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Overview

ID MAG02030
Name LYD1_bin.13
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class UBA6911
Order UBA6911
Family UBA6911
Genus UBA6911
Species
Assembly information
Completeness (%) 87.65
Contamination (%) 4.24
GC content (%) 55.0
N50 (bp) 7,250
Genome size (bp) 3,424,724

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3061

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1004829_0 HELICc2 K03722 - 3.6.4.12 2.926e-208 671.0
LYD1_k127_1004829_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 315.0
LYD1_k127_1004829_10 Phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit K02288,K02631 - 4.4.1.31,4.4.1.32 0.0004976 51.0
LYD1_k127_1004829_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000008683 231.0
LYD1_k127_1004829_3 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000006348 207.0
LYD1_k127_1004829_4 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000001653 174.0
LYD1_k127_1004829_5 Belongs to the Nudix hydrolase family K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000003057 169.0
LYD1_k127_1004829_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000008866 158.0
LYD1_k127_1004829_7 - - - - 0.0000000000000000000002722 103.0
LYD1_k127_1004829_8 monooxygenase activity K00688,K15760,K16157,K16242,K18223,K22353,K22357 GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0008150,GO:0008152,GO:0009987,GO:0015049,GO:0015050,GO:0015947,GO:0016491,GO:0016705,GO:0016709,GO:0032991,GO:0043446,GO:0044237,GO:0055114,GO:0071704,GO:1902494 1.14.13.227,1.14.13.236,1.14.13.25,1.14.13.69,2.4.1.1 0.00000003353 60.0
LYD1_k127_1004829_9 Peroxisomal targeting signal 1 K13342,K20915 GO:0000038,GO:0000268,GO:0001764,GO:0002119,GO:0002164,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005048,GO:0005052,GO:0005215,GO:0005216,GO:0005217,GO:0005221,GO:0005261,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005794,GO:0005829,GO:0006082,GO:0006464,GO:0006605,GO:0006612,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006886,GO:0006887,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007029,GO:0007031,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009056,GO:0009062,GO:0009791,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010647,GO:0010817,GO:0012505,GO:0015031,GO:0015075,GO:0015267,GO:0015276,GO:0015318,GO:0015833,GO:0015919,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016192,GO:0016477,GO:0016558,GO:0016560,GO:0016561,GO:0016567,GO:0017016,GO:0017038,GO:0017137,GO:0019395,GO:0019538,GO:0019752,GO:0019899,GO:0021537,GO:0021543,GO:0021795,GO:0021885,GO:0021895,GO:0021953,GO:0021987,GO:0022008,GO:0022029,GO:0022607,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023056,GO:0030154,GO:0030182,GO:0030258,GO:0030425,GO:0030900,GO:0031090,GO:0031267,GO:0031333,GO:0031903,GO:0031907,GO:0031974,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034220,GO:0034440,GO:0034613,GO:0036211,GO:0036477,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0042221,GO:0042277,GO:0042391,GO:0042493,GO:0042579,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043254,GO:0043412,GO:0043436,GO:0043574,GO:0043855,GO:0043933,GO:0043949,GO:0044057,GO:0044060,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044743,GO:0045046,GO:0045055,GO:0045184,GO:0045185,GO:0045927,GO:0046395,GO:0046883,GO:0046887,GO:0046903,GO:0046907,GO:0047485,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051259,GO:0051262,GO:0051286,GO:0051459,GO:0051461,GO:0051641,GO:0051649,GO:0051674,GO:0055085,GO:0055114,GO:0060322,GO:0061024,GO:0065002,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072347,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0090087,GO:0090150,GO:0090276,GO:0090277,GO:0097447,GO:0097458,GO:0098588,GO:0098655,GO:0098805,GO:0099094,GO:0120025,GO:0120038,GO:1901090,GO:1901091,GO:1901093,GO:1901094,GO:1901564,GO:1901575,GO:1902531,GO:1903530,GO:1903532 - 0.0000002981 59.0
LYD1_k127_1013026_0 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 308.0
LYD1_k127_1013026_1 lysyltransferase activity K07027 - - 0.00001688 53.0
LYD1_k127_1024930_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0 1064.0
LYD1_k127_1024930_1 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 475.0
LYD1_k127_1024930_2 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000004959 237.0
LYD1_k127_1024930_3 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000000008325 239.0
LYD1_k127_1024930_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 0.0000000000000000008224 92.0
LYD1_k127_1024930_6 Mo-molybdopterin cofactor metabolic process K03154 - - 0.00004131 49.0
LYD1_k127_102855_0 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001477 269.0
LYD1_k127_102855_1 FAD linked oxidase domain protein - - - 0.000000000000000000000000002006 117.0
LYD1_k127_1051587_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 538.0
LYD1_k127_1051587_1 creatininase K01470,K22232 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 406.0
LYD1_k127_1051587_2 peptidase U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 365.0
LYD1_k127_1051587_3 helix_turn_helix isocitrate lyase regulation K13641 - - 0.0000000000000000000000000000000000000000009804 166.0
LYD1_k127_1051587_4 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.00000000000000001044 85.0
LYD1_k127_1051587_5 Mannose-6-phosphate isomerase - - - 0.000000000549 65.0
LYD1_k127_1051587_6 Mo-molybdopterin cofactor metabolic process K03154 - - 0.00002937 50.0
LYD1_k127_1064599_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 355.0
LYD1_k127_1064599_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 343.0
LYD1_k127_1064599_2 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000006297 207.0
LYD1_k127_106567_0 Uncharacterised conserved protein (DUF2156) - - - 0.0000000000000000000000000000000000000000000000000000000004376 213.0
LYD1_k127_106567_1 Uncharacterised conserved protein (DUF2156) - - - 0.000000000000000000000000003311 122.0
LYD1_k127_106567_2 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000009277 57.0
LYD1_k127_1086094_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 505.0
LYD1_k127_1086094_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 397.0
LYD1_k127_1086094_2 Elongation factor G, domain IV K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 379.0
LYD1_k127_1086094_3 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006394 268.0
LYD1_k127_1086094_4 DNA protecting protein DprA K04096 - - 0.000000000000000000000000001182 117.0
LYD1_k127_1094125_0 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008973 347.0
LYD1_k127_1094125_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 310.0
LYD1_k127_1094125_2 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000004625 240.0
LYD1_k127_1094824_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 7.927e-230 715.0
LYD1_k127_1094824_1 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 480.0
LYD1_k127_1094824_2 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000001235 82.0
LYD1_k127_1101778_0 transposase, YhgA-like - - - 0.000000000000000000000000000000000000000000003097 179.0
LYD1_k127_1101778_1 NmrA-like family - - - 0.0000000004224 61.0
LYD1_k127_1120151_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008313 550.0
LYD1_k127_1120151_1 Protein of unknown function, DUF255 K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 561.0
LYD1_k127_1120151_2 Peptidase family M1 domain K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 397.0
LYD1_k127_1120151_3 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 352.0
LYD1_k127_1120151_4 Aldo Keto reductase K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 321.0
LYD1_k127_1120151_5 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004557 246.0
LYD1_k127_1120151_6 TPM domain K06872 - - 0.000000000000000000000000000000000000000000000000001217 195.0
LYD1_k127_1120151_7 Membrane - - - 0.000000000000000000000000000000000000000000000007267 187.0
LYD1_k127_1120151_8 Protein of unknown function (DUF971) K03593 - - 0.0000000000000000000000000007448 117.0
LYD1_k127_1120151_9 Cold shock protein domain K03704 - - 0.0000000000000000000000004199 105.0
LYD1_k127_1161377_0 PFAM ABC transporter related K02049 - - 0.000000000000000000000000000000000000000000000000000002458 206.0
LYD1_k127_1161377_1 - - - - 0.0000000000000000000000000000000000000000000000008514 185.0
LYD1_k127_1161377_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000001922 148.0
LYD1_k127_1161377_3 Nitroreductase family - - - 0.00000000000000000001161 96.0
LYD1_k127_1162851_0 Glutamine amidotransferase domain K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 486.0
LYD1_k127_1162851_1 aldo keto reductase K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008141 393.0
LYD1_k127_1162851_2 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006435 254.0
LYD1_k127_1162851_3 Secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000000000000000002011 173.0
LYD1_k127_1162851_4 Peptidase family M23 - - - 0.0000000000003178 82.0
LYD1_k127_1174346_0 Methyltransferase FkbM family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 302.0
LYD1_k127_1174346_1 glycosyl transferase group 1 K03208 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002282 280.0
LYD1_k127_1174346_2 Glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001845 261.0
LYD1_k127_1174346_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0004154 50.0
LYD1_k127_1182751_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 538.0
LYD1_k127_1182751_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 399.0
LYD1_k127_1182751_2 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 317.0
LYD1_k127_1182751_3 carbamoyl transferase, NodU family K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000468 255.0
LYD1_k127_1182751_4 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000002687 187.0
LYD1_k127_1182751_5 multi-organism process K03195 - - 0.0000000000000000000000000006452 121.0
LYD1_k127_1182751_6 CAAX protease self-immunity K07052 - - 0.00000001893 64.0
LYD1_k127_1182751_7 - - - - 0.000000209 54.0
LYD1_k127_1182751_8 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000003362 59.0
LYD1_k127_1182751_9 - - - - 0.00009212 50.0
LYD1_k127_118377_0 Belongs to the 3-oxoacid CoA-transferase family K01026 - 2.8.3.1 5.07e-203 645.0
LYD1_k127_118377_1 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006786 542.0
LYD1_k127_118377_2 PFAM Cysteine-rich domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 469.0
LYD1_k127_118377_3 TonB-dependent receptor K02014,K16087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 467.0
LYD1_k127_118377_4 Aldo/keto reductase family K07079 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 296.0
LYD1_k127_118377_5 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000002575 179.0
LYD1_k127_1191131_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 509.0
LYD1_k127_1195011_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003716 488.0
LYD1_k127_1195011_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 339.0
LYD1_k127_1195011_10 Regulates arginine biosynthesis genes K03402 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0001754 45.0
LYD1_k127_1195011_2 NAD(P)H binding domain of trans-2-enoyl-CoA reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 308.0
LYD1_k127_1195011_3 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000001158 262.0
LYD1_k127_1195011_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000001717 195.0
LYD1_k127_1195011_5 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02527,K02841,K02843,K12982 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000003183 191.0
LYD1_k127_1195011_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008654,GO:0009029,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0046401,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.7.1.130 0.000000000000000000000000000000000000000000000001631 188.0
LYD1_k127_1195011_7 - - - - 0.000000000000000007542 89.0
LYD1_k127_1195011_8 Ribosomal L28 family K02902 - - 0.0000000000009271 69.0
LYD1_k127_1195011_9 Protein of unknown function (DUF3108) - - - 0.000000000008377 75.0
LYD1_k127_1198859_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004879 587.0
LYD1_k127_1198859_1 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003478 279.0
LYD1_k127_1198859_2 Bacterial regulatory proteins, crp family - - - 0.000000000000000000000000000000000000000000000000000003776 198.0
LYD1_k127_1198859_3 - - - - 0.0000000005242 71.0
LYD1_k127_1208688_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 1.44e-216 680.0
LYD1_k127_1208688_1 UDP-N-acetyl-D-mannosamine dehydrogenase activity K02474,K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 559.0
LYD1_k127_1208688_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007627 466.0
LYD1_k127_1208688_3 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000000002259 220.0
LYD1_k127_1208688_4 PFAM Abortive infection protein K07052 - - 0.00000000000000000000000000000000000002109 152.0
LYD1_k127_1208688_5 Bacterial toxin of type II toxin-antitoxin system, YafQ K19157 - - 0.000000000000000000000000000000003255 134.0
LYD1_k127_1208688_6 bacterial-type proximal promoter sequence-specific DNA binding K07473 - - 0.0000000000000000000000000009522 114.0
LYD1_k127_1208688_7 Transposase K07491 - - 0.00000000000000000000001393 103.0
LYD1_k127_1208688_8 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000002113 60.0
LYD1_k127_1208688_9 toxin-antitoxin pair type II binding K06284 - - 0.00001158 53.0
LYD1_k127_1217205_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004891 337.0
LYD1_k127_1217205_1 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 306.0
LYD1_k127_1217205_2 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000436 171.0
LYD1_k127_1228684_0 FAD dependent oxidoreductase K00244,K13796 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 559.0
LYD1_k127_1228684_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007453 352.0
LYD1_k127_1228684_2 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 349.0
LYD1_k127_1228684_3 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 307.0
LYD1_k127_1228684_5 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000001455 201.0
LYD1_k127_1228684_6 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000005829 121.0
LYD1_k127_1228684_7 Cytochrome c3 - - - 0.00000000000000000003544 100.0
LYD1_k127_123077_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.0 1421.0
LYD1_k127_123077_1 TIGRFAM Carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 485.0
LYD1_k127_123077_2 PFAM transferase hexapeptide repeat containing protein K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 338.0
LYD1_k127_123077_3 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 289.0
LYD1_k127_123077_4 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000001137 215.0
LYD1_k127_123077_5 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.00000000000000000000000000000000001434 139.0
LYD1_k127_123077_6 Roadblock/LC7 domain - - - 0.000000000000000000107 95.0
LYD1_k127_123077_7 Tetratricopeptide repeat - - - 0.00000000003172 74.0
LYD1_k127_1239593_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 423.0
LYD1_k127_1239593_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000003897 258.0
LYD1_k127_1239593_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000000000000000000003387 190.0
LYD1_k127_1239593_3 Pyridoxal phosphate biosynthetic protein PdxA K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000005934 183.0
LYD1_k127_1243036_0 Drug resistance transporter Bcr CflA subfamily K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 431.0
LYD1_k127_1243036_1 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000593 415.0
LYD1_k127_1243036_2 NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000008947 210.0
LYD1_k127_1253607_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002658 248.0
LYD1_k127_1253607_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000148 152.0
LYD1_k127_1253607_2 - - - - 0.0000000000000000000008514 98.0
LYD1_k127_1258180_0 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004047 458.0
LYD1_k127_1258180_1 Ribonuclease HII K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 366.0
LYD1_k127_1258180_2 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 354.0
LYD1_k127_1258180_3 MFS/sugar transport protein - - - 0.0000000000000000000000000000000000000000001771 175.0
LYD1_k127_1258180_4 SnoaL-like domain - - - 0.000000000000000000000857 107.0
LYD1_k127_1264055_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008243 282.0
LYD1_k127_1264055_1 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001578 265.0
LYD1_k127_1264055_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005615,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0043167,GO:0043169,GO:0044237,GO:0044421,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.00000000000000000000000000000000000000005876 157.0
LYD1_k127_1264055_3 Jacalin-like lectin domain - - - 0.0000000000000000000000001418 119.0
LYD1_k127_1264055_4 DNA polymerase III chi subunit K02339 - 2.7.7.7 0.000006735 53.0
LYD1_k127_1273207_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 8.395e-223 713.0
LYD1_k127_1273207_1 Replicative DNA helicase K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 494.0
LYD1_k127_1273207_10 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000104 124.0
LYD1_k127_1273207_11 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000001009 106.0
LYD1_k127_1273207_12 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000001669 100.0
LYD1_k127_1273207_13 TIGRFAM competence protein ComEA helix-hairpin-helix repeat K02237 - - 0.000000000000000006946 86.0
LYD1_k127_1273207_14 Protein of unknown function (DUF503) K09764 - - 0.0000000000000005129 81.0
LYD1_k127_1273207_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 411.0
LYD1_k127_1273207_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 322.0
LYD1_k127_1273207_4 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 306.0
LYD1_k127_1273207_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000001511 230.0
LYD1_k127_1273207_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000613 223.0
LYD1_k127_1273207_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000116 186.0
LYD1_k127_1273207_8 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000008668 155.0
LYD1_k127_1273207_9 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000002059 154.0
LYD1_k127_1285345_0 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 363.0
LYD1_k127_1285345_1 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005248 295.0
LYD1_k127_1285345_2 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000001501 270.0
LYD1_k127_1285345_3 ABC transporter (Permease K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000001973 240.0
LYD1_k127_1285345_4 ABC transporter (permease) K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000121 225.0
LYD1_k127_1285345_5 nucleotide metabolic process - - - 0.00000000000000000000000000000001496 136.0
LYD1_k127_1285345_6 - - - - 0.0000000000000151 82.0
LYD1_k127_1310059_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 3.565e-274 853.0
LYD1_k127_1310059_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.188e-230 723.0
LYD1_k127_1310059_10 methyltransferase - - - 0.0000000000000000000000000000000000000000000000002786 193.0
LYD1_k127_1310059_11 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000006337 177.0
LYD1_k127_1310059_12 PFAM Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000002433 170.0
LYD1_k127_1310059_13 PFAM Phosphoribosyltransferase - - - 0.000000000000000000000000000000000000000001123 166.0
LYD1_k127_1310059_14 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000001414 151.0
LYD1_k127_1310059_15 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000001043 131.0
LYD1_k127_1310059_16 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000001365 131.0
LYD1_k127_1310059_17 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000000000000000002532 131.0
LYD1_k127_1310059_18 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000002076 126.0
LYD1_k127_1310059_19 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000002673 115.0
LYD1_k127_1310059_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 1.38e-222 699.0
LYD1_k127_1310059_20 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000004543 114.0
LYD1_k127_1310059_21 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000139 115.0
LYD1_k127_1310059_22 ribonuclease BN K07058 - - 0.0000000000000003199 89.0
LYD1_k127_1310059_23 COG1943 Transposase and inactivated derivatives - - - 0.000000000004315 72.0
LYD1_k127_1310059_24 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000001283 72.0
LYD1_k127_1310059_25 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000001028 68.0
LYD1_k127_1310059_26 Putative zinc-finger - - - 0.00005332 52.0
LYD1_k127_1310059_27 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.0001056 54.0
LYD1_k127_1310059_3 TonB-dependent receptor K13735,K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 480.0
LYD1_k127_1310059_4 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007012 413.0
LYD1_k127_1310059_5 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 332.0
LYD1_k127_1310059_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002911 279.0
LYD1_k127_1310059_7 PFAM response regulator receiver K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008953 274.0
LYD1_k127_1310059_8 Sensor histidine kinase, HAMP domain-containing K07644 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001308 274.0
LYD1_k127_1310059_9 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000006991 252.0
LYD1_k127_131680_0 PFAM glycoside hydrolase family 3 K05349 - 3.2.1.21 0.0 1034.0
LYD1_k127_131680_1 Protein of unknown function (DUF3237) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 464.0
LYD1_k127_131680_2 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 406.0
LYD1_k127_131680_3 Cupin 2, conserved barrel domain protein - - - 0.0007176 49.0
LYD1_k127_1326455_0 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 417.0
LYD1_k127_1326455_1 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008393 373.0
LYD1_k127_1326455_2 Epimerase dehydratase K01784,K17947 - 5.1.3.2,5.1.3.25 0.000000000000000000000000000000000000000000000000000000000000001719 229.0
LYD1_k127_1326455_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000006473 226.0
LYD1_k127_1326455_4 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000000000000000003629 216.0
LYD1_k127_1326455_5 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000005237 126.0
LYD1_k127_1326455_6 EthD domain - - - 0.00000000000000006673 83.0
LYD1_k127_1326455_7 NAD-dependent epimerase dehydratase - - - 0.000000000000001482 84.0
LYD1_k127_1326455_8 - - - - 0.00000000214 66.0
LYD1_k127_1326455_9 COG0500 SAM-dependent methyltransferases - - - 0.00003361 54.0
LYD1_k127_13434_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 6.204e-314 981.0
LYD1_k127_13434_1 Oligopeptide transporter OPT - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008304 553.0
LYD1_k127_1343609_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 8.052e-254 797.0
LYD1_k127_1343609_1 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006597 549.0
LYD1_k127_1343609_2 porphobilinogen synthase activity K01698 GO:0000287,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0030312,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 449.0
LYD1_k127_1343609_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000001297 277.0
LYD1_k127_1343609_4 dihydropteroate synthase K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000006375 267.0
LYD1_k127_1343609_5 PFAM CBS domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009902 255.0
LYD1_k127_1343609_6 CarD-like/TRCF domain K07736 - - 0.000000000000000000000000000000000000115 147.0
LYD1_k127_1364048_0 - - - - 0.0000000000000000000000000000000000000000000000004805 193.0
LYD1_k127_1364048_1 Cupin 2, conserved barrel domain protein - - - 0.0000000291 61.0
LYD1_k127_1364048_2 - - - - 0.0003359 49.0
LYD1_k127_1367573_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 431.0
LYD1_k127_1367573_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 396.0
LYD1_k127_1367573_2 Belongs to the UbiD family K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000008357 211.0
LYD1_k127_1367573_3 TIGRFAM TonB K03832 - - 0.00000000000000000000000000000000001506 145.0
LYD1_k127_1367573_4 SnoaL-like domain - - - 0.0000000000000000000000002141 113.0
LYD1_k127_1367573_5 Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate K00598 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044464 2.1.1.144 0.0001606 53.0
LYD1_k127_1383252_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 371.0
LYD1_k127_1383252_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002787 273.0
LYD1_k127_1383252_2 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.000000000000000000000000000000000000000000000000000000000001358 216.0
LYD1_k127_1383252_3 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000003358 188.0
LYD1_k127_1383252_4 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000001068 171.0
LYD1_k127_1383252_5 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000006407 107.0
LYD1_k127_1393883_0 glycosyl transferase, family 39 - - - 0.000000000000000000000000000006047 136.0
LYD1_k127_1398685_0 GTP-binding protein TypA K06207 - - 1.056e-263 823.0
LYD1_k127_1398685_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 287.0
LYD1_k127_1398685_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000008043 121.0
LYD1_k127_1398685_3 Peptidase M14 - - - 0.000000006154 58.0
LYD1_k127_1418335_0 Proton-conducting membrane transporter K12137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004316 571.0
LYD1_k127_1418335_1 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 351.0
LYD1_k127_1418335_2 Helix-turn-helix domain K02806 - - 0.0000000000000000000000000000000000000006704 151.0
LYD1_k127_1418335_3 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.000000000000000000000000000007311 121.0
LYD1_k127_1418335_4 hydrogenase 4 membrane K12140 - - 0.0000000000001328 77.0
LYD1_k127_1421200_0 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000553 273.0
LYD1_k127_1421200_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000005323 158.0
LYD1_k127_1427488_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 2.888e-262 825.0
LYD1_k127_1427488_1 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000001704 152.0
LYD1_k127_1427488_2 TIGRFAM phosphohistidine phosphatase SixA K08296 - - 0.0000000000000000000000000002505 120.0
LYD1_k127_1427488_3 CHAD - - - 0.000000000121 73.0
LYD1_k127_1470764_0 Sodium:solute symporter family - - - 1.816e-252 792.0
LYD1_k127_1470764_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006005 395.0
LYD1_k127_1470764_2 PFAM ADP-ribosylation Crystallin J1 - - - 0.000000000000000000000000000007881 126.0
LYD1_k127_1470764_3 Acetyltransferase (GNAT) family - - - 0.0000000000000001502 85.0
LYD1_k127_1471425_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 326.0
LYD1_k127_1471425_1 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 293.0
LYD1_k127_1478305_0 PFAM thiamine monophosphate synthase K00788 - 2.5.1.3 0.000000000000000000000000000000000001135 146.0
LYD1_k127_1478305_1 Tetratricopeptide repeat - - - 0.0000000000000006833 89.0
LYD1_k127_1478305_2 - - - - 0.0000000002122 66.0
LYD1_k127_1487963_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 403.0
LYD1_k127_1487963_1 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002846 386.0
LYD1_k127_1487963_2 beta-galactosidase activity K01190 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 350.0
LYD1_k127_1487963_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 298.0
LYD1_k127_1487963_4 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 283.0
LYD1_k127_1487963_5 energy transducer activity K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001483 263.0
LYD1_k127_1487963_6 Penicillinase repressor - - - 0.000000000000000000000000000000000000009597 147.0
LYD1_k127_1491184_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 384.0
LYD1_k127_1491184_1 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007473 276.0
LYD1_k127_1491184_2 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000002036 262.0
LYD1_k127_1491184_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000005139 83.0
LYD1_k127_1491215_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 3.931e-226 716.0
LYD1_k127_1491215_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 439.0
LYD1_k127_1491215_2 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000436 257.0
LYD1_k127_1491215_3 GDP-mannose mannosyl hydrolase activity K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000004075 168.0
LYD1_k127_1491215_4 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000001189 109.0
LYD1_k127_1492320_0 arsenical-resistance protein K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 534.0
LYD1_k127_1492320_1 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 461.0
LYD1_k127_1492320_10 PFAM regulatory protein, ArsR K03892 - - 0.0000000000000000000000000006838 117.0
LYD1_k127_1492320_11 - - - - 0.000000000000000000004211 96.0
LYD1_k127_1492320_12 Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide - - - 0.00000004149 62.0
LYD1_k127_1492320_13 Cupin 2, conserved barrel domain protein - - - 0.000008922 53.0
LYD1_k127_1492320_2 Cytochrome C biogenesis protein - - - 0.00000000000000000000000000000000000000000000000000000000001737 213.0
LYD1_k127_1492320_3 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000113 161.0
LYD1_k127_1492320_4 short-chain K00046 - 1.1.1.69 0.000000000000000000000000000000000000000006661 165.0
LYD1_k127_1492320_5 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.000000000000000000000000000000000000002474 151.0
LYD1_k127_1492320_6 OsmC-like protein - - - 0.00000000000000000000000000000000000002245 149.0
LYD1_k127_1492320_7 - - - - 0.00000000000000000000000000000001274 134.0
LYD1_k127_1492320_8 - - - - 0.0000000000000000000000000000004651 125.0
LYD1_k127_1492320_9 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.0000000000000000000000000005699 118.0
LYD1_k127_1511460_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000002079 200.0
LYD1_k127_1511460_2 Transcriptional regulator PadR-like family K10947 - - 0.0000000000000000000000000000003545 127.0
LYD1_k127_1511460_3 - - - - 0.00003359 47.0
LYD1_k127_1520533_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1964.0
LYD1_k127_1520533_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007084 303.0
LYD1_k127_1520533_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.00000000000000000000000000000000000000000002531 162.0
LYD1_k127_1520533_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000003109 149.0
LYD1_k127_1520533_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000007685 133.0
LYD1_k127_1521572_0 Arylsulfotransferase (ASST) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 494.0
LYD1_k127_1521572_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 412.0
LYD1_k127_1521572_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001409 288.0
LYD1_k127_1521572_3 PA14 K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000004667 183.0
LYD1_k127_1521572_4 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0000000000000000000000000000000164 130.0
LYD1_k127_1521572_5 Protein of unknown function (DUF3795) - - - 0.00000000000000000000000000003506 120.0
LYD1_k127_1521572_6 PFAM Biotin lipoyl attachment - - - 0.0000001831 55.0
LYD1_k127_1521572_7 Belongs to the UPF0312 family - - - 0.000002438 49.0
LYD1_k127_1536099_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008766 510.0
LYD1_k127_1536099_1 Urocanase Rossmann-like domain K01712 - 4.2.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009576 484.0
LYD1_k127_1536099_10 Belongs to the UPF0235 family K09131 - - 0.0000000000000000002554 91.0
LYD1_k127_1536099_11 Type IV pilus biogenesis stability protein PilW - - - 0.000004726 55.0
LYD1_k127_1536099_12 - - - - 0.000027 57.0
LYD1_k127_1536099_2 PFAM amidohydrolase K01464 - 3.5.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 414.0
LYD1_k127_1536099_3 ABC-type polar amino acid transport system ATPase component K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 287.0
LYD1_k127_1536099_4 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000001151 246.0
LYD1_k127_1536099_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000000000000002026 196.0
LYD1_k127_1536099_6 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000001085 190.0
LYD1_k127_1536099_7 'dna polymerase iii K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000104 179.0
LYD1_k127_1536099_8 Hfq protein - - - 0.000000000000000000000000000000006358 131.0
LYD1_k127_1536099_9 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000006064 111.0
LYD1_k127_1562340_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 7.167e-207 660.0
LYD1_k127_1562340_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 530.0
LYD1_k127_1562340_10 lipoprotein localization to outer membrane K02004 - - 0.00000000000000000000000000000001133 136.0
LYD1_k127_1562340_11 Beta-lactamase - - - 0.00000000000000000000000000002581 121.0
LYD1_k127_1562340_12 Predicted membrane protein (DUF2061) - - - 0.000000000000000000000009307 102.0
LYD1_k127_1562340_13 Transcriptional regulator K17472 GO:0001047,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0032991,GO:0032993,GO:0042802,GO:0042803,GO:0043933,GO:0044085,GO:0044212,GO:0046983,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051291,GO:0065003,GO:0071840,GO:0097159,GO:1901363 - 0.00000000000000000000005198 106.0
LYD1_k127_1562340_14 Beta-lactamase - - - 0.0000000000001414 73.0
LYD1_k127_1562340_2 PFAM Phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005748 507.0
LYD1_k127_1562340_3 Sulfite reductase beta subunit (hemoprotein) K00381,K00392 - 1.8.1.2,1.8.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 511.0
LYD1_k127_1562340_4 PFAM Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 394.0
LYD1_k127_1562340_5 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K00972 - 2.7.7.23,2.7.7.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 346.0
LYD1_k127_1562340_6 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 303.0
LYD1_k127_1562340_7 Tetrapyrrole (Corrin/Porphyrin) Methylases K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001324 278.0
LYD1_k127_1562340_8 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000002633 231.0
LYD1_k127_1562340_9 oligopeptide transport K03305 - - 0.000000000000000000000000000000000000000000000000000000000003326 224.0
LYD1_k127_1566547_0 PFAM Response regulator receiver domain K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 507.0
LYD1_k127_1566547_1 lyase activity K11645 GO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016829,GO:0016830,GO:0016832,GO:0042802,GO:0044424,GO:0044444,GO:0044464 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003974 471.0
LYD1_k127_1566547_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000004449 267.0
LYD1_k127_1566547_3 V4R - - - 0.00000000000000000000000000000000000000000000000000000000000000000003476 256.0
LYD1_k127_1566547_4 Domains REC, PAS, PAS, PP2C K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000001964 249.0
LYD1_k127_1566547_5 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000001327 185.0
LYD1_k127_1566547_6 COG1943 Transposase and inactivated derivatives - - - 0.0000000000000000000000000000000000000000000003343 176.0
LYD1_k127_1568123_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00124,K00335 - 1.6.5.3 1.857e-288 893.0
LYD1_k127_1568123_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 612.0
