.1.174,2.3.1.223 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 571.0
LYD1_k127_486078_3 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 509.0
LYD1_k127_486078_4 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 444.0
LYD1_k127_486078_5 protein histidine kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 398.0
LYD1_k127_486078_6 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 373.0
LYD1_k127_486078_7 Bacterial transferase hexapeptide (six repeats) K02617 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008167 315.0
LYD1_k127_486078_8 GYD domain - - - 0.000000000000000000000000000000000000000000000000000009485 190.0
LYD1_k127_486078_9 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000006398 182.0
LYD1_k127_4864494_0 FtsX-like permease family K02004 - - 1.541e-266 848.0
LYD1_k127_4864494_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007779 342.0
LYD1_k127_4864494_2 ABC-type transport system involved in lysophospholipase L1 biosynthesis ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005603 274.0
LYD1_k127_4864494_3 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000006647 229.0
LYD1_k127_4864494_4 peptidase activity, acting on L-amino acid peptides K20276 - - 0.000001806 59.0
LYD1_k127_487586_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 527.0
LYD1_k127_487586_1 Alcohol dehydrogenase GroES-like domain K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 364.0
LYD1_k127_487586_10 PFAM Hemerythrin HHE cation binding domain protein - - - 0.000000000000000001584 89.0
LYD1_k127_487586_2 polyketide synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 317.0
LYD1_k127_487586_3 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008505 309.0
LYD1_k127_487586_4 Enoyl-(Acyl carrier protein) reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000004087 249.0
LYD1_k127_487586_5 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003844 242.0
LYD1_k127_487586_6 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000002137 191.0
LYD1_k127_487586_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.0000000000000000000000000000000000000000000000006182 199.0
LYD1_k127_487586_8 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.000000000000000000000000000000000000000000000003838 174.0
LYD1_k127_487586_9 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000848 129.0
LYD1_k127_4884696_0 Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) K02551 - 2.2.1.9 6.912e-197 631.0
LYD1_k127_4884696_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 604.0
LYD1_k127_4884696_10 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 319.0
LYD1_k127_4884696_11 FMN reductase (NADPH) activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001161 258.0
LYD1_k127_4884696_12 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000209 263.0
LYD1_k127_4884696_13 Transcription elongation factor, N-terminal K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000004253 226.0
LYD1_k127_4884696_14 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000000000000000000000000004757 211.0
LYD1_k127_4884696_15 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000217 209.0
LYD1_k127_4884696_16 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000667 209.0
LYD1_k127_4884696_17 Cytochrome C and Quinol oxidase polypeptide I - - - 0.00000000000000000000000000000000000000000000000000000002483 199.0
LYD1_k127_4884696_18 Cytochrome C and Quinol oxidase polypeptide I K15862 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000002721 200.0
LYD1_k127_4884696_19 UbiA prenyltransferase family K02548 - 2.5.1.74 0.0000000000000000000000000000000000000003441 168.0
LYD1_k127_4884696_2 Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily K01911 - 6.2.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 547.0
LYD1_k127_4884696_20 - - - - 0.00000000000000000000000000034 115.0
LYD1_k127_4884696_21 Belongs to the P-Pant transferase superfamily K06133 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000007914 98.0
LYD1_k127_4884696_22 Cupin 2, conserved barrel domain protein - - - 0.00000000001198 65.0
LYD1_k127_4884696_23 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.00000001334 62.0
LYD1_k127_4884696_3 Luciferase-like monooxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006248 529.0
LYD1_k127_4884696_4 Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) K01661 - 4.1.3.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 474.0
LYD1_k127_4884696_5 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 444.0
LYD1_k127_4884696_6 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003816 387.0
LYD1_k127_4884696_7 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 355.0
LYD1_k127_4884696_8 chorismate binding enzyme K02552 - 5.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 342.0
LYD1_k127_4884696_9 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 335.0
LYD1_k127_4899739_0 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 557.0
LYD1_k127_4899739_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 298.0
LYD1_k127_4899739_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000001263 151.0
LYD1_k127_4919913_0 Penicillin amidase K01434 - 3.5.1.11 4.09e-237 761.0
LYD1_k127_4919913_1 Sugar (and other) transporter - - - 7.164e-200 631.0
LYD1_k127_4919913_2 Beta-lactamase K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 324.0
LYD1_k127_4919913_3 Peptidase M15 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001136 284.0
LYD1_k127_4919913_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002427 273.0
LYD1_k127_4919913_5 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000002816 191.0
LYD1_k127_4919913_6 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000281 169.0
LYD1_k127_4919913_7 DUF218 domain - - - 0.000000000000000000000000000000000001568 149.0
LYD1_k127_4919913_8 Prokaryotic N-terminal methylation motif - - - 0.0000000000000003627 86.0
LYD1_k127_4971839_0 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 451.0
LYD1_k127_4971839_1 AMIN domain K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 384.0
LYD1_k127_4971839_2 Fimbrial assembly protein (PilN) - - - 0.00000000000000000000000000000000000000000000000001115 189.0
LYD1_k127_4971839_3 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000004053 159.0
LYD1_k127_4971839_4 - - - - 0.000000000000000000000000000000000001561 144.0
LYD1_k127_4971839_5 - - - - 0.00001382 57.0
LYD1_k127_4982731_0 Heat shock 70 kDa protein K04043 - - 0.0 1094.0
LYD1_k127_4982731_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 8.764e-295 927.0
LYD1_k127_4982731_10 Transcriptional regulatory protein, C terminal K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002566 267.0
LYD1_k127_4982731_11 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000000000000001807 233.0
LYD1_k127_4982731_12 HAMP domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000006191 232.0
LYD1_k127_4982731_13 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000000000000468 209.0
LYD1_k127_4982731_15 - - - - 0.0000000000000000000000000000003025 129.0
LYD1_k127_4982731_16 ketosteroid isomerase - - - 0.0000000000000000000000000259 120.0
LYD1_k127_4982731_17 Trypsin K04771 - 3.4.21.107 0.0000000000000000000005622 100.0
LYD1_k127_4982731_2 Tetratricopeptide repeat K08884,K12132 - 2.7.11.1 3.703e-229 732.0
LYD1_k127_4982731_3 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 482.0
LYD1_k127_4982731_4 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 497.0
LYD1_k127_4982731_5 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 402.0
LYD1_k127_4982731_6 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 387.0
LYD1_k127_4982731_7 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 340.0
LYD1_k127_4982731_8 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 313.0
LYD1_k127_4982731_9 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 302.0
LYD1_k127_4999150_0 Insulinase (Peptidase family M16) K07263 - - 0.0 1192.0
LYD1_k127_4999150_1 Amidohydrolase family - - - 5.181e-237 753.0
LYD1_k127_4999150_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 514.0
LYD1_k127_4999150_3 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 435.0
LYD1_k127_4999150_4 Stage II sporulation protein K06381 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006181 355.0
LYD1_k127_4999150_5 Domain of unknown function (DUF4105) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 317.0
LYD1_k127_4999150_6 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0008038 46.0
LYD1_k127_5019406_0 Tricorn protease homolog - - - 0.0 1172.0
LYD1_k127_5030701_0 Domain of unknown function (DUF2172) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 559.0
LYD1_k127_5030701_1 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006042 468.0
LYD1_k127_5030701_2 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000002463 228.0
LYD1_k127_5030701_3 aminoglycoside 3-N-acetyltransferase activity K00662 - 2.3.1.81 0.00000000000000000000000000000001419 138.0
LYD1_k127_5030701_4 protein methyltransferase activity - - - 0.0000000008663 64.0
LYD1_k127_5030701_5 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0002688 44.0
LYD1_k127_5043095_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1119.0
LYD1_k127_5043095_1 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 7.167e-224 702.0
LYD1_k127_5043095_2 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 501.0
LYD1_k127_5043095_3 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 407.0
LYD1_k127_5043095_4 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000181 273.0
LYD1_k127_5043095_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000000009099 211.0
LYD1_k127_5043095_6 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000000000000000006781 126.0
LYD1_k127_5043095_8 Sporulation related domain - - - 0.000000000007884 68.0
LYD1_k127_504598_0 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 544.0
LYD1_k127_504598_1 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006757 304.0
LYD1_k127_504598_2 Semialdehyde dehydrogenase, NAD binding domain K00133 - 1.2.1.11 0.0000000000000000000000000000007701 128.0
LYD1_k127_5051087_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 453.0
LYD1_k127_5051087_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 405.0
LYD1_k127_5051087_2 Major facilitator superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 385.0
LYD1_k127_5051087_3 - - - - 0.00000003955 60.0
LYD1_k127_5056866_0 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009192 409.0
LYD1_k127_5056866_1 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 402.0
LYD1_k127_5056866_2 Uncharacterized protein family (UPF0051) K09014 - - 0.0000000000000000000000000000000000000000000000000001853 185.0
LYD1_k127_5058251_0 peroxidase activity K00435 - - 0.0000000000000000000000000000000000000000000000000000000000000000002061 250.0
LYD1_k127_5058251_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000004513 204.0
LYD1_k127_5058251_2 beta-N-acetylhexosaminidase activity K02388,K02396,K04618 - 1.1.3.9 0.00000217 51.0
LYD1_k127_508166_0 TonB dependent receptor K21573 - - 2.41e-320 1011.0