LYD1_k127_1568123_2 Enoyl-(Acyl carrier protein) reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008027 392.0
LYD1_k127_1568123_3 ATP synthesis coupled electron transport K00123,K00336 - 1.17.1.9,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006573 314.0
LYD1_k127_1574252_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000004137 200.0
LYD1_k127_1574252_1 Outer membrane efflux protein K12340 - - 0.00004342 49.0
LYD1_k127_1574252_2 Prokaryotic N-terminal methylation motif K02246 - - 0.0006963 48.0
LYD1_k127_1576162_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 426.0
LYD1_k127_1576162_1 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 GO:0008150,GO:0040007 - 0.0000000000006403 72.0
LYD1_k127_1576162_2 PFAM peptidase M48 Ste24p - - - 0.000003452 52.0
LYD1_k127_1576496_0 RNA methyltransferase, RsmD family K08316 - 2.1.1.171 0.00000000000000000004251 95.0
LYD1_k127_1576496_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000001629 64.0
LYD1_k127_1591257_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 1.898e-197 639.0
LYD1_k127_1591257_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008622 584.0
LYD1_k127_1591257_2 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009915 459.0
LYD1_k127_1591257_3 PFAM von Willebrand factor type A K07114 - - 0.00000000000000000000000000000000000000000000000000000001144 206.0
LYD1_k127_1591257_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000028,GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363 2.1.1.182 0.00000000000000000000000000000000000000000000001621 181.0
LYD1_k127_1591257_5 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000001723 138.0
LYD1_k127_1591257_6 Putative adhesin - - - 0.000000006555 66.0
LYD1_k127_1624389_0 Cys/Met metabolism PLP-dependent enzyme K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 521.0
LYD1_k127_1624389_1 Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000000000000000009299 163.0
LYD1_k127_1624389_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000004216 122.0
LYD1_k127_1624389_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000007925 108.0
LYD1_k127_162469_0 BlaR1 peptidase M56 - - - 0.000000000000000000000000000005644 138.0
LYD1_k127_162469_1 Penicillinase repressor - - - 0.00000000000000000000000000004739 120.0
LYD1_k127_162469_2 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.00000000000000000000004463 116.0
LYD1_k127_162469_3 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000007063 79.0
LYD1_k127_162469_4 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.000001606 50.0
LYD1_k127_1624989_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 414.0
LYD1_k127_1624989_1 Belongs to the citrate synthase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 299.0
LYD1_k127_1624989_2 Methylene-tetrahydrofolate reductase C terminal - - - 0.00000000000000000000000000000000000000000001748 163.0
LYD1_k127_1631073_0 Glutaryl-7-ACA acylase K06978 - - 2.498e-247 779.0
LYD1_k127_1631073_1 Protein of unknown function, DUF481 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008755 449.0
LYD1_k127_1631073_2 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005938 364.0
LYD1_k127_1636269_0 SNF2 family N-terminal domain - - - 7.538e-215 700.0
LYD1_k127_1636269_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 346.0
LYD1_k127_1636269_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00007865 48.0
LYD1_k127_1654564_0 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008614 451.0
LYD1_k127_1654564_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 366.0
LYD1_k127_1654564_2 TGS domain K06944 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 306.0
LYD1_k127_1654564_3 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000001672 206.0
LYD1_k127_1654564_4 von Willebrand factor, type A K07114,K12511 - - 0.000000000000000000000002851 116.0
LYD1_k127_1657665_0 Spermine/spermidine synthase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 308.0
LYD1_k127_1657665_1 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000001728 220.0
LYD1_k127_1657665_2 - - - - 0.00000007001 59.0
LYD1_k127_1667076_0 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 410.0
LYD1_k127_1667076_1 protein kinase related protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 323.0
LYD1_k127_1667076_2 PFAM Glycosyl transferase, group 1 - - - 0.0000001623 53.0
LYD1_k127_1701501_0 Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT) K00672 - 2.3.1.101 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 320.0
LYD1_k127_1701501_1 formylmethanofuran dehydrogenase activity K00202 GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0044237,GO:0044281 1.2.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000006143 257.0
LYD1_k127_1701501_2 Catalyzes the hydrolysis of methenyl-H(4)MPT( ) to 5- formyl-H(4)MPT K01499 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009987,GO:0015947,GO:0016787,GO:0016810,GO:0016814,GO:0018759,GO:0019238,GO:0043446,GO:0044237,GO:0044424,GO:0044464,GO:0071704 3.5.4.27 0.0000000000000000000000000000000000000000000000000000000000000003163 229.0
LYD1_k127_1745345_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005905 531.0
LYD1_k127_1745345_1 Alcohol dehydrogenase GroES-like domain K00001,K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006512 486.0
LYD1_k127_1745345_2 DinB family - - - 0.000000000000000000000000000000000000000000000000000003317 195.0
LYD1_k127_1745345_3 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000007973 160.0
LYD1_k127_1745345_4 Sugar (and other) transporter - - - 0.00000000000000000000000000000006293 126.0
LYD1_k127_1745345_5 Aminotransferase K03430 - 2.6.1.37 0.0000000000004481 74.0
LYD1_k127_1746749_0 PFAM Orn DAP Arg decarboxylase 2 K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006852 544.0
LYD1_k127_1746749_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000006416 256.0
LYD1_k127_1746749_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.8 0.000000000005067 75.0
LYD1_k127_1770061_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 337.0
LYD1_k127_1770061_1 PFAM regulatory protein, MerR K13640 - - 0.0000000000000000000000000000000000003153 145.0
LYD1_k127_1770061_2 - - - - 0.0000000000000000000000005746 110.0
LYD1_k127_1778476_0 RNA polymerase sigma-54 factor K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 414.0
LYD1_k127_1778476_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005294 400.0
LYD1_k127_1778476_2 PFAM ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009601 307.0
LYD1_k127_1778476_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 316.0
LYD1_k127_1778476_4 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000001528 107.0
LYD1_k127_1778476_5 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.000000000000000000002461 110.0
LYD1_k127_1778476_6 n-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00003999 49.0
LYD1_k127_178289_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 536.0
LYD1_k127_178289_1 alpha beta alpha domain I K00966,K16881 - 2.7.7.13,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000396 271.0
LYD1_k127_178289_10 DNA-templated transcription, initiation K03088 - - 0.0001041 53.0
LYD1_k127_178289_2 Belongs to the peptidase M50B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008016 261.0
LYD1_k127_178289_3 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000924 196.0
LYD1_k127_178289_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000000003935 196.0
LYD1_k127_178289_5 Mur ligase middle domain K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000172 166.0
LYD1_k127_178289_6 von Willebrand factor, type A - - - 0.0000000000000000000000000000000005077 144.0
LYD1_k127_178289_7 Universal stress protein - - - 0.000000000000000000000000205 116.0
LYD1_k127_178289_8 - - - - 0.0000000000000000000001036 102.0
LYD1_k127_178289_9 protein containing LysM domain - - - 0.00009782 53.0
LYD1_k127_1790234_0 hydrolase, family 3 K05349 - 3.2.1.21 0.0 1131.0
LYD1_k127_1790234_1 Sugar (and other) transporter - - - 0.0000000000000003526 80.0
LYD1_k127_1791237_0 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001279 293.0
LYD1_k127_1791237_1 formate dehydrogenase K00127 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000023 264.0
LYD1_k127_1791237_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002734 266.0
LYD1_k127_1791237_3 Necessary for formate dehydrogenase activity K02380 - - 0.0000000000000000000000000000000000000000000000005442 186.0
LYD1_k127_1791237_4 - - - - 0.00000000000000000000000000000006191 138.0
LYD1_k127_1791237_5 4Fe-4S dicluster domain K00124 - - 0.000000000000000815 78.0
LYD1_k127_1791237_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000311 78.0
LYD1_k127_1801251_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1070.0
LYD1_k127_1801251_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 7.275e-288 894.0
LYD1_k127_1801251_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.779e-287 895.0
LYD1_k127_1801251_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 9.783e-217 682.0
LYD1_k127_1801251_4 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 342.0
LYD1_k127_1801251_5 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000001425 226.0
LYD1_k127_1801251_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000002617 104.0
LYD1_k127_1801251_7 Tetratricopeptide repeat - - - 0.0000000001072 72.0
LYD1_k127_1820057_0 Amino acid polyamine organocation transporter, APC superfamily K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007675 576.0
LYD1_k127_1820057_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007017 457.0
LYD1_k127_1820057_2 TrkA-N domain K03499,K10716 - - 0.0000000000000000000000000000000000000001032 162.0
LYD1_k127_1820057_3 AMP binding - - - 0.0000000000000000000000000000000000007996 145.0
LYD1_k127_1824151_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000001446 264.0
LYD1_k127_1824151_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000005114 172.0
LYD1_k127_1829550_0 symporter activity K03307 - - 3.886e-290 897.0
LYD1_k127_1829550_1 Acetyl-CoA hydrolase/transferase N-terminal domain K01067 - 3.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 556.0
LYD1_k127_1829550_2 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 429.0
LYD1_k127_1829550_3 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 348.0
LYD1_k127_1829550_4 DNA photolyase activity K03716 - 4.1.99.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 319.0
LYD1_k127_1829550_5 Oligoendopeptidase f - - - 0.0000000000000000000000004305 106.0
LYD1_k127_1829550_6 ParB-like nuclease domain K03497 - - 0.0000000000000002079 90.0
LYD1_k127_1829550_7 - - - - 0.0000000000000005932 79.0
LYD1_k127_1829550_8 - - - - 0.0004911 52.0
LYD1_k127_1848846_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005261 471.0
LYD1_k127_1848846_1 Tetratricopeptide repeat - - - 0.0001658 50.0
LYD1_k127_1855453_0 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 407.0
LYD1_k127_1855453_1 RNA-binding protein - - - 0.00000000000000000000000000284 114.0
LYD1_k127_1855453_2 SnoaL-like domain - - - 0.00000000000000000000009731 102.0
LYD1_k127_1855453_3 - - - - 0.00000000003381 66.0
LYD1_k127_1869895_0 Belongs to the glycosyl hydrolase 43 family K01198 - 3.2.1.37 1.569e-295 916.0
LYD1_k127_1869895_1 PFAM Major Facilitator Superfamily K08191 - - 8.776e-220 687.0
LYD1_k127_1869895_10 DNA-3-methyladenine glycosylase activity K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000002731 257.0
LYD1_k127_1869895_11 Predicted metal-binding protein (DUF2284) - - - 0.000000000000000000000000000000000000000000000000000000000000000000004412 243.0
LYD1_k127_1869895_12 lactoylglutathione lyase activity K03088 - - 0.0000000000000000000000000000000000000000000001336 178.0
LYD1_k127_1869895_13 polysaccharide catabolic process K01179,K05991 - 3.2.1.123,3.2.1.4 0.00000000003497 67.0
LYD1_k127_1869895_2 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008202 420.0
LYD1_k127_1869895_3 PFAM Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006546 362.0
LYD1_k127_1869895_4 Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 350.0
LYD1_k127_1869895_5 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 326.0
LYD1_k127_1869895_6 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008543 314.0
LYD1_k127_1869895_7 Diphthamide synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001532 263.0
LYD1_k127_1869895_8 GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005089 261.0
LYD1_k127_1869895_9 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001112 274.0
LYD1_k127_1881961_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 333.0
LYD1_k127_1881961_1 - K02172 - - 0.000000000000000000000000000000000000000000000000000000000000000000004294 246.0
LYD1_k127_1881961_2 Protein of unknown function (DUF3738) - - - 0.000000000000000000000000000000000000000000000000005455 192.0
LYD1_k127_1881961_3 Oar protein - - - 0.000000000000008807 78.0
LYD1_k127_1894374_0 PFAM Major facilitator superfamily K08178 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 323.0
LYD1_k127_1894374_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000001345 134.0
LYD1_k127_1894997_0 PFAM Thermolysin metallopeptidase, alpha-helical domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 429.0
LYD1_k127_1894997_1 COG0553 Superfamily II DNA RNA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000393 245.0
LYD1_k127_1894997_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0001651 44.0
LYD1_k127_191544_0 Major facilitator superfamily - - - 0.0000000000000000000000000000000000002149 156.0
LYD1_k127_191544_1 PFAM Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.00000000000000000000000000008891 127.0
LYD1_k127_191544_2 Universal bacterial protein YeaZ K14742 - - 0.00000000000000000004988 96.0
LYD1_k127_191544_3 Ribosomal-protein-alanine acetyltransferase K03789 GO:0003674,GO:0003824,GO:0004596,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.128 0.000000000000005657 81.0
LYD1_k127_191544_4 Carboxymuconolactone decarboxylase family - - - 0.000000114 60.0
LYD1_k127_1920111_0 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 288.0
LYD1_k127_1920111_1 PFAM homoserine dehydrogenase K00003,K12524 - 1.1.1.3,2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000002035 271.0
LYD1_k127_1920111_2 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000003388 208.0
LYD1_k127_1931769_0 FMN_bind - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 352.0
LYD1_k127_1931769_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000009254 146.0
LYD1_k127_1931769_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000006946 63.0
LYD1_k127_195466_0 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 412.0
LYD1_k127_195466_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 290.0
LYD1_k127_195466_2 Sigma factor PP2C-like phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008595 301.0
LYD1_k127_195466_3 - - - - 0.000000000000000000000000000000000000000000000000003472 186.0
LYD1_k127_195466_4 subunit of a heme lyase K02200 - - 0.00000000000003937 80.0
LYD1_k127_1958896_0 May be involved in recombinational repair of damaged DNA K03631,K13582 GO:0000724,GO:0000725,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009295,GO:0009314,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 402.0
LYD1_k127_1958896_1 WD40-like Beta Propeller K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008464 281.0
LYD1_k127_1958896_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000002719 239.0
LYD1_k127_1958896_3 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000000000000000000000000000008858 220.0
LYD1_k127_1958896_4 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000005392 198.0
LYD1_k127_1958896_5 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0000000000000000000000000000001921 127.0
LYD1_k127_1958896_6 energy transducer activity K03832 - - 0.000207 52.0
LYD1_k127_1970777_0 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000196 257.0
LYD1_k127_1970777_1 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.0000000000000000000009449 98.0
LYD1_k127_1970777_2 Carboxypeptidase regulatory-like domain - - - 0.00000002427 64.0
LYD1_k127_197308_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 316.0
LYD1_k127_197308_1 pfkB family carbohydrate kinase K18478 - 2.7.1.184 0.000000000000000000000000000000000000000000000000000000000000003668 230.0
LYD1_k127_197308_2 Isochorismatase family K08281 - 3.5.1.19 0.000000000000000000000000000000000001654 146.0
LYD1_k127_197308_3 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000001309 105.0
LYD1_k127_1975878_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000327 234.0
LYD1_k127_1975878_1 HlyD family secretion protein - - - 0.0000000000000000000000000000000000001813 154.0
LYD1_k127_1997672_0 AcrB/AcrD/AcrF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 500.0
LYD1_k127_1997672_1 Belongs to the beta-ketoacyl-ACP synthases family K14660 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004373 506.0
LYD1_k127_1997672_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 400.0
LYD1_k127_1997672_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 291.0
LYD1_k127_1997672_4 FAE1/Type III polyketide synthase-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002244 290.0
LYD1_k127_1997672_5 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008563 251.0
LYD1_k127_1997672_6 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000000000000000000006718 109.0
LYD1_k127_1997672_7 acyl carrier protein K02078 - - 0.0000000000005268 71.0
LYD1_k127_1997672_8 YceI-like domain - - - 0.000456 50.0
LYD1_k127_2000179_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 1.539e-311 966.0
LYD1_k127_2000179_1 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 485.0
LYD1_k127_2000179_10 transposase activity K07497 - - 0.0000000000000000001249 92.0
LYD1_k127_2000179_2 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 452.0
LYD1_k127_2000179_3 NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 361.0
LYD1_k127_2000179_4 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009247 360.0
LYD1_k127_2000179_5 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 342.0
LYD1_k127_2000179_6 ABC transporter K01990,K09691,K09693 - 3.6.3.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 334.0
LYD1_k127_2000179_7 transposition K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002097 280.0
LYD1_k127_2000179_8 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000008127 236.0
LYD1_k127_2000179_9 Transport permease protein K01992,K09690 - - 0.000000000000000000000000000000000000000000000000000000002675 209.0
LYD1_k127_2017630_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 448.0
LYD1_k127_2017630_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 417.0
LYD1_k127_2017630_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 394.0
LYD1_k127_2017630_3 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000000000000000001632 192.0
LYD1_k127_2017630_4 Glycosyl transferase family 9 K02849,K12982 - - 0.00000000000000001185 87.0
LYD1_k127_2017630_5 Protein of unknown function (DUF2905) - - - 0.000000000000001959 78.0
LYD1_k127_2017630_6 COG2931, RTX toxins and related Ca2 -binding proteins K01406,K20276 - 3.4.24.40 0.00000000000003591 80.0
LYD1_k127_2017630_7 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0002243 51.0
LYD1_k127_2018375_0 ABC 3 transport family K02075,K09816 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003747 254.0
LYD1_k127_2018375_1 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.00000000000000000000000000000000000000000000000000000000000002618 226.0
LYD1_k127_202482_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 4.601e-291 903.0
LYD1_k127_202482_1 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 507.0
LYD1_k127_202482_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.000000000000000000000000000000000000000000000000000000000000000113 224.0
LYD1_k127_202482_3 - - - - 0.00000000000000006994 83.0
LYD1_k127_204041_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 434.0
LYD1_k127_204041_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 431.0
LYD1_k127_204041_2 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009807 375.0
LYD1_k127_204041_3 SPFH Band 7 PHB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 349.0
LYD1_k127_204041_4 DegT DnrJ EryC1 StrS aminotransferase family K02805 - 2.6.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 303.0
LYD1_k127_204041_5 mannitol 2-dehydrogenase activity K11690 - - 0.00000000000000000000000000000000000000000000000002417 181.0
LYD1_k127_204041_6 GDYXXLXY protein - - - 0.0000000000000000000000000000000001161 141.0
LYD1_k127_204041_7 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000418 101.0
LYD1_k127_2089706_0 symporter activity K03307 - - 2.57e-294 911.0
LYD1_k127_2089706_1 ribulokinase activity K00853 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008741,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0019566,GO:0019568,GO:0019569,GO:0019572,GO:0019637,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046365,GO:0046373,GO:0046835,GO:0051167,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576 2.7.1.16 1.586e-250 784.0
LYD1_k127_2089706_2 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 414.0
LYD1_k127_2089706_3 Class ii aldolase K01628,K03077 - 4.1.2.17,5.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 303.0
LYD1_k127_2089706_4 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.000000000000000000000000000000000000000000005395 167.0
LYD1_k127_2091219_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 509.0
LYD1_k127_2091219_1 to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009976 421.0
LYD1_k127_2091219_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 301.0
LYD1_k127_2091219_3 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000006516 147.0
LYD1_k127_2118695_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K10535 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015975,GO:0015980,GO:0016491,GO:0016661,GO:0016663,GO:0019329,GO:0019331,GO:0034641,GO:0042597,GO:0044237,GO:0044281,GO:0044464,GO:0045333,GO:0047991,GO:0055114 1.7.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 581.0
LYD1_k127_2118695_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000668 342.0
LYD1_k127_2118695_2 - - - - 0.00000000000000000000001309 101.0
LYD1_k127_2118695_3 Dehydrogenase - - - 0.00000000000000000000007953 98.0
LYD1_k127_211958_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 333.0
LYD1_k127_211958_1 Sigma-70, region 4 K03088 - - 0.0000000000000000000000002551 113.0
LYD1_k127_2158015_0 synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 481.0
LYD1_k127_2158015_1 - - - - 0.00000000000000000000000000000000000000000000000000000000003022 217.0
LYD1_k127_2158015_2 Nitroreductase - - - 0.0000000000000000000000000000000000000000000116 170.0
LYD1_k127_2158015_3 Protein of unknown function (DUF1566) - - - 0.000000000447 66.0
LYD1_k127_2158015_4 Major Facilitator Superfamily - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000004155 62.0
LYD1_k127_2158015_6 COG0457 FOG TPR repeat - - - 0.000009184 55.0
LYD1_k127_2160675_0 Inositol monophosphatase K01082,K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001651 285.0
LYD1_k127_2160675_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003988 258.0
LYD1_k127_2160675_2 Yqey-like protein K09117 - - 0.000000000000000000000000000000000000004158 150.0
LYD1_k127_2167489_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 6.831e-238 749.0
LYD1_k127_2167489_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002749 280.0
LYD1_k127_2167489_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000000000000000000000000000000000005483 181.0
LYD1_k127_2167489_3 peptidyl-prolyl cis-trans isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000002958 141.0
LYD1_k127_217354_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 589.0
LYD1_k127_217354_1 DeoC/LacD family aldolase K08321 - 2.3.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 452.0
LYD1_k127_217354_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000002829 214.0
LYD1_k127_217354_3 PFAM class II aldolase adducin family protein - - - 0.00000000000000000000000000000000000000000000000000001162 195.0
LYD1_k127_217354_4 - - - - 0.000000001774 59.0
LYD1_k127_2179277_0 formate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 480.0
LYD1_k127_2179277_1 Phage integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000002177 232.0
LYD1_k127_2179277_2 Las17-binding protein actin regulator - - - 0.0009201 45.0
LYD1_k127_2179367_0 peptidase S9 prolyl oligopeptidase active site - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 3.121e-266 835.0
LYD1_k127_2179367_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 8.465e-206 651.0
LYD1_k127_2179367_10 NUDIX domain - - - 0.00000000000000000000000000000000000008907 148.0
LYD1_k127_2179367_11 Cytidylate kinase-like family - - - 0.00000000000000000000000000000000001426 143.0
LYD1_k127_2179367_2 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003992 447.0
LYD1_k127_2179367_3 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 417.0
LYD1_k127_2179367_4 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 388.0
LYD1_k127_2179367_5 belongs to the nudix hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 380.0
LYD1_k127_2179367_6 PFAM acyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 366.0
LYD1_k127_2179367_7 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 350.0
LYD1_k127_2179367_8 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002083 293.0
LYD1_k127_2179367_9 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000409 248.0
LYD1_k127_2182968_0 Mitochondrial biogenesis AIM24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008585 400.0
LYD1_k127_2182968_1 metalloendopeptidase activity K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 387.0
LYD1_k127_2182968_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000006122 199.0
LYD1_k127_2182968_3 PFAM Integral membrane protein TerC K05794 - - 0.00000000000000005309 83.0
LYD1_k127_2187638_0 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 353.0
LYD1_k127_2187638_1 VWA containing CoxE family protein K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 348.0
LYD1_k127_2187638_10 - - - - 0.000000003693 64.0
LYD1_k127_2187638_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004132 341.0
LYD1_k127_2187638_3 short-chain dehydrogenase reductase SDR K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 328.0
LYD1_k127_2187638_4 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002084 237.0
LYD1_k127_2187638_5 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000002982 218.0
LYD1_k127_2187638_6 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000003087 186.0
LYD1_k127_2187638_7 esterase - - - 0.0000000000000000000000000000000000000000592 164.0
LYD1_k127_2187638_8 dehydratase - - - 0.0000000000000000000000000008178 123.0
LYD1_k127_2187638_9 O-Antigen ligase K18814 - - 0.00000000000000001657 93.0
LYD1_k127_221798_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 322.0
LYD1_k127_221798_1 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000001087 155.0
LYD1_k127_221798_2 YCII-related domain K09780 - - 0.0000000000000000006789 88.0
LYD1_k127_221798_3 COGs COG2402 nucleic acid-binding protein contains PIN domain - - - 0.00000007287 60.0
LYD1_k127_2220499_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 449.0
LYD1_k127_2220499_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 424.0
LYD1_k127_2220499_2 TIGRFAM geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000002797 199.0
LYD1_k127_2220499_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000834 120.0
LYD1_k127_2220499_4 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000007631 80.0
LYD1_k127_2220499_5 pyrroloquinoline quinone binding - - - 0.00000002085 59.0
LYD1_k127_2294875_0 - - - - 5.666e-209 667.0
LYD1_k127_2294875_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 459.0
LYD1_k127_2294875_2 neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 327.0
LYD1_k127_2294875_3 glutamyl-tRNA reductase activity K02407,K02492 GO:0005575,GO:0005623,GO:0009288,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0055040 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 298.0
LYD1_k127_2294875_4 transferase activity, transferring glycosyl groups K06984 - 2.4.2.54 0.000000000000000000000000000000000000000000000000000000000000000000000000003205 263.0
LYD1_k127_2294875_5 Protein of unknown function (DUF447) K09154 - - 0.00000000000000000000000000000007937 131.0
LYD1_k127_2332356_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000001657 72.0
LYD1_k127_2335239_0 Carboxypeptidase regulatory-like domain - - - 2.944e-305 957.0
LYD1_k127_2335239_1 PBP superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 336.0
LYD1_k127_2335239_2 RNA polymerase sigma factor K03088 - - 0.000000000000000000000000000000003575 135.0
LYD1_k127_2335239_3 DNA-binding transcription factor activity K03892 - - 0.00002074 47.0
LYD1_k127_2335239_4 Putative zinc-finger - - - 0.0002799 46.0
LYD1_k127_2348129_0 response regulator, receiver - - - 0.0000000000000000000000005992 119.0
LYD1_k127_2348129_1 Protein of unknown function (DUF3467) - - - 0.00000000000000001577 88.0
LYD1_k127_2349465_0 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K07540,K18427 - 2.3.1.54,4.1.1.83,4.1.99.11 1.687e-257 809.0
LYD1_k127_2349465_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001151 267.0
LYD1_k127_2349465_2 peptidase - - - 0.0000000000000000000000000000000000000001364 152.0
LYD1_k127_236596_0 serine-type D-Ala-D-Ala carboxypeptidase activity K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008229 310.0
LYD1_k127_236596_1 UDP-N-acetylglucosamine pyrophosphorylase K00972 K07141 - 2.7.7.76 0.000008618 52.0
LYD1_k127_2385702_0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000000000000000000000000000000000002094 269.0
LYD1_k127_2385702_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000001139 178.0
LYD1_k127_2385702_2 Thiamine-binding protein - - - 0.0000000000000000000000000000000000000001896 153.0
LYD1_k127_2385702_3 L,D-transpeptidase catalytic domain - - - 0.00001668 54.0
LYD1_k127_2387413_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 393.0
LYD1_k127_2387413_1 PFAM Thiamine pyrophosphate K00170,K00187 - 1.2.7.1,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004788 313.0
LYD1_k127_2387413_2 Transglycosylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 297.0
LYD1_k127_2387413_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000006685 119.0
LYD1_k127_239750_0 Putative esterase K07214 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 410.0
LYD1_k127_239750_1 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.00000000000000000000000000000000000000000000003764 183.0
LYD1_k127_239750_2 - - - - 0.000000000000005747 79.0
LYD1_k127_239750_3 DinB family - - - 0.00000000005262 72.0
LYD1_k127_2398654_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 370.0
LYD1_k127_2398654_1 nitrite transmembrane transporter activity K08177 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003046 293.0
LYD1_k127_2398654_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001414 279.0
LYD1_k127_2398654_3 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000001772 76.0
LYD1_k127_2399345_0 Phosphate acyltransferases K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 300.0
LYD1_k127_2399345_1 ATP-dependent helicase HrpB K03579 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000003372 190.0
LYD1_k127_2399345_2 NUDIX domain K03574,K12152 GO:0003674,GO:0003824,GO:0004787,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0017111 3.6.1.55 0.0000000000007469 76.0
LYD1_k127_2417174_0 Zinc carboxypeptidase - - - 1.71e-303 950.0
LYD1_k127_2417174_1 Belongs to the RtcB family K14415 - 6.5.1.3 5.691e-246 767.0
LYD1_k127_2417174_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.888e-197 625.0
LYD1_k127_2417174_3 Archease protein family (MTH1598/TM1083) - - - 0.00000000000000000000000000000000000000000953 158.0
LYD1_k127_2438425_0 Polysaccharide biosynthesis protein - - - 0.00000000000000000000009612 110.0
LYD1_k127_2438425_1 PFAM O-antigen polymerase - - - 0.00000462 59.0
LYD1_k127_2448121_0 cellulose binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 321.0
LYD1_k127_2448121_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004645 295.0
LYD1_k127_2448121_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000001259 234.0
LYD1_k127_2448121_3 Protein of unknown function (DUF2914) - - - 0.000000000000000000000000000000000000000000000005761 180.0
LYD1_k127_2448121_4 Mo-molybdopterin cofactor metabolic process K03636,K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000005574 139.0
LYD1_k127_2448121_5 outer membrane autotransporter barrel domain protein - - - 0.00000000000000000000000000001304 129.0
LYD1_k127_2453649_0 Carboxypeptidase regulatory-like domain - - - 2.631e-254 827.0
LYD1_k127_2453649_1 Galactose oxidase, central domain - - - 0.0000000000000000000000000000000000000000000000000000002264 207.0
LYD1_k127_2459654_0 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000004872 209.0
LYD1_k127_2459654_1 DUF218 domain - GO:0000270,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0030203,GO:0031224,GO:0042546,GO:0043164,GO:0043170,GO:0044085,GO:0044425,GO:0044464,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901564 - 0.0000000000000000000000000000004389 132.0
LYD1_k127_2459654_2 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.00000000000000000000003122 109.0
LYD1_k127_2466575_0 Acetolactate synthase K01652 - 2.2.1.6 0.0000000000000000000000324 113.0
LYD1_k127_2466575_1 - - - - 0.00000000000000008534 91.0
LYD1_k127_2467625_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 611.0
LYD1_k127_2467625_1 O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004288 282.0
LYD1_k127_2472905_0 TIGRFAM drug resistance transporter, EmrB QacA subfamily K03446 - - 4.254e-205 650.0
LYD1_k127_2472905_1 Peptidase m48 ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004236 246.0
LYD1_k127_2472905_2 COG1943 Transposase and inactivated derivatives K07491 - - 0.000000000000000000000001904 109.0
LYD1_k127_2474014_0 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 4.552e-194 629.0
LYD1_k127_2474014_1 PFAM Aminotransferase class I and II K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 427.0
LYD1_k127_2474014_2 PFAM single-strand binding protein Primosomal replication protein n K03111 - - 0.0000000000000000000000000000004601 126.0
LYD1_k127_2489709_0 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003174 268.0
LYD1_k127_2489709_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000000000002436 203.0
LYD1_k127_2489709_2 MlaD protein K02067 - - 0.00000000000000000000000001222 113.0
LYD1_k127_2489709_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000007485 116.0
LYD1_k127_2489709_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000004703 100.0
LYD1_k127_2489709_5 - - - - 0.0002762 46.0
LYD1_k127_2494604_0 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 301.0
LYD1_k127_2494604_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000004107 157.0
LYD1_k127_2494604_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000926 49.0
LYD1_k127_2506377_0 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000002231 137.0
LYD1_k127_2506377_1 Protein of unknown function DUF262 - - - 0.00000000000000000000000000000000007458 143.0
LYD1_k127_2506377_2 Ion channel K10716 - - 0.0000000000000000000000000000003698 127.0
LYD1_k127_2508942_0 B12 binding domain - - - 3.5e-229 718.0
LYD1_k127_2508942_1 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003544 271.0
LYD1_k127_2508942_2 lipoprotein transporter activity K02003,K09810 - - 0.0000000000000000000000000000000000000000000000000000000000001825 224.0