LYD1_k127_508166_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K21572 - - 3.81e-212 675.0
LYD1_k127_508166_2 Alpha-amylase domain K01176 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 420.0
LYD1_k127_508166_3 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 371.0
LYD1_k127_5140907_0 HD domain - - - 2.21e-206 656.0
LYD1_k127_5140907_1 Protein of unknown function (DUF3303) - - - 0.00000000000000000000000000000000000000000000000000000007525 197.0
LYD1_k127_5140907_2 - K01992 - - 0.0000000000000000000000000000000000000000002721 164.0
LYD1_k127_5140907_3 - - - - 0.000000000000000000000000000000000000007477 147.0
LYD1_k127_5140907_4 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000003805 104.0
LYD1_k127_5152664_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1267.0
LYD1_k127_5152664_1 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 8.524e-279 891.0
LYD1_k127_5152664_10 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 324.0
LYD1_k127_5152664_11 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 320.0
LYD1_k127_5152664_12 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 301.0
LYD1_k127_5152664_13 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004798 293.0
LYD1_k127_5152664_14 HAMP domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000006361 279.0
LYD1_k127_5152664_15 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001289 258.0
LYD1_k127_5152664_16 phosphomethylpyrimidine kinase activity K00941,K03147,K14153 - 2.5.1.3,2.7.1.49,2.7.4.7,4.1.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000002667 256.0
LYD1_k127_5152664_17 RNA 2'-O ribose methyltransferase substrate binding K03437 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003187 254.0
LYD1_k127_5152664_18 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002478 253.0
LYD1_k127_5152664_19 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000003034 242.0
LYD1_k127_5152664_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 3.144e-221 692.0
LYD1_k127_5152664_20 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000000000001022 210.0
LYD1_k127_5152664_21 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000000000002986 214.0
LYD1_k127_5152664_22 - - - - 0.00000000000000000000000000000000000000000000000000009794 196.0
LYD1_k127_5152664_23 - - - - 0.00000000000000000000000000000000000000000000004521 182.0
LYD1_k127_5152664_24 Ribosomal protein S16 K02959 - - 0.00000000000000000000000000000000002819 138.0
LYD1_k127_5152664_25 - - - - 0.000000000000000000000000000000006799 139.0
LYD1_k127_5152664_26 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000004059 115.0
LYD1_k127_5152664_27 - - - - 0.0000000000000631 80.0
LYD1_k127_5152664_28 - - - - 0.00000001455 66.0
LYD1_k127_5152664_29 Putative adhesin - - - 0.000005336 58.0
LYD1_k127_5152664_3 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 565.0
LYD1_k127_5152664_4 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 548.0
LYD1_k127_5152664_5 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 416.0
LYD1_k127_5152664_6 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006802 407.0
LYD1_k127_5152664_7 Zn peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 381.0
LYD1_k127_5152664_8 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 350.0
LYD1_k127_5152664_9 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005178 325.0
LYD1_k127_5181078_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.65e-219 691.0
LYD1_k127_5181078_1 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 529.0
LYD1_k127_5181078_2 Psort location Cytoplasmic, score 8.87 - - - 0.00000000000000000000000000000000000000000000000001176 193.0
LYD1_k127_521864_0 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 526.0
LYD1_k127_521864_1 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 316.0
LYD1_k127_521864_2 Cupin domain - - - 0.0000000000000000000000000000000000000000000000002417 179.0
LYD1_k127_5238664_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 316.0
LYD1_k127_5238664_1 - - - - 0.00000000000000000000000000000000000000000000000001455 190.0
LYD1_k127_5242164_0 Belongs to the ClpA ClpB family K03696 - - 8.798e-271 850.0
LYD1_k127_5242164_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 3.829e-234 733.0
LYD1_k127_5242164_10 - - - - 0.00000000000000000000000000000000000000000000000000000196 202.0
LYD1_k127_5242164_11 dioxygenase activity - - - 0.000000000000000000000000000000001872 138.0
LYD1_k127_5242164_12 Trm112p-like protein K09791 - - 0.0000000000000000000006581 100.0
LYD1_k127_5242164_2 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009828 537.0
LYD1_k127_5242164_3 MacB-like periplasmic core domain K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 498.0
LYD1_k127_5242164_4 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009019 484.0
LYD1_k127_5242164_5 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 375.0
LYD1_k127_5242164_6 Diguanylate cyclase, GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007437 349.0
LYD1_k127_5242164_7 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007224 295.0
LYD1_k127_5242164_8 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism - - - 0.0000000000000000000000000000000000000000000000000000000000000000009542 239.0
LYD1_k127_5242164_9 UvrB/uvrC motif K19411 - - 0.000000000000000000000000000000000000000000000000000000003886 203.0
LYD1_k127_5284669_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 1.353e-303 949.0
LYD1_k127_5284669_1 PglZ domain - - - 1.508e-276 857.0
LYD1_k127_5284669_10 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 385.0
LYD1_k127_5284669_11 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 377.0
LYD1_k127_5284669_12 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 389.0
LYD1_k127_5284669_13 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 343.0
LYD1_k127_5284669_14 HNH nucleases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007875 329.0
LYD1_k127_5284669_15 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 338.0
LYD1_k127_5284669_16 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 308.0
LYD1_k127_5284669_17 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 307.0
LYD1_k127_5284669_18 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 305.0
LYD1_k127_5284669_19 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001427 259.0
LYD1_k127_5284669_2 ABC transporter transmembrane region K11085 - - 9.44e-230 726.0
LYD1_k127_5284669_20 PFAM 3-beta hydroxysteroid dehydrogenase isomerase K22320 - 1.1.1.412 0.000000000000000000000000000000000000000000000000000000000000000000007487 249.0
LYD1_k127_5284669_21 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000005153 218.0
LYD1_k127_5284669_22 - - - - 0.0000000000000000000000000000000000000000000000000000000000001045 221.0
LYD1_k127_5284669_23 transferase activity, transferring glycosyl groups K13057 - 2.4.1.245 0.000000000000000000000000000000000000000000000000000000000003674 222.0
LYD1_k127_5284669_24 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000001608 205.0
LYD1_k127_5284669_25 Glycosyl transferase family 2 K12984 - - 0.00000000000000000000000000000000000000000000000000000002706 205.0
LYD1_k127_5284669_26 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000007103 169.0
LYD1_k127_5284669_27 PFAM Glycosyl transferase, group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000002713 171.0
LYD1_k127_5284669_28 GtrA-like protein K00995 - 2.7.8.5 0.000000000000000000000000000000001731 139.0
LYD1_k127_5284669_29 Preprotein translocase subunit K03210 - - 0.0000000000000000000000000000027 126.0
LYD1_k127_5284669_3 Aminotransferase class I and II K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 579.0
LYD1_k127_5284669_30 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000007728 130.0
LYD1_k127_5284669_31 - - - - 0.0000000000000000000000000002174 121.0
LYD1_k127_5284669_32 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.00000000000000000000001937 109.0
LYD1_k127_5284669_33 Thiamine monophosphate synthase K00788,K10810 - 2.5.1.3,5.3.99.10 0.000000000000000000001898 105.0
LYD1_k127_5284669_34 acetyltransferase - - - 0.00000000000000004864 93.0
LYD1_k127_5284669_35 Glycosyl transferases group 1 - - - 0.0000000000006082 81.0
LYD1_k127_5284669_36 Thiamine biosynthesis protein ThiS K03154 - - 0.00000000002089 68.0
LYD1_k127_5284669_37 - - - - 0.000000001929 64.0
LYD1_k127_5284669_4 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 556.0
LYD1_k127_5284669_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 544.0
LYD1_k127_5284669_6 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008314 538.0
LYD1_k127_5284669_7 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009059 542.0
LYD1_k127_5284669_8 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 427.0
LYD1_k127_5284669_9 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 420.0
LYD1_k127_5308307_0 Sortilin, neurotensin receptor 3, - - - 0.0 1443.0
LYD1_k127_5308307_1 KaiC K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 571.0
LYD1_k127_5308307_10 FtsX-like permease family K02004 - - 0.000000001209 63.0
LYD1_k127_5308307_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006441 539.0
LYD1_k127_5308307_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 332.0
LYD1_k127_5308307_4 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009905 337.0
LYD1_k127_5308307_5 zinc D-Ala-D-Ala carboxypeptidase activity K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000000001948 243.0
LYD1_k127_5308307_6 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000005799 235.0
LYD1_k127_5308307_7 PFAM Nicotinamide mononucleotide transporter PnuC K03811 - - 0.00000000000000000000000000000000000000000000000000004971 194.0
LYD1_k127_5308307_8 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000006112 187.0
LYD1_k127_5324236_0 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 324.0
LYD1_k127_5324236_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 330.0
LYD1_k127_5324236_2 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 302.0
LYD1_k127_5324236_3 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000003236 153.0
LYD1_k127_5324236_4 OsmC-like protein - - - 0.00000002922 62.0
LYD1_k127_5333183_0 nitrous-oxide reductase activity K00376,K02275 GO:0000041,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0015677,GO:0030001,GO:0042597,GO:0044464,GO:0051179,GO:0051234 1.7.2.4,1.9.3.1 1.228e-317 985.0
LYD1_k127_5333183_1 alginic acid biosynthetic process K07218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005872 381.0
LYD1_k127_5333183_2 ATPase activity K01990,K19340 - - 0.0000000000000000000000000000000000000000000000000000000000000000003075 239.0
LYD1_k127_5333183_3 - K01992,K19341 - - 0.00000000000000000000000000000000000000000000000000000005104 207.0
LYD1_k127_5333183_4 lipoprotein involved in nitrous oxide reduction - - - 0.00000000000000000000000000000000000000001604 173.0
LYD1_k127_5333183_5 PFAM blue (type 1) copper domain protein K00368 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.2.1 0.00000000000000000000000000000000005787 140.0
LYD1_k127_5333183_6 PFAM CBS domain - - - 0.000000006145 65.0