LYD1_k127_2508942_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000001588 207.0
LYD1_k127_2508942_4 Cupin 2, conserved barrel domain protein - - - 0.0000001072 62.0
LYD1_k127_2508942_5 - - - - 0.0001255 52.0
LYD1_k127_2508942_6 - - - - 0.0006633 47.0
LYD1_k127_2517815_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.936e-225 709.0
LYD1_k127_2517815_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 526.0
LYD1_k127_2517815_2 Cobalamin B12-binding K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000003373 210.0
LYD1_k127_2517815_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000001609 200.0
LYD1_k127_2517815_4 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000000000109 195.0
LYD1_k127_2517815_5 - - - - 0.0000000000000000000000000000000000005357 147.0
LYD1_k127_2517815_6 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000001424 126.0
LYD1_k127_2517815_7 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000002639 77.0
LYD1_k127_2517815_8 Putative zinc-finger - - - 0.000002813 54.0
LYD1_k127_2534584_0 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000008142 181.0
LYD1_k127_2534584_1 - - - - 0.00000000000000001054 95.0
LYD1_k127_2534584_2 C-terminal four TMM region of protein-O-mannosyltransferase K00728,K06113,K12685 - 2.4.1.109,3.2.1.99 0.00000000000000002498 93.0
LYD1_k127_2540186_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 541.0
LYD1_k127_2540186_1 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 485.0
LYD1_k127_2540186_2 Sugar (and other) transporter K08195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004141 261.0
LYD1_k127_2540186_4 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000007654 171.0
LYD1_k127_2540186_6 PFAM TonB-dependent Receptor Plug - - - 0.000000000000001082 83.0
LYD1_k127_2540186_7 hydrolase activity - - - 0.000000002224 70.0
LYD1_k127_2540186_8 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.000004417 56.0
LYD1_k127_2546353_0 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 414.0
LYD1_k127_2546353_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 375.0
LYD1_k127_2546353_2 dTDP-4-dehydrorhamnose reductase K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 308.0
LYD1_k127_2546353_3 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000001422 221.0
LYD1_k127_2546353_4 by glimmer - - - 0.000000009225 57.0
LYD1_k127_2546353_5 PFAM Uroporphyrinogen decarboxylase (URO-D) - - - 0.000003978 51.0
LYD1_k127_2553267_0 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 439.0
LYD1_k127_2553267_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 383.0
LYD1_k127_2553267_2 OPT oligopeptide transporter protein - GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 361.0
LYD1_k127_2553267_3 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 350.0
LYD1_k127_2553267_4 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000009149 248.0
LYD1_k127_2553267_5 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000000000000001117 156.0
LYD1_k127_2553267_6 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000002328 160.0
LYD1_k127_2553267_7 integral membrane protein - - - 0.000000000000000000000000000000000000002457 156.0
LYD1_k127_2553267_8 Putative cell wall binding repeat 2 K01448 - 3.5.1.28 0.000000000000005419 83.0
LYD1_k127_2553267_9 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000001005 70.0
LYD1_k127_2572825_0 fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 500.0
LYD1_k127_2572825_1 PFAM Aminotransferase class I and II K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004696 372.0
LYD1_k127_2582351_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 396.0
LYD1_k127_2582351_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021 334.0
LYD1_k127_2582351_2 Heparinase II/III N-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003856 348.0
LYD1_k127_2582351_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000001231 228.0
LYD1_k127_2582351_4 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000005709 136.0
LYD1_k127_2582351_5 beta-galactosidase activity K01190,K12308,K12373 - 3.2.1.23,3.2.1.52 0.000000000002297 78.0
LYD1_k127_2582351_6 Polysaccharide deacetylase - - - 0.00000000003045 69.0
LYD1_k127_2582351_7 copper radical oxidase K20929 - 1.2.3.15 0.000000803 60.0
LYD1_k127_2582558_0 PFAM Cytochrome c assembly protein K02198 - - 5.537e-203 651.0
LYD1_k127_2582558_1 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 403.0
LYD1_k127_2582558_10 - - - - 0.000000002708 69.0
LYD1_k127_2582558_11 - - - - 0.0006648 44.0
LYD1_k127_2582558_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 346.0
LYD1_k127_2582558_3 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000003653 227.0
LYD1_k127_2582558_4 ATPases associated with a variety of cellular activities K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000007252 200.0
LYD1_k127_2582558_5 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.00000000000000000000000000000000000000000000000000009096 196.0
LYD1_k127_2582558_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000005467 190.0
LYD1_k127_2582558_7 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000003986 111.0
LYD1_k127_2582558_8 His Kinase A (phosphoacceptor) domain - - - 0.00000000000001334 76.0
LYD1_k127_2582558_9 - - - - 0.0000000001235 70.0
LYD1_k127_2585868_0 (ABC) transporter K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 400.0
LYD1_k127_2585868_1 Bacterial sugar transferase - - - 0.0000000000004242 69.0
LYD1_k127_2591801_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 3.964e-307 960.0
LYD1_k127_2591801_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.315e-296 930.0
LYD1_k127_2591801_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 543.0
LYD1_k127_2591801_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 330.0
LYD1_k127_2591801_4 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000001142 237.0
LYD1_k127_2591801_5 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000003635 222.0
LYD1_k127_2591801_6 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000001255 123.0
LYD1_k127_2591801_7 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000001637 94.0
LYD1_k127_2602439_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 581.0
LYD1_k127_2602439_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 427.0
LYD1_k127_2602439_2 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 356.0
LYD1_k127_2602439_3 Methyltransferase FkbM family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 299.0
LYD1_k127_2602439_4 glycosyl transferase K03208 - - 0.00000000000000000000000000000000000001568 145.0
LYD1_k127_263985_0 COG0500 SAM-dependent methyltransferases K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 373.0
LYD1_k127_263985_1 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000195 186.0
LYD1_k127_263985_2 DGC domain - - - 0.00000000000000000000000000000009528 134.0
LYD1_k127_263985_3 DGC domain - - - 0.0000000000000000000000000000003612 127.0
LYD1_k127_263985_4 redox-active disulfide protein 2 - - - 0.000000000000000000000007341 103.0
LYD1_k127_263985_5 Regulatory protein MarR - - - 0.0000000000000000000001563 104.0
LYD1_k127_2664730_0 PFAM aldo keto reductase K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 424.0
LYD1_k127_2664730_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001244 276.0
LYD1_k127_2664730_2 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000002457 232.0
LYD1_k127_2664730_3 s1 p1 nuclease K05986 - 3.1.30.1 0.0000000000000000000000000000000000000000000000000000000000000009826 227.0
LYD1_k127_2664730_4 LUD domain - - - 0.000000000000000000000000000000000000000000000004119 182.0
LYD1_k127_2664730_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000001477 76.0
LYD1_k127_2664730_7 Tetratricopeptide repeat - - - 0.00000001116 68.0
LYD1_k127_2668286_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006288 584.0
LYD1_k127_2668286_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 344.0
LYD1_k127_2668286_2 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 327.0
LYD1_k127_2668286_3 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000007594 219.0
LYD1_k127_2668286_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000008396 147.0
LYD1_k127_2668286_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788,K14153 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3,2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000005001 148.0
LYD1_k127_2668286_6 Pilus assembly protein, PilO K02664 - - 0.000000000000000000001004 104.0
LYD1_k127_2668286_7 PFAM Fimbrial assembly family protein K02663 - - 0.000000002048 66.0
LYD1_k127_2668286_8 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000001612 51.0
LYD1_k127_2671801_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003166 555.0
LYD1_k127_2671801_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 364.0
LYD1_k127_2671801_2 HD domain - - - 0.000000000000000000000000000000000000000000000000000001098 201.0
LYD1_k127_2671801_3 Protein of unknown function (DUF2914) - - - 0.0000000000000000000000000001326 123.0
LYD1_k127_2671801_4 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000003684 115.0
LYD1_k127_2671801_5 Cold shock protein domain K03704 - - 0.000000000000000000000003132 104.0
LYD1_k127_2671801_6 - - - - 0.00000000000000000000001521 108.0
LYD1_k127_2671801_7 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.0000004949 53.0
LYD1_k127_2705700_0 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000026 250.0
LYD1_k127_2705700_1 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000008457 123.0
LYD1_k127_2705700_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000002946 122.0
LYD1_k127_2705700_3 - - - - 0.000000001413 66.0
LYD1_k127_2718018_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 7.837e-207 662.0
LYD1_k127_2718018_1 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 323.0
LYD1_k127_2718018_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001048 277.0
LYD1_k127_2718018_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000002634 127.0
LYD1_k127_2731182_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004248 275.0
LYD1_k127_2731182_1 - - - - 0.000000000000000000000000000000000000000000000000008684 190.0
LYD1_k127_2731182_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000886 177.0
LYD1_k127_2731182_3 response regulator - - - 0.0000000001956 64.0
LYD1_k127_2731182_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000002179 58.0
LYD1_k127_2752324_0 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000004411 136.0
LYD1_k127_2752324_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000009754 100.0
LYD1_k127_2752324_2 Conserved hypothetical protein 95 K02493 - 2.1.1.297 0.00000000000000004678 91.0
LYD1_k127_2752324_3 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000003105 54.0
LYD1_k127_2752324_4 PFAM YcfA-like protein - - - 0.000005121 49.0
LYD1_k127_2752926_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 472.0
LYD1_k127_2752926_1 Insulinase (Peptidase family M16) K07263 - - 0.0000002493 52.0
LYD1_k127_2767934_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 537.0
LYD1_k127_2767934_1 PFAM glycosyl transferase family 39 K07264 - 2.4.2.43 0.000000000000000000000000000000000000000000000000003809 201.0
LYD1_k127_2779169_0 Domain of unknown function (DUF1846) - - - 3.018e-264 820.0
LYD1_k127_2779169_1 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 582.0
LYD1_k127_2779169_2 phosphorelay sensor kinase activity K07709,K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 461.0
LYD1_k127_2779169_3 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 338.0
LYD1_k127_2779169_4 surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005432 297.0
LYD1_k127_2779169_5 Mycolic acid cyclopropane synthetase - - - 0.000000000000000000000000000000000000000000000004722 179.0
LYD1_k127_2779169_6 HD domain - - - 0.0000000000000000000000000000232 122.0
LYD1_k127_2779169_8 regulation of response to stimulus - - - 0.00000000002574 73.0
LYD1_k127_2784144_0 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008402 500.0
LYD1_k127_2784144_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000004443 119.0
LYD1_k127_2817300_0 TIGRFAM aminoacyl-histidine dipeptidase K01270 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 553.0
LYD1_k127_2817300_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 362.0
LYD1_k127_2817300_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000009615 189.0
LYD1_k127_2817300_3 - - - - 0.0000000000000000000000000000000000000009008 154.0
LYD1_k127_2817300_4 Methyltransferase domain K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000002437 141.0
LYD1_k127_2817300_5 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000006313 75.0
LYD1_k127_2817300_6 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.000003635 50.0
LYD1_k127_2826415_0 TIGRFAM RNA polymerase sigma factor, FliA WhiG family K02405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001448 265.0
LYD1_k127_2826415_1 bacterial-type flagellum organization K02282,K04562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005822 247.0
LYD1_k127_2826415_2 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.0000000000000000000000009309 108.0
LYD1_k127_2826415_3 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.00000000000001494 75.0
LYD1_k127_2826415_4 Flagellar motor switch protein K02416 GO:0005575,GO:0005623,GO:0005886,GO:0006935,GO:0008150,GO:0009288,GO:0009425,GO:0009605,GO:0016020,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0050896,GO:0050918,GO:0071944 - 0.000001518 56.0
LYD1_k127_2826415_5 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.00001745 50.0
LYD1_k127_2826415_6 Anti-sigma-28 factor, FlgM K02398 - - 0.000023 51.0
LYD1_k127_2846366_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006025 313.0
LYD1_k127_2846366_1 peptidylprolyl isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000001906 143.0
LYD1_k127_2846366_2 - - - - 0.0000000000000000000002858 98.0
LYD1_k127_2846366_3 Uncharacterised ArCR, COG2043 - - - 0.0000000000000000000003444 97.0
LYD1_k127_2846366_4 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000107 66.0
LYD1_k127_2846366_5 PFAM Rhodanese domain protein - - - 0.0000000003799 67.0
LYD1_k127_2863074_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 6.225e-262 820.0
LYD1_k127_2863074_1 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 306.0
LYD1_k127_2863074_10 - K04085 - - 0.00000000000000001189 91.0
LYD1_k127_2863074_11 thelarche K17081 - - 0.000000001946 61.0
LYD1_k127_2863074_12 DNA alkylation repair enzyme - - - 0.000000003148 62.0
LYD1_k127_2863074_13 Domain of unknown function (DUF4349) - - - 0.00004276 54.0
LYD1_k127_2863074_2 OsmC-like protein K00549,K04085 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000073 304.0
LYD1_k127_2863074_3 RNA pseudouridylate synthase K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000005899 242.0
LYD1_k127_2863074_4 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000001272 236.0
LYD1_k127_2863074_5 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000001904 223.0
LYD1_k127_2863074_6 PFAM DsrE family protein - - - 0.0000000000000000000000000000000000000000000000000000000001011 206.0
LYD1_k127_2863074_7 sequence-specific DNA binding K18830 - - 0.0000000000000000000000000000000000000000009925 161.0
LYD1_k127_2863074_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000001836 142.0
LYD1_k127_2863074_9 Helix-hairpin-helix motif - - - 0.0000000000000000000006957 102.0
LYD1_k127_2890076_0 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 579.0
LYD1_k127_2890076_1 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007279 398.0
LYD1_k127_2890076_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.00000000000951 68.0
LYD1_k127_2908982_0 Peptidylprolyl isomerase K01802,K03769,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000004439 197.0
LYD1_k127_2913370_0 Major facilitator superfamily K08191 - - 1.995e-202 638.0
LYD1_k127_2913370_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 524.0
LYD1_k127_2913370_2 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000002034 185.0
LYD1_k127_2913370_3 DNA-templated transcription, initiation K02405 - - 0.000006783 49.0
LYD1_k127_2913370_4 Tannase and feruloyl esterase - - - 0.0000184 51.0
LYD1_k127_2913370_5 Protein tyrosine kinase K12132 - 2.7.11.1 0.00002135 48.0
LYD1_k127_292092_0 - - - - 0.0000000000000000000000000000000000000000000000000000001444 204.0
LYD1_k127_292092_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000000000000000000000000000002975 181.0
LYD1_k127_292092_2 cell redox homeostasis - - - 0.00000000000000000000000002285 124.0
LYD1_k127_292092_3 heat shock protein binding - - - 0.000000000000000001688 95.0
LYD1_k127_2927134_0 oxidoreductase activity - - - 5.079e-258 817.0
LYD1_k127_2927134_1 Carboxypeptidase regulatory-like domain - - - 4.852e-233 736.0
LYD1_k127_2927134_2 SPFH Band 7 PHB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005748 355.0
LYD1_k127_2927134_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000619 190.0
LYD1_k127_2927134_4 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.00000000000000000000001143 105.0
LYD1_k127_2927134_5 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00239,K00244,K17363 - 1.3.5.1,1.3.5.4,1.3.99.33 0.000000006051 59.0
LYD1_k127_2948651_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K07306,K17050 - 1.7.5.1,1.8.5.3 0.0 1386.0
LYD1_k127_2948651_1 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 9.678e-229 724.0
LYD1_k127_2948651_2 PFAM Cytochrome b b6 domain - - - 1.756e-205 651.0
LYD1_k127_2948651_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 561.0
LYD1_k127_2948651_4 nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008257 536.0
LYD1_k127_2948651_5 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009895 287.0
LYD1_k127_2948651_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000002545 153.0
LYD1_k127_2948651_7 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000005989 120.0
LYD1_k127_2948651_8 chaperone-mediated protein complex assembly K00370,K00373,K17052 GO:0001666,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0036293,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0050896,GO:0051131,GO:0065003,GO:0070482,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 1.7.5.1 0.0000000000000000000000001535 117.0
LYD1_k127_2948651_9 chaperone-mediated protein complex assembly - - - 0.000000001874 68.0
LYD1_k127_2952521_0 Flotillin K07192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009293 545.0
LYD1_k127_2952521_1 Membrane protein implicated in regulation of membrane protease activity - - - 0.000000000000000000000000000000000000000000000005207 175.0
LYD1_k127_2973325_0 Radical SAM - - - 5.108e-208 666.0
LYD1_k127_2973325_1 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 535.0
LYD1_k127_2973325_2 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009101 431.0
LYD1_k127_2973325_3 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 379.0
LYD1_k127_2973325_4 Peptidase M1, membrane alanine aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 381.0
LYD1_k127_2973325_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001157 282.0
LYD1_k127_2973325_6 Phospholipid methyltransferase - - - 0.000000000000000000000000000009202 124.0
LYD1_k127_2973325_7 Domain of unknown function DUF87 - - - 0.000000001535 68.0
LYD1_k127_2973325_8 TonB-dependent Receptor Plug Domain - - - 0.00006073 57.0
LYD1_k127_2978994_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 1.05e-271 842.0
LYD1_k127_2978994_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000008402 190.0
LYD1_k127_2980453_0 TonB-dependent Receptor Plug Domain K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001392 268.0
LYD1_k127_2980453_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000002073 242.0
LYD1_k127_2980453_2 PFAM ABC transporter K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000001108 195.0
LYD1_k127_2980453_3 PFAM periplasmic binding protein K02016 - - 0.00000000000000000000000000000000000001204 151.0
LYD1_k127_2995808_0 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009115 264.0
LYD1_k127_2995808_1 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000000001251 191.0
LYD1_k127_3001810_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0 1765.0
LYD1_k127_3001810_1 response regulator, receiver K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 406.0
LYD1_k127_3001810_2 Pfam:N_methyl_2 - - - 0.00000000000001093 80.0
LYD1_k127_3001810_3 Histidine kinase - - - 0.0000002055 54.0
LYD1_k127_3007705_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000211 93.0
LYD1_k127_3007705_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.000000001488 67.0
LYD1_k127_3008060_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 371.0
LYD1_k127_3008060_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 299.0
LYD1_k127_3008060_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000001437 205.0
LYD1_k127_3008060_3 COG2104 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.000000001809 63.0
LYD1_k127_3008060_4 TIGRFAM FeS cluster assembly scaffold protein NifU K04488 - - 0.000001483 52.0
LYD1_k127_3010417_0 Mate efflux family protein K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 392.0
LYD1_k127_3010417_1 - - - - 0.00000000000000000000000000000000000000000000000295 181.0
LYD1_k127_3010417_2 - - - - 0.00000000000000000000000000000000009692 147.0
LYD1_k127_3022635_0 Belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 616.0
LYD1_k127_3022635_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 408.0
LYD1_k127_3022635_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001867 281.0
LYD1_k127_3022635_3 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000004217 263.0
LYD1_k127_3022635_4 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000116 129.0
LYD1_k127_3027066_0 type II secretion system protein E K02283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000762 534.0
LYD1_k127_3027066_1 Belongs to the GSP D family K02280 - - 0.00000000000000000000000000000000000000000000000000000001312 202.0
LYD1_k127_3027066_2 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000001633 206.0
LYD1_k127_3027066_3 PFAM type II secretion system K12511 - - 0.00000000000000000000000000000000000000000000000000000133 206.0
LYD1_k127_3027066_4 Flp pilus assembly protein, ATPase CpaE K02282 - - 0.000000000000000000000000000000001086 145.0
LYD1_k127_3027066_5 Uncharacterized ACR, COG1430 K09005 - - 0.000000000000000000000006651 108.0
LYD1_k127_3046622_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 538.0
LYD1_k127_3046622_1 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008146 273.0
LYD1_k127_3046622_2 Lipocalin-like domain K03098 - - 0.000000000000000000000000000000000000000000000000000002758 198.0
LYD1_k127_3067363_0 ATP synthesis coupled electron transport K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 468.0
LYD1_k127_3067363_1 quinone binding K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 347.0
LYD1_k127_3067363_2 Zn peptidase - - - 0.0000000000000000000000000000000000000000000000000000001608 212.0
LYD1_k127_3067363_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000008597 159.0
LYD1_k127_3067363_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000003827 114.0
LYD1_k127_3067363_5 RDD family - - - 0.0000009054 60.0
LYD1_k127_3074263_0 Belongs to the type-B carboxylesterase lipase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 385.0
LYD1_k127_3074263_1 Cupin 2, conserved barrel domain protein - - - 0.00000000000002488 79.0
LYD1_k127_3078335_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008323 376.0
LYD1_k127_3078335_1 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 348.0
LYD1_k127_3078335_2 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004867 249.0
LYD1_k127_3078335_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000006989 121.0
LYD1_k127_3078335_4 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000002519 121.0
LYD1_k127_3078335_5 Ribosomal L32p protein family K02911 - - 0.00000000000000000009651 89.0
LYD1_k127_3084861_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000585 442.0
LYD1_k127_3084861_1 PFAM peptidase S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005116 273.0
LYD1_k127_3084861_2 PFAM Histidine triad (HIT) protein K19710 - 2.7.7.53 0.0000000000000000000000000000000000000000000000000000301 192.0
LYD1_k127_3084861_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.00000000000000000000000000000007745 126.0
LYD1_k127_308540_0 Catalyzes the carbon skeleton rearrangement of L- glutamate to L-threo-3-methylaspartate ((2S,3S)-3- methylaspartate) K19268 - 5.4.99.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 501.0
LYD1_k127_308540_1 L-carnitine dehydratase bile acid-inducible protein F - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 301.0
LYD1_k127_308540_2 Catalyzes the carbon skeleton rearrangement of L- glutamate to L-threo-3-methylaspartate ((2S,3S)-3- methylaspartate) K01846 - 5.4.99.1 0.000000000000000000000000000000000000000000000000000000000585 204.0
LYD1_k127_308540_3 CoA-transferase family III - - - 0.0000000000000000000001312 102.0
LYD1_k127_3103991_0 peptidoglycan glycosyltransferase activity K03588,K05364,K05837 GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009605,GO:0009607,GO:0009987,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051301,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0075136 - 1.252e-288 923.0
LYD1_k127_3103991_1 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 393.0
LYD1_k127_3103991_2 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 355.0
LYD1_k127_3103991_3 - - - - 0.0000000000000000000000000000000000000000000000000000000003328 217.0
LYD1_k127_3103991_4 histone H2A K63-linked ubiquitination K01768,K03220,K10914 - 4.6.1.1 0.00000000000000000000000000000000000000000000004664 179.0
LYD1_k127_3103991_5 histone H2A K63-linked ubiquitination K02283 - - 0.00000000000000000000000000000000000001894 154.0
LYD1_k127_3103991_6 chain release factor K15034 - - 0.00000000000000000000000000000000000009215 148.0
LYD1_k127_3103991_7 TRAP transporter T-component - - - 0.000000000000000000000000000005751 123.0
LYD1_k127_3103991_8 Periplasmic or secreted lipoprotein - - - 0.00000001156 60.0
LYD1_k127_311689_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000003632 124.0
LYD1_k127_311689_1 - - - - 0.0001126 50.0
LYD1_k127_3133320_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000002839 132.0
LYD1_k127_3133320_1 PFAM Outer membrane efflux protein - - - 0.0000000000000000000339 100.0
LYD1_k127_3133320_2 adenosylhomocysteine nucleosidase activity K01243 - 3.2.2.9 0.000000000000225 81.0
LYD1_k127_3165215_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 557.0
LYD1_k127_3165215_1 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000001151 68.0
LYD1_k127_3198555_0 PFAM glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 428.0
LYD1_k127_3198555_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 337.0
LYD1_k127_3198555_2 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 295.0
LYD1_k127_3198555_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000005893 190.0
LYD1_k127_3198555_4 phosphatidylethanolamine metabolic process K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000003527 179.0
LYD1_k127_3198555_5 Involved in DNA repair and RecF pathway recombination K03474,K03584 GO:0008150,GO:0009314,GO:0009628,GO:0050896 2.6.99.2 0.000000000000000000000000000000224 136.0
LYD1_k127_3213211_0 Radical_SAM C-terminal domain K07139 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009314 358.0
LYD1_k127_3213211_1 Aldo/keto reductase family K07079 - - 0.000000000000000000000000000000000000000000000000355 184.0
LYD1_k127_3213211_2 Cupin 2, conserved barrel domain protein - - - 0.0000000002751 70.0
LYD1_k127_3221412_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 469.0
LYD1_k127_3221412_1 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285 465.0
LYD1_k127_3221412_10 SMART molybdopterin oxidoreductase Fe4S4 region, NADH ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein - - - 0.000000000000000000000000000000000000000000215 174.0
LYD1_k127_3221412_11 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000632 162.0
LYD1_k127_3221412_12 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000001539 124.0
LYD1_k127_3221412_13 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334,K18330 - 1.12.1.3,1.6.5.3 0.0000000000000000000000000000006344 137.0
LYD1_k127_3221412_14 Response regulator receiver domain - - - 0.00000000000000000000000000005716 130.0
LYD1_k127_3221412_15 protein secretion K03116 - - 0.00000000003403 64.0
LYD1_k127_3221412_16 cAMP biosynthetic process - - - 0.00004373 53.0
LYD1_k127_3221412_2 Amidohydrolase family K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 404.0
LYD1_k127_3221412_3 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 376.0
LYD1_k127_3221412_4 methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 336.0
LYD1_k127_3221412_5 NADH dehydrogenase K00335,K18331 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000789 320.0
LYD1_k127_3221412_6 methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007831 271.0
LYD1_k127_3221412_7 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000689 282.0
LYD1_k127_3221412_8 Protein of unknown function (DUF1385) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004465 269.0
LYD1_k127_3221412_9 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000003232 240.0
LYD1_k127_3225091_0 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 328.0
LYD1_k127_3225091_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000001231 164.0
LYD1_k127_3225091_2 helicase activity - - - 0.00000000000000000000000000000007888 128.0
LYD1_k127_322661_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 404.0
LYD1_k127_322661_1 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 310.0
LYD1_k127_322661_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000002763 243.0
LYD1_k127_322661_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000000000000000003386 147.0
LYD1_k127_322661_4 PFAM phosphatidate cytidylyltransferase K00981 - 2.7.7.41 0.0000000000000000000000000000000000008169 150.0
LYD1_k127_322661_5 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.0000000000000000000000000002256 121.0
LYD1_k127_322661_6 VanZ like family - - - 0.0000000000001349 78.0
LYD1_k127_322661_7 Membrane - - - 0.0008778 50.0
LYD1_k127_3232778_0 TIGRFAM argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003627 484.0
LYD1_k127_3232778_1 response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 460.0
LYD1_k127_3232778_2 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 GO:0005575,GO:0005623,GO:0005886,GO:0009288,GO:0009425,GO:0016020,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0071944 - 0.000000000002318 72.0
LYD1_k127_3242097_0 MFS/sugar transport protein - - - 2.288e-241 754.0
LYD1_k127_3242097_1 cystathionine gamma-synthase activity K01739,K01758,K01760 - 2.5.1.48,4.4.1.1,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 497.0
LYD1_k127_3242097_2 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009333,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006703 462.0
LYD1_k127_3242097_3 Protein of unknown function DUF47 K02039,K07220 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000000000611 224.0
LYD1_k127_3242097_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000009129 154.0
LYD1_k127_3242097_5 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000003363 160.0
LYD1_k127_3242097_6 Alcohol dehydrogenase GroES-like domain K00004,K00008,K00098 - 1.1.1.14,1.1.1.264,1.1.1.303,1.1.1.4 0.0000000000000002266 81.0
LYD1_k127_3242097_7 Domain of Unknown Function (DUF350) - - - 0.0000314 48.0
LYD1_k127_324678_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 4.983e-227 710.0
LYD1_k127_324678_1 radical SAM K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 513.0
LYD1_k127_324678_10 Cupin 2, conserved barrel domain protein - - - 0.00000003709 61.0
LYD1_k127_324678_11 - - - - 0.000001239 59.0
LYD1_k127_324678_13 Putative zinc-finger - - - 0.0002024 51.0
LYD1_k127_324678_2 Aldo/keto reductase family K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 310.0
LYD1_k127_324678_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001448 247.0
LYD1_k127_324678_4 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000002615 203.0
LYD1_k127_324678_5 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000007506 187.0
LYD1_k127_324678_6 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000003046 143.0
LYD1_k127_324678_7 Putative adhesin - - - 0.0000000000000000000000000000002746 141.0
LYD1_k127_324678_8 membrane K11622 - - 0.0000000000000000000002801 107.0
LYD1_k127_324678_9 - - - - 0.00000000000000000005756 98.0
LYD1_k127_3251922_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1244.0
LYD1_k127_3251922_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000002024 178.0
LYD1_k127_3251922_2 Putative heavy-metal chelation K09138 - - 0.000000000000000000000000000000000000000000661 164.0
LYD1_k127_3251922_3 Outer membrane efflux protein - - - 0.000000000000000000000368 102.0
LYD1_k127_3251922_4 Protein of unknown function (DUF2892) - - - 0.0000000000000000000151 92.0
LYD1_k127_3251922_5 Universal stress protein family - - - 0.0000000000001234 81.0
LYD1_k127_3255541_0 thiolester hydrolase activity K01179,K06889,K10773,K15853 - 3.2.1.4,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003202 360.0
LYD1_k127_3255541_1 GlcNAc-PI de-N-acetylase K22135 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001715 274.0
LYD1_k127_3255541_2 amino acid K03294,K16238 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008747 258.0
LYD1_k127_3255541_3 PFAM Cold-shock K03704 - - 0.000000000000000000000006778 102.0
LYD1_k127_3255541_4 Protein conserved in bacteria - - - 0.00002871 54.0
LYD1_k127_3258613_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 557.0
LYD1_k127_3258613_1 homoserine kinase K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 432.0
LYD1_k127_3258613_2 Cupin 2, conserved barrel domain protein - - - 0.0000000005633 67.0
LYD1_k127_328842_0 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002741 289.0
LYD1_k127_328842_1 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001161 293.0
LYD1_k127_328842_2 Glucose inhibited division protein A - - - 0.00000000000000000000000000000002697 134.0
LYD1_k127_330519_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K05587,K18331 - 1.12.1.3,1.6.5.3 1.099e-258 814.0
LYD1_k127_330519_1 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000375 157.0
LYD1_k127_330519_2 ATP synthesis coupled electron transport K00123,K00336 - 1.17.1.9,1.6.5.3 0.000000000000000000000003352 106.0
LYD1_k127_330519_3 Tannase and feruloyl esterase K21105 - 3.1.1.102 0.00000000000000000001236 98.0
LYD1_k127_330519_4 Molybdopterin oxidoreductase Fe4S4 region K00336,K05299 - 1.17.1.10,1.6.5.3 0.000000007071 57.0
LYD1_k127_3320964_0 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 506.0
LYD1_k127_3320964_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006228 471.0
LYD1_k127_3320964_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000006769 149.0
LYD1_k127_3320964_3 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000001584 138.0
LYD1_k127_3320964_4 S-layer homology domain - - - 0.000001754 58.0
LYD1_k127_3326653_0 Histidine kinase K03412,K03413,K13924 - 2.1.1.80,3.1.1.61,3.5.1.44 3.927e-297 953.0
LYD1_k127_3326653_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 529.0
LYD1_k127_3326653_2 response regulator K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004291 246.0
LYD1_k127_3326653_3 Protein of unknown function (DUF3309) - - - 0.000000000000005704 75.0