LYD1_k127_5339669_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.728e-231 727.0
LYD1_k127_5339669_1 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632 360.0
LYD1_k127_5339669_2 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000002687 196.0
LYD1_k127_5339669_3 - - - - 0.000000000000000000000000000000000000000000000000000002083 198.0
LYD1_k127_5354846_0 cellular manganese ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 369.0
LYD1_k127_5354846_1 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005774 351.0
LYD1_k127_5354846_2 Protein involved in meta-pathway of phenol degradation - - - 0.0000000000000000000000000000000000002036 146.0
LYD1_k127_5354846_3 PDZ domain (Also known as DHR or GLGF) - - - 0.0000000000000000000000004221 120.0
LYD1_k127_5373681_0 permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 433.0
LYD1_k127_5373681_1 cAMP biosynthetic process - - - 0.000000000003152 71.0
LYD1_k127_5373681_2 ABC transporter K01990 - - 0.000000000004766 76.0
LYD1_k127_5433744_0 Serine dehydratase alpha chain K01752 - 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 436.0
LYD1_k127_5433744_1 Serine dehydratase beta chain K01752 - 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 361.0
LYD1_k127_5433744_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 310.0
LYD1_k127_5433744_3 PspA/IM30 family K03969 - - 0.0000000000006515 73.0
LYD1_k127_5474897_0 Belongs to the universal stress protein A family - - - 0.000000000000000000000002313 113.0
LYD1_k127_5485830_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 390.0
LYD1_k127_5485830_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 326.0
LYD1_k127_5485830_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000002286 181.0
LYD1_k127_5490256_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 586.0
LYD1_k127_5490256_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 509.0
LYD1_k127_5490256_2 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001992 267.0
LYD1_k127_5502103_0 PFAM NAD dependent epimerase dehydratase family K12454 - 5.1.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 548.0
LYD1_k127_5502103_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 385.0
LYD1_k127_5502103_2 PFAM Glycosyl transferase family 4 K02851,K13007 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 317.0
LYD1_k127_5502103_3 Capsule assembly protein Wzi - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006353 264.0
LYD1_k127_5502103_4 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000001044 205.0
LYD1_k127_5502103_5 Sulfatase - - - 0.0000000000000000000000000000000000000004557 167.0
LYD1_k127_5502103_6 NAD(P)H-binding K01784 - 5.1.3.2 0.0000000000000000000000000000000000001187 155.0
LYD1_k127_5502103_7 Glycosyl transferases group 1 - - - 0.000000000000000000000000000536 125.0
LYD1_k127_5502103_8 Glycosyl transferase 4-like domain K03208 - - 0.000000000000122 77.0
LYD1_k127_5514110_0 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009817 342.0
LYD1_k127_5514110_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000001505 227.0
LYD1_k127_5533401_0 Capsule assembly protein Wzi - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 324.0
LYD1_k127_5533401_1 undecaprenyl-phosphate glucose phosphotransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002057 270.0
LYD1_k127_5557842_0 Dipeptidyl carboxypeptidase K01284 - 3.4.15.5 1.889e-300 936.0
LYD1_k127_5557842_1 Rieske [2Fe-2S] domain - - - 0.00000000000000000000000000000000007295 138.0
LYD1_k127_5567891_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 544.0
LYD1_k127_5579048_0 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 347.0
LYD1_k127_5579048_1 Phage integrase, N-terminal SAM-like domain K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000004223 236.0
LYD1_k127_5579048_2 Oxidoreductase molybdopterin binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000002274 221.0
LYD1_k127_558573_0 4 iron, 4 sulfur cluster binding - - - 6.646e-224 718.0
LYD1_k127_558573_1 electron transfer activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007332 565.0
LYD1_k127_558573_2 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002567 434.0
LYD1_k127_558573_3 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001327 277.0
LYD1_k127_558573_4 Prephenate dehydrogenase K00210,K00220,K04517 - 1.3.1.12,1.3.1.43 0.000000000000000000000000000000000009159 147.0
LYD1_k127_558573_5 Transcriptional regulator - - - 0.00000000000000000000000000000000392 136.0
LYD1_k127_558573_6 - - - - 0.000000000000000000508 94.0
LYD1_k127_558573_7 Chorismate mutase K00661,K04092,K04093,K04516,K14170 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 2.3.1.79,4.2.1.51,5.4.99.5 0.000000000002249 72.0
LYD1_k127_5590611_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 0.0 1362.0
LYD1_k127_5590611_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1137.0
LYD1_k127_5590611_10 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 306.0
LYD1_k127_5590611_11 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 285.0
LYD1_k127_5590611_12 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000003008 256.0
LYD1_k127_5590611_13 GAF domain - - - 0.0000000000000000000000000000000000000000000000000002406 197.0
LYD1_k127_5590611_14 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K08313,K08314 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016829,GO:0016830,GO:0016832,GO:0044424,GO:0044464,GO:0097023 2.2.1.2 0.0000000000000000000000000000000000000000009826 165.0
LYD1_k127_5590611_15 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000005574 139.0
LYD1_k127_5590611_16 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000006137 130.0
LYD1_k127_5590611_17 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000002607 118.0
LYD1_k127_5590611_18 Glycosyl transferase 4-like domain K08256,K12995 - 2.4.1.345,2.4.1.348 0.000000000000006484 80.0
LYD1_k127_5590611_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.556e-237 740.0
LYD1_k127_5590611_3 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 2.168e-212 668.0
LYD1_k127_5590611_4 Trypsin K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 517.0
LYD1_k127_5590611_5 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 423.0
LYD1_k127_5590611_6 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006234 419.0
LYD1_k127_5590611_7 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 353.0
LYD1_k127_5590611_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 341.0
LYD1_k127_5590611_9 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 320.0
LYD1_k127_5595567_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008745 567.0
LYD1_k127_5595567_1 beta-N-acetylglucosaminidase K01197 - 3.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 471.0
LYD1_k127_5595567_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 469.0
LYD1_k127_5595567_3 Phosphoesterase family K01114 - 3.1.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 419.0
LYD1_k127_5595567_4 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 341.0
LYD1_k127_5595567_5 Belongs to the MtfA family K09933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 308.0
LYD1_k127_5595567_6 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 295.0
LYD1_k127_5595567_7 NmrA-like family - - - 0.000000000000000000000000000000000000000000004844 175.0
LYD1_k127_5595567_8 Protein of unknown function (DUF1697) - - - 0.000000000000000000005694 101.0
LYD1_k127_5597473_0 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006534 485.0
LYD1_k127_5597473_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 328.0
LYD1_k127_5597473_2 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008575 291.0
LYD1_k127_5597473_3 Peptidase C26 K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000005616 271.0
LYD1_k127_5597473_5 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000002838 146.0
LYD1_k127_5600227_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000441 596.0
LYD1_k127_5600227_1 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000006196 265.0
LYD1_k127_5600227_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000001155 230.0
LYD1_k127_5600227_3 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001535 222.0
LYD1_k127_5600227_4 Uncharacterised protein family (UPF0182) K09118 - - 0.000000000000000000000000000000000000000000000000000000000000008385 234.0
LYD1_k127_5600227_7 lactoylglutathione lyase activity - - - 0.0000000000000000000000001527 114.0
LYD1_k127_5610829_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 439.0
LYD1_k127_5610829_1 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 304.0
LYD1_k127_5610829_2 ISXO2-like transposase domain - - - 0.00000001047 64.0
LYD1_k127_5665170_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 2.043e-218 689.0
LYD1_k127_5665170_1 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 616.0
LYD1_k127_5665170_2 Telomere recombination K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007838 334.0
LYD1_k127_5665170_3 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005758 318.0
LYD1_k127_5665170_4 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003564 277.0
LYD1_k127_5665170_5 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008457 261.0
LYD1_k127_5665170_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000008862 232.0
LYD1_k127_5665170_7 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.00000000000000000000000000000000000000007945 155.0
LYD1_k127_5665170_8 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.00000000000000000000000000000053 124.0
LYD1_k127_5670989_0 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 299.0
LYD1_k127_5670989_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000006289 164.0
LYD1_k127_5670989_2 transferase activity, transferring glycosyl groups K20444 - - 0.0000000000000000000001459 99.0
LYD1_k127_5670989_3 glycosyl transferase family 2 - - - 0.00000000000000000000146 104.0
LYD1_k127_5692552_0 AAA ATPase domain K12132 - 2.7.11.1 1.211e-198 660.0
LYD1_k127_5692552_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 311.0
LYD1_k127_5692552_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000004187 238.0
LYD1_k127_5692552_3 Uncharacterised conserved protein (DUF2156) K14205 - 2.3.2.3 0.00000000000000000000000000000000000000000000000000000003171 207.0
LYD1_k127_5707959_0 TonB dependent receptor - - - 0.0 1283.0
LYD1_k127_5707959_1 TonB dependent receptor - - - 4.517e-269 865.0
LYD1_k127_5707959_10 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005744 285.0
LYD1_k127_5707959_11 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000002481 254.0
LYD1_k127_5707959_12 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000005158 255.0
LYD1_k127_5707959_13 PFAM response regulator receiver K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000001994 243.0
LYD1_k127_5707959_14 - - - - 0.000000000000000000000000000000000000000000000002771 176.0
LYD1_k127_5707959_16 Septum formation initiator K05589 - - 0.00000000000000002947 84.0
LYD1_k127_5707959_17 - - - - 0.00000000602 57.0
LYD1_k127_5707959_18 Periplasmic component of the Tol biopolymer transport system - - - 0.00000001559 68.0
LYD1_k127_5707959_19 protease with the C-terminal PDZ domain - - - 0.0000005464 55.0
LYD1_k127_5707959_2 Penicillin amidase K07116 - 3.5.1.97 3.41e-224 717.0
LYD1_k127_5707959_20 - - - - 0.00004639 57.0
LYD1_k127_5707959_21 - - - - 0.0001089 49.0
LYD1_k127_5707959_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 1.462e-211 663.0
LYD1_k127_5707959_4 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 8.073e-198 624.0
LYD1_k127_5707959_5 Amidohydrolase family K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 602.0
LYD1_k127_5707959_7 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 399.0
LYD1_k127_5707959_8 protein histidine kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006934 359.0
LYD1_k127_5707959_9 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000411 349.0
LYD1_k127_5719737_0 lysine biosynthetic process via aminoadipic acid - - - 3.991e-195 629.0
LYD1_k127_5719737_1 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000003543 204.0
LYD1_k127_5719737_2 AraC-like ligand binding domain - - - 0.000000000000000000000000000000000007913 140.0
LYD1_k127_5719737_3 Belongs to the peptidase S1B family - - - 0.0000000000000000000000000000000003219 146.0
LYD1_k127_5771485_0 Bacterial sugar transferase K16557 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000003402 226.0
LYD1_k127_5771485_1 Macrocin-O-methyltransferase (TylF) - - - 0.000000000000000000000000000002578 122.0
LYD1_k127_5771485_2 Modulates the polysaccharide chain length of enterobacterial common antigen (ECA) - - - 0.000000000000000001359 94.0
LYD1_k127_5791839_0 Sortilin, neurotensin receptor 3, - - - 0.0 1268.0
LYD1_k127_5791839_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 4.346e-297 917.0
LYD1_k127_5791839_10 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000001609 243.0
LYD1_k127_5791839_11 ErfK ybiS ycfS ynhG family protein K19234 - - 0.00000000000000000000000000000000000000000000000000000000007574 213.0
LYD1_k127_5791839_12 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000003161 205.0
LYD1_k127_5791839_13 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000002599 155.0
LYD1_k127_5791839_14 - - - - 0.000000000000000000000000000005079 129.0
LYD1_k127_5791839_15 Protein of unknown function (DUF1572) - - - 0.000000000000000000000001817 109.0
LYD1_k127_5791839_2 Pyridoxal-dependent decarboxylase conserved domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004666 567.0
LYD1_k127_5791839_3 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004968 550.0
LYD1_k127_5791839_4 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 548.0
LYD1_k127_5791839_5 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 334.0
LYD1_k127_5791839_6 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 315.0
LYD1_k127_5791839_7 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001124 269.0
LYD1_k127_5791839_8 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001796 258.0
LYD1_k127_5791839_9 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000009378 241.0
LYD1_k127_5801385_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 564.0
LYD1_k127_5801385_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 466.0
LYD1_k127_5801385_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 461.0
LYD1_k127_5801385_3 Domain of unknown function (DUF4342) - - - 0.00000000000003768 75.0
LYD1_k127_580927_0 M61 glycyl aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 546.0
LYD1_k127_580927_1 membrane organization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 390.0
LYD1_k127_580927_2 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000007218 231.0
LYD1_k127_580927_3 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000001994 211.0
LYD1_k127_580927_4 - - - - 0.000000000000000000000005917 111.0
LYD1_k127_5823182_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 360.0
LYD1_k127_5823182_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001674 260.0
LYD1_k127_5823182_2 dUTPase K01494 - 3.5.4.13 0.00000000000000000000000000000000000761 137.0
LYD1_k127_5884184_0 response to heat K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 7.154e-279 870.0
LYD1_k127_5884184_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 537.0
LYD1_k127_5884184_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008121 351.0
LYD1_k127_5884184_3 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 349.0
LYD1_k127_5884184_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000001549 216.0
LYD1_k127_5884184_5 - - - - 0.0000000000000000000000000000000000000000000003546 171.0
LYD1_k127_5884184_6 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.0000000000000000000000000000000001093 135.0
LYD1_k127_5884184_7 PFAM IS1 transposase - - - 0.0000007238 51.0
LYD1_k127_5884184_8 Recombinase zinc beta ribbon domain - - - 0.000003899 48.0
LYD1_k127_5887311_0 Dehydrogenase - - - 0.0 1007.0
LYD1_k127_5887311_1 cellulose binding - - - 9.318e-288 926.0
LYD1_k127_5887311_10 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 372.0
LYD1_k127_5887311_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07104 - 1.13.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 355.0
LYD1_k127_5887311_12 Domain of unknown function (DUF4118) K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 320.0
LYD1_k127_5887311_13 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 313.0
LYD1_k127_5887311_14 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001975 269.0
LYD1_k127_5887311_15 Cysteine-rich motif following a subset of SET domains K07117 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003904 257.0
LYD1_k127_5887311_16 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009112 252.0
LYD1_k127_5887311_17 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004893 244.0
LYD1_k127_5887311_18 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.00000000000000000000000000000000000000000000005562 176.0
LYD1_k127_5887311_19 Rieske [2Fe-2S] domain - - - 0.00000000000000000000000000000000000000000001351 175.0
LYD1_k127_5887311_2 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 1.083e-243 765.0
LYD1_k127_5887311_20 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000007416 166.0
LYD1_k127_5887311_21 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000007418 149.0
LYD1_k127_5887311_22 - - - - 0.00000000000000000000000000000000001317 144.0
LYD1_k127_5887311_23 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000005659 139.0
LYD1_k127_5887311_24 - - - - 0.000000000000000000000000000000003182 135.0
LYD1_k127_5887311_26 Domain of unknown function (DUF4142) K08995 - - 0.000000000000000000002459 102.0
LYD1_k127_5887311_27 PspC domain - - - 0.00000000000002454 78.0
LYD1_k127_5887311_28 haloacid dehalogenase-like hydrolase - - - 0.0001133 50.0
LYD1_k127_5887311_29 Aldo Keto reductase - - - 0.0006407 49.0
LYD1_k127_5887311_3 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 576.0
LYD1_k127_5887311_4 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 564.0
LYD1_k127_5887311_5 Multicopper oxidase K22348 - 1.16.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008009 449.0
LYD1_k127_5887311_6 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 415.0
LYD1_k127_5887311_7 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003451 411.0
LYD1_k127_5887311_8 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 385.0
LYD1_k127_5887311_9 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007945 380.0
LYD1_k127_5936270_0 Enoyl-CoA hydratase/isomerase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 8.442e-268 842.0
LYD1_k127_5936270_1 Zn_pept - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 539.0
LYD1_k127_5936270_10 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.000000004588 57.0
LYD1_k127_5936270_2 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 455.0
LYD1_k127_5936270_3 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007175 436.0
LYD1_k127_5936270_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 370.0
LYD1_k127_5936270_5 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000003904 183.0
LYD1_k127_5936270_6 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000001218 149.0
LYD1_k127_5936270_7 - - - - 0.0000000000000000000000000002309 120.0
LYD1_k127_5936270_8 - - - - 0.00000000000000000000004112 102.0
LYD1_k127_5936270_9 Ferredoxin - - - 0.00000000000000005213 91.0
LYD1_k127_593676_0 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000001616 203.0
LYD1_k127_593676_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000104 171.0
LYD1_k127_593676_2 transferase activity, transferring glycosyl groups K00786 - - 0.000000000000000000002916 106.0
LYD1_k127_593676_3 Oxidoreductase family, C-terminal alpha/beta domain - GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016491,GO:0019362,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:1901360,GO:1901564 - 0.0001153 52.0
LYD1_k127_593676_4 methyltransferase - - - 0.0004975 47.0
LYD1_k127_5962832_0 B3/4 domain K01890 - 6.1.1.20 1.124e-242 779.0
LYD1_k127_5962832_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 556.0
LYD1_k127_5962832_10 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005826 260.0
LYD1_k127_5962832_11 STAS domain K04749 - - 0.000000000000000000000000000000000000000000000000000009485 190.0
LYD1_k127_5962832_12 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000000000009232 188.0
LYD1_k127_5962832_13 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.0000000000000000000000000000000000000000001952 164.0
LYD1_k127_5962832_14 Ribosomal protein L35 K02916 - - 0.0000000000000000002762 88.0
LYD1_k127_5962832_15 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000007388 81.0
LYD1_k127_5962832_2 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 470.0
LYD1_k127_5962832_3 Aminoacyl tRNA synthetase class II, N-terminal domain K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 461.0
LYD1_k127_5962832_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006227 446.0
LYD1_k127_5962832_5 Phosphate acetyl/butaryl transferase K00625 - 2.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 301.0
LYD1_k127_5962832_6 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000935 286.0
LYD1_k127_5962832_7 EXOIII K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002726 276.0
LYD1_k127_5962832_8 Arginine deiminase K01478 - 3.5.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000001469 277.0
LYD1_k127_5962832_9 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002287 264.0
LYD1_k127_5976949_0 Prolyl oligopeptidase - - - 3.891e-229 733.0
LYD1_k127_5976949_1 von Willebrand factor (vWF) type A domain - - - 1.964e-221 697.0
LYD1_k127_5976949_10 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000004873 106.0
LYD1_k127_5976949_11 protein, homolog of Cu resistance protein CopC K14166 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000001163 113.0
LYD1_k127_5976949_2 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 1.057e-220 691.0
LYD1_k127_5976949_3 Aminotransferase class-V - - - 7.611e-196 620.0
LYD1_k127_5976949_4 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 606.0
LYD1_k127_5976949_5 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 393.0
LYD1_k127_5976949_6 EVE domain - - - 0.000000000000000000000000000000000000000000000000000000000000001418 226.0