LYD1_k127_3326653_4 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000001848 79.0
LYD1_k127_3328611_0 Anaerobic sulfatase maturase K06871 - - 0.000000000000000000000000000000000000000000002615 177.0
LYD1_k127_3328611_1 4Fe-4S single cluster domain - - - 0.00000000000002608 79.0
LYD1_k127_333047_0 Nucleotidyl transferase K00966 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 355.0
LYD1_k127_333047_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000004826 140.0
LYD1_k127_333047_2 Ecdysteroid kinase K07102 - 2.7.1.221 0.0000000000000000000003889 99.0
LYD1_k127_3338801_0 FMN-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000111 257.0
LYD1_k127_3338801_1 - K03616 - - 0.000000000000000000000000000000000003416 144.0
LYD1_k127_3338801_2 amine dehydrogenase activity - - - 0.000000000000000000000000000005922 129.0
LYD1_k127_3344361_0 Uncharacterized protein conserved in bacteria (DUF2334) - - - 0.00000000000000000000000000000000000000000000000000000000000000001192 246.0
LYD1_k127_3348277_0 Belongs to the type-B carboxylesterase lipase family K03929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003105 275.0
LYD1_k127_3350005_0 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009909 446.0
LYD1_k127_3350005_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001662 233.0
LYD1_k127_3350005_2 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000001334 182.0
LYD1_k127_3350005_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000006015 162.0
LYD1_k127_335750_0 Glutamine synthetase type III K01915 - 6.3.1.2 0.0 1057.0
LYD1_k127_335750_1 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 0.0 1039.0
LYD1_k127_3357671_0 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001409 288.0
LYD1_k127_3357671_1 Major facilitator superfamily - - - 0.00000000000000000000001654 114.0
LYD1_k127_3375804_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972,K10754 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000414 629.0
LYD1_k127_3375804_1 glycosyl transferase family 2 K00720 - 2.4.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 430.0
LYD1_k127_3375804_10 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.0000005753 52.0
LYD1_k127_3375804_11 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00001288 48.0
LYD1_k127_3375804_2 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 395.0
LYD1_k127_3375804_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 379.0
LYD1_k127_3375804_4 YdjC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002599 282.0
LYD1_k127_3375804_5 TIGRFAM MazG family protein K02428,K02499 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007469 278.0
LYD1_k127_3375804_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003964 286.0
LYD1_k127_3375804_7 Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate K03473 - 1.1.1.290 0.000000000000000000000000000000000000000000000000000000000000000000000000000003268 277.0
LYD1_k127_3375804_8 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000005166 216.0
LYD1_k127_3375804_9 EamA-like transporter family - - - 0.0000000000000000001967 92.0
LYD1_k127_3400434_0 Bacterial DNA polymerase III alpha subunit K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 1e-323 1021.0
LYD1_k127_3400434_1 impB/mucB/samB family K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000004318 261.0
LYD1_k127_3400434_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000007693 181.0
LYD1_k127_340113_0 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 409.0
LYD1_k127_340113_1 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 396.0
LYD1_k127_340113_2 TIGRFAM cytochrome C family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 383.0
LYD1_k127_340113_3 PBS lyase HEAT domain protein repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000001938 235.0
LYD1_k127_3422119_0 - - - - 0.0000000000000000000000000000005464 123.0
LYD1_k127_3422119_1 Major facilitator Superfamily - - - 0.000000000000000000000008585 109.0
LYD1_k127_3422119_2 PFAM plasmid K06218 - - 0.00000000000000004062 83.0
LYD1_k127_3422119_3 overlaps another CDS with the same product name - - - 0.00000002138 66.0
LYD1_k127_3424601_0 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 436.0
LYD1_k127_3425470_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 383.0
LYD1_k127_3425470_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008556 244.0
LYD1_k127_3425470_2 TIGRFAM molybdenum cofactor synthesis - - - 0.00000000000000000000000000000000000000000000009106 173.0
LYD1_k127_3425470_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000002641 108.0
LYD1_k127_3427453_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 545.0
LYD1_k127_3427453_1 UDP-N-acetylglucosamine 2-epimerase K01791,K13019 - 5.1.3.14,5.1.3.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 447.0
LYD1_k127_3427453_2 Oxidoreductase family, C-terminal alpha/beta domain K13016 - 1.1.1.335 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 410.0
LYD1_k127_3427453_3 -O-antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003456 295.0
LYD1_k127_3427453_4 geranylgeranyl reductase activity K06444,K17830 - 1.3.1.101,1.3.7.11,5.5.1.18 0.0000000000000000000000000000000000000000000004931 181.0
LYD1_k127_3427453_5 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000009313 153.0
LYD1_k127_3427453_6 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000000001583 106.0
LYD1_k127_3427453_7 histone H2A K63-linked ubiquitination K21832 - - 0.000000000002594 81.0
LYD1_k127_3427453_8 Protein of unknown function (DUF1211) - - - 0.000000000167 64.0
LYD1_k127_3439146_0 Sigma-54 interaction domain K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 322.0
LYD1_k127_3439146_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001577 246.0
LYD1_k127_3439146_2 FtsZ-dependent cytokinesis - - - 0.0000000000000000000000000000000000000000000000000000000000000001376 241.0
LYD1_k127_3439146_3 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000001927 193.0
LYD1_k127_3439146_4 response regulator K07776 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009405,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0031323,GO:0031326,GO:0044419,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0080090,GO:0080134,GO:0097159,GO:1901363,GO:1902882,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000005628 76.0
LYD1_k127_3449006_0 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 418.0
LYD1_k127_3449006_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005457 413.0
LYD1_k127_3449006_10 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000000001131 242.0
LYD1_k127_3449006_11 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000001321 146.0
LYD1_k127_3449006_13 - - - - 0.00000000000000003529 96.0
LYD1_k127_3449006_14 4Fe-4S dicluster domain - - - 0.000000000000003439 80.0
LYD1_k127_3449006_2 succinate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 433.0
LYD1_k127_3449006_3 Pfam:Kce K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 394.0
LYD1_k127_3449006_4 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 372.0
LYD1_k127_3449006_5 Enoyl-(Acyl carrier protein) reductase K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 359.0
LYD1_k127_3449006_6 Coenzyme A transferase K01029,K01035 - 2.8.3.5,2.8.3.8,2.8.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 323.0
LYD1_k127_3449006_7 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 327.0
LYD1_k127_3449006_8 Coenzyme A transferase K01034 - 2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 286.0
LYD1_k127_3449006_9 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001791 275.0
LYD1_k127_3449207_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 559.0
LYD1_k127_3449207_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000004067 238.0
LYD1_k127_3449207_2 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000001838 160.0
LYD1_k127_3449207_3 von Willebrand factor, type A - - - 0.00000000000000000000000000000001578 139.0
LYD1_k127_3449207_4 Domain of unknown function (DUF1844) - - - 0.000000000000000009947 88.0
LYD1_k127_3449207_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000002589 62.0
LYD1_k127_3449748_0 surface antigen variable number - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 381.0
LYD1_k127_3449748_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 333.0
LYD1_k127_3449748_2 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000002017 164.0
LYD1_k127_3449748_3 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.000000000000001428 86.0
LYD1_k127_3455846_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 569.0
LYD1_k127_3455846_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000005267 229.0
LYD1_k127_3455846_2 Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000000000000000000000000000001243 209.0
LYD1_k127_3459176_0 PFAM Prenyltransferase squalene oxidase K06045 - 4.2.1.129,5.4.99.17 4.361e-200 644.0
LYD1_k127_3459176_1 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 607.0
LYD1_k127_3459176_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 465.0
LYD1_k127_3459176_3 PFAM Alcohol dehydrogenase K00008 - 1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 416.0
LYD1_k127_3459176_4 PFAM Alcohol dehydrogenase K00008 - 1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 392.0
LYD1_k127_3459176_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 331.0
LYD1_k127_3459176_6 ergosterol biosynthetic process K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002439 280.0
LYD1_k127_3459176_7 Belongs to the DapB family K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000006362 235.0
LYD1_k127_3459176_8 epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000003706 105.0
LYD1_k127_3459176_9 PFAM Uncharacterised conserved protein UCP033563 - - - 0.0000000000002549 72.0
LYD1_k127_3464345_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 5.644e-236 749.0
LYD1_k127_3464484_0 nitric oxide reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 489.0
LYD1_k127_3464484_1 Glucose inhibited division protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003023 284.0
LYD1_k127_3464484_10 Uncharacterised ArCR, COG2043 - - - 0.000002422 58.0
LYD1_k127_3464484_2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000009644 188.0
LYD1_k127_3464484_3 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000002253 152.0
LYD1_k127_3464484_4 Hydrolase - - - 0.000000000000000000000000000003086 123.0
LYD1_k127_3464484_5 - - - - 0.00000000000000000001152 96.0
LYD1_k127_3464484_6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000005987 104.0
LYD1_k127_3464484_7 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000000002184 92.0
LYD1_k127_3464484_8 polysaccharide catabolic process K01179,K05991 - 3.2.1.123,3.2.1.4 0.00000000000267 72.0
LYD1_k127_3464484_9 Rhodanese domain protein - - - 0.00000002558 61.0
LYD1_k127_3468093_0 Transglycosylase - - - 3.262e-198 647.0
LYD1_k127_3468093_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000001864 224.0
LYD1_k127_3468093_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000007241 161.0
LYD1_k127_3482606_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 462.0
LYD1_k127_3482606_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.0000000000006601 74.0
LYD1_k127_3486440_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 424.0
LYD1_k127_3486440_1 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001736 271.0
LYD1_k127_3486440_2 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000004069 243.0
LYD1_k127_3486440_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000001172 187.0
LYD1_k127_3486440_4 MlaD protein K02067 - - 0.00000006996 62.0
LYD1_k127_3502116_0 NAD binding K00333,K13378 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 485.0
LYD1_k127_3502116_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 396.0
LYD1_k127_3502116_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000001717 118.0
LYD1_k127_3502116_11 PFAM AhpC TSA family - - - 0.0000000000000000001117 98.0
LYD1_k127_3502116_2 e3 binding domain K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 400.0
LYD1_k127_3502116_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000002786 246.0
LYD1_k127_3502116_4 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000001776 179.0
LYD1_k127_3502116_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.00000000000000000000000000000000000000000002045 166.0
LYD1_k127_3502116_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000002635 154.0
LYD1_k127_3502116_7 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.00000000000000000000000000000000000003105 151.0
LYD1_k127_3502116_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000008361 142.0
LYD1_k127_3502116_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000003149 143.0
LYD1_k127_3513124_0 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 439.0
LYD1_k127_3513124_1 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004118 323.0
LYD1_k127_3513124_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588,K01945 - 5.4.99.18,6.3.4.13 0.0000000000000000000000000000000000000000000000008352 180.0
LYD1_k127_3513124_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000003624 170.0
LYD1_k127_3513124_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000000007449 123.0
LYD1_k127_3513124_5 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000006341 111.0
LYD1_k127_3513124_6 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000003163 86.0
LYD1_k127_3515435_0 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 379.0
LYD1_k127_3515435_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 299.0
LYD1_k127_3515435_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004086 285.0
LYD1_k127_3515435_3 Oxidoreductase NAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000002305 103.0
LYD1_k127_352160_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 540.0
LYD1_k127_352160_1 helix_turn_helix, arabinose operon control protein K13653 - - 0.000000000000000000000000000000000000000000000000000000001339 211.0
LYD1_k127_352160_2 response to heat K07090 - - 0.00000000000000000000000000000001105 131.0
LYD1_k127_352160_3 - - - - 0.0000000000000000000258 98.0
LYD1_k127_3523130_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006876 404.0
LYD1_k127_3523130_1 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 349.0
LYD1_k127_3523130_2 Domain of unknown function (DUF4160) - - - 0.00000000000000002285 82.0
LYD1_k127_3523130_3 Protein of unknown function DUF86 K07075 - - 0.0000000000000002396 85.0
LYD1_k127_3523130_4 chelatase subunit ChlI K07391 - - 0.000000000000001224 77.0
LYD1_k127_3523130_5 Protein of unknown function (DUF2442) - - - 0.000000000002451 70.0
LYD1_k127_3524145_0 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613 531.0
LYD1_k127_3524145_1 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 304.0
LYD1_k127_3524145_10 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.00004876 49.0
LYD1_k127_3524145_2 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000000000000000000002136 221.0
LYD1_k127_3524145_3 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000102 204.0
LYD1_k127_3524145_4 Haloacid dehalogenase domain protein hydrolase - - - 0.000000000000000000000000000000000000000000000007075 176.0
LYD1_k127_3524145_5 Met-10+ like-protein - - - 0.000000000000000000000000000000000000000000001572 172.0
LYD1_k127_3524145_6 - - - - 0.0000000000000000000000000000000000000000001005 166.0
LYD1_k127_3524145_7 ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA - - - 0.0000000000000000000000000000000000001464 150.0
LYD1_k127_3524145_8 hyperosmotic response - - - 0.0000000000000000000000000000000006213 138.0
LYD1_k127_3524145_9 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000547 114.0
LYD1_k127_3532348_1 metallopeptidase activity - - - 0.000000000000000005718 99.0
LYD1_k127_3532348_2 PFAM Lytic transglycosylase catalytic - - - 0.00000000000002373 82.0
LYD1_k127_3545263_0 Bacterial virulence protein (VirJ) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 508.0
LYD1_k127_3545263_1 Uncharacterised conserved protein (DUF2156) K04567,K14205 - 2.3.2.3,6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 423.0
LYD1_k127_3545263_2 alpha-L-rhamnosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 319.0
LYD1_k127_3545263_3 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004483 249.0
LYD1_k127_3545263_4 Lysylphosphatidylglycerol synthase TM region - - - 0.0000000000000000000000000000000000000000000000000007703 197.0
LYD1_k127_3545263_5 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000000000000002164 117.0
LYD1_k127_3551045_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 477.0
LYD1_k127_3551045_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 303.0
LYD1_k127_3551045_2 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002469 276.0
LYD1_k127_3552261_0 ornithine cyclodeaminase activity K01750,K19244 - 1.4.1.1,4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 292.0
LYD1_k127_3552261_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000008971 147.0
LYD1_k127_3552261_2 Uncharacterised conserved protein (DUF2156) K01163 - - 0.0000000000000000000000000000000001968 144.0
LYD1_k127_3552261_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000001449 83.0
LYD1_k127_355656_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 518.0
LYD1_k127_355656_1 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 295.0
LYD1_k127_355656_2 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008668 285.0
LYD1_k127_355656_3 - - - - 0.0000000000000000004173 92.0
LYD1_k127_355656_4 TIGRFAM drug resistance transporter, EmrB QacA subfamily K03446 - - 0.00000000000002369 74.0
LYD1_k127_3572055_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 500.0
LYD1_k127_3572055_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002035 278.0
LYD1_k127_3572055_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000001658 158.0
LYD1_k127_3572055_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000001942 171.0
LYD1_k127_3572055_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000009947 129.0
LYD1_k127_3572055_5 Belongs to the UPF0109 family K06960 - - 0.000000000000000000000000000138 116.0
LYD1_k127_3572055_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000001728 102.0
LYD1_k127_3575554_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 490.0
LYD1_k127_3575554_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 470.0
LYD1_k127_3575554_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 439.0
LYD1_k127_3575554_3 Molybdate transporter of MFS superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 422.0
LYD1_k127_3575554_4 Ketoacyl-synthetase C-terminal extension - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002342 280.0
LYD1_k127_3575554_5 4'-phosphopantetheinyl transferase superfamily K06133 - - 0.000000000000000000000000000000000001257 148.0
LYD1_k127_3575554_6 succinate dehydrogenase - - - 0.000000000000005166 83.0
LYD1_k127_3575554_7 - - - - 0.00000606 50.0
LYD1_k127_3576080_0 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 527.0
LYD1_k127_3576080_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 472.0
LYD1_k127_3576080_2 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791,K02851 - 2.7.8.33,2.7.8.35,5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 419.0
LYD1_k127_3576080_3 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 382.0
LYD1_k127_3576080_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 306.0
LYD1_k127_3583883_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 402.0
LYD1_k127_3583883_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000705 393.0
LYD1_k127_3583883_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595,K06883 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001557 278.0
LYD1_k127_3583883_3 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000001805 219.0
LYD1_k127_3583883_4 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000227 197.0
LYD1_k127_3583883_5 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000009353 147.0
LYD1_k127_359617_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0071704,GO:0140096,GO:1901564 5.2.1.8 0.0000000000000000000000000000000000000000000000000001027 192.0
LYD1_k127_359617_1 A G-specific adenine glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000005486 194.0
LYD1_k127_359617_2 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000000002381 113.0
LYD1_k127_359617_3 Anti-sigma W factor - - - 0.0002962 49.0
LYD1_k127_3606407_0 Conserved carboxylase domain K01571 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 403.0
LYD1_k127_3606407_1 Uncharacterised protein family (UPF0261) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001455 257.0
LYD1_k127_3606407_2 - - - - 0.0000009329 60.0
LYD1_k127_3606407_3 Putative zinc-finger - - - 0.0002086 51.0
LYD1_k127_3606928_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 444.0
LYD1_k127_3606928_1 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003918 260.0
LYD1_k127_3608585_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 565.0
LYD1_k127_3608585_1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141,K19190 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019720,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061602,GO:0070567,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902759,GO:1902760 1.1.1.328,2.7.7.76 0.000000000000000004569 89.0
LYD1_k127_362141_0 Glycosyl hydrolase family 57 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 529.0
LYD1_k127_362141_1 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000739 351.0
LYD1_k127_362141_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 331.0
LYD1_k127_362141_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K04764 - - 0.0000000000000000000000001206 108.0
LYD1_k127_362141_4 ABC-2 family transporter protein K01992 - - 0.0002999 44.0
LYD1_k127_3626995_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 5.418e-196 625.0
LYD1_k127_3626995_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 619.0
LYD1_k127_3626995_10 PFAM thioesterase superfamily K07107 - - 0.0000000000000000000000000000000000004246 145.0
LYD1_k127_3626995_11 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000008071 140.0
LYD1_k127_3626995_12 Dodecin K09165 - - 0.000000000000000000000007249 102.0
LYD1_k127_3626995_13 amino acid K03294 - - 0.00000000000000000000007953 98.0
LYD1_k127_3626995_14 Protein of unknown function (DUF1573) - - - 0.00000000003727 70.0
LYD1_k127_3626995_2 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 590.0
LYD1_k127_3626995_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 565.0
LYD1_k127_3626995_4 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 441.0
LYD1_k127_3626995_5 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 420.0
LYD1_k127_3626995_6 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 378.0
LYD1_k127_3626995_7 tRNA m6t6A37 methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000002123 215.0
LYD1_k127_3626995_8 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000001166 179.0
LYD1_k127_3626995_9 Isochorismatase family - - - 0.00000000000000000000000000000000000000000001398 168.0
LYD1_k127_3631133_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007766 425.0
LYD1_k127_3631133_1 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008373 411.0
LYD1_k127_3631133_2 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 347.0
LYD1_k127_3631133_3 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004717 297.0
LYD1_k127_3631133_4 Sulfatase K01130 - 3.1.6.1 0.0001351 46.0
LYD1_k127_363221_0 Heat shock 70 kDa protein K04043 - - 9.373e-219 689.0
LYD1_k127_363221_1 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 297.0
LYD1_k127_363221_2 HrcA protein C terminal domain K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009457 264.0
LYD1_k127_363221_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000001733 133.0
LYD1_k127_3635422_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005131 357.0
LYD1_k127_3635422_1 Elongation factor G, domain IV K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001555 249.0
LYD1_k127_3635422_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000005173 227.0
LYD1_k127_3636283_0 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000005737 190.0
LYD1_k127_3636283_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000007205 116.0
LYD1_k127_3636283_2 PFAM Radical SAM K06937 - - 0.00000000000000000000002285 102.0
LYD1_k127_3637680_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 595.0
LYD1_k127_3637680_1 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.0000000000000000000000000000000000000007592 163.0
LYD1_k127_3637680_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000002325 132.0
LYD1_k127_3637680_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000003246 119.0
LYD1_k127_3639508_0 Large extracellular alpha-helical protein - - - 0.0 1827.0
LYD1_k127_3639508_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000003104 216.0
LYD1_k127_3639508_2 Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000007601 102.0
LYD1_k127_3639508_4 Large extracellular alpha-helical protein - - - 0.00000000000008041 72.0
LYD1_k127_3639508_5 SnoaL-like domain - - - 0.00000000004263 70.0
LYD1_k127_3639508_6 TonB dependent receptor - - - 0.0009394 52.0
LYD1_k127_3642064_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 284.0
LYD1_k127_3642064_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.0000000000000000000000000000000000000000000000000003535 190.0
LYD1_k127_3642064_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000004033 103.0
LYD1_k127_3642064_3 Ribosomal protein L35 K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000002947 69.0
LYD1_k127_3645106_0 PFAM tRNA synthetase, class II (G, H, P and S) K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 429.0
LYD1_k127_3645106_1 pfkB family carbohydrate kinase K00852,K00856 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004001,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032559,GO:0032560,GO:0032561,GO:0032567,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 391.0
LYD1_k127_3645106_2 acyl-CoA dehydrogenase K18244 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 385.0
LYD1_k127_3645106_3 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006695 319.0
LYD1_k127_3645106_4 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 296.0
LYD1_k127_3645106_5 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002754 259.0
LYD1_k127_3645106_6 Lipid A biosynthesis K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000001339 215.0
LYD1_k127_3645106_7 TPR repeat - - - 0.00000000000000000000001521 115.0
LYD1_k127_3649727_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000001709 252.0
LYD1_k127_3649727_1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000002961 66.0
LYD1_k127_3657599_0 Peptidoglycan-binding domain 1 protein K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 521.0
LYD1_k127_3657599_1 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 353.0
LYD1_k127_3657599_10 Protein of unknown function (DUF805) - - - 0.0005072 51.0
LYD1_k127_3657599_2 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 304.0
LYD1_k127_3657599_3 Fungal trichothecene efflux pump (TRI12) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 304.0
LYD1_k127_3657599_4 spore germination - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000007396 244.0
LYD1_k127_3657599_5 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000002616 239.0
LYD1_k127_3657599_6 Predicted metal-binding protein (DUF2284) - - - 0.0000000000000000000000000000000000000000000000000000004788 199.0
LYD1_k127_3657599_7 membrane K02451,K03832 - - 0.000000000000000001013 94.0
LYD1_k127_3657599_8 Protein of unknown function DUF262 - - - 0.0000000000000856 73.0
LYD1_k127_3657599_9 amine dehydrogenase activity - - - 0.00006061 55.0
LYD1_k127_3679992_0 secondary active sulfate transmembrane transporter activity K06901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 518.0
LYD1_k127_3679992_2 EF hand - - - 0.00008575 52.0
LYD1_k127_3679992_3 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 GO:0003674,GO:0003824,GO:0004462,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006081,GO:0006082,GO:0006089,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009438,GO:0009628,GO:0009636,GO:0009987,GO:0016829,GO:0016846,GO:0019243,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042180,GO:0042182,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046185,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0051596,GO:0051716,GO:0061727,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0097237,GO:0098754,GO:0104004,GO:1901564,GO:1901575,GO:1901615,GO:1990748 4.4.1.5 0.0005755 51.0
LYD1_k127_369325_0 succinate dehydrogenase K00394 - 1.8.99.2 5.367e-198 638.0
LYD1_k127_369325_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 593.0
LYD1_k127_369325_2 Belongs to the peptidase S11 family K07258,K07262 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 310.0
LYD1_k127_369325_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600,K00605,K18847 - 2.1.2.1,2.1.2.10,2.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 294.0
LYD1_k127_369325_4 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000004674 258.0
LYD1_k127_369325_5 Aminoacyl-tRNA editing domain K03976 - - 0.0000000000000000000000000000000000000000000000000000001205 198.0
LYD1_k127_369325_6 SMART PAS domain containing protein - - - 0.000000000000000000000000000000000000000000000000008873 202.0
LYD1_k127_369325_7 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000013 142.0
LYD1_k127_369325_8 phosphorelay signal transduction system - - - 0.000000000000000000035 95.0
LYD1_k127_369325_9 (Hpt) domain - - - 0.000001013 56.0
LYD1_k127_3693810_0 extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 390.0
LYD1_k127_3693810_1 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000003975 221.0
LYD1_k127_3693810_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000019 203.0
LYD1_k127_3693810_3 iron-sulfur cluster assembly K07400 - - 0.0000000000000000000000000000000000000007557 158.0
LYD1_k127_3693810_4 Bacterial DNA-binding protein K03530 - - 0.000000000000000000000000000004592 121.0
LYD1_k127_3693810_5 Serine threonine protein kinase K08884,K12132 GO:0002237,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009847,GO:0009987,GO:0010033,GO:0010243,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0032494,GO:0032502,GO:0036211,GO:0042221,GO:0042834,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071224,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0071944,GO:0097367,GO:0140096,GO:1901564,GO:1901698,GO:1901699,GO:1901700,GO:1901701 2.7.11.1 0.0000000000000000002473 96.0
LYD1_k127_3693810_6 beta-acetyl hexosaminidase like K12373 - 3.2.1.52 0.0000000000000000004371 96.0
LYD1_k127_371272_0 Type III restriction enzyme, res subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 298.0
LYD1_k127_371272_1 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000001883 233.0
LYD1_k127_371272_2 COGs COG3372 conserved K09744 - - 0.00000000000000000000000000000004931 139.0
LYD1_k127_371272_3 COG0433 Predicted ATPase - - - 0.00000000000000000000000000007631 118.0
LYD1_k127_371272_4 Domain of unknown function (DUF4870) - - - 0.000000000000000000000004738 108.0
LYD1_k127_371272_5 Protein of unknown function (DUF3788) - - - 0.0000000000000000001412 94.0
LYD1_k127_371272_6 Acetyltransferase, gnat family - - - 0.000000001465 64.0
LYD1_k127_3720033_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009694 283.0
LYD1_k127_3720033_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000004244 173.0
LYD1_k127_3720033_2 Tetratricopeptide repeat - - - 0.00000000000005404 85.0
LYD1_k127_3758325_0 Radical SAM superfamily K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009042 458.0
LYD1_k127_3758325_1 protein methyltransferase activity K11434,K15984,K20421 - 2.1.1.242,2.1.1.303,2.1.1.319 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 295.0
LYD1_k127_3758325_2 Domain of unknown function (DUF4162) K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000119 265.0
LYD1_k127_3758325_3 phosphonoacetaldehyde hydrolase activity - GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008801,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016853,GO:0016866,GO:0016868,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872 - 0.000000000000000000000000000000000000000000000000000000000000567 215.0
LYD1_k127_3758325_4 Inositol monophosphatase K01092,K05602,K18649 GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008934,GO:0009058,GO:0009987,GO:0010125,GO:0010126,GO:0016020,GO:0016053,GO:0016137,GO:0016138,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0052745,GO:0052803,GO:0052834,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659 3.1.3.15,3.1.3.25,3.1.3.93 0.00000000000000000000000000000000000000000000000000006233 198.0
LYD1_k127_3758325_5 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000002054 193.0
LYD1_k127_3758325_6 NifU-like N terminal domain K04488 - - 0.0000000000000000000000000001367 118.0
LYD1_k127_3758325_7 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000507 129.0
LYD1_k127_3758325_8 conserved protein (DUF2196) - - - 0.00000000000000000000006779 100.0
LYD1_k127_3758325_9 - - - - 0.000001989 54.0
LYD1_k127_3772349_0 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 0.0 1112.0
LYD1_k127_3772349_1 Myo-inositol-1-phosphate synthase, GAPDH domain protein K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 296.0
LYD1_k127_3772349_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000001989 50.0
LYD1_k127_3774486_0 Domain of unknown function (DUF2088) - - - 3.587e-194 614.0
LYD1_k127_3774486_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 603.0
LYD1_k127_3774486_2 tagaturonate epimerase K21619 - 5.1.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 448.0
LYD1_k127_3787768_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 589.0
LYD1_k127_3787768_1 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 461.0
LYD1_k127_3787768_10 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000001191 174.0
LYD1_k127_3787768_11 Outer membrane lipoprotein-sorting protein - - - 0.0000000000000000000000000000000000000000002276 168.0
LYD1_k127_3787768_13 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000004179 113.0
LYD1_k127_3787768_14 4-amino-4-deoxy-L-arabinose transferase activity K13687 - - 0.000007297 59.0
LYD1_k127_3787768_2 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 397.0
LYD1_k127_3787768_3 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 382.0
LYD1_k127_3787768_4 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 350.0
LYD1_k127_3787768_5 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 301.0
LYD1_k127_3787768_6 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008122 269.0
LYD1_k127_3787768_7 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000005002 242.0
LYD1_k127_3787768_8 MFS/sugar transport protein - - - 0.00000000000000000000000000000000000000000000000000000000000002228 231.0
LYD1_k127_3787768_9 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000001274 216.0
LYD1_k127_3789099_0 Belongs to the RimK family K05827,K05844 - 6.3.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 306.0
LYD1_k127_3789099_1 formaldehyde-activating enzyme K10713 - 4.2.1.147 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001366 277.0
LYD1_k127_3789099_2 Catalyzes the hydrolysis of methenyl-H(4)MPT( ) to 5- formyl-H(4)MPT K01499 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009987,GO:0015947,GO:0016787,GO:0016810,GO:0016814,GO:0018759,GO:0019238,GO:0043446,GO:0044237,GO:0044424,GO:0044464,GO:0071704 3.5.4.27 0.000000000000000000000000000000000000000000000000000000000000000000000000001012 260.0