LYD1_k127_5976949_7 Galactokinase galactose-binding signature K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000000000000000688 231.0
LYD1_k127_5976949_8 YGGT family K02221 - - 0.0000000000000000000000000000000000000000000000007115 181.0
LYD1_k127_5976949_9 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000336 113.0
LYD1_k127_5982029_0 PFAM ABC transporter transmembrane K06147 - - 1.6e-256 800.0
LYD1_k127_5982029_1 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000001733 157.0
LYD1_k127_5982029_2 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000004157 157.0
LYD1_k127_5982029_3 Outer membrane efflux protein - - - 0.000005234 54.0
LYD1_k127_5983421_0 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 9.638e-269 836.0
LYD1_k127_5983421_1 Male sterility protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 527.0
LYD1_k127_6038459_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 2.793e-294 912.0
LYD1_k127_6038459_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 9.445e-209 660.0
LYD1_k127_6038459_10 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000000000000000001876 168.0
LYD1_k127_6038459_11 Glycosyl transferase, family 2 K00786 - - 0.0000000000000000000000000000000003599 143.0
LYD1_k127_6038459_12 Tetratricopeptide repeat-like domain - - - 0.000000000000000000000000000004101 128.0
LYD1_k127_6038459_13 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000002747 84.0
LYD1_k127_6038459_14 Bacterial membrane protein YfhO - - - 0.00001036 48.0
LYD1_k127_6038459_2 Protein of unknown function (DUF512) - - - 4.604e-204 642.0
LYD1_k127_6038459_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 406.0
LYD1_k127_6038459_4 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 379.0
LYD1_k127_6038459_5 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 392.0
LYD1_k127_6038459_6 MviN-like protein K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 311.0
LYD1_k127_6038459_7 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001899 280.0
LYD1_k127_6038459_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000228 218.0
LYD1_k127_6038459_9 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000001602 203.0
LYD1_k127_6063186_0 Carbamoyltransferase C-terminus K00612 - - 3.161e-294 913.0
LYD1_k127_6063186_1 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 427.0
LYD1_k127_6063186_2 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007383 346.0
LYD1_k127_6063186_3 histidine-tRNA ligase activity K01892,K02502 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000001499 226.0
LYD1_k127_6063186_4 Fumarylacetoacetase N-terminal K01555 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000008156 219.0
LYD1_k127_6063186_5 Copper/zinc superoxide dismutase (SODC) K04565 - 1.15.1.1 0.000000000000000000000000000000000000000000006246 176.0
LYD1_k127_6063186_6 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00000000000000000000000000001374 128.0
LYD1_k127_6063186_7 - - - - 0.0000000000000000000000008546 109.0
LYD1_k127_6063186_8 - - - - 0.000000000000000001016 86.0
LYD1_k127_6071843_0 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 379.0
LYD1_k127_6071843_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000001124 217.0
LYD1_k127_6071843_2 Sodium/calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000000000000000961 199.0
LYD1_k127_6071843_3 phosphatase homologous to the C-terminal domain of histone macroH2A1 - GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0008150,GO:0008428,GO:0009892,GO:0010605,GO:0016787,GO:0019213,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0032069,GO:0032074,GO:0043086,GO:0043900,GO:0044092,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060698,GO:0060699,GO:0060700,GO:0060701,GO:0060702,GO:0061463,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1900190,GO:1900231 - 0.00000000000000000000000000000000000000000000000004759 182.0
LYD1_k127_6071843_4 - - - - 0.000000000000000000000000000003263 129.0
LYD1_k127_6071843_5 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000001315 121.0
LYD1_k127_6071843_6 SnoaL-like polyketide cyclase - - - 0.000004771 55.0
LYD1_k127_6085364_1 - - - - 0.0000000000000000002364 94.0
LYD1_k127_6085364_3 cysteine-type peptidase activity - - - 0.00000003599 65.0
LYD1_k127_6085364_4 aldo keto reductase - - - 0.0002263 45.0
LYD1_k127_6104712_0 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.0 1332.0
LYD1_k127_6104712_1 ABC-type multidrug transport system ATPase and permease K06147,K06148,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 406.0
LYD1_k127_6104712_2 Uncharacterised nucleotidyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000344 212.0
LYD1_k127_6104712_3 Transglutaminase-like superfamily - - - 0.00000000001837 71.0
LYD1_k127_6124460_0 PFAM Amidase - - - 1.767e-194 624.0
LYD1_k127_6124460_1 Isocitrate isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 556.0
LYD1_k127_6124460_2 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 514.0
LYD1_k127_6124460_3 collagen metabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 378.0
LYD1_k127_6128934_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1335.0
LYD1_k127_6128934_1 WD40-like Beta Propeller Repeat - - - 1.969e-264 857.0
LYD1_k127_6128934_2 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 357.0
LYD1_k127_6128934_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000005253 251.0
LYD1_k127_6128934_4 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000002709 254.0
LYD1_k127_6128934_5 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000002394 212.0
LYD1_k127_6128934_6 RES - - - 0.00000000000000000000000000000000000000000000000000009862 192.0
LYD1_k127_6128934_7 Protein of unknown function (DUF2384) - - - 0.000000000000000000000000000000000000003606 151.0
LYD1_k127_6128934_8 PFAM Major Facilitator Superfamily K08218 - - 0.00000000000000000000000000000007551 128.0
LYD1_k127_6140509_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 3.042e-286 891.0
LYD1_k127_6140509_1 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 2.537e-282 898.0
LYD1_k127_6140509_10 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000000000000000000000000000000000000000000000009813 183.0
LYD1_k127_6140509_11 OmpA family K03640 - - 0.00000000000000000000000000001453 128.0
LYD1_k127_6140509_12 Outer membrane lipoprotein - - - 0.000000000198 71.0
LYD1_k127_6140509_2 Aromatic amino acid lyase K01745 - 4.3.1.3 3.155e-221 696.0
LYD1_k127_6140509_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 524.0
LYD1_k127_6140509_4 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000314 516.0
LYD1_k127_6140509_5 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 397.0
LYD1_k127_6140509_6 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006981 316.0
LYD1_k127_6140509_7 MotA/TolQ/ExbB proton channel family K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000398 284.0
LYD1_k127_6140509_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001525 277.0
LYD1_k127_6140509_9 TonB C terminal K03832 - - 0.0000000000000000000000000000000000000000000000000000004045 202.0
LYD1_k127_6144078_0 Insulinase (Peptidase family M16) K07263 - - 2.054e-313 984.0
LYD1_k127_6144078_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 452.0
LYD1_k127_6144078_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.000000000000000000000000000000003274 137.0
LYD1_k127_6144078_3 Serine aminopeptidase, S33 - - - 0.000000000000000000000002585 104.0
LYD1_k127_6144078_4 - - - - 0.000000000000000000000004082 104.0
LYD1_k127_6154836_0 PFAM transposase IS116 IS110 IS902 family K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 331.0
LYD1_k127_6154836_1 similarity to GB AAN56270.1 - - - 0.000000000349 65.0
LYD1_k127_6155173_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 2.523e-295 930.0
LYD1_k127_6155173_1 adenylyltransferase, small subunit K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 503.0
LYD1_k127_6155173_2 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 297.0
LYD1_k127_6155173_3 Belongs to the 'phage' integrase family - - - 0.000000000000000000000003131 105.0
LYD1_k127_6155173_4 Protein conserved in bacteria K20444 - - 0.0000000000004942 73.0
LYD1_k127_6155173_5 ubiE/COQ5 methyltransferase family - - - 0.000000000002257 75.0
LYD1_k127_6155173_6 ubiE/COQ5 methyltransferase family - - - 0.000000000002866 66.0
LYD1_k127_6155173_7 ubiE/COQ5 methyltransferase family - - - 0.00000000001618 68.0
LYD1_k127_6155173_8 PFAM Integrase, catalytic core, phage - - - 0.00000000002955 69.0
LYD1_k127_6183654_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 4.238e-219 689.0
LYD1_k127_6183654_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 500.0
LYD1_k127_6183654_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007293 497.0
LYD1_k127_6183654_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001569 277.0
LYD1_k127_6183654_4 Pyridoxamine 5'-phosphate oxidase K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000000005744 233.0
LYD1_k127_6183654_5 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000009595 193.0
LYD1_k127_6183654_6 Oxidoreductase molybdopterin binding domain - - - 0.00000000000000000000000001395 109.0
LYD1_k127_6197426_0 N-Acetylmuramoyl-L-alanine amidase K01187 - 3.2.1.20 4.43e-278 872.0
LYD1_k127_6197426_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183,K11189 - 2.7.1.202,2.7.3.9 3.21e-277 875.0
LYD1_k127_6197426_2 hydrolase activity, hydrolyzing O-glycosyl compounds K01176 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.2.1.1 0.0000000000000000000000000000000000000000000000000001316 191.0
LYD1_k127_6197426_3 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity K02778,K02779,K20116,K20117,K20118 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0009401,GO:0015144,GO:0015749,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034219,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563,GO:0090564,GO:1904659 2.7.1.199 0.000000000000000000000000000000000000000000000004518 175.0
LYD1_k127_6198819_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.058e-311 965.0
LYD1_k127_6198819_1 peptidase K01415,K07386 - 3.4.24.71 2.069e-224 716.0
LYD1_k127_6198819_10 ApaG domain K06195 - - 0.0000000000000000000000000000000000000000000000000002125 189.0
LYD1_k127_6198819_11 lytic transglycosylase activity K08309 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009274,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000004784 167.0
LYD1_k127_6198819_12 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000008838 103.0
LYD1_k127_6198819_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 516.0
LYD1_k127_6198819_3 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 393.0
LYD1_k127_6198819_4 Fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 339.0
LYD1_k127_6198819_5 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 300.0
LYD1_k127_6198819_6 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000001508 265.0
LYD1_k127_6198819_7 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.00000000000000000000000000000000000000000000000000000002905 201.0