LYD1_k127_3789099_3 ATP:dephospho-CoA triphosphoribosyl transferase K05966 - 2.4.2.52 0.00000000000000000000000000000000000000000000000000000000000000000001559 242.0
LYD1_k127_3789099_4 Belongs to the HisA HisF family K01814 - 5.3.1.16 0.000000000000000000000000000000008912 135.0
LYD1_k127_3789233_0 FAD linked oxidases, C-terminal domain K00104,K18930 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 469.0
LYD1_k127_3789233_1 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 288.0
LYD1_k127_382652_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 367.0
LYD1_k127_382652_1 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000002963 140.0
LYD1_k127_382652_2 Glycosyl Hydrolase Family 88 - - - 0.00000000000000000000000000000000003887 135.0
LYD1_k127_382652_3 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000004608 130.0
LYD1_k127_382652_4 von Willebrand factor, type A - - - 0.0000000000000000000003374 111.0
LYD1_k127_382859_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 5.555e-206 655.0
LYD1_k127_382859_1 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007038 304.0
LYD1_k127_382859_2 ECF sigma factor K03088 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0004604 43.0
LYD1_k127_3831772_0 Domain of unknown function (DUF1998) K06877 - - 4.428e-298 935.0
LYD1_k127_3831772_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 555.0
LYD1_k127_3831772_2 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004823 379.0
LYD1_k127_3831772_3 Phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 374.0
LYD1_k127_3831772_4 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 326.0
LYD1_k127_3831772_5 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000163 280.0
LYD1_k127_3831772_6 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000003358 227.0
LYD1_k127_3831772_7 Exonuclease K07502 - - 0.00000000000000000000000000000000000000000000000000000000395 216.0
LYD1_k127_3831772_8 4Fe-4S binding domain K00176 - 1.2.7.3 0.000000000000000000000000001419 113.0
LYD1_k127_3831772_9 Histidinol phosphatase K04486 - 3.1.3.15 0.00000000000000003435 89.0
LYD1_k127_3841726_0 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 1.092e-225 716.0
LYD1_k127_3841726_1 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 568.0
LYD1_k127_3841726_10 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.00000000000000000003891 97.0
LYD1_k127_3841726_11 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000001937 59.0
LYD1_k127_3841726_12 SnoaL-like domain - - - 0.000002278 57.0
LYD1_k127_3841726_13 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0003037 48.0
LYD1_k127_3841726_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 429.0
LYD1_k127_3841726_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 344.0
LYD1_k127_3841726_4 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000008179 201.0
LYD1_k127_3841726_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000006108 170.0
LYD1_k127_3841726_6 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000002676 169.0
LYD1_k127_3841726_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000000000007288 122.0
LYD1_k127_3841726_8 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000003639 120.0
LYD1_k127_3841726_9 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000555 109.0
LYD1_k127_385296_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 2.652e-239 767.0
LYD1_k127_385296_1 Catalyzes the interconversion of ornithine to glutamate semialdehyde K00819 - 2.6.1.13 1.254e-209 657.0
LYD1_k127_385296_2 recombination factor protein RarA K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 497.0
LYD1_k127_385296_3 Glycosyltransferase like family 2 K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 385.0
LYD1_k127_385296_4 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 379.0
LYD1_k127_385296_5 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000000000000000000000000000000000005661 199.0
LYD1_k127_385296_6 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000000339 164.0
LYD1_k127_385296_7 serine-type endopeptidase activity - - - 0.00000000000000000000000000000001544 137.0
LYD1_k127_385296_8 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000001108 118.0
LYD1_k127_385296_9 Glycoprotease family K01409,K14742 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000004514 51.0
LYD1_k127_38763_0 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002567 296.0
LYD1_k127_38763_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000001232 243.0
LYD1_k127_38763_2 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000007995 239.0
LYD1_k127_38763_3 PFAM aminotransferase, class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000005864 239.0
LYD1_k127_38763_4 DNA-binding transcription factor activity - - - 0.00000000000000000000000004281 113.0
LYD1_k127_38763_5 ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component - - - 0.000000000000000000000002556 110.0
LYD1_k127_3882742_0 cell redox homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000128 246.0
LYD1_k127_3882742_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000001961 166.0
LYD1_k127_3882742_2 PFAM Nitroreductase - - - 0.0000000000000000000000000000000001588 140.0
LYD1_k127_3882742_3 - - - - 0.0000003094 57.0
LYD1_k127_3903165_0 Large extracellular alpha-helical protein K06894 - - 0.0 1945.0
LYD1_k127_3903165_1 Ecdysteroid kinase K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 380.0
LYD1_k127_3906524_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.986e-314 981.0
LYD1_k127_3906524_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 1.915e-251 784.0
LYD1_k127_3906524_2 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000006991 239.0
LYD1_k127_3918467_0 nuclear chromosome segregation - - - 0.000000000000000000000002151 114.0
LYD1_k127_3918467_1 Pfam Aerotolerance regulator N-terminal - - - 0.0009916 52.0
LYD1_k127_393581_0 Sulfatase-modifying factor enzyme 1 K18912 - 1.14.99.50 3.5e-322 999.0
LYD1_k127_393581_1 PFAM Transglycosylase-associated protein - - - 0.0000000000000256 74.0
LYD1_k127_3970130_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009254 359.0
LYD1_k127_3970130_1 signal sequence binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002047 259.0
LYD1_k127_3970130_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000008266 234.0
LYD1_k127_3978564_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 5.2.1.8 0.000000000000002127 89.0
LYD1_k127_3979496_0 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000009987 144.0
LYD1_k127_3979496_1 Pfam:TPM K08988 - - 0.000000000000000000000000000003597 127.0
LYD1_k127_3979496_2 regulatory protein, FmdB family - - - 0.00000000000269 69.0
LYD1_k127_3979496_3 Pilus assembly protein PilX K02673 - - 0.00000000002116 77.0
LYD1_k127_3980689_0 Domain of unknown function (DUF3459) K01236 - 3.2.1.141 1.212e-215 675.0
LYD1_k127_3980689_1 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 2.612e-196 618.0
LYD1_k127_3980689_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003412 260.0
LYD1_k127_3989827_0 3-deoxy-7-phosphoheptulonate synthase activity K00661,K03856,K04092,K04093,K04516,K04518,K14170,K14187 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 1.3.1.12,2.3.1.79,2.5.1.54,4.2.1.51,5.4.99.5 2.914e-223 710.0
LYD1_k127_3989827_1 PFAM peptidase U62 modulator of DNA gyrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 554.0
LYD1_k127_3989827_2 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 419.0
LYD1_k127_3989827_3 Putative modulator of DNA gyrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 332.0
LYD1_k127_3989827_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000003367 241.0
LYD1_k127_3989827_5 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000001847 226.0
LYD1_k127_3989827_6 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000001339 213.0
LYD1_k127_3989827_7 PFAM Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000005979 199.0
LYD1_k127_3989827_8 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000002853 145.0
LYD1_k127_4001799_0 Prolyl oligopeptidase K01322 - 3.4.21.26 1.552e-285 892.0
LYD1_k127_4001799_1 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - 4.682e-245 765.0
LYD1_k127_4001799_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000008584 230.0
LYD1_k127_4001799_3 Biotin-requiring enzyme - - - 0.0000000000000000009633 89.0
LYD1_k127_4001799_4 Biotin-requiring enzyme - - - 0.0000000000000000227 85.0
LYD1_k127_4003782_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 415.0
LYD1_k127_4003782_1 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 360.0
LYD1_k127_4003782_2 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 297.0
LYD1_k127_4003782_3 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000002061 187.0
LYD1_k127_4003782_4 oxidoreductase activity - - - 0.00000000000000000000000234 111.0
LYD1_k127_4003782_5 Peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000008559 79.0
LYD1_k127_4006037_0 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000117 254.0
LYD1_k127_4006037_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000002581 75.0
LYD1_k127_4006037_2 Ami_3 K01448 - 3.5.1.28 0.000002345 61.0
LYD1_k127_4011092_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K00187 - 1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 473.0
LYD1_k127_4011092_1 Pyruvate:ferredoxin oxidoreductase core domain II K00186 - 1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 388.0
LYD1_k127_4011092_10 response regulator, receiver - - - 0.000000000000003439 80.0
LYD1_k127_4011092_2 Oxidoreductase NAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003432 312.0
LYD1_k127_4011092_3 4 iron, 4 sulfur cluster binding K17996 - 1.12.98.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000146 272.0
LYD1_k127_4011092_4 His Kinase A (phosphoacceptor) domain K02484 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000006256 254.0
LYD1_k127_4011092_5 cheY-homologous receiver domain K07658 - - 0.0000000000000000000000007571 109.0
LYD1_k127_4011092_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.00000000000000000000004619 98.0
LYD1_k127_4011092_7 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.000000000000000000005453 95.0
LYD1_k127_4011092_8 hydrogenase, delta subunit - - - 0.000000000000000000007392 95.0
LYD1_k127_4011092_9 - - - - 0.0000000000000000001024 92.0
LYD1_k127_4024130_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009547 451.0
LYD1_k127_4024130_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 441.0
LYD1_k127_4024130_10 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000002459 62.0
LYD1_k127_4024130_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003998 269.0
LYD1_k127_4024130_3 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000001496 222.0
LYD1_k127_4024130_4 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000005588 220.0
LYD1_k127_4024130_5 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000007649 176.0
LYD1_k127_4024130_6 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000001608 176.0
LYD1_k127_4024130_7 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000006639 161.0
LYD1_k127_4024130_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000000002211 135.0
LYD1_k127_4024130_9 ATP-dependent DNA helicase activity K03655 GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494 3.6.4.12 0.000000000000000000004092 100.0
LYD1_k127_403155_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004888 244.0
LYD1_k127_403155_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000001827 218.0
LYD1_k127_403155_2 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000004248 119.0
LYD1_k127_4042472_0 Two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 521.0
LYD1_k127_4042472_1 Cytochrome bd-type quinol oxidase subunit 1 K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009655 507.0
LYD1_k127_4042472_2 histidine kinase, HAMP K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 407.0
LYD1_k127_4042472_3 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 379.0
LYD1_k127_4042472_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 341.0
LYD1_k127_4042472_5 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000004625 165.0
LYD1_k127_4042472_6 ribosomal protein - - - 0.000000000000000000000000000005554 122.0
LYD1_k127_4042472_7 peptidase - - - 0.0000000000000006346 79.0
LYD1_k127_4042472_8 TIGRFAM TonB family protein K03832 - - 0.000000009723 67.0
LYD1_k127_4052182_0 COG1943 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 304.0
LYD1_k127_4059909_0 Arginosuccinate synthase K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006721 604.0
LYD1_k127_4059909_1 PFAM Nucleotidyl transferase K00971 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 310.0
LYD1_k127_4059909_2 Belongs to the BshC family K22136 - - 0.000000000000000000000000000000000000001193 159.0
LYD1_k127_4059909_3 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00394 - 1.8.99.2 0.00000000008938 66.0
LYD1_k127_4069465_0 PFAM formate nitrite transporter K06212,K21993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 599.0
LYD1_k127_4069465_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009323 487.0
LYD1_k127_4069465_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 421.0
LYD1_k127_4069465_3 Putative heavy-metal-binding - - - 0.00000000000000000000000000000000000000000001698 166.0
LYD1_k127_4069465_4 Histidine kinase K02482 - 2.7.13.3 0.0000000000858 68.0
LYD1_k127_4069465_5 glutamate synthase - - - 0.0000000214 60.0
LYD1_k127_407248_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.0000000000000000000000000000000000000000000001848 179.0
LYD1_k127_407248_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000002453 188.0
LYD1_k127_4087857_0 Protein of unknown function (DUF763) K09003 - - 1.358e-198 625.0
LYD1_k127_4087857_1 Histone methylation protein DOT1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001518 285.0
LYD1_k127_4087857_10 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein - - - 0.0000000002618 64.0
LYD1_k127_4087857_2 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001055 271.0
LYD1_k127_4087857_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000003583 236.0
LYD1_k127_4087857_4 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000001769 172.0
LYD1_k127_4087857_5 PFAM NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000001208 148.0
LYD1_k127_4087857_6 short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000002046 118.0
LYD1_k127_4087857_7 Enoyl-(Acyl carrier protein) reductase K00059,K04708 - 1.1.1.100,1.1.1.102 0.0000000000000000000003779 100.0
LYD1_k127_4087857_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000002722 73.0
LYD1_k127_4087857_9 - - - - 0.000000000007268 72.0
LYD1_k127_4092262_0 Protein of unknown function, DUF255 K06888 - - 2.988e-225 713.0
LYD1_k127_4092262_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007292 255.0
LYD1_k127_4092262_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000151 259.0
LYD1_k127_4092262_3 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000001276 179.0
LYD1_k127_4092262_4 TIGRFAM TonB family protein K03832 - - 0.000000000000000000000000000000006363 142.0
LYD1_k127_4092262_5 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.0000000000000001005 86.0
LYD1_k127_4092262_6 Tetratricopeptide repeat - - - 0.00005803 55.0
LYD1_k127_4096460_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 363.0
LYD1_k127_4096460_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 345.0
LYD1_k127_4096460_2 PFAM Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000009564 102.0
LYD1_k127_409759_0 Caspase domain - - - 0.000000000000000000000000000000000000000000000000000000003049 211.0
LYD1_k127_409759_1 - - - - 0.000000000000000000000002425 109.0
LYD1_k127_4107791_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 3.935e-215 677.0
LYD1_k127_4107791_1 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 532.0
LYD1_k127_4107791_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007616 344.0
LYD1_k127_4107791_3 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000004278 107.0
LYD1_k127_4131023_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 501.0
LYD1_k127_4131023_1 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 411.0
LYD1_k127_4131023_2 Urocanase Rossmann-like domain K01712 - 4.2.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 386.0
LYD1_k127_4131023_3 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001925 273.0
LYD1_k127_4131023_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000002113 237.0
LYD1_k127_4160103_0 - K06147,K06148,K12541,K13409,K20344 - - 0.0000000000003322 77.0
LYD1_k127_4160103_1 Thioredoxin - - - 0.0000984 52.0
LYD1_k127_4165607_0 Glycosyl hydrolase family 67 C-terminus K01235 - 3.2.1.139 1.034e-249 780.0
LYD1_k127_4165607_1 xanthine dehydrogenase activity K11178 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000009272 252.0
LYD1_k127_4186896_0 Spermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005996 292.0
LYD1_k127_4186896_1 RNase H - - - 0.0000000000000000000000000006395 119.0
LYD1_k127_4186896_2 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000004985 88.0
LYD1_k127_4188689_0 Response regulator, receiver K01007 - 2.7.9.2 0.0 1368.0
LYD1_k127_4188689_1 glutamate dehydrogenase [NAD(P)+] activity K00262 - 1.4.1.4 2.013e-251 780.0
LYD1_k127_4188689_2 glutamate dehydrogenase [NAD(P)+] activity K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 572.0
LYD1_k127_4188689_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 330.0
LYD1_k127_4188689_4 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000007109 251.0
LYD1_k127_4188689_5 Domains LysM, LysM, NLPC_P60 K19223 - - 0.0000000000000000000000000000009344 132.0
LYD1_k127_4188689_6 Thiol-disulfide isomerase and - - - 0.00000000000000000000000001076 117.0
LYD1_k127_4188689_7 - - - - 0.00000000000000002297 83.0
LYD1_k127_4188689_8 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00001948 55.0
LYD1_k127_4197766_0 ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000003945 185.0
LYD1_k127_4197766_1 Yip1 domain - - - 0.00002366 55.0
LYD1_k127_419931_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004895 278.0
LYD1_k127_419931_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003057 275.0
LYD1_k127_419931_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000664 159.0
LYD1_k127_4201213_0 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 325.0
LYD1_k127_4201213_1 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 296.0
LYD1_k127_4201213_2 pfam abc K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007332 285.0
LYD1_k127_4201213_3 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000001843 59.0
LYD1_k127_4203272_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000182 268.0
LYD1_k127_4203272_1 PFAM Rieske 2Fe-2S domain protein K02636 - 1.10.9.1 0.0000000000000000002874 93.0
LYD1_k127_4203272_2 PFAM blue (type 1) copper domain protein - - - 0.000000002941 69.0
LYD1_k127_4203272_3 Involved in the tonB-independent uptake of proteins - - - 0.0000004773 57.0
LYD1_k127_4203272_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000005314 59.0
LYD1_k127_4203272_5 intracellular protease K05520 - 3.5.1.124 0.0001017 52.0
LYD1_k127_4219119_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0 1215.0
LYD1_k127_4219119_1 Ribosomal protein S1 K02945,K03527 - 1.17.7.4 5.009e-209 664.0
LYD1_k127_4219119_10 cobalamin binding protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003315 269.0
LYD1_k127_4219119_11 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000001862 266.0
LYD1_k127_4219119_12 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000000000000000000000001261 247.0
LYD1_k127_4219119_13 Outer membrane efflux protein K15725 - - 0.000000000000000000000000000000000000000000000000000000000006667 224.0
LYD1_k127_4219119_14 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000003412 200.0
LYD1_k127_4219119_15 Domain of unknown function (DUF2088) K22373 - 5.1.2.1 0.0000000000000000000000000000000000000000000006167 183.0
LYD1_k127_4219119_16 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000002946 110.0
LYD1_k127_4219119_17 - - - - 0.0002427 46.0
LYD1_k127_4219119_2 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009384 592.0
LYD1_k127_4219119_3 CoA binding domain K09181 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 584.0
LYD1_k127_4219119_4 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009588 568.0
LYD1_k127_4219119_5 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000584 460.0
LYD1_k127_4219119_6 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 441.0
LYD1_k127_4219119_7 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007382 412.0
LYD1_k127_4219119_8 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005257 277.0
LYD1_k127_4219119_9 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002522 281.0
LYD1_k127_422071_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 1.835e-239 759.0
LYD1_k127_422071_1 PFAM 2Fe-2S -binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000007915 220.0
LYD1_k127_422071_2 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000001061 164.0
LYD1_k127_4231197_0 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 481.0
LYD1_k127_4231197_1 Peptidase family M20/M25/M40 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 421.0
LYD1_k127_4231197_2 Domain of unknown function (DUF1731) K07071 - - 0.000000000006926 68.0
LYD1_k127_4247883_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 420.0
LYD1_k127_4247883_1 Belongs to the CinA family K03742 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 366.0
LYD1_k127_4247883_10 Trm112p-like protein K09791 - - 0.000000000000000000000006155 101.0
LYD1_k127_4247883_11 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000004516 73.0
LYD1_k127_4247883_2 Domain of unknown function (DUF3488) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 310.0
LYD1_k127_4247883_3 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000009536 223.0
LYD1_k127_4247883_4 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000002647 183.0
LYD1_k127_4247883_5 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000001307 174.0
LYD1_k127_4247883_6 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000004587 168.0
LYD1_k127_4247883_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000548 152.0
LYD1_k127_4247883_8 Lipopolysaccharide heptosyltransferase III K02849 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:0071967,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000000000000000000000000000000001966 146.0
LYD1_k127_4247883_9 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.000000000000000000000000007347 115.0
LYD1_k127_4270455_0 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006487 563.0
LYD1_k127_4270455_1 hmm pf01266 K00244 - 1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 340.0
LYD1_k127_4270455_10 - - - - 0.0004827 44.0
LYD1_k127_4270455_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 292.0
LYD1_k127_4270455_3 TIGRFAM sugar (Glycoside-Pentoside-Hexuronide) transporter K03292,K16139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005316 280.0
LYD1_k127_4270455_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000889 192.0
LYD1_k127_4270455_5 PFAM Rhomboid family - - - 0.000000000000000000000000000000000000000000000000004234 189.0
LYD1_k127_4270455_6 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000002207 181.0
LYD1_k127_4270455_7 - - - - 0.000000000000000000000000000009213 130.0
LYD1_k127_4270455_8 PFAM S23 ribosomal protein - - - 0.0000000000000000000000000001685 120.0
LYD1_k127_4270455_9 Outer membrane protein protective antigen OMA87 K07277 - - 0.000007713 58.0
LYD1_k127_4284576_0 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 347.0
LYD1_k127_4284576_1 Molybdenum Cofactor Synthesis C K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008376 330.0
LYD1_k127_4284576_10 - - - - 0.00009875 53.0
LYD1_k127_4284576_2 PFAM Smr protein MutS2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001671 250.0
LYD1_k127_4284576_3 Secondary thiamine-phosphate synthase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000002771 233.0
LYD1_k127_4284576_4 CDP-alcohol phosphatidyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000939 231.0
LYD1_k127_4284576_5 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K19270 - 3.1.3.23 0.0000000000000000000000000000000000000000000000000000000000000002377 231.0
LYD1_k127_4284576_6 GtrA-like protein - - - 0.0000000000000000000000000000004808 132.0
LYD1_k127_4284576_7 CAAX protease self-immunity - - - 0.000000000000000000000000001326 121.0
LYD1_k127_4284576_8 Nitroreductase family - - - 0.00000000000000000000001147 102.0
LYD1_k127_4284576_9 PFAM Nitroreductase - - - 0.00000000007315 63.0
LYD1_k127_4286374_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005688 286.0
LYD1_k127_4286374_1 4Fe-4S dicluster domain - - - 0.00000000000000000001342 93.0
LYD1_k127_4311088_0 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 338.0
LYD1_k127_4311088_1 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 299.0
LYD1_k127_4311088_2 PFAM Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001144 266.0
LYD1_k127_4311088_3 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000697 151.0
LYD1_k127_4311088_4 PFAM von Willebrand factor type A K07114 - - 0.00000000000000000000000000000000001501 147.0
LYD1_k127_4311088_5 protein-disulfide reductase activity K05807 - - 0.00000002322 58.0
LYD1_k127_4311088_6 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 - 2.5.1.54 0.0005693 43.0
LYD1_k127_4312312_0 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.0000000000000000000000000000000005277 134.0
LYD1_k127_4342131_0 Domain of unknown function (DUF1972) K12996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004722 424.0
LYD1_k127_4342131_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 443.0
LYD1_k127_4342131_2 Wzt C-terminal domain K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 424.0
LYD1_k127_4342131_3 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 308.0
LYD1_k127_4342131_4 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003046 278.0
LYD1_k127_4342131_5 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000003 233.0
LYD1_k127_4342131_6 macromolecule localization K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000003547 231.0
LYD1_k127_4342131_7 O-antigen ligase like membrane protein - - - 0.000000000000000000000000004012 121.0
LYD1_k127_4351937_0 acetolactate synthase K01652 GO:0000287,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0019842,GO:0030976,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901681 2.2.1.6 3.454e-199 629.0
LYD1_k127_4351937_1 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009405,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0019725,GO:0020012,GO:0030312,GO:0030682,GO:0032843,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071944,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000001891 231.0
LYD1_k127_4351937_2 A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000003667 147.0
LYD1_k127_4351937_3 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000002265 110.0
LYD1_k127_4351937_4 Methylamine utilisation protein MauE - - - 0.0000000000000000000007369 100.0
LYD1_k127_4351937_5 - - - - 0.000000000000000000002944 97.0
LYD1_k127_4351937_6 protein transport - - - 0.00000000000004102 76.0
LYD1_k127_4351937_7 Protein-disulfide isomerase - - - 0.000000000003499 75.0
LYD1_k127_4410279_0 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 320.0
LYD1_k127_4410279_1 Carbohydrate family 9 binding domain-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000005042 233.0
LYD1_k127_4410279_2 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000001212 232.0
LYD1_k127_4410279_3 Tfp pilus assembly protein FimV - - - 0.0000000000000000000000000000000001604 149.0
LYD1_k127_4410279_4 TOBE domain - - - 0.00000000000000000003646 93.0
LYD1_k127_4410279_5 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000003433 86.0
LYD1_k127_4410279_6 Vitamin B12 dependent methionine synthase, activation domain - - - 0.00000000000000008238 90.0
LYD1_k127_4417300_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 2.011e-279 884.0
LYD1_k127_4417300_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 465.0
LYD1_k127_4417300_2 Dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 398.0
LYD1_k127_4417300_3 with different specificities (related to short-chain alcohol K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 297.0
LYD1_k127_4417300_4 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000001728 178.0
LYD1_k127_4417300_5 PFAM Lytic K08309 - - 0.0000000000000000000000000000000002041 140.0
LYD1_k127_4417300_6 - - - - 0.00000000000000000000002825 104.0
LYD1_k127_4417300_7 Modulates RecA activity K03565 - - 0.000000006403 64.0
LYD1_k127_4417678_0 CoA binding domain K01905 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000001347 275.0
LYD1_k127_4417678_1 FAD linked oxidase domain protein K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000001325 179.0
LYD1_k127_4417678_2 4Fe-4S dicluster domain K08264 - 1.8.98.1 0.0000000000000000000000001105 109.0
LYD1_k127_442425_0 TIGRFAM Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 523.0
LYD1_k127_442425_1 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 481.0
LYD1_k127_442425_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000002419 207.0
LYD1_k127_442425_3 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000009421 186.0
LYD1_k127_442425_4 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000004784 165.0
LYD1_k127_442425_5 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 0.00000000000000000604 91.0
LYD1_k127_442425_6 shape-determining protein MreD K03571 - - 0.0003293 49.0
LYD1_k127_4432827_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 381.0
LYD1_k127_4432827_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.0000000000000000000000000000000000001913 151.0
LYD1_k127_4432827_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000001547 142.0
LYD1_k127_4432827_3 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000002331 130.0
LYD1_k127_4432827_4 Tricorn protease homolog K08676 - - 0.000000000000000000000000005111 113.0
LYD1_k127_4432827_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000006156 107.0
LYD1_k127_4459074_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 299.0
LYD1_k127_4459074_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
LYD1_k127_4459074_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000001366 98.0
LYD1_k127_4468643_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.0 1688.0
LYD1_k127_4468643_1 FAD dependent oxidoreductase K00109,K15736 - 1.1.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 454.0
LYD1_k127_4468643_2 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 402.0
LYD1_k127_4468643_3 Cytochrome c3 - - - 0.00000000000007055 76.0
LYD1_k127_4468643_4 COG1055 Na H antiporter NhaD and related arsenite permeases - - - 0.00006465 48.0
LYD1_k127_4493051_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007458 582.0
LYD1_k127_4493051_1 FeS assembly protein SufD K07033,K09015 GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 319.0
LYD1_k127_4493051_2 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000000000000000000000000000000009417 216.0
LYD1_k127_4493051_3 metal-sulfur cluster biosynthetic enzyme K02612 - - 0.0000000000000000000000000000000000001202 145.0
LYD1_k127_4493051_4 Domain of unknown function (DUF374) K09778 - - 0.000000006274 58.0
LYD1_k127_449523_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 529.0
LYD1_k127_449523_1 COG2414 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 500.0
LYD1_k127_449523_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 461.0
LYD1_k127_449523_3 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 379.0
LYD1_k127_449523_4 - - - - 0.00000000000000000000000000000000000000000000000000000000006101 216.0
LYD1_k127_449523_5 PFAM Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000002968 212.0
LYD1_k127_449523_6 - - - - 0.000000000000000000000003961 107.0
LYD1_k127_449523_8 PFAM Extracellular solute-binding protein, family 7 - - - 0.0000000000003855 73.0
LYD1_k127_4499608_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 6.302e-290 906.0
LYD1_k127_4499608_1 Uncharacterised protein family UPF0052 - - - 9.988e-237 753.0
LYD1_k127_4499608_10 helix_turn_helix, Lux Regulon - - - 0.00000000002047 74.0
LYD1_k127_4499608_11 Selenoprotein, putative - - - 0.00000001028 58.0
LYD1_k127_4499608_12 Diguanylate cyclase, GGDEF domain - - - 0.000003665 57.0
LYD1_k127_4499608_13 - - - - 0.00007383 51.0
LYD1_k127_4499608_2 SMART Resolvase, RNase H domain protein fold K06959 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005441 477.0
LYD1_k127_4499608_3 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K07083,K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007002 361.0
LYD1_k127_4499608_4 NUDIX hydrolase - - - 0.00000000000000000000000000000000000000000000004902 173.0
LYD1_k127_4499608_5 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000003286 154.0
LYD1_k127_4499608_6 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000001387 154.0
LYD1_k127_4499608_7 COG0521 Molybdopterin biosynthesis enzymes K03638 - 2.7.7.75 0.00000000000000000000000000000000000001464 151.0
LYD1_k127_4499608_8 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000001714 151.0
LYD1_k127_4499608_9 regulatory protein, FmdB family - - - 0.0000000000000000000005639 98.0
LYD1_k127_4505114_0 cobalamin binding K01847,K01849 - 5.4.99.2 5.145e-305 941.0
LYD1_k127_4505114_1 lipolytic protein G-D-S-L family - - - 5.913e-234 733.0
LYD1_k127_4505114_10 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000006619 206.0
LYD1_k127_4505114_11 CYTH domain - - - 0.00000000000000000000000000000000000000000000000000008523 192.0
LYD1_k127_4505114_12 Biotin-requiring enzyme K17490 - 2.1.3.1 0.0000000000000000000000000000000000001062 150.0
LYD1_k127_4505114_13 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000005062 92.0
LYD1_k127_4505114_15 cellulase activity - - - 0.0000000008247 74.0
LYD1_k127_4505114_16 domain protein - - - 0.00000002231 69.0
LYD1_k127_4505114_17 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000004207 49.0
LYD1_k127_4505114_18 Tetratricopeptide repeat - - - 0.00002025 56.0
LYD1_k127_4505114_19 - - - - 0.00009244 52.0
LYD1_k127_4505114_2 Methylmalonyl-CoA mutase K01847,K03763,K14447 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016999,GO:0017144,GO:0019541,GO:0019678,GO:0019752,GO:0030312,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046459,GO:0071704,GO:0071944 2.7.7.7,5.4.99.2,5.4.99.63 2.675e-203 642.0
LYD1_k127_4505114_3 ArgK protein K07588 GO:0003674,GO:0003824,GO:0003924,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 518.0
LYD1_k127_4505114_4 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 474.0
LYD1_k127_4505114_5 CoA carboxylase activity K01966,K17489 - 2.1.3.1,2.1.3.15,6.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 456.0
LYD1_k127_4505114_6 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 387.0
LYD1_k127_4505114_7 Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta K17489 - 2.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 297.0
LYD1_k127_4505114_8 cobalamin binding K01847,K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000001148 252.0
LYD1_k127_4505114_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000007759 207.0
LYD1_k127_4517941_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1235.0
LYD1_k127_4517941_1 GXGXG motif - - - 4.501e-317 989.0
LYD1_k127_4517941_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000007604 249.0
LYD1_k127_4517941_3 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005809 249.0