LYD1_k127_6198819_8 Putative cyclase K07130 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000000001635 202.0
LYD1_k127_6198819_9 phosphatase activity K07025 - - 0.000000000000000000000000000000000000000000000000000009919 196.0
LYD1_k127_6211823_0 Threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 425.0
LYD1_k127_6211823_1 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000003952 244.0
LYD1_k127_6211823_2 RibD C-terminal domain - - - 0.00000000000000000000000000000000000000000000001607 176.0
LYD1_k127_6211823_3 Redoxin - - - 0.00000000000000000000000000185 119.0
LYD1_k127_6213485_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0 1190.0
LYD1_k127_6213485_1 Highly conserved protein containing a thioredoxin domain K06888 - - 3.107e-251 793.0
LYD1_k127_6213485_10 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 361.0
LYD1_k127_6213485_11 Branched-chain amino acid transport system / permease component K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 308.0
LYD1_k127_6213485_12 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000007397 228.0
LYD1_k127_6213485_13 Domain of unknown function (DUF4173) - - - 0.00000000000000000000000000002062 134.0
LYD1_k127_6213485_14 NUDIX domain - - - 0.0000000000000000000000002526 110.0
LYD1_k127_6213485_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.27e-240 751.0
LYD1_k127_6213485_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 2.05e-222 705.0
LYD1_k127_6213485_4 Peptidase dimerisation domain - - - 2.337e-210 662.0
LYD1_k127_6213485_5 ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 614.0
LYD1_k127_6213485_6 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 596.0
LYD1_k127_6213485_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 511.0
LYD1_k127_6213485_8 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 509.0
LYD1_k127_6213485_9 Branched-chain amino acid transport system / permease component K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004765 479.0
LYD1_k127_6236204_0 Peptidase M14, carboxypeptidase A - - - 6.544e-300 935.0
LYD1_k127_6236204_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 390.0
LYD1_k127_6236204_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000116 103.0
LYD1_k127_6239621_0 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 8.051e-250 782.0
LYD1_k127_6239621_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.134e-245 772.0
LYD1_k127_6239621_2 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 559.0
LYD1_k127_6239621_3 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 518.0
LYD1_k127_6239621_4 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003676 273.0
LYD1_k127_6239621_6 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000001913 99.0
LYD1_k127_6239621_7 Regulatory protein, FmdB family - - - 0.0000000000000002087 84.0
LYD1_k127_6271921_0 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000009927 228.0
LYD1_k127_6271921_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000004992 184.0
LYD1_k127_6271921_2 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000002533 89.0
LYD1_k127_6272928_0 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 2.694e-315 981.0
LYD1_k127_6272928_1 Putative modulator of DNA gyrase K03568 - - 3.227e-249 780.0
LYD1_k127_6272928_2 Putative modulator of DNA gyrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 605.0
LYD1_k127_6272928_3 Putative methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000002631 221.0
LYD1_k127_6272928_4 Copper binding proteins, plastocyanin/azurin family - - - 0.000000007071 57.0
LYD1_k127_6284517_0 Zinc carboxypeptidase K14054 - - 0.0 1176.0
LYD1_k127_6284517_1 Domain of unknown function (DUF5117) - - - 0.0 1039.0
LYD1_k127_6284517_10 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 364.0
LYD1_k127_6284517_11 Amino acid permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 365.0
LYD1_k127_6284517_12 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 344.0
LYD1_k127_6284517_13 Domain of unknown function (DUF4403) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 339.0
LYD1_k127_6284517_14 PFAM Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 318.0
LYD1_k127_6284517_15 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 304.0
LYD1_k127_6284517_16 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 313.0
LYD1_k127_6284517_17 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002474 254.0
LYD1_k127_6284517_18 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009233 249.0
LYD1_k127_6284517_19 HEAT repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000002185 232.0
LYD1_k127_6284517_2 secondary active sulfate transmembrane transporter activity - - - 2.442e-284 892.0
LYD1_k127_6284517_20 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000001245 219.0
LYD1_k127_6284517_21 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000003722 199.0
LYD1_k127_6284517_22 lysyltransferase activity K07027 - - 0.000000000000000000000000000000000000000000000000000005528 202.0
LYD1_k127_6284517_23 PFAM phospholipase Carboxylesterase - - - 0.0000000000000000000000000000000000000000000000004858 183.0
LYD1_k127_6284517_24 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000002335 186.0
LYD1_k127_6284517_25 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000004387 174.0
LYD1_k127_6284517_26 translation initiation inhibitor, yjgF family K04782 - 4.2.99.21 0.000000000000000000000000000000000000000000001026 171.0
LYD1_k127_6284517_27 HEAT repeats - - - 0.000000000000000000000000000000000000004059 159.0
LYD1_k127_6284517_28 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000001356 134.0
LYD1_k127_6284517_29 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000006386 125.0
LYD1_k127_6284517_3 Transporter associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004119 586.0
LYD1_k127_6284517_30 - - - - 0.00000000000000000000002172 110.0
LYD1_k127_6284517_31 - - - - 0.000000000000005526 79.0
LYD1_k127_6284517_32 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000001753 87.0
LYD1_k127_6284517_4 ABC transporter transmembrane region K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 536.0
LYD1_k127_6284517_5 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007866 443.0
LYD1_k127_6284517_6 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 433.0
LYD1_k127_6284517_7 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 426.0
LYD1_k127_6284517_8 HEAT repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 399.0
LYD1_k127_6284517_9 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 381.0
LYD1_k127_6301321_0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 5.915e-254 808.0
LYD1_k127_6301321_1 CarboxypepD_reg-like domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 561.0
LYD1_k127_6301321_2 COGs COG4299 conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007114 498.0
LYD1_k127_6301321_3 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 501.0
LYD1_k127_6301321_4 Glycosyl hydrolase family 3 C-terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 445.0
LYD1_k127_6301321_5 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 412.0
LYD1_k127_6301321_6 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 301.0
LYD1_k127_6301321_7 Uncharacterised protein family (UPF0182) K09118 - - 0.00000000000000000000000000000000000000000000000000000000000000176 225.0
LYD1_k127_6301321_8 PFAM S23 ribosomal protein - - - 0.0000001937 58.0
LYD1_k127_6328704_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 343.0
LYD1_k127_6328704_1 Metallopeptidase family M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001075 260.0
LYD1_k127_6328704_2 - - - - 0.000000000000000000000000000000000000000000000000000001339 198.0
LYD1_k127_6328704_3 Integral membrane protein DUF92 - - - 0.000000000000000000000000000000000000000000000000000002585 202.0
LYD1_k127_6328704_4 Glucose inhibited division protein A K21401 - 1.3.99.38 0.0000418 49.0
LYD1_k127_6329116_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 2.171e-256 806.0
LYD1_k127_6329116_1 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 357.0
LYD1_k127_6329116_2 - - - - 0.000000000005956 71.0
LYD1_k127_6366857_0 Protein kinase domain K12132 - 2.7.11.1 1.768e-208 677.0
LYD1_k127_6366857_1 Involved in the tonB-independent uptake of proteins K03641,K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 357.0
LYD1_k127_6384071_0 siderophore transport K02014 - - 3.723e-226 722.0
LYD1_k127_6384071_1 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 489.0
LYD1_k127_6384071_2 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 458.0
LYD1_k127_6384071_3 Glycine betaine K05845 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005092 350.0
LYD1_k127_6384071_4 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 301.0
LYD1_k127_6384071_5 ABC transporter K05847 GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0031460,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0072337 - 0.0000000000000000000000000000000000000000000000000000000000000000004539 237.0
LYD1_k127_6384071_6 Major Facilitator Superfamily - - - 0.00000000116 61.0
LYD1_k127_6384071_7 Putative glucoamylase - - - 0.0000003716 51.0
LYD1_k127_6384373_0 CoA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 619.0
LYD1_k127_6384373_1 MBOAT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 544.0
LYD1_k127_6384373_10 Aldo/keto reductase family - - - 0.000000000000003334 86.0
LYD1_k127_6384373_11 Transcriptional regulator - - - 0.0001462 53.0
LYD1_k127_6384373_2 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 530.0
LYD1_k127_6384373_3 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009195 389.0
LYD1_k127_6384373_4 Wzt C-terminal domain K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 361.0
LYD1_k127_6384373_5 ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001655 287.0
LYD1_k127_6384373_6 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001032 281.0
LYD1_k127_6384373_7 - - - - 0.0000000000000000000000000000000000007502 153.0
LYD1_k127_6384373_8 Methyltransferase domain - - - 0.000000000000000000000000000000000004197 147.0
LYD1_k127_6384373_9 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase K07257 - - 0.0000000000000009577 84.0
LYD1_k127_6444707_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.457e-312 964.0
LYD1_k127_6444707_1 Anthranilate synthase component I, N terminal region K01657 - 4.1.3.27 2.626e-206 654.0
LYD1_k127_6444707_10 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000000000000001217 214.0
LYD1_k127_6444707_11 Lipopolysaccharide kinase (Kdo/WaaP) family K11211 - 2.7.1.166 0.0000000000000000000000000000000000000002159 160.0
LYD1_k127_6444707_2 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 3.764e-202 640.0
LYD1_k127_6444707_3 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 1.017e-197 623.0
LYD1_k127_6444707_4 - - - - 2.316e-194 628.0
LYD1_k127_6444707_5 Glycosyltransferase family 9 (heptosyltransferase) K12982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005793 429.0
LYD1_k127_6444707_6 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 409.0
LYD1_k127_6444707_7 GIY-YIG type nucleases (URI domain) K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 370.0