LYD1_k127_4517941_4 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.00000000000000000000000000000000000000008817 160.0
LYD1_k127_4517941_5 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767 - 5.2.1.8 0.00000000000335 67.0
LYD1_k127_451958_0 Protein of unknown function (DUF1722) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 430.0
LYD1_k127_451958_1 Permease, YjgP YjgQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005793 437.0
LYD1_k127_451958_2 Belongs to the 'phage' integrase family. XerC subfamily K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001325 284.0
LYD1_k127_451958_3 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000000000000000000000004582 204.0
LYD1_k127_451958_4 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000003266 203.0
LYD1_k127_4531308_0 NADH flavin oxidoreductase NADH oxidase - - - 7.276e-289 900.0
LYD1_k127_4531308_1 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 8.126e-287 902.0
LYD1_k127_4531308_2 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 557.0
LYD1_k127_4531308_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009902 384.0
LYD1_k127_4531308_4 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000009923 55.0
LYD1_k127_4532052_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 446.0
LYD1_k127_4532052_1 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 328.0
LYD1_k127_4532052_2 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488,K13819 - - 0.0000000000000000000000000000000000000000000000000000000000000000002185 241.0
LYD1_k127_453575_0 Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain K00104,K10530,K16422 - 1.1.3.15,1.1.3.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007863 333.0
LYD1_k127_453575_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009139 312.0
LYD1_k127_453575_10 - - - - 0.000000005419 57.0
LYD1_k127_453575_11 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0005913 44.0
LYD1_k127_453575_2 Fungal trichothecene efflux pump (TRI12) - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 302.0
LYD1_k127_453575_3 Copper binding periplasmic protein CusF K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008391 263.0
LYD1_k127_453575_4 Coenzyme A transferase K01029 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000006627 224.0
LYD1_k127_453575_5 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000005643 215.0
LYD1_k127_453575_6 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000114 201.0
LYD1_k127_453575_7 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000008259 168.0
LYD1_k127_453575_8 Pyridoxamine 5'-phosphate oxidase - - - 0.0000000000000000000000000000000000006548 143.0
LYD1_k127_453575_9 - - - - 0.0000000001366 65.0
LYD1_k127_4539275_0 extracellular polysaccharide biosynthetic process K16554,K16692 - - 0.0000000000000000000000000000000000000000000000618 192.0
LYD1_k127_454877_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1176.0
LYD1_k127_454877_1 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000001077 172.0
LYD1_k127_4556369_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002254 264.0
LYD1_k127_4556369_1 PBS lyase HEAT domain protein repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000001527 211.0
LYD1_k127_4556369_2 - - - - 0.000000000000008424 83.0
LYD1_k127_4570145_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.717e-270 854.0
LYD1_k127_4570145_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 539.0
LYD1_k127_4570145_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007952 319.0
LYD1_k127_4570145_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000001301 249.0
LYD1_k127_4570145_4 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000001901 196.0
LYD1_k127_4570145_5 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000006754 163.0
LYD1_k127_4570145_6 - - - - 0.0000000000000000000000002814 118.0
LYD1_k127_4581110_0 Biotin carboxylase C-terminal domain - - - 2.584e-202 640.0
LYD1_k127_4581110_1 Uncharacterised protein family (UPF0261) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002306 246.0
LYD1_k127_4581110_2 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 0.00000008472 55.0
LYD1_k127_4581218_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006689 529.0
LYD1_k127_4581218_1 KR domain K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001097 268.0
LYD1_k127_4581218_2 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001257 251.0
LYD1_k127_4581218_3 4 iron, 4 sulfur cluster binding K18356 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000002499 215.0
LYD1_k127_4604054_0 TIGRFAM polysaccharide deactylase family protein, PEP-CTERM locus subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 299.0
LYD1_k127_4604054_1 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000001367 118.0
LYD1_k127_4604054_2 NUBPL iron-transfer P-loop NTPase K00903 - 2.7.10.2 0.00000000000000003384 85.0
LYD1_k127_4604054_3 DUF218 domain - - - 0.00000002 62.0
LYD1_k127_4610681_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 490.0
LYD1_k127_4610681_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006338 366.0
LYD1_k127_4610681_2 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 297.0
LYD1_k127_4610681_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000001854 166.0
LYD1_k127_4610681_4 PFAM S23 ribosomal protein - - - 0.00000000000000000000000000003243 122.0
LYD1_k127_4610681_5 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000017 80.0
LYD1_k127_4610681_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000001156 60.0
LYD1_k127_4622236_0 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005906 287.0
LYD1_k127_4637914_0 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001477 269.0
LYD1_k127_4637914_1 phosphatidate phosphatase activity - - - 0.0000000000000000000000000000000000000000000000000000000000004956 222.0
LYD1_k127_4637914_2 phosphoglycerate mutase K02226,K22316 GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0006139,GO:0006401,GO:0006725,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016891,GO:0016893,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0032296,GO:0033013,GO:0033014,GO:0034641,GO:0034655,GO:0042364,GO:0042578,GO:0043170,GO:0043755,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0046700,GO:0051186,GO:0051188,GO:0071667,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 3.1.26.4,3.1.3.73 0.000000000000000000000000000000000069 143.0
LYD1_k127_4637914_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00798 - 2.5.1.17 0.00000000000000000000128 96.0
LYD1_k127_4638851_0 DNA topoisomerase K02622 - - 2.284e-228 722.0
LYD1_k127_4638851_1 RNA polymerase sigma factor K03088 - - 0.000000000000000000000000000001632 127.0
LYD1_k127_4639993_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 397.0
LYD1_k127_4639993_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000001501 218.0
LYD1_k127_4639993_2 RNA methyltransferase RsmD family - - - 0.00000000000000000231 85.0
LYD1_k127_4649119_0 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000189 192.0
LYD1_k127_4652975_0 hydrolase, family 3 K05349 - 3.2.1.21 2.409e-250 796.0
LYD1_k127_4652975_1 glucuronate isomerase K01812 - 5.3.1.12 3.562e-225 705.0
LYD1_k127_4652975_2 FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.00000000000000000000000000000000000000001735 156.0
LYD1_k127_4652975_3 Transporter, major facilitator family protein - - - 0.00007287 49.0
LYD1_k127_4655938_0 Belongs to the transketolase family K00615 - 2.2.1.1 1.258e-289 900.0
LYD1_k127_4660268_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002327 253.0
LYD1_k127_4660268_1 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000005919 235.0
LYD1_k127_4660268_2 Membrane protein implicated in regulation of membrane protease activity - - - 0.00008702 45.0
LYD1_k127_4661126_0 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain L K00341 - 1.6.5.3 2.221e-202 651.0
LYD1_k127_4661126_1 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 1.557e-199 629.0
LYD1_k127_4661126_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 616.0
LYD1_k127_4661126_3 Male sterility protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 353.0
LYD1_k127_4661126_4 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000001426 167.0
LYD1_k127_4661126_5 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000000000000000000002655 164.0
LYD1_k127_4661126_6 DNA polymerase beta domain protein region K09717 - - 0.000000000000000000000000000000000618 144.0
LYD1_k127_4661126_7 oligosaccharyl transferase activity K19003,K20327 - 2.4.1.336 0.000000000000000000000000000000002498 147.0
LYD1_k127_4661126_8 CYTH K05873 - 4.6.1.1 0.000000006051 59.0
LYD1_k127_4661126_9 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000006787 56.0
LYD1_k127_467468_0 UDP-N-acetylmuramate-L-alanine ligase activity K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 563.0
LYD1_k127_467468_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 413.0
LYD1_k127_467468_10 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K01921,K03589,K06438 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0040007,GO:0042802,GO:0043093,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 0.00000005371 64.0
LYD1_k127_467468_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 387.0
LYD1_k127_467468_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 385.0
LYD1_k127_467468_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006178 357.0
LYD1_k127_467468_5 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 341.0
LYD1_k127_467468_6 TIGRFAM stage V sporulation protein E, cell division protein FtsW K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000419 278.0
LYD1_k127_467468_7 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001712 241.0
LYD1_k127_467468_8 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000003549 242.0
LYD1_k127_4677410_0 Belongs to the UbiD family K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 514.0
LYD1_k127_4677410_1 helicase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002859 260.0
LYD1_k127_4720041_0 Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 389.0
LYD1_k127_4720041_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000002529 212.0
LYD1_k127_4720041_2 PFAM Acetyltransferase (GNAT) family K00619 - 2.3.1.1 0.0000000000000000000000000000000000000000002122 164.0
LYD1_k127_4720041_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000004217 132.0
LYD1_k127_4720041_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000001171 52.0
LYD1_k127_473722_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 593.0
LYD1_k127_473722_1 PFAM Rh family protein ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 469.0
LYD1_k127_473722_10 - - - - 0.000003126 53.0
LYD1_k127_473722_11 Aldo/keto reductase family K07079 - - 0.0000171 48.0
LYD1_k127_473722_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 374.0
LYD1_k127_473722_3 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007 362.0
LYD1_k127_473722_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000003736 238.0
LYD1_k127_473722_5 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000003864 151.0
LYD1_k127_473722_6 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000001731 158.0
LYD1_k127_473722_7 Penicillinase repressor - - - 0.00000000000000000000000000003313 121.0
LYD1_k127_473722_8 PA domain - - - 0.0000000000000000000002282 100.0
LYD1_k127_473722_9 ABC transporter K02029,K02030,K10036 - - 0.0000000000002627 83.0
LYD1_k127_4738678_0 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000009375 136.0
LYD1_k127_4738678_1 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.0005621 42.0
LYD1_k127_474580_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1038.0
LYD1_k127_474580_1 PFAM Peptidase M16 inactive domain - - - 0.000000000000000001096 92.0
LYD1_k127_4769339_0 Phosphatase K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000002445 190.0
LYD1_k127_4776019_0 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 486.0
LYD1_k127_4776019_1 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006744 361.0
LYD1_k127_4776019_2 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000001063 132.0
LYD1_k127_4776019_3 Transcriptional regulator K07727 - - 0.0000000004252 62.0
LYD1_k127_4776019_4 Uncharacterised ArCR, COG2043 - - - 0.00000001135 62.0
LYD1_k127_4776019_5 - - - - 0.000003414 59.0
LYD1_k127_4776019_6 transposase activity - - - 0.000006884 49.0
LYD1_k127_4776019_7 DJ-1/PfpI family K05520 - 3.5.1.124 0.00002449 54.0
LYD1_k127_4788949_0 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000000000000000002429 215.0
LYD1_k127_4788949_1 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.000000000000000000000000000000000008423 143.0
LYD1_k127_4788949_2 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000005575 122.0
LYD1_k127_4788949_3 - - - - 0.00008963 47.0
LYD1_k127_4789289_0 ATP-dependent helicase HrpB K03579 - 3.6.4.13 1.171e-219 704.0
LYD1_k127_4789289_1 Beta-lactamase - - - 0.000000000000375 74.0
LYD1_k127_4795820_0 Phospholipase B - - - 8.015e-198 627.0
LYD1_k127_4795820_1 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 337.0
LYD1_k127_4795820_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000009058 243.0
LYD1_k127_4795820_4 - - - - 0.0000001087 60.0
LYD1_k127_4795820_5 ThiS family K03636 - - 0.00003284 48.0
LYD1_k127_4798382_0 COG2414 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 437.0
LYD1_k127_4798382_1 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002775 331.0
LYD1_k127_4798382_2 MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000001721 246.0
LYD1_k127_4798382_3 Telomere recombination K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000002735 222.0
LYD1_k127_4798382_4 Histidine kinase K07777 - 2.7.13.3 0.0000000000000000000000000000000000004878 154.0
LYD1_k127_4798382_6 Cysteine-rich secretory protein family - - - 0.0000000000000003033 87.0
LYD1_k127_4798382_7 - - - - 0.00000000000000222 77.0
LYD1_k127_4798382_8 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain K21023 - 2.7.7.65 0.000000000000185 82.0
LYD1_k127_4798900_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 357.0
LYD1_k127_4798900_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001817 281.0
LYD1_k127_4798900_2 Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000006874 217.0
LYD1_k127_4798900_3 PFAM peptidase - - - 0.00000000000000000000000000000000000000000000000006852 185.0
LYD1_k127_4798900_4 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.0000000000000000000000000000000000001818 149.0
LYD1_k127_4798900_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000001363 139.0
LYD1_k127_4809064_0 Oligopeptidase F K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 488.0
LYD1_k127_4809064_1 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004555 278.0
LYD1_k127_4809064_2 cell adhesion involved in biofilm formation K13735,K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000005049 238.0
LYD1_k127_4809064_4 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000001181 197.0
LYD1_k127_4809064_5 PFAM HNH endonuclease - - - 0.00000000000000000000000000000000000000000000001658 178.0
LYD1_k127_4809064_6 von Willebrand factor, type A K07114 - - 0.000000000000000000000001017 115.0
LYD1_k127_4809064_7 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000001165 110.0
LYD1_k127_481481_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000005058 106.0
LYD1_k127_481481_1 PFAM Radical SAM domain protein - - - 0.000000000000000000000001817 109.0
LYD1_k127_4819559_0 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 377.0
LYD1_k127_4819559_1 RNA-binding protein - - - 0.00000000000000003182 89.0
LYD1_k127_4820731_0 PFAM Radical SAM K06937 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 323.0
LYD1_k127_4820731_1 4Fe-4S dicluster domain - - - 0.00000006283 61.0
LYD1_k127_484437_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009353 251.0
LYD1_k127_484437_1 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000006438 235.0
LYD1_k127_484437_2 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000003377 206.0
LYD1_k127_4848461_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1514.0
LYD1_k127_4848461_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000003771 167.0
LYD1_k127_4848461_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000072 56.0
LYD1_k127_4849618_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 2.3e-234 745.0
LYD1_k127_4849618_1 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 297.0
LYD1_k127_4849618_2 Protein of unknown function (DUF520) K09767 - - 0.0000000000000000000000000000000000000000000000000000576 191.0
LYD1_k127_4849618_3 Putative ABC exporter - - - 0.000000000000000000000000000000000234 147.0
LYD1_k127_4859499_0 AcrB/AcrD/AcrF family - - - 2.169e-295 922.0
LYD1_k127_4859499_1 TrkA-N domain K03455,K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007203 540.0
LYD1_k127_4859499_2 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009547 376.0
LYD1_k127_4859499_3 4Fe-4S dicluster domain - - - 0.000000000000000000000000002633 123.0
LYD1_k127_4859499_4 Hsp20/alpha crystallin family - - - 0.00000000000000000001529 96.0
LYD1_k127_4859499_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000106 94.0
LYD1_k127_4888000_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 4.457e-264 827.0
LYD1_k127_4888000_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007899 593.0
LYD1_k127_4888000_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 300.0
LYD1_k127_4888000_3 PIN domain - - - 0.0000000000000000000000000000002278 127.0
LYD1_k127_4888000_4 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000003022 54.0
LYD1_k127_489307_0 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 328.0
LYD1_k127_489307_1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003635 245.0
LYD1_k127_4923302_0 Pyridine nucleotide-disulphide oxidoreductase K00335 - 1.6.5.3 4.104e-315 997.0
LYD1_k127_4923302_1 COG1294 Cytochrome bd-type quinol oxidase subunit 2 K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 407.0
LYD1_k127_4923302_10 Transcription factor zinc-finger - - - 0.0000000000000000000000000000000000000000000000002273 189.0
LYD1_k127_4923302_11 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000001576 159.0
LYD1_k127_4923302_12 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.000000000000001424 77.0
LYD1_k127_4923302_2 Galactokinase galactose-binding signature K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 386.0
LYD1_k127_4923302_3 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 372.0
LYD1_k127_4923302_4 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 334.0
LYD1_k127_4923302_5 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000365 263.0
LYD1_k127_4923302_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000006502 252.0
LYD1_k127_4923302_7 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000007756 229.0
LYD1_k127_4923302_8 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000005376 207.0
LYD1_k127_4923302_9 Cytochrome bd-type quinol oxidase subunit 1 K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000003351 199.0
LYD1_k127_4924466_0 Response receiver-modulated cyclic diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002683 256.0
LYD1_k127_4924466_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.00000000000000000000000000000000000008577 149.0
LYD1_k127_4936348_0 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 397.0
LYD1_k127_4936348_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 360.0
LYD1_k127_4936348_2 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 328.0
LYD1_k127_4936348_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000859 206.0
LYD1_k127_4938724_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000004779 231.0
LYD1_k127_4938724_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000001202 148.0
LYD1_k127_4945504_0 Integral membrane protein TerC family K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003363 344.0
LYD1_k127_4945504_1 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003963 299.0
LYD1_k127_4945504_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 285.0
LYD1_k127_4970247_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 8.334e-214 681.0
LYD1_k127_4970247_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 583.0
LYD1_k127_4970247_10 Oligopeptide/dipeptide transporter, C-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001193 268.0
LYD1_k127_4970247_11 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002488 260.0
LYD1_k127_4970247_12 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000006562 214.0
LYD1_k127_4970247_13 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0031224,GO:0031226,GO:0032940,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051205,GO:0051234,GO:0051259,GO:0051260,GO:0051641,GO:0061024,GO:0065003,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.000000000000000000000000000000000000000000000004068 177.0
LYD1_k127_4970247_14 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000000000000000002319 109.0
LYD1_k127_4970247_15 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000002269 95.0
LYD1_k127_4970247_16 PFAM Single-stranded nucleic acid binding R3H K06346 - - 0.0000000000000000000838 96.0
LYD1_k127_4970247_17 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.00000000000000005129 89.0
LYD1_k127_4970247_18 Carboxypeptidase regulatory-like domain - - - 0.000000000000002284 90.0
LYD1_k127_4970247_19 nuclease activity K18828 - - 0.00000000000001974 79.0
LYD1_k127_4970247_2 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 465.0
LYD1_k127_4970247_20 TPR Domain containing protein K12600 - - 0.000000000001875 79.0
LYD1_k127_4970247_21 - - - - 0.000000000006677 70.0
LYD1_k127_4970247_22 response to nickel cation - - - 0.0000000001486 65.0
LYD1_k127_4970247_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 398.0
LYD1_k127_4970247_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 386.0
LYD1_k127_4970247_5 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005279 351.0
LYD1_k127_4970247_6 Efflux transporter, RND family, MFP subunit K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 310.0
LYD1_k127_4970247_7 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 299.0
LYD1_k127_4970247_8 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 301.0
LYD1_k127_4970247_9 COG0402 Cytosine deaminase and related metal-dependent K20810 - 3.5.4.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 307.0
LYD1_k127_4983723_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 5.852e-227 719.0
LYD1_k127_4983723_1 Aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007288 433.0
LYD1_k127_4983723_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 324.0
LYD1_k127_4983723_3 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009371 304.0
LYD1_k127_4983723_4 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000001089 198.0
LYD1_k127_4983723_5 Flavoprotein - - - 0.00000000000000000000000000000000000000000003307 169.0
LYD1_k127_4983723_6 OsmC-like protein K07397 - - 0.000000000000000000000003163 110.0
LYD1_k127_4983951_0 PFAM Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 4.026e-307 953.0
LYD1_k127_4983951_1 PFAM Glycoside hydrolase, family 20 K12373 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 602.0
LYD1_k127_4983951_2 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006499 539.0
LYD1_k127_4983951_3 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.00000000000000000000000000000000000000000008394 166.0
LYD1_k127_4983951_4 ribosomal large subunit export from nucleus - - - 0.00000000000000000001642 98.0
LYD1_k127_4983951_5 Smr domain - - - 0.0000000000000000001353 91.0
LYD1_k127_4986301_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1174.0
LYD1_k127_4986301_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 1.953e-205 649.0
LYD1_k127_4986301_2 metallophosphoesterase K07096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 349.0
LYD1_k127_4986301_3 - - - - 0.000004929 52.0
LYD1_k127_4991554_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 4.228e-260 813.0
LYD1_k127_4991554_1 PFAM glycoside hydrolase family 3 K05349 - 3.2.1.21 9.405e-214 682.0
LYD1_k127_4991554_2 pyridine nucleotide-disulphide oxidoreductase dimerisation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000238 282.0
LYD1_k127_4991554_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004407 256.0
LYD1_k127_4991554_4 domain, Protein - - - 0.000000000000000000000000000000000000000000005995 185.0
LYD1_k127_4991554_5 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000002372 160.0
LYD1_k127_4991554_6 Molybdopterin converting factor, small subunit K03636 - - 0.000000000002918 70.0
LYD1_k127_5004652_0 Alpha/beta hydrolase family K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 400.0
LYD1_k127_5004652_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001964 249.0
LYD1_k127_5004652_2 Glycosyl hydrolases family 18 - - - 0.000000000000000000000000000001285 130.0
LYD1_k127_501786_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.074e-281 885.0
LYD1_k127_501786_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000331 252.0
LYD1_k127_501786_2 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.000000000000000000000000000000000000000000000009686 173.0
LYD1_k127_501786_3 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.0000000000000000000000000001 117.0
LYD1_k127_501786_4 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00000000000000000000000003145 113.0
LYD1_k127_501786_5 Tfp pilus assembly protein FimV - - - 0.000000000000000000001824 105.0
LYD1_k127_501786_6 PFAM Peptidase family M28 - - - 0.000000000000001372 90.0
LYD1_k127_501786_7 G5 domain protein - - - 0.000000000005462 74.0
LYD1_k127_5039023_0 Sulfatase K01130 - 3.1.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009082 464.0
LYD1_k127_5039023_1 peptidase U32 K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004505 364.0
LYD1_k127_5039023_2 xanthine dehydrogenase activity K11178 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007842 326.0
LYD1_k127_5039023_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001637 276.0
LYD1_k127_5039023_4 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000003847 192.0
LYD1_k127_5039023_5 YtxH-like protein - - - 0.00000000006788 66.0
LYD1_k127_5039023_6 - - - - 0.0001189 51.0
LYD1_k127_503905_0 lactate metabolic process K00113 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 314.0
LYD1_k127_503905_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004642 259.0
LYD1_k127_503905_2 Belongs to the Fur family K03711,K09825 - - 0.00000000000000000000000004316 117.0
LYD1_k127_5040107_0 dead deah K03724 - - 0.0 1450.0
LYD1_k127_5040107_1 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 614.0
LYD1_k127_5040107_10 NUDIX domain - - - 0.000000001093 60.0
LYD1_k127_5040107_2 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 436.0
LYD1_k127_5040107_3 outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 390.0
LYD1_k127_5040107_4 PFAM secretion protein HlyD family protein K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007579 315.0
LYD1_k127_5040107_5 Threonine dehydrogenase and related Zn-dependent K00008 - 1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004885 280.0
LYD1_k127_5040107_6 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002976 252.0
LYD1_k127_5040107_7 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000002218 183.0
LYD1_k127_5040107_8 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000000000000000007143 155.0
LYD1_k127_5040107_9 4fe-4S ferredoxin, iron-sulfur binding domain protein K03522,K05337 - - 0.00000000000000000000000000000000004148 136.0
LYD1_k127_5049795_0 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005736 435.0
LYD1_k127_5049795_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 316.0
LYD1_k127_5049795_2 Gram-negative bacterial TonB protein C-terminal - - - 0.000000002602 65.0
LYD1_k127_5049795_3 amine dehydrogenase activity - - - 0.000004351 57.0
LYD1_k127_5064640_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 569.0
LYD1_k127_5064640_1 Aldo Keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 405.0
LYD1_k127_5064640_2 PFAM Alpha beta hydrolase fold-3 domain protein K14731 - 3.1.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004477 307.0
LYD1_k127_5065166_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 511.0
LYD1_k127_5065166_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000007913 140.0
LYD1_k127_5065166_2 PFAM YCII-related domain K09780 - - 0.00000000000000000000000000000003983 127.0
LYD1_k127_5065166_3 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000623 93.0
LYD1_k127_507503_0 Dehydrogenase K00248,K09478 - 1.3.8.1,1.3.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 527.0
LYD1_k127_507503_1 proline dipeptidase activity K01262,K01271 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009056,GO:0009987,GO:0016787,GO:0016805,GO:0019538,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0070573,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 456.0
LYD1_k127_507503_2 Peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 451.0
LYD1_k127_507503_3 tRNA synthetases class I (W and Y) K01867 GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 359.0
LYD1_k127_507503_4 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006461 351.0
LYD1_k127_507503_5 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000011 250.0
LYD1_k127_507503_6 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000751 158.0
LYD1_k127_507598_0 Ketoacyl-synthetase C-terminal extension - - - 0.0 2107.0
LYD1_k127_507598_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 4.134e-237 744.0
LYD1_k127_507598_2 PA domain - - - 1.332e-196 627.0
LYD1_k127_507598_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005886 372.0
LYD1_k127_507598_4 amino acid-binding ACT domain protein K04518 - 4.2.1.51 0.0000000000000000000000000006621 115.0
LYD1_k127_5086466_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000001294 199.0
LYD1_k127_5086466_1 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000147 191.0
LYD1_k127_5088705_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 494.0
LYD1_k127_5088705_1 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III C terminal K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 346.0
LYD1_k127_5088705_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.000000000000000000000001013 108.0
LYD1_k127_5088705_3 Glyoxalase-like domain K01759,K05606 - 4.4.1.5,5.1.99.1 0.00000000000000000000002128 104.0
LYD1_k127_5088949_0 Penicillin-Binding Protein C-terminus Family K05367 - 2.4.1.129 5.464e-215 689.0
LYD1_k127_5088949_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0000000000000000000000000000000000000000003311 159.0
LYD1_k127_5088949_3 Alpha-2-Macroglobulin K06894 - - 0.000000001941 58.0
LYD1_k127_5098052_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1075.0
LYD1_k127_5098052_1 Transposase (IS116 IS110 IS902 family) - - - 0.00000000000000000000000000000000000000000000000000000000000005633 227.0
LYD1_k127_5134646_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 6.218e-203 639.0
LYD1_k127_5134646_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000399 214.0
LYD1_k127_5156774_0 elongation factor Tu domain 2 protein K02355 - - 1.173e-238 757.0
LYD1_k127_5156774_1 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000008384 272.0
LYD1_k127_5156774_2 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000002739 243.0
LYD1_k127_5156774_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000001242 227.0
LYD1_k127_5156774_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.000000000000000000000000000004927 125.0
LYD1_k127_5162135_0 xanthine dehydrogenase activity K11178 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 297.0
LYD1_k127_5162135_1 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000007208 213.0
LYD1_k127_5162135_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 0.00000000000000000000000000001371 121.0
LYD1_k127_5172842_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 457.0
LYD1_k127_5172842_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006989 453.0
LYD1_k127_5172842_10 Smr domain - - - 0.00000000000000000000000001501 119.0
LYD1_k127_5172842_11 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000005855 98.0
LYD1_k127_5172842_12 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633,K13940 GO:0008150,GO:0040007 1.13.11.81,2.7.6.3,4.1.2.25,5.1.99.8 0.0000000004629 65.0
LYD1_k127_5172842_13 COG1413 FOG HEAT repeat - - - 0.000005833 55.0
LYD1_k127_5172842_14 snoRNA binding - - - 0.00001476 52.0
LYD1_k127_5172842_2 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 317.0
LYD1_k127_5172842_3 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009677 302.0
LYD1_k127_5172842_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000003957 240.0
LYD1_k127_5172842_5 Tellurite resistance protein TerB - - - 0.000000000000000000000000000000000000000000000000000003656 195.0
LYD1_k127_5172842_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000001985 155.0
LYD1_k127_5172842_7 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000005172 158.0
LYD1_k127_5172842_8 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000001756 154.0
LYD1_k127_5172842_9 Belongs to the HesB IscA family - - - 0.000000000000000000000000000008369 121.0
LYD1_k127_5174009_0 Two component transcriptional regulator, winged helix family K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008386 282.0
LYD1_k127_5174009_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000000000002209 239.0
LYD1_k127_5174009_2 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000742 106.0
LYD1_k127_5174802_0 response - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 350.0
LYD1_k127_5174802_1 SAF K01654 - 2.5.1.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006873 327.0
LYD1_k127_5174802_2 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000004009 228.0
LYD1_k127_5174802_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000002211 194.0
LYD1_k127_5174802_4 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000002612 190.0
LYD1_k127_5174802_5 - - - - 0.0004021 47.0
LYD1_k127_5194744_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 568.0
LYD1_k127_5194744_1 PFAM AMP-dependent synthetase and ligase K01897,K22319 - 6.1.3.1,6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006356 565.0
LYD1_k127_5194744_2 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 369.0
LYD1_k127_5194744_3 twitching motility protein K02669 - - 0.0000000000000000001653 89.0
LYD1_k127_5194744_4 homoserine transmembrane transporter activity K03329,K16327 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1903825,GO:1905039 - 0.0000000000000004045 88.0
LYD1_k127_5208362_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 611.0
LYD1_k127_5208362_1 pfam abc K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002003 277.0
LYD1_k127_5208362_2 COG2755 Lysophospholipase L1 and related K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000159 216.0
LYD1_k127_5211569_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003992 311.0
LYD1_k127_5211569_1 TRAP transporter T-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000006624 234.0
LYD1_k127_5211569_2 mannitol 2-dehydrogenase activity K11690 - - 0.0000000000000000000000000000000000000000000000000000000000000000008202 241.0
LYD1_k127_5221844_0 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000001749 198.0
LYD1_k127_5221844_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000004382 178.0
LYD1_k127_5221844_2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000001611 136.0
LYD1_k127_5224064_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 581.0
LYD1_k127_5224064_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0044237,GO:0071704,GO:1901135 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 312.0
LYD1_k127_5224064_2 Mur ligase, middle domain K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009896 293.0
LYD1_k127_5224064_3 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000005233 263.0
LYD1_k127_5224064_4 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000001685 239.0
LYD1_k127_5224064_5 alpha-L-rhamnosidase - - - 0.000000000000000000000000000000000000004074 149.0
LYD1_k127_5224064_6 - - - - 0.0000000000000000000000001405 114.0
LYD1_k127_5224064_7 membrane - - - 0.000000000000000002329 89.0
LYD1_k127_5224064_8 Fibronectin, type III domain - - - 0.000000000000002445 87.0
LYD1_k127_5224064_9 Peptidase, M16 K07263 - - 0.00004521 54.0
LYD1_k127_5236370_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.743e-254 790.0
LYD1_k127_5236370_1 carboxylase, biotin carboxylase K01961,K01965,K01968,K11263 - 6.3.4.14,6.4.1.2,6.4.1.3,6.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009136 282.0
LYD1_k127_5236370_2 Biotin-requiring enzyme - - - 0.000000000000000000000000000014 127.0
LYD1_k127_5249887_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 488.0
LYD1_k127_5249887_1 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.0000000000000000000000000000007551 123.0
LYD1_k127_5255154_0 Aldo/keto reductase family K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 294.0
LYD1_k127_5255154_1 XdhC and CoxI family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000002967 236.0
LYD1_k127_5255154_2 Seven times multi-haem cytochrome CxxCH - - - 0.0000001654 63.0
LYD1_k127_5255154_3 PRC-barrel domain - - - 0.0005076 46.0
LYD1_k127_5266081_0 AMP-binding enzyme K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002146 282.0
LYD1_k127_5266081_1 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.00000000000000000000000000000000004043 152.0
LYD1_k127_5270462_0 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005783 573.0
LYD1_k127_5270462_1 ABC transporter K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001367 259.0
LYD1_k127_5277764_0 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 387.0
LYD1_k127_5277764_1 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 372.0
LYD1_k127_5277764_2 Ion channel K10716 - - 0.0000000000000000000000000000000000000000002892 165.0
LYD1_k127_5291322_0 Elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 530.0
LYD1_k127_5291322_1 - - - - 0.000000000000000000000000000000000000000000000199 186.0
LYD1_k127_5295268_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 5.484e-224 709.0
LYD1_k127_5295268_1 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000009762 175.0
LYD1_k127_5316807_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 3.199e-222 698.0
LYD1_k127_5316807_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 504.0
LYD1_k127_5316807_10 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000004497 129.0
LYD1_k127_5316807_11 Alpha/beta hydrolase family - - - 0.00000000000000000000000000005704 127.0
LYD1_k127_5316807_12 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000005064 111.0
LYD1_k127_5316807_13 - - - - 0.0000000000000000000005913 97.0
LYD1_k127_5316807_14 HlyD membrane-fusion protein of T1SS - - - 0.000000000000000002385 98.0
LYD1_k127_5316807_15 23S rRNA-intervening sequence protein - - - 0.000000000005811 68.0
LYD1_k127_5316807_16 ATPase activity - - - 0.0000000002174 72.0
LYD1_k127_5316807_17 pfam php K07053 - 3.1.3.97 0.00002307 55.0
LYD1_k127_5316807_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 396.0
LYD1_k127_5316807_3 4Fe-4S binding domain K02572,K02573,K02574,K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 322.0
LYD1_k127_5316807_4 TIGRFAM Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004338 301.0
LYD1_k127_5316807_5 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 295.0
LYD1_k127_5316807_6 TIGRFAM deoxyguanosinetriphosphate triphosphohydrolase K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004079 280.0
LYD1_k127_5316807_7 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000003721 240.0
LYD1_k127_5316807_8 BON domain - - - 0.0000000000000000000000000000000000000004673 157.0
LYD1_k127_5316807_9 PBS lyase HEAT-like repeat - - - 0.000000000000000000000000000000004838 146.0
LYD1_k127_5340032_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 388.0
LYD1_k127_5340032_1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000001023 232.0
LYD1_k127_5359319_0 TIGRFAM molybdenum cofactor synthesis domain K03750,K07219 - 2.10.1.1 3.114e-196 631.0
LYD1_k127_5359319_1 PFAM Aldehyde ferredoxin oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005561 535.0
LYD1_k127_5359319_2 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 376.0
LYD1_k127_5359319_3 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009152 365.0
LYD1_k127_5359319_4 TIGRFAM DNA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006539 267.0
LYD1_k127_5359319_5 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000002491 252.0
LYD1_k127_5359319_6 Tetratricopeptide repeat protein - - - 0.0000000000000000000000000000000000000000000000000000001338 214.0
LYD1_k127_5359319_7 PFAM amino acid-binding ACT domain protein - - - 0.000000000000000000000000000000000000000000000001382 179.0
LYD1_k127_5359319_8 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000002597 129.0
LYD1_k127_5359319_9 TIGRFAM cell division ATP-binding protein FtsE K09812 - - 0.00000000000000008204 83.0
LYD1_k127_5367205_0 cAMP biosynthetic process K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 337.0
LYD1_k127_5369754_0 ADP-glyceromanno-heptose 6-epimerase activity K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005666 327.0
LYD1_k127_5369754_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009138 272.0
LYD1_k127_5369754_2 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001894 274.0
LYD1_k127_5395476_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 3.855e-258 804.0
LYD1_k127_5395476_1 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 597.0
LYD1_k127_5395476_2 SAICAR synthetase K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 387.0
LYD1_k127_5395476_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000000000001352 158.0
LYD1_k127_5395476_4 PFAM Colicin V production K03558 - - 0.000000000000001121 84.0
LYD1_k127_5395476_5 PFAM helix-turn-helix, Fis-type - - - 0.0000000351 58.0
LYD1_k127_5404839_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 441.0
LYD1_k127_5404839_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 347.0
LYD1_k127_5404839_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000002983 246.0
LYD1_k127_5404839_3 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000005001 111.0
LYD1_k127_5426316_0 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000002653 148.0
LYD1_k127_5426316_1 - - - - 0.0000000000000000000368 102.0
LYD1_k127_5426316_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000004524 76.0
LYD1_k127_5426316_3 - - - - 0.000000566 54.0
LYD1_k127_5426316_4 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000007562 48.0
LYD1_k127_5427944_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 510.0
LYD1_k127_5427944_1 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 490.0
LYD1_k127_5427944_2 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 312.0
LYD1_k127_5435472_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 400.0
LYD1_k127_5435472_1 PFAM Peptidase M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001046 292.0
LYD1_k127_5435472_2 Cytidylyltransferase-like K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000003096 204.0
LYD1_k127_5435472_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000001138 175.0
LYD1_k127_5435472_4 COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.00000000000000000000000000000000000001754 155.0
LYD1_k127_5435472_5 regulatory protein, MerR - - - 0.0000000000000000000000004238 108.0
LYD1_k127_5435472_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141 - 0.0000000000009967 76.0
LYD1_k127_5435472_8 Belongs to the ompA family K03286 - - 0.00005796 52.0
LYD1_k127_5448493_0 peptidase M20 - - - 4.432e-209 670.0
LYD1_k127_5448493_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002524 278.0
LYD1_k127_5448493_2 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.0000000000000000000003354 97.0
LYD1_k127_5468389_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 599.0
LYD1_k127_5468389_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 323.0
LYD1_k127_5468389_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 322.0
LYD1_k127_5468389_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001512 257.0
LYD1_k127_5468389_4 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000114 249.0
LYD1_k127_5468389_5 SNARE associated Golgi protein K03975,K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000003805 226.0
LYD1_k127_5468389_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000001357 205.0
LYD1_k127_5468389_7 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000001899 198.0
LYD1_k127_5468389_8 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000004183 181.0
LYD1_k127_5468389_9 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000001108 165.0
LYD1_k127_5474015_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 518.0
LYD1_k127_5474015_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 447.0
LYD1_k127_5474015_10 Metallo-beta-lactamase superfamily - - - 0.0000101 57.0
LYD1_k127_5474015_2 Part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K02008 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000101 268.0
LYD1_k127_5474015_3 PFAM cobalamin (vitamin B12) biosynthesis CbiM K02007 - - 0.000000000000000000000000000000000000000000000000008845 191.0
LYD1_k127_5474015_4 hydrolase of the alpha beta K07018 - - 0.0000000000000000000000000000000000000000000095 169.0
LYD1_k127_5474015_5 PFAM 4Fe-4S - - - 0.0000000000000000000000000000000000000716 157.0
LYD1_k127_5474015_6 Cobalt transport protein K02008 - - 0.000000000000000000000000000003726 129.0
LYD1_k127_5474015_7 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.00000000000000001249 85.0
LYD1_k127_5474015_8 FAD dependent oxidoreductase - - - 0.0000002017 53.0
LYD1_k127_5474015_9 MgtE intracellular - - - 0.0000002911 56.0
LYD1_k127_5482692_0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 405.0
LYD1_k127_5482692_1 Catalyzes the conversion of dihydroorotate to orotate K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 353.0
LYD1_k127_5482692_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001579 255.0
LYD1_k127_5482692_3 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000151 239.0
LYD1_k127_5482692_4 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000003799 207.0
LYD1_k127_5482692_5 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.00000000000000000000000000000000000000000000000000001342 198.0
LYD1_k127_5482831_0 alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 1.582e-206 657.0
LYD1_k127_5482831_1 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005249 342.0
LYD1_k127_5482831_2 Evidence 4 Homologs of previously reported genes of - - - 0.00000108 53.0
LYD1_k127_5494094_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0 1043.0
LYD1_k127_5494094_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 1.145e-205 647.0
LYD1_k127_5494094_10 Beta-lactamase - - - 0.0000000000000000001365 100.0
LYD1_k127_5494094_12 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000579 83.0
LYD1_k127_5494094_13 Cupin 2, conserved barrel domain protein - - - 0.00004794 53.0
LYD1_k127_5494094_2 PFAM Beta-lactamase K18988 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 486.0
LYD1_k127_5494094_3 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 432.0
LYD1_k127_5494094_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006138 331.0
LYD1_k127_5494094_5 PhoQ Sensor K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 312.0
LYD1_k127_5494094_6 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000002627 222.0
LYD1_k127_5494094_7 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000003881 219.0
LYD1_k127_5494094_9 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000005343 98.0
LYD1_k127_5499253_0 Two component regulator propeller - - - 7.997e-195 646.0
LYD1_k127_5499253_1 Methyltransferase FkbM domain - - - 0.00000000000000000002815 99.0
LYD1_k127_5518890_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 431.0
LYD1_k127_5518890_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 399.0
LYD1_k127_5518890_2 Major facilitator Superfamily K08178 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 310.0
LYD1_k127_5518890_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000003636 167.0
LYD1_k127_5518890_4 Heat shock 70 kDa protein K04043 - - 0.00000000000000001332 88.0
LYD1_k127_5518890_5 - - - - 0.0000000000000002415 89.0
LYD1_k127_552413_0 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003111 257.0
LYD1_k127_552413_1 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000000001778 214.0
LYD1_k127_554273_0 PFAM Peptidase S41 K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000531 229.0
LYD1_k127_554273_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000003042 223.0
LYD1_k127_554273_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000003961 107.0
LYD1_k127_5566939_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 506.0
LYD1_k127_5566939_1 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 456.0
LYD1_k127_5566939_2 PFAM Aldehyde ferredoxin oxidoreductase K03738 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016614,GO:0030151,GO:0033719,GO:0043167,GO:0043169,GO:0043546,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071944,GO:0097159,GO:1901363 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004638 338.0
LYD1_k127_5566939_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.00000000000000000000000000000000000000000000000000003681 190.0
LYD1_k127_5566939_4 - - - - 0.0000000000000000000000000000000000000000000000000001107 200.0
LYD1_k127_5566939_5 Dioxygenase - - - 0.0000000000000000000000000000000000000000000004968 177.0
LYD1_k127_5566939_6 peptidase inhibitor activity - - - 0.000000000000000000000000000000000000000000002394 171.0
LYD1_k127_5566939_7 Large family of predicted nucleotide-binding domains - - - 0.0000000000000000000000000000000006061 138.0
LYD1_k127_5566939_8 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000007921 57.0
LYD1_k127_5573078_0 PFAM natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 495.0
LYD1_k127_5573078_1 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 360.0
LYD1_k127_5573078_2 MgtE intracellular N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001988 280.0
LYD1_k127_5573078_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002133 247.0
LYD1_k127_5573078_4 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000004608 196.0
LYD1_k127_5573078_6 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.00000000000000000000000000000001356 138.0
LYD1_k127_5573078_7 Cytochrome c554 and c-prime - - - 0.000000000000000001329 100.0
LYD1_k127_5582116_0 Enoyl-CoA hydratase/isomerase K07539 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 2.057e-227 707.0
LYD1_k127_5582116_1 C-terminus of AA_permease K03294 - - 8.282e-222 697.0
LYD1_k127_5582116_10 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000003073 226.0
LYD1_k127_5582116_11 histidine kinase dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000008294 210.0
LYD1_k127_5582116_12 helix_turn_helix, Lux Regulon K11618 - - 0.0000000000000000000000000000000000000000000000000005509 192.0
LYD1_k127_5582116_13 sptr putative - - - 0.0000000000000000756 82.0
LYD1_k127_5582116_2 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 3.142e-202 643.0
LYD1_k127_5582116_3 Malic enzyme, NAD binding domain K00027,K00029 - 1.1.1.38,1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 598.0
LYD1_k127_5582116_4 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 612.0
LYD1_k127_5582116_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 355.0
LYD1_k127_5582116_6 transposase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 345.0
LYD1_k127_5582116_7 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 318.0
LYD1_k127_5582116_8 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 330.0
LYD1_k127_5582116_9 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009466 262.0
LYD1_k127_5595770_0 PFAM Magnesium chelatase, ChlI subunit K07391 - - 5.711e-198 628.0
LYD1_k127_5602032_0 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000016 281.0
LYD1_k127_5602032_1 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000007194 216.0
LYD1_k127_5602032_2 sulfur carrier activity - - - 0.0000000000000000000000004827 108.0
LYD1_k127_5602032_3 TOBE domain - - - 0.00000000000000001251 85.0
LYD1_k127_5602032_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000189 50.0
LYD1_k127_5603654_0 peptidase S9 prolyl oligopeptidase active site K01278 - 3.4.14.5 2.415e-211 676.0
LYD1_k127_5603654_1 Tricorn protease C1 domain K08676 - - 7.149e-202 639.0
LYD1_k127_5603654_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00135,K00146,K07248 - 1.2.1.16,1.2.1.20,1.2.1.21,1.2.1.22,1.2.1.39,1.2.1.79 0.000000000002743 72.0
LYD1_k127_562400_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.00000006961 61.0
LYD1_k127_562400_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.00001553 55.0
LYD1_k127_5626230_0 binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1550.0
LYD1_k127_5626230_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738,K19515 - 1.2.7.5 3.044e-227 709.0
LYD1_k127_5626230_2 Cysteine-rich domain - - - 6.479e-197 618.0
LYD1_k127_5626230_3 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738,K19515 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 370.0
LYD1_k127_5626230_4 4fe-4S ferredoxin, iron-sulfur binding domain protein K19516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 293.0
LYD1_k127_5626230_5 Acetyltransferase (GNAT) family - - - 0.00000000000000000004039 98.0
LYD1_k127_5628766_0 Belongs to the type-B carboxylesterase lipase family K03929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 418.0
LYD1_k127_5628766_1 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00394 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 410.0
LYD1_k127_5628766_2 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 394.0
LYD1_k127_5628766_3 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000002058 115.0
LYD1_k127_563299_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001795 239.0
LYD1_k127_563299_1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000002548 218.0
LYD1_k127_563299_2 metal cluster binding - - - 0.00000000000000000000000792 108.0
LYD1_k127_563299_3 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.000000000000000002453 87.0
LYD1_k127_563299_4 Cupin 2, conserved barrel domain protein - - - 0.000000000001043 74.0
LYD1_k127_563299_5 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0001465 48.0
LYD1_k127_5682556_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K09181 - - 0.0 1231.0
LYD1_k127_5682556_1 Dihydroorotate dehydrogenase K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 452.0
LYD1_k127_5682556_2 RNA binding K06959 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 293.0
LYD1_k127_5682556_3 multi-organism process - - - 0.000000000000000000000000000000000000724 150.0
LYD1_k127_570234_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 2.144e-281 874.0
LYD1_k127_570234_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 1.261e-272 847.0
LYD1_k127_570234_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 546.0
LYD1_k127_570234_3 Homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006797 462.0
LYD1_k127_570234_4 aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000006379 218.0
LYD1_k127_570234_5 PFAM HNH endonuclease - - - 0.0000000000000000000000000000000000000002396 169.0
LYD1_k127_570234_6 YCII-related domain K09780 - - 0.00000000000000000000153 96.0
LYD1_k127_570234_7 energy transducer activity K03832 - - 0.0000000001168 74.0
LYD1_k127_5707719_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 552.0
LYD1_k127_5707719_1 PFAM MmgE PrpD - - - 0.0000000000000000000000000000000000000000000000000000000001458 210.0
LYD1_k127_5707719_2 reductase K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.000000000000000000000000000000000000000002483 166.0
LYD1_k127_5707719_3 MarR family transcriptional regulator - - - 0.000000000000000000000000000005924 120.0
LYD1_k127_5713385_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 486.0
LYD1_k127_5713385_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000004102 133.0
LYD1_k127_5713385_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000001396 102.0
LYD1_k127_5718497_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 391.0
LYD1_k127_5718497_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 366.0
LYD1_k127_5718497_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000006832 253.0
LYD1_k127_5718497_3 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000001103 228.0
LYD1_k127_5718497_4 PA14 - - - 0.00000000000000000000000000000000003292 152.0
LYD1_k127_5718497_5 FecR protein - - - 0.0000000000000000000000001638 121.0
LYD1_k127_5718497_6 23S rRNA-intervening sequence protein - - - 0.000000000002212 71.0
LYD1_k127_5718497_7 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.0000000008966 61.0
LYD1_k127_5720888_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 3.451e-292 905.0
LYD1_k127_5720888_1 C-terminus of AA_permease K03294 - - 4.604e-232 730.0
LYD1_k127_5720888_2 PFAM Cys Met metabolism K01739,K01760,K01761 - 2.5.1.48,4.4.1.11,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 522.0
LYD1_k127_5720888_3 Glucose inhibited division protein A - - - 0.000000000000000000000000000000000000000000000000000000000000000000002327 253.0
LYD1_k127_5720888_4 PQQ-like domain - - - 0.00000000000000000000000000000000000002642 150.0
LYD1_k127_5720888_5 4Fe-4S binding domain - - - 0.000000000000000000000000000000003054 144.0
LYD1_k127_5739338_0 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 1.754e-194 609.0
LYD1_k127_5739338_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 312.0
LYD1_k127_5739338_2 - - - - 0.0000002462 52.0
LYD1_k127_5739338_3 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00004878 52.0
LYD1_k127_574663_0 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 391.0
LYD1_k127_574663_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 335.0
LYD1_k127_574663_2 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 328.0
LYD1_k127_574663_3 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.000000000000000000000000000000000000000000000000000000000276 211.0
LYD1_k127_574663_4 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.00000000000000000000000000000551 125.0
LYD1_k127_574663_5 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00008326 45.0
LYD1_k127_5760745_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016614,GO:0030151,GO:0033719,GO:0043167,GO:0043169,GO:0043546,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071944,GO:0097159,GO:1901363 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 405.0
LYD1_k127_5760745_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000003377 229.0
LYD1_k127_5760745_2 Transcriptional regulator K13641 - - 0.00000000000000000000000000000000000001593 155.0
LYD1_k127_5760745_3 - - - - 0.000000000000000000000000000000001427 132.0
LYD1_k127_5760745_4 - - - - 0.000000000007444 70.0
LYD1_k127_5760745_5 Evidence 4 Homologs of previously reported genes of - - - 0.00000000304 61.0
LYD1_k127_5814460_0 Gram-negative-bacterium-type cell wall biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000009827 228.0
LYD1_k127_5814460_1 Chain length determinant protein - - - 0.000000000000000000000000000000000002365 155.0
LYD1_k127_5814460_2 COG0489 ATPases involved in chromosome partitioning K00903 - 2.7.10.2 0.000000000000000174 86.0
LYD1_k127_5833996_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 501.0
LYD1_k127_5833996_1 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 463.0
LYD1_k127_5833996_2 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 365.0
LYD1_k127_5833996_3 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008511 283.0
LYD1_k127_5833996_4 NAD(P)H-binding K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000003799 255.0
LYD1_k127_5833996_5 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000001412 238.0
LYD1_k127_5833996_6 - - - - 0.000000000000000000000000009148 111.0
LYD1_k127_5840527_0 Domain of unknown function (DUF4339) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 456.0
LYD1_k127_5840527_1 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005114 384.0
LYD1_k127_5840527_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 293.0
LYD1_k127_5840527_3 peptide-methionine (S)-S-oxide reductase activity K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006565 291.0
LYD1_k127_5840527_4 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001452 274.0
LYD1_k127_5840527_5 Uncharacterised MFS-type transporter YbfB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006211 263.0
LYD1_k127_5840527_6 PFAM Auxin Efflux Carrier K07088 - - 0.000000000000000000000000000000000000008778 157.0
LYD1_k127_5840527_7 lysine biosynthetic process via aminoadipic acid - - - 0.0000001062 57.0
LYD1_k127_5840527_8 Intracellular proteinase inhibitor - - - 0.000004562 58.0
LYD1_k127_5869893_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 436.0
LYD1_k127_5869893_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409,K03070 GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 340.0
LYD1_k127_5869893_2 Glycosyltransferase like family 2 - - - 0.00000000000000000214 87.0
LYD1_k127_5869893_3 PFAM periplasmic binding protein K02016 - - 0.0000000000000007428 84.0
LYD1_k127_5875137_0 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 482.0
LYD1_k127_5875137_1 lactoylglutathione lyase activity - - - 0.0000001813 63.0
LYD1_k127_5893725_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000607 441.0
LYD1_k127_5893725_1 Methylene-tetrahydrofolate reductase C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 310.0
LYD1_k127_5893725_2 Conserved region in glutamate synthase - - - 0.000000000000000000000000000000000000000000000000000009077 193.0
LYD1_k127_5893725_3 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000004971 133.0
LYD1_k127_5917728_0 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009936 314.0
LYD1_k127_5917728_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000005124 222.0
LYD1_k127_5917728_2 - - - - 0.0000007887 56.0
LYD1_k127_5932937_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 350.0
LYD1_k127_5932937_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 329.0
LYD1_k127_595004_0 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 386.0
LYD1_k127_595004_1 thiamine-containing compound biosynthetic process K02051 - - 0.00000000000000000000000000000000000000000000000009496 198.0
LYD1_k127_595004_2 Phage shock protein A K03969 - - 0.00003204 55.0
LYD1_k127_5963178_0 PFAM Radical SAM superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 545.0
LYD1_k127_5963178_1 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003356 243.0
LYD1_k127_5963178_2 GtrA-like protein - - - 0.000000000000000007315 93.0
LYD1_k127_598377_0 4-Hydroxyphenylpyruvate dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005543 435.0
LYD1_k127_598377_1 enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000002552 211.0
LYD1_k127_598377_2 - - - - 0.0000000000000000000000000000000001134 138.0
LYD1_k127_598377_3 (Rhomboid) family - - - 0.0000000002008 61.0
LYD1_k127_5988726_0 GXGXG motif K00265 - 1.4.1.13,1.4.1.14 0.0 2275.0
LYD1_k127_5988726_1 Acetyl-CoA hydrolase/transferase N-terminal domain K01067,K18118 - 2.8.3.18,3.1.2.1 2.957e-253 789.0
LYD1_k127_5988726_2 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 1.602e-241 770.0
LYD1_k127_5988726_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 2.449e-228 714.0
LYD1_k127_5988726_4 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009538 423.0
LYD1_k127_5988726_5 CO dehydrogenase flavoprotein C-terminal domain K11178 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 342.0
LYD1_k127_5988726_6 2Fe-2S -binding domain K13483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009311 246.0
LYD1_k127_5999174_0 glucose-1-phosphate adenylyltransferase K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 465.0
LYD1_k127_5999174_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 412.0
LYD1_k127_5999174_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K14161 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 409.0
LYD1_k127_5999174_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 334.0
LYD1_k127_5999174_4 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006446 326.0
LYD1_k127_5999174_5 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000004104 261.0
LYD1_k127_5999174_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000006391 261.0
LYD1_k127_5999174_7 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000002621 240.0
LYD1_k127_5999174_8 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000001719 235.0
LYD1_k127_5999174_9 belongs to the PRA-CH family K01496,K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000306 151.0
LYD1_k127_6009262_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 471.0
LYD1_k127_6009262_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 301.0
LYD1_k127_601231_0 component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000001711 222.0
LYD1_k127_601231_1 Belongs to the ompA family - - - 0.0000000000000000000009188 108.0
LYD1_k127_603053_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000003812 201.0
LYD1_k127_605035_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 6.967e-226 721.0
LYD1_k127_605035_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 584.0
LYD1_k127_605035_2 TonB-dependent Receptor Plug K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 333.0
LYD1_k127_605035_3 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000001982 95.0
LYD1_k127_6057660_0 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 511.0
LYD1_k127_6057660_1 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 445.0
LYD1_k127_6057660_2 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00042 - 1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 419.0
LYD1_k127_6057660_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007485 269.0
LYD1_k127_6057660_5 Cytochrome c554 and c-prime - - - 0.000000000000000000000001159 119.0
LYD1_k127_6057660_6 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000009374 59.0
LYD1_k127_6057660_7 Aldose 1-epimerase - - - 0.000000005287 59.0
LYD1_k127_6057660_8 Metallo-beta-lactamase superfamily - - - 0.0001764 46.0
LYD1_k127_60690_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 522.0
LYD1_k127_60690_1 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 421.0
LYD1_k127_60690_2 Methyltransferase domain - - - 0.0000000000000000000000000000000001197 136.0
LYD1_k127_60690_3 - - - - 0.00000000000000002358 84.0
LYD1_k127_6069572_0 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 6.785e-266 828.0
LYD1_k127_6069572_1 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001006 265.0
LYD1_k127_6069572_2 endonuclease III K01142,K10773 - 3.1.11.2,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000001865 259.0
LYD1_k127_6069572_3 transcription factor binding - - - 0.0000000000000000000000000000000008743 133.0
LYD1_k127_6069572_4 energy transducer activity K03832 - - 0.0002928 51.0
LYD1_k127_6077584_0 Glutamate synthase - - - 8.268e-212 670.0
LYD1_k127_6077584_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002634 610.0
LYD1_k127_6077584_2 Nitrite and sulphite reductase 4Fe-4S - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 413.0
LYD1_k127_6077584_3 Bacterial regulatory protein, Fis family K02584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005274 332.0
LYD1_k127_6077584_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000002265 228.0
LYD1_k127_6077584_5 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000002004 200.0
LYD1_k127_6077584_6 Dimerisation domain - - - 0.0000000000000000000000000000000001483 139.0
LYD1_k127_6077584_7 GXGXG motif - - - 0.0000000000000000000000000000001573 126.0
LYD1_k127_6077584_8 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000001741 78.0
LYD1_k127_6089008_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.0 1126.0
LYD1_k127_6089008_1 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 333.0
LYD1_k127_6089008_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000001895 169.0
LYD1_k127_6089008_3 CS domain K13993 - - 0.00000000000000000000000000000000153 134.0
LYD1_k127_6089008_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000002729 95.0
LYD1_k127_6089008_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000001243 91.0
LYD1_k127_6089008_6 An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigK. ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut extracytoplasmically (site-1 protease, S1P), then within the membrane itself (site-2 protease, S2P, Rip1), while cytoplasmic proteases finish degrading the regulatory protein, liberating the sigma factor - - - 0.0009175 51.0
LYD1_k127_6093960_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15372 - 2.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 608.0
LYD1_k127_6093960_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 383.0
LYD1_k127_6093960_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000003898 85.0
LYD1_k127_6108072_0 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 2.818e-203 642.0
LYD1_k127_6109231_0 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000004613 229.0
LYD1_k127_6109231_1 Transposase K07491 - - 0.00000000000000000000000000000000000000000000000494 176.0
LYD1_k127_6109231_2 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000002159 101.0
LYD1_k127_6112464_0 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 421.0
LYD1_k127_6112464_1 Periplasmic binding protein LacI transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 359.0
LYD1_k127_6112464_2 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 329.0
LYD1_k127_6112464_3 COG0524 Sugar kinases, ribokinase K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000117 217.0
LYD1_k127_6112464_4 Putative cell wall binding repeat 2 K01448 - 3.5.1.28 0.00000000003246 72.0
LYD1_k127_6120919_0 AcrB/AcrD/AcrF family K03296 - - 4.12e-231 737.0
LYD1_k127_6120919_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 388.0
LYD1_k127_6120919_2 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000352 217.0
LYD1_k127_6120919_3 PFAM Methylated-DNA- protein -cysteine S-methyltransferase DNA binding K07443 - - 0.00000000000000000000001747 102.0
LYD1_k127_6120919_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000006315 111.0
LYD1_k127_6120919_5 Bacterial regulatory proteins, tetR family - - - 0.000000000000005832 83.0
LYD1_k127_6120919_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000001904 65.0
LYD1_k127_6125589_0 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000000000000841 107.0
LYD1_k127_6125589_1 Prokaryotic N-terminal methylation motif K02456,K02650 - - 0.000000009908 63.0
LYD1_k127_6154583_0 Radical SAM superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 364.0
LYD1_k127_6154583_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001411 233.0
LYD1_k127_6154583_2 homoserine transmembrane transporter activity K06600,K06895 - - 0.000000000000000000000000000000000000000000000000008043 187.0
LYD1_k127_6154583_3 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.0000000000000000001845 90.0