LYD1_k127_6444707_8 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 327.0
LYD1_k127_6444707_9 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000000000004876 236.0
LYD1_k127_6479627_0 Allophanate hydrolase, subunit 1 - - - 0.00000000000000000000000000000000000000000000000000001435 196.0
LYD1_k127_6479627_1 Allophanate hydrolase subunit 2 K06350 - - 0.0000000000000000000000000000000000000000000000000008476 197.0
LYD1_k127_6479627_2 domain protein K13735 - - 0.0000000000000000000000006712 119.0
LYD1_k127_6479627_3 LamB/YcsF family K07160 - - 0.00000000000000000003317 92.0
LYD1_k127_6492823_0 TIGRFAM competence damage-inducible protein CinA K03742,K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000002275 253.0
LYD1_k127_6492823_1 hmm pf01609 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007526 258.0
LYD1_k127_6492823_2 Peptidase family M50 K11749 - - 0.00000000000000000000008456 101.0
LYD1_k127_6533006_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000008205 224.0
LYD1_k127_6533006_1 NmrA-like family K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000001827 180.0
LYD1_k127_6533006_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000004749 170.0
LYD1_k127_6533006_3 Glycosyltransferase like family 2 - - - 0.00000001304 59.0
LYD1_k127_6559590_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 3.146e-194 617.0
LYD1_k127_6559590_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000001844 252.0
LYD1_k127_6559590_2 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000005208 228.0
LYD1_k127_6582079_0 benzoyl-CoA reductase K04113 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 602.0
LYD1_k127_6582079_1 BadF/BadG/BcrA/BcrD ATPase family K04114 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 469.0
LYD1_k127_6582079_2 benzoyl-CoA reductase K04112 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 425.0
LYD1_k127_6582079_3 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000699 206.0
LYD1_k127_6582079_4 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.00000000000000000000000000000000002346 145.0
LYD1_k127_6582079_5 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000001957 124.0
LYD1_k127_6582079_6 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.00000000000000000000000001088 122.0
LYD1_k127_662706_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 377.0
LYD1_k127_662706_1 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008247 325.0
LYD1_k127_6628710_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 560.0
LYD1_k127_6628710_1 Aminotransferase class-V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 553.0
LYD1_k127_6628710_10 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 348.0
LYD1_k127_6628710_11 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 300.0
LYD1_k127_6628710_12 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003058 273.0
LYD1_k127_6628710_13 Roadblock/LC7 domain - - - 0.00000000000000000000000000000000000000000000000000000000004022 213.0
LYD1_k127_6628710_14 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000000000001473 174.0
LYD1_k127_6628710_15 Peptidase family M23 K21472 - - 0.00000000000000000000000000000000000000000001019 171.0
LYD1_k127_6628710_16 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000003259 111.0
LYD1_k127_6628710_17 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00001405 48.0
LYD1_k127_6628710_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009135 539.0
LYD1_k127_6628710_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006449 522.0
LYD1_k127_6628710_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 519.0
LYD1_k127_6628710_5 Competence-damaged protein K03742 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 501.0
LYD1_k127_6628710_6 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 481.0
LYD1_k127_6628710_7 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 469.0
LYD1_k127_6628710_8 ADP-ribosylation factor family K06883 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 392.0
LYD1_k127_6628710_9 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 370.0
LYD1_k127_6644403_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 456.0
LYD1_k127_6644403_1 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 451.0
LYD1_k127_6644403_2 PFAM Glycosyltransferase family 28 C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007422 409.0
LYD1_k127_6644403_3 ABC-type multidrug transport system ATPase and permease K06147 - - 0.0000000000000000000000008886 111.0
LYD1_k127_6671504_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 3.418e-236 739.0
LYD1_k127_6671504_1 Aminotransferase class-III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 561.0
LYD1_k127_6671504_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 473.0
LYD1_k127_6671504_3 Dihydroorotate dehydrogenase K17723 GO:0003674,GO:0003824,GO:0003954,GO:0006139,GO:0006206,GO:0006208,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0016491,GO:0016651,GO:0034641,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 1.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 395.0
LYD1_k127_6671504_4 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005377 276.0
LYD1_k127_6671504_5 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01464 - 3.5.2.2 0.000000000000000000000000000000000000000000000000000000000000000002627 237.0
LYD1_k127_6671504_6 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000006706 210.0
LYD1_k127_6671504_7 Polymer-forming cytoskeletal - - - 0.00000000000000000001573 99.0
LYD1_k127_6671504_8 PFAM nitrogen-fixing NifU domain protein - - - 0.0000004209 55.0
LYD1_k127_6671981_0 protein histidine kinase activity K03407,K12257 - 2.7.13.3 0.0 2355.0
LYD1_k127_6671981_1 RecQ zinc-binding K03654 - 3.6.4.12 1.839e-227 719.0
LYD1_k127_6671981_10 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 359.0
LYD1_k127_6671981_11 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 353.0
LYD1_k127_6671981_12 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005339 339.0
LYD1_k127_6671981_13 chaperone-mediated protein folding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 334.0
LYD1_k127_6671981_14 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000005388 245.0
LYD1_k127_6671981_15 transcriptional regulator K09017 - - 0.000000000000000000000000000000000000000000000000000000000000000006098 231.0
LYD1_k127_6671981_16 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.0000000000000000000000000000000000000000000000000000000000005162 223.0
LYD1_k127_6671981_17 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000006004 229.0
LYD1_k127_6671981_18 protein-glutamate methylesterase activity K03412,K03413 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000002068 200.0
LYD1_k127_6671981_19 Fe-S metabolism associated domain K02426 - - 0.000000000000000000000000000000000000000000000000000001309 196.0
LYD1_k127_6671981_2 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 581.0
LYD1_k127_6671981_20 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000003961 187.0
LYD1_k127_6671981_21 MOSC domain - - - 0.0000000000000000000000000000000000000000000000003764 184.0
LYD1_k127_6671981_22 - - - - 0.00000000000000000000000000000000000000000004883 166.0
LYD1_k127_6671981_23 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.000000000000000000000000000000000000002364 149.0
LYD1_k127_6671981_24 peroxiredoxin, OsmC subfamily K04063 - - 0.000000000000000000000000000000000001329 144.0
LYD1_k127_6671981_25 - - - - 0.00000000000000000000000313 107.0
LYD1_k127_6671981_3 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 538.0
LYD1_k127_6671981_4 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 504.0
LYD1_k127_6671981_5 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 427.0
LYD1_k127_6671981_6 Putative RNA methylase family UPF0020 K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 402.0
LYD1_k127_6671981_7 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 387.0
LYD1_k127_6671981_8 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 382.0
LYD1_k127_6671981_9 PFAM ABC transporter related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004759 376.0
LYD1_k127_6685053_0 Type ii secretion system protein e K02283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000606 314.0
LYD1_k127_6685053_1 Type ii secretion system K12510 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005039 269.0
LYD1_k127_6758690_0 Sortilin, neurotensin receptor 3, - - - 0.0 1215.0
LYD1_k127_6758690_1 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000001101 214.0
LYD1_k127_6758690_2 Domain of unknown function (DUF4386) - - - 0.000000000000000000000000000000000000000000000000000000244 204.0
LYD1_k127_6758690_3 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000007914 186.0
LYD1_k127_6758690_4 impB/mucB/samB family K14161 - - 0.000000000000000000008882 107.0
LYD1_k127_6758690_5 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553,K14160 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360 - 0.0001915 51.0
LYD1_k127_6778600_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 329.0
LYD1_k127_6778600_1 TipAS antibiotic-recognition domain - - - 0.0000000000000000000000000000008348 124.0
LYD1_k127_6778600_2 YMGG-like Gly-zipper - - - 0.00000245 56.0
LYD1_k127_6804236_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.0 1036.0
LYD1_k127_6804236_1 alginic acid biosynthetic process - - - 1.857e-236 756.0
LYD1_k127_6804236_2 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 508.0
LYD1_k127_6804236_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 434.0
LYD1_k127_6804236_4 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000001266 238.0
LYD1_k127_6804236_5 SprT-like family - - - 0.000000000000000000000000000000001045 135.0
LYD1_k127_6804236_6 - - - - 0.000000000000000000001319 98.0
LYD1_k127_700188_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 458.0
LYD1_k127_713480_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 1.222e-240 750.0
LYD1_k127_713480_1 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 6.578e-205 647.0
LYD1_k127_713480_2 4Fe-4S binding domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 561.0
LYD1_k127_713480_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 427.0
LYD1_k127_713480_4 Glycine cleavage T-protein C-terminal barrel domain K06980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 306.0
LYD1_k127_713480_5 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006252 286.0
LYD1_k127_713480_6 Diacylglycerol kinase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000416 241.0
LYD1_k127_713480_7 Cytidylate kinase-like family - - - 0.000000000001748 75.0
LYD1_k127_737972_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.826e-224 702.0
LYD1_k127_737972_1 Formiminotransferase domain, N-terminal subdomain K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 569.0
LYD1_k127_737972_10 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000001293 228.0
LYD1_k127_737972_11 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000000001617 219.0
LYD1_k127_737972_12 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000000000000000001488 218.0
LYD1_k127_737972_13 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000000000001353 183.0
LYD1_k127_737972_14 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000009215 165.0
LYD1_k127_737972_16 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000000000008864 134.0
LYD1_k127_737972_17 Ribosomal protein L30p/L7e K02907 - - 0.00000000000000000000000000201 113.0
LYD1_k127_737972_18 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000003287 99.0
LYD1_k127_737972_19 Ribosomal L29 protein K02904 - - 0.0000000000001284 74.0
LYD1_k127_737972_2 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007833 504.0
LYD1_k127_737972_3 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 371.0
LYD1_k127_737972_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006182 342.0
LYD1_k127_737972_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 308.0
LYD1_k127_737972_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 280.0
LYD1_k127_737972_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006388 277.0
LYD1_k127_737972_8 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000001884 237.0
LYD1_k127_737972_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000000000000000000027 227.0
LYD1_k127_781356_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 605.0
LYD1_k127_781356_1 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 593.0
LYD1_k127_781356_10 - - - - 0.00000000000000000000000000000000000000000000000000000001009 209.0
LYD1_k127_781356_11 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000008978 184.0
LYD1_k127_781356_12 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.0000000000000000000000000000000000000000000005614 178.0
LYD1_k127_781356_13 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000006691 138.0
LYD1_k127_781356_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 554.0
LYD1_k127_781356_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 507.0
LYD1_k127_781356_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 392.0
LYD1_k127_781356_5 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 302.0
LYD1_k127_781356_6 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002694 286.0
LYD1_k127_781356_7 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001034 284.0
LYD1_k127_781356_8 PFAM metal-dependent phosphohydrolase, HD sub domain K02030,K06950,K07814,K09749,K16923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001043 266.0
LYD1_k127_781356_9 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000003569 242.0
LYD1_k127_806959_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 439.0
LYD1_k127_806959_1 PAS domain K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000643 295.0
LYD1_k127_806959_2 Domain of unknown function (DUF1736) - - - 0.00000000000000000000000000001251 136.0
LYD1_k127_806959_3 Prokaryotic N-terminal methylation motif - - - 0.00000000000000001258 86.0
LYD1_k127_853117_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 617.0
LYD1_k127_853117_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000101 284.0
LYD1_k127_853117_10 SCO1 SenC K07152 - - 0.00000000000004796 83.0
LYD1_k127_853117_11 aminopeptidase N - - - 0.00000261 58.0
LYD1_k127_853117_12 - - - - 0.0002045 45.0
LYD1_k127_853117_2 WHG domain - - - 0.000000000000000000000000000000000000000000000000000000000000003024 222.0
LYD1_k127_853117_3 SMART PDZ DHR GLGF domain protein - - - 0.0000000000000000000000000000000000000000000000000000000003384 224.0
LYD1_k127_853117_4 cytochrome c oxidase (Subunit II) - - - 0.00000000000000000000000000000000000000000000000000000009924 201.0
LYD1_k127_853117_5 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000009432 193.0
LYD1_k127_853117_6 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000002705 163.0
LYD1_k127_853117_7 Dienelactone hydrolase family - - - 0.00000000000000000000001916 113.0
LYD1_k127_853117_8 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000003934 100.0
LYD1_k127_855207_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1306.0
LYD1_k127_855207_1 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007779 594.0
LYD1_k127_855207_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 379.0
LYD1_k127_855207_3 CutA1 divalent ion tolerance protein K03926 - - 0.0000000000000000000000000000000000000426 146.0
LYD1_k127_861788_0 SAF K01654 - 2.5.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006 413.0
LYD1_k127_861788_1 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000118 273.0
LYD1_k127_861788_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000001215 171.0
LYD1_k127_873262_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 2.627e-283 891.0
LYD1_k127_873262_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 545.0
LYD1_k127_873262_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006023 526.0
LYD1_k127_873262_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 312.0
LYD1_k127_873262_4 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000002675 220.0
LYD1_k127_873262_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000773 166.0
LYD1_k127_873262_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000008355 133.0
LYD1_k127_883579_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000000000002794 218.0
LYD1_k127_883579_1 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000003126 108.0
LYD1_k127_883579_2 PFAM Peptidoglycan-binding LysM - - - 0.0000000000002571 80.0
LYD1_k127_930322_0 Uncharacterized protein family (UPF0051) K09014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 482.0
LYD1_k127_930322_1 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004572 421.0
LYD1_k127_930322_2 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000784 403.0
LYD1_k127_930322_3 Peptidase S46 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 417.0
LYD1_k127_938446_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 574.0
LYD1_k127_938446_1 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 493.0
LYD1_k127_938446_2 AMP-binding enzyme C-terminal domain K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 386.0
LYD1_k127_938446_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 326.0
LYD1_k127_938446_4 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 0.000000000000000000000000000000000000000000000000000000001617 201.0
LYD1_k127_938446_5 ABC transporter transmembrane region K18890 - - 0.0000000000000000000001148 98.0
LYD1_k127_938446_6 - - - - 0.00000000000006646 73.0
LYD1_k127_965483_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004847 581.0
LYD1_k127_965483_1 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 576.0
LYD1_k127_965483_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 546.0
LYD1_k127_965483_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 542.0
LYD1_k127_965483_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 516.0
LYD1_k127_965483_5 Cell cycle protein K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006751 466.0
LYD1_k127_965483_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 386.0
LYD1_k127_965483_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000006618 145.0
LYD1_k127_967835_0 iron-nicotianamine transmembrane transporter activity - - - 4.2e-272 859.0
LYD1_k127_967835_1 ABC transporter K06020 - 3.6.3.25 8.967e-254 794.0
LYD1_k127_967835_10 1,4-alpha-glucan branching enzyme activity K00700 - 2.4.1.18 0.0000000000000000001117 98.0
LYD1_k127_967835_11 - - - - 0.000004907 58.0
LYD1_k127_967835_2 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005397 334.0
LYD1_k127_967835_3 TIGRFAM MazG family protein K02428,K02499 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000911 228.0
LYD1_k127_967835_4 PFAM Papain family cysteine protease - - - 0.0000000000000000000000000000000000000000000000000000000000001528 223.0
LYD1_k127_967835_5 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000000009328 201.0
LYD1_k127_967835_6 Tetrapyrrole (Corrin/Porphyrin) Methylases - - - 0.00000000000000000000000000000000000000000000000000003338 200.0
LYD1_k127_967835_7 - - - - 0.00000000000000000000000000000000000000000000000000009684 202.0
LYD1_k127_967835_8 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008360,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0040007,GO:0042304,GO:0043085,GO:0043086,GO:0043170,GO:0043388,GO:0043412,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051055,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.000000000000000000000000000000000000000000001136 191.0
LYD1_k127_967835_9 - - - - 0.00000000000000000000000000000000000000000006448 173.0
LYD1_k127_972386_0 coagulation factor 5 8 type - - - 1.411e-283 908.0
LYD1_k127_972386_1 COG2723 Beta-glucosidase 6-phospho-beta-glucosidase beta- galactosidase K05350 - 3.2.1.21 5.825e-205 649.0
LYD1_k127_972386_10 SdpI/YhfL protein family - - - 0.000000000000000000000000000000000000000000000004323 181.0
LYD1_k127_972386_11 PRC-barrel domain - - - 0.00000000000000000000007175 108.0
LYD1_k127_972386_2 ATPase activity K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 415.0
LYD1_k127_972386_3 transmembrane transport K02025,K15771 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 392.0
LYD1_k127_972386_4 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 383.0
LYD1_k127_972386_5 ABC-type sugar transport system, permease component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 348.0
LYD1_k127_972386_6 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009925 270.0
LYD1_k127_972386_7 OmpA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007172 260.0
LYD1_k127_972386_8 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002334 249.0
LYD1_k127_972386_9 ABC transporter substrate-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000008956 236.0
LYD1_k127_97243_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.0 3228.0
LYD1_k127_97243_1 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 4.5e-321 993.0
LYD1_k127_97243_10 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15975 - - 0.000000000000000000000000000000000000000000000004486 177.0
LYD1_k127_97243_2 TonB-dependent receptor - - - 9.172e-252 809.0
LYD1_k127_97243_3 Glycine D-amino acid oxidase (deaminating) - - - 1.557e-208 661.0
LYD1_k127_97243_4 Putative glucoamylase - - - 1.487e-197 627.0
LYD1_k127_97243_5 Bacterial protein of unknown function (DUF853) K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 473.0
LYD1_k127_97243_6 Transcriptional regulator K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 327.0
LYD1_k127_97243_7 ABC transporter substrate-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006924 253.0
LYD1_k127_97243_8 Putative cyclase K07130 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000257 209.0
LYD1_k127_97243_9 Domain of unknown function (DUF4442) - - - 0.000000000000000000000000000000000000000000000000009735 186.0
LYD1_k127_979466_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000001134 250.0
LYD1_k127_979466_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000000000000000001958 231.0
LYD1_k127_979466_2 Lipopolysaccharide-assembly - - - 0.0000000000000000000000000000000000000000000000000001774 191.0
LYD1_k127_979466_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000001081 65.0