LYD1_k127_6154583_4 Psort location Cytoplasmic, score 9.97 K00847 - 2.7.1.4 0.0000000000003057 72.0
LYD1_k127_6155240_0 Two component regulator propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006851 285.0
LYD1_k127_6155240_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000007363 118.0
LYD1_k127_6155240_2 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000158 108.0
LYD1_k127_6160589_0 response regulator K10943 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 434.0
LYD1_k127_6160589_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 374.0
LYD1_k127_6160589_2 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000004279 216.0
LYD1_k127_6160589_3 protein domain (DUF2202) - - - 0.00000000000000000000000000000000000000000000009184 177.0
LYD1_k127_6160589_4 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.000000000000000000000000000000000002272 153.0
LYD1_k127_6160589_5 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.000000000000000000000324 103.0
LYD1_k127_6160589_6 Putative heavy-metal chelation K09138 - - 0.0002177 44.0
LYD1_k127_6171382_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 414.0
LYD1_k127_6171382_1 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009904 276.0
LYD1_k127_6171382_2 3'-5' exonuclease K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000003067 273.0
LYD1_k127_6171382_3 protein histidine kinase activity K02484,K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000001705 245.0
LYD1_k127_6171382_4 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000003166 224.0
LYD1_k127_6171382_5 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000000000009576 225.0
LYD1_k127_6171382_6 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000000000001143 214.0
LYD1_k127_6171382_7 C4-type zinc ribbon domain K07164 - - 0.00000000000000000000000000004126 125.0
LYD1_k127_6171382_8 glycosyl transferase family 2 - - - 0.000000000000000000004831 103.0
LYD1_k127_6183060_0 NADH flavin oxidoreductase NADH oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361 519.0
LYD1_k127_6183060_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 429.0
LYD1_k127_6183060_10 Cupin 2, conserved barrel domain protein - - - 0.000000009773 62.0
LYD1_k127_6183060_2 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K20038 - 2.3.1.54,4.3.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 384.0
LYD1_k127_6183060_3 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003024 297.0
LYD1_k127_6183060_4 glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000005063 265.0
LYD1_k127_6183060_5 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000005383 196.0
LYD1_k127_6183060_6 - - - - 0.000000000000000000000000000007969 126.0
LYD1_k127_6183060_7 PFAM secretion protein HlyD family protein K02005,K02022 - - 0.000000000000000000000000005671 123.0
LYD1_k127_6183060_8 Cupin 2, conserved barrel domain protein - - - 0.000000000000001795 82.0
LYD1_k127_6183060_9 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.000000004726 69.0
LYD1_k127_6194408_0 Sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 359.0
LYD1_k127_6194408_1 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.0000000000000000000000000000000000000000000000000000000000553 213.0
LYD1_k127_6211536_0 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 551.0
LYD1_k127_6211536_2 Pilus assembly protein PilX - - - 0.0000000000443 75.0
LYD1_k127_6211536_3 Type II transport protein GspH K08084,K08085 - - 0.0000276 54.0
LYD1_k127_6211536_4 Pilus assembly protein PilX K02673 - - 0.00007076 55.0
LYD1_k127_6219351_0 Pyruvate formate lyase-like K00656,K20038 - 2.3.1.54,4.3.99.4 1.513e-240 754.0
LYD1_k127_6219351_1 glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 382.0
LYD1_k127_6219351_2 YdjC-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001079 269.0
LYD1_k127_6219351_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000249 229.0
LYD1_k127_6219351_4 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000000000000000000000000000000000001794 198.0
LYD1_k127_6219351_6 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000001054 99.0
LYD1_k127_6219351_7 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000127 110.0
LYD1_k127_6219351_8 Protein of unknown function (DUF2752) - - - 0.000000008847 63.0
LYD1_k127_6231638_0 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 413.0
LYD1_k127_6231638_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 402.0
LYD1_k127_6231638_2 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002064 282.0
LYD1_k127_6231638_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000001751 222.0
LYD1_k127_6231638_4 - - - - 0.0000000000000000000000000000000000000000000000001066 188.0
LYD1_k127_6231638_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000005292 170.0
LYD1_k127_6234987_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 412.0
LYD1_k127_6234987_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000002768 172.0
LYD1_k127_6234987_2 Tetratricopeptide repeat - - - 0.000001784 61.0
LYD1_k127_6241980_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 546.0
LYD1_k127_6258284_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000008702 267.0
LYD1_k127_625951_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000312 266.0
LYD1_k127_625951_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000001004 168.0
LYD1_k127_6280406_0 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 473.0
LYD1_k127_6280406_1 Asparaginase, N-terminal K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000005054 252.0
LYD1_k127_6280406_2 DinB family - - - 0.00000000000001224 80.0
LYD1_k127_6296337_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 471.0
LYD1_k127_6296337_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000002431 254.0
LYD1_k127_6296337_2 4 iron, 4 sulfur cluster binding K18356 - 1.2.1.58 0.000000000000000000000000000000000000000000000000000000001001 211.0
LYD1_k127_6296337_3 DEAD DEAH box helicase K03654 - 3.6.4.12 0.00006493 48.0
LYD1_k127_62972_0 Putative restriction endonuclease - - - 0.000000000000000000000000000000000000000000000000000009579 194.0
LYD1_k127_62972_1 NmrA-like family - - - 0.00000000000000000000008952 98.0
LYD1_k127_62972_2 NmrA-like family - - - 0.000000001038 60.0
LYD1_k127_62972_3 NmrA-like family - - - 0.0008483 42.0
LYD1_k127_6300198_0 Type II secretion system (T2SS), protein K K02460 - - 0.00000000000000000000000000000000000000000001375 178.0
LYD1_k127_6300198_1 PFAM type II secretion system protein G K02456 - - 0.0000000000000000000000000000000000000000006734 160.0
LYD1_k127_6300198_2 PFAM Fimbrial assembly K02461 - - 0.00000000000003816 85.0
LYD1_k127_6300198_3 General secretion pathway protein H K02457 - - 0.0000000004084 66.0
LYD1_k127_6300198_4 Type II secretion system K02455 - - 0.00000004475 55.0
LYD1_k127_6300198_6 General secretion pathway protein K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776 - 0.000001348 59.0
LYD1_k127_6300198_7 Prokaryotic N-terminal methylation motif K02458 - - 0.0004618 50.0
LYD1_k127_6312008_0 response regulator K02481,K07715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 467.0
LYD1_k127_6312008_1 Domains HisKA, HATPase_c - - - 0.0000000000000000000000000000000000000000000000000000000000008115 220.0
LYD1_k127_6312008_2 oxidoreductase activity K07114 - - 0.000000000000000000008926 104.0
LYD1_k127_6367717_0 oxoglutarate dehydrogenase (succinyl-transferring) activity K00164,K01616 GO:0000287,GO:0003674,GO:0003824,GO:0004591,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006103,GO:0008150,GO:0008152,GO:0008683,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016624,GO:0016740,GO:0016744,GO:0016829,GO:0016830,GO:0016831,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0019842,GO:0022900,GO:0030312,GO:0030976,GO:0032991,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0045333,GO:0046872,GO:0048037,GO:0050439,GO:0050662,GO:0051186,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:1901363,GO:1901681,GO:1902494,GO:1990204,GO:1990234 1.2.4.2,4.1.1.71 5.36e-315 984.0
LYD1_k127_6367717_1 glycosyl transferase group 1 K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005176 454.0
LYD1_k127_6367717_2 Periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000003598 121.0
LYD1_k127_6382832_0 Cytochrome c - - - 0.0000000000000000000000000000000003443 136.0
LYD1_k127_6382832_1 - - - - 0.0000000000000000004091 96.0
LYD1_k127_6382832_2 Outer membrane efflux protein K12340 - - 0.0000000001736 72.0
LYD1_k127_6386533_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 535.0
LYD1_k127_6386533_1 PFAM Type II secretion system F domain K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 423.0
LYD1_k127_6386533_2 PFAM Type II secretion system protein E K02454,K02504,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008222 329.0
LYD1_k127_6386533_3 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000008958 260.0
LYD1_k127_6393313_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 7.11e-316 977.0
LYD1_k127_6393313_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 459.0
LYD1_k127_6393313_10 polyketide cyclase - - - 0.00000000000000000000000000000000000000003343 157.0
LYD1_k127_6393313_11 Sulfatase - - - 0.0000000000000000000000000000000000000001501 170.0
LYD1_k127_6393313_12 lactoylglutathione lyase activity K01759,K05606,K08234 - 4.4.1.5,5.1.99.1 0.0000000000000000000000000000000002078 137.0
LYD1_k127_6393313_13 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000003292 73.0
LYD1_k127_6393313_14 PFAM major facilitator superfamily MFS_1 - - - 0.00000008711 64.0
LYD1_k127_6393313_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 425.0
LYD1_k127_6393313_3 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 386.0
LYD1_k127_6393313_4 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 338.0
LYD1_k127_6393313_5 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 333.0
LYD1_k127_6393313_6 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 325.0
LYD1_k127_6393313_7 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009503 250.0
LYD1_k127_6393313_8 denitrification pathway K15876 - - 0.00000000000000000000000000000000000000000000000000000009201 198.0
LYD1_k127_6393313_9 PFAM Hemerythrin HHE cation binding domain protein - - - 0.00000000000000000000000000000000000000000004571 167.0
LYD1_k127_6406377_0 Phosphate acyltransferases K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 610.0
LYD1_k127_6406598_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 3.126e-254 792.0
LYD1_k127_6406598_1 Biotin carboxylase K01961,K01965 - 6.3.4.14,6.4.1.2,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000001033 233.0
LYD1_k127_6418268_0 Oligoendopeptidase f - - - 8.356e-212 675.0
LYD1_k127_6418268_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 301.0
LYD1_k127_6418268_2 Major Facilitator Superfamily - - - 0.000000000004712 78.0
LYD1_k127_6427256_0 G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 502.0
LYD1_k127_6427256_1 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.000000000000000000000000116 110.0
LYD1_k127_6434114_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007962 558.0
LYD1_k127_6434114_1 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000886 458.0
LYD1_k127_6434114_2 Pirin C-terminal cupin domain K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 418.0
LYD1_k127_6437611_0 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000000000000000001488 186.0
LYD1_k127_6437611_1 - - - - 0.000000000000000000000000000000000001652 151.0
LYD1_k127_6437611_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000001259 124.0
LYD1_k127_6437611_3 mRNA binding - - - 0.000000000000000000000007941 101.0
LYD1_k127_6437611_4 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000000000003474 83.0
LYD1_k127_6437611_5 CoA-transferase family III - - - 0.00000000000003332 78.0
LYD1_k127_6437611_6 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000005462 63.0
LYD1_k127_6437611_7 positive regulation of growth - - - 0.0001037 48.0
LYD1_k127_6442551_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 429.0
LYD1_k127_6442551_1 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002921 244.0
LYD1_k127_6442551_2 dCMP deaminase activity K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000005488 216.0
LYD1_k127_6442551_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000008931 196.0
LYD1_k127_6442551_4 AAA domain - - - 0.00000000000000000000000001555 121.0
LYD1_k127_6442551_5 DNA protecting protein DprA K04096 - - 0.0000000000000000000004407 101.0
LYD1_k127_6442551_6 CYTH K05873 - 4.6.1.1 0.0000000000000000001878 93.0
LYD1_k127_6447788_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 444.0
LYD1_k127_6447788_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005909 268.0
LYD1_k127_6462633_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1105.0
LYD1_k127_6462633_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009647 269.0
LYD1_k127_6462633_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K04068,K10026 - 1.97.1.4,4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000006019 229.0
LYD1_k127_6462633_3 OPT oligopeptide transporter protein - - - 0.000000000000001501 81.0
LYD1_k127_6470028_0 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 509.0
LYD1_k127_6470028_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006644 264.0
LYD1_k127_6470028_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000001062 208.0
LYD1_k127_6470028_3 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000224 151.0
LYD1_k127_6470028_4 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000002844 110.0
LYD1_k127_6470028_5 MFS/sugar transport protein K03292,K16139 - - 0.0003507 45.0
LYD1_k127_647513_0 Protein of unknown function (DUF1009) K09949 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 297.0
LYD1_k127_647513_1 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 293.0
LYD1_k127_647513_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008780,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001096 274.0
LYD1_k127_647513_3 Stage II sporulation protein - - - 0.0000000000000000000000000001456 133.0
LYD1_k127_647513_4 TonB C terminal - - - 0.000000001959 69.0
LYD1_k127_6482951_0 Tex-like protein N-terminal domain K06959 - - 0.0 1026.0
LYD1_k127_6482951_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 2.198e-245 764.0
LYD1_k127_6482951_10 COG494 NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair General function prediction only K01515 - 3.6.1.13 0.00000000000000000000000000000000000002415 149.0
LYD1_k127_6482951_11 TIGRFAM Succinate dehydrogenase, cytochrome b556 subunit K00241 - - 0.00000000000000000000000000000000000003047 147.0
LYD1_k127_6482951_12 cell redox homeostasis K03671 - - 0.000000000000000006154 89.0
LYD1_k127_6482951_13 succinate dehydrogenase activity K00242,K00246 - - 0.00000000000002776 77.0
LYD1_k127_6482951_14 PFAM regulatory protein MarR - - - 0.000000000007355 74.0
LYD1_k127_6482951_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 345.0
LYD1_k127_6482951_3 TatD related DNase K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 317.0
LYD1_k127_6482951_4 fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 300.0
LYD1_k127_6482951_5 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008125 280.0
LYD1_k127_6482951_6 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000559 258.0
LYD1_k127_6482951_7 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000002292 241.0
LYD1_k127_6482951_8 Squalene/phytoene synthase K00801,K02291,K10208 GO:0003674,GO:0003824,GO:0004337,GO:0004659,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016740,GO:0016765,GO:0016767,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046148,GO:0071704,GO:1901576 2.5.1.21,2.5.1.32,2.5.1.96,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000001877 248.0
LYD1_k127_6482951_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000009106 241.0
LYD1_k127_6483739_0 belongs to the aldehyde dehydrogenase family K00135,K08324 GO:0001505,GO:0003674,GO:0003824,GO:0004777,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009013,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009308,GO:0009310,GO:0009445,GO:0009447,GO:0009448,GO:0009450,GO:0009987,GO:0016054,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0032787,GO:0034641,GO:0042133,GO:0042135,GO:0042402,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0072329,GO:0097164,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.2.1.16,1.2.1.20,1.2.1.24,1.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008485 562.0
LYD1_k127_6483739_1 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 535.0
LYD1_k127_6483739_2 radical SAM domain protein K15045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 498.0
LYD1_k127_6483739_3 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 440.0
LYD1_k127_6483739_4 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 327.0
LYD1_k127_6483739_5 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000002743 221.0
LYD1_k127_6483739_6 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000007481 203.0
LYD1_k127_6483739_7 Belongs to the BshC family K22136 - - 0.000000000000000000000000000000000000000000000277 177.0
LYD1_k127_6483739_8 - - - - 0.000000000000000000000000000000000000001222 158.0
LYD1_k127_6484126_0 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 337.0
LYD1_k127_6484126_1 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00394 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000008346 204.0
LYD1_k127_6492824_0 ligase activity, forming carbon-carbon bonds K07402 - - 0.0000000000000000000000000000000000000001261 154.0
LYD1_k127_6492824_1 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000004643 126.0
LYD1_k127_6492824_2 heat shock protein binding - - - 0.000002835 59.0
LYD1_k127_6492824_3 CopG antitoxin of type II toxin-antitoxin system - - - 0.000003982 53.0
LYD1_k127_6505959_0 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 294.0
LYD1_k127_6505959_1 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000482 271.0
LYD1_k127_6505959_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.00000000000000000000000000000000000000000000000000006459 198.0
LYD1_k127_6505959_3 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.000000000000000000000000000000000375 136.0
LYD1_k127_6505959_4 Phosphocarrier protein HPr K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000597 93.0
LYD1_k127_650831_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004248 347.0
LYD1_k127_650831_3 - - - - 0.0000000000000000000000000000000001026 143.0
LYD1_k127_6512740_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1094.0
LYD1_k127_6512740_1 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000001201 114.0
LYD1_k127_6550474_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000008014 228.0
LYD1_k127_6550474_1 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000003392 114.0
LYD1_k127_6550474_2 Flavodoxin-like protein K00230 - 1.3.5.3 0.000009169 55.0
LYD1_k127_6557964_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 589.0
LYD1_k127_6557964_1 MacB-like periplasmic core domain K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 361.0
LYD1_k127_6557964_2 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 337.0
LYD1_k127_6557964_3 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002503 245.0
LYD1_k127_6557964_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000000000000000000239 203.0
LYD1_k127_6557964_5 Heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000000000000000003362 181.0
LYD1_k127_6557964_6 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000001273 140.0
LYD1_k127_6557964_7 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.0000000000000000000000000004958 121.0
LYD1_k127_6568177_0 NADH:flavin oxidoreductase / NADH oxidase family K00219 - 1.3.1.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 479.0
LYD1_k127_6568177_1 PFAM MmgE PrpD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006071 411.0
LYD1_k127_6568177_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008156 343.0
LYD1_k127_6568177_3 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000001848 169.0
LYD1_k127_6568177_4 L-carnitine dehydratase bile acid-inducible protein F - - - 0.000000000000000000000000000000002006 137.0
LYD1_k127_6590359_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 5.401e-230 722.0
LYD1_k127_6590359_1 Toxic component of a toxin-antitoxin (TA) module. An RNase K07065 - - 0.000000002194 60.0
LYD1_k127_6591097_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001236 267.0
LYD1_k127_6591097_1 Belongs to the universal ribosomal protein uS5 family K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000166 230.0
LYD1_k127_6591097_2 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000004392 184.0
LYD1_k127_6591097_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000706 180.0
LYD1_k127_6591097_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000001986 171.0
LYD1_k127_6591097_5 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000000003303 163.0
LYD1_k127_6591097_6 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000004241 93.0
LYD1_k127_6591097_7 Ribosomal protein L30 K02907 - - 0.00000000000000000006547 90.0
LYD1_k127_6591506_0 Haloacid dehalogenase-like hydrolase K01838 - 5.4.2.6 0.000000000000000000000000000000000000000009163 161.0
LYD1_k127_6591506_1 TPR repeat-containing protein - - - 0.00000006709 64.0
LYD1_k127_6592377_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1150.0
LYD1_k127_6592377_1 Spore maturation protein K06373 - - 0.000000000000000000000000000000000000000000000000000000000000002785 223.0
LYD1_k127_6592377_2 PFAM Nucleoside recognition K06374 - - 0.00000000000000000000000000000000000000000000000000000000000008557 217.0
LYD1_k127_6592377_3 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000003211 141.0
LYD1_k127_6616747_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006163 321.0
LYD1_k127_6616747_1 Conserved protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 318.0
LYD1_k127_6624952_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 283.0
LYD1_k127_6624952_1 synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000145 266.0
LYD1_k127_6634689_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 588.0
LYD1_k127_6634689_1 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 511.0
LYD1_k127_6634696_0 Carboxyl transferase domain - - - 3.278e-219 693.0
LYD1_k127_6634696_1 copper-translocating P-type ATPase K17686 - 3.6.3.54 1.221e-210 664.0
LYD1_k127_6634696_2 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 498.0
LYD1_k127_6634696_3 iron ion homeostasis K03709,K04758 - - 0.00000000000000000000000000000000000000000001518 170.0
LYD1_k127_6634696_4 Methyltransferase domain - - - 0.000000000000000000002162 100.0
LYD1_k127_6648962_0 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000001795 175.0
LYD1_k127_6648962_1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.0000000000000000000000000000000001504 135.0
LYD1_k127_6648962_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000007369 108.0
LYD1_k127_6648962_3 Domain of unknown function (DUF4347) K20276 - - 0.00000003164 66.0
LYD1_k127_6648962_4 Putative zinc-finger - - - 0.00001194 55.0
LYD1_k127_6648962_6 Protein of unknown function (DUF1573) - - - 0.0003859 52.0
LYD1_k127_6659155_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009198 527.0
LYD1_k127_6659155_1 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008558 295.0
LYD1_k127_6677652_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600,K00605,K18847 - 2.1.2.1,2.1.2.10,2.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 375.0
LYD1_k127_6677652_1 - - - - 0.00000000000007685 77.0
LYD1_k127_6725483_0 phosphoglycerate kinase activity K00927,K01803 GO:0003674,GO:0003824,GO:0004618,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.2.3,5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 465.0
LYD1_k127_6725483_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 443.0
LYD1_k127_6725483_10 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000001461 143.0
LYD1_k127_6725483_11 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000001878 93.0
LYD1_k127_6725483_12 L-2-amino-thiazoline-4-carboxylic acid hydrolase - - - 0.00000000000005207 78.0
LYD1_k127_6725483_2 homoserine kinase activity K02204,K13059 - 2.7.1.162,2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 353.0
LYD1_k127_6725483_3 PFAM Organic solvent tolerance protein K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 340.0
LYD1_k127_6725483_4 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 304.0
LYD1_k127_6725483_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 295.0
LYD1_k127_6725483_6 tRNA pseudouridine synthase activity K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000001265 241.0
LYD1_k127_6725483_7 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.00000000000000000000000000000000000000000009647 167.0
LYD1_k127_6725483_8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000000000000000002287 157.0
LYD1_k127_6725483_9 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.00000000000000000000000000000000000009869 149.0
LYD1_k127_6741851_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 556.0
LYD1_k127_6741851_1 Sugar isomerase (SIS) K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 315.0
LYD1_k127_6741851_2 Stage II sporulation protein E K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000319 262.0
LYD1_k127_6745142_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009831 475.0
LYD1_k127_6751731_0 Phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 383.0
LYD1_k127_6751731_1 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000765 311.0
LYD1_k127_6751731_2 Outer membrane efflux protein - - - 0.000000000000000000000007886 109.0
LYD1_k127_6751731_3 Transcriptional regulator - - - 0.0000000000000001869 85.0
LYD1_k127_6775111_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006520,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016884,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.5.3 5e-324 1019.0
LYD1_k127_6775111_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 1.672e-194 621.0
LYD1_k127_6775111_2 CobB/CobQ-like glutamine amidotransferase domain K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000002106 261.0
LYD1_k127_6775111_3 - - - - 0.000000000000000000000000007672 120.0
LYD1_k127_6775111_4 Glycine radical K00656 - 2.3.1.54 0.000000000001294 68.0
LYD1_k127_6786961_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.0 1117.0
LYD1_k127_6786961_1 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005054 622.0
LYD1_k127_6786961_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 357.0
LYD1_k127_6786961_3 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 343.0
LYD1_k127_6786961_4 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 301.0
LYD1_k127_6786961_5 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000004162 241.0
LYD1_k127_6786961_6 Helix-turn-helix XRE-family like proteins K21498 - - 0.000000000000000000000000004887 113.0
LYD1_k127_6786961_7 SnoaL-like domain - - - 0.000000000000000000000000009302 118.0
LYD1_k127_6786961_8 Plasmid maintenance system killer K07334 - - 0.00000000000000000000003942 101.0
LYD1_k127_6786961_9 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000003567 93.0
LYD1_k127_680001_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 1.201e-266 838.0
LYD1_k127_680001_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005161 576.0
LYD1_k127_680001_10 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000001966 196.0
LYD1_k127_680001_11 Putative cyclase K07130 - 3.5.1.9 0.0000000000000000000000000000000000000000000209 168.0
LYD1_k127_680001_12 mRNA catabolic process K06950 - - 0.0000000000000000000000000000000000000001373 163.0
LYD1_k127_680001_13 Domain of unknown function (DUF4445) - - - 0.0000000000000000000000000000000000004888 148.0
LYD1_k127_680001_14 - - - - 0.00000000000000003612 91.0
LYD1_k127_680001_15 Protein of unknown function (DUF1566) - - - 0.00000004294 59.0
LYD1_k127_680001_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 507.0
LYD1_k127_680001_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 515.0
LYD1_k127_680001_4 protein-glutamate O-methyltransferase activity K00575,K03408,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 350.0
LYD1_k127_680001_5 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004306 284.0
LYD1_k127_680001_6 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000984 267.0
LYD1_k127_680001_7 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000001762 263.0
LYD1_k127_680001_8 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000006247 263.0
LYD1_k127_680001_9 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000002178 224.0
LYD1_k127_68021_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 467.0
LYD1_k127_68021_1 PFAM transglutaminase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007008 308.0
LYD1_k127_6811321_0 enterobactin catabolic process K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 510.0
LYD1_k127_6811321_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000004513 101.0
LYD1_k127_6811321_2 Major Facilitator Superfamily - - - 0.0000000000000000547 85.0
LYD1_k127_6811321_3 TPR repeat-containing protein - - - 0.00000004069 65.0
LYD1_k127_688402_0 Phosphonate ABC transporter, periplasmic K02044 - - 0.00000000000000000000000000000000000000000000000000003945 200.0
LYD1_k127_688402_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000608 61.0
LYD1_k127_699210_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 455.0
LYD1_k127_699210_1 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000006891 64.0
LYD1_k127_714192_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 516.0
LYD1_k127_714192_1 Lysine-2,3-aminomutase K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 438.0
LYD1_k127_714192_2 ATP-grasp domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 404.0
LYD1_k127_714192_3 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 334.0
LYD1_k127_714192_4 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 325.0
LYD1_k127_714192_5 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002426 283.0
LYD1_k127_714192_6 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000562 248.0
LYD1_k127_714192_7 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000147 147.0
LYD1_k127_714192_8 - - - - 0.0000000000000000003302 96.0
LYD1_k127_714192_9 Predicted membrane protein (DUF2085) - - - 0.00000000000003497 80.0
LYD1_k127_718808_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 589.0
LYD1_k127_718808_1 Evidence 4 Homologs of previously reported genes of - - - 0.00000000009656 67.0
LYD1_k127_721731_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000008737 161.0
LYD1_k127_721731_1 Belongs to the ompA family K03286 - - 0.00002068 48.0
LYD1_k127_725862_0 succinate dehydrogenase K00394 - 1.8.99.2 2.721e-214 687.0
LYD1_k127_725862_1 deoxyhypusine monooxygenase activity K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000006316 184.0
LYD1_k127_725862_2 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000000000000000000002826 157.0
LYD1_k127_725862_3 Rubrerythrin - - - 0.000000000000000000000005012 106.0
LYD1_k127_730269_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 601.0
LYD1_k127_730269_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002323 421.0
LYD1_k127_730269_2 PFAM Alcohol dehydrogenase GroES-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007108 408.0
LYD1_k127_730269_3 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 356.0
LYD1_k127_743281_0 histidine kinase A domain protein K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 388.0
LYD1_k127_743281_1 tRNA processing K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 288.0
LYD1_k127_743281_2 von Willebrand factor, type A - - - 0.000000000000000000000000000000000000000000000000000000000000003668 230.0
LYD1_k127_743281_3 PFAM von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000002717 188.0
LYD1_k127_743281_4 TIGRFAM lysine biosynthesis protein LysW K05826 - - 0.000000009497 59.0
LYD1_k127_743878_0 His Kinase A (phosphoacceptor) domain K02484,K07636,K07768 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005335 379.0
LYD1_k127_743878_1 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 312.0
LYD1_k127_743878_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000001003 245.0
LYD1_k127_743878_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657,K07662 - - 0.000000000000000000000000000000000000000000000000000005515 194.0
LYD1_k127_749489_0 L-fucose isomerase, C-terminal domain - - - 3.023e-218 685.0
LYD1_k127_749489_1 phosphonoacetaldehyde hydrolase activity - GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008801,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016853,GO:0016866,GO:0016868,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872 - 0.00000002097 57.0
LYD1_k127_75607_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00394 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 369.0
LYD1_k127_75607_1 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000003617 116.0
LYD1_k127_762457_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 7.579e-211 663.0
LYD1_k127_762457_1 TIGRFAM Hopanoid biosynthesis associated radical SAM protein HpnH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005598 524.0
LYD1_k127_762457_2 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 308.0
LYD1_k127_762457_3 OsmC-like protein K09136 - - 0.000000000000000000000000000000000000000001047 162.0
LYD1_k127_762457_4 dna ligase K01971 - 6.5.1.1 0.0000000000000000744 85.0
LYD1_k127_762457_5 Putative regulatory protein - - - 0.00000001164 57.0
LYD1_k127_762457_6 Anti-sigma F factor antagonist K06378 - - 0.00000004076 57.0
LYD1_k127_762457_7 Tetratricopeptide repeat - - - 0.0003376 52.0
LYD1_k127_77745_0 Haloacid dehalogenase-like hydrolase K01560,K07025,K08723 - 3.1.3.5,3.8.1.2 0.0000000000000000000000000000000000000000000000000000000001947 213.0
LYD1_k127_77745_1 Putative adhesin - - - 0.000000000000000000000000000000000000000000000000008775 192.0
LYD1_k127_77745_2 B3 4 domain protein - - - 0.0000000000000000000000000000000000000175 153.0
LYD1_k127_77745_3 - - - - 0.00000003618 58.0
LYD1_k127_785514_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 295.0
LYD1_k127_785514_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002923 278.0
LYD1_k127_785514_2 Protein involved in cellulose biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000002269 243.0
LYD1_k127_787012_0 Cytochrome c554 and c-prime - - - 4.661e-258 819.0
LYD1_k127_787012_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000103 178.0
LYD1_k127_787012_2 Sulfatase - - - 0.000000000000000000000000003248 123.0
LYD1_k127_787012_3 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738,K19515 - 1.2.7.5 0.000000000000000001717 89.0
LYD1_k127_788982_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 1.697e-226 711.0
LYD1_k127_788982_1 Quinolinate synthetase A protein K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000673 476.0
LYD1_k127_788982_2 Belongs to the NadC ModD family K00767,K03813 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 355.0
LYD1_k127_788982_3 signal peptide processing K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000001971 265.0
LYD1_k127_788982_4 PFAM membrane-flanked domain - - - 0.00000000000000000000000001776 119.0
LYD1_k127_788982_5 Transglycosylase SLT domain K08309 - - 0.0000000000000000000008936 104.0
LYD1_k127_79084_0 dUTP biosynthetic process K01494 GO:0003674,GO:0003824,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000001021 227.0
LYD1_k127_79084_1 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000003243 144.0
LYD1_k127_79084_2 Lipopolysaccharide-assembly - - - 0.000000000000000003958 96.0
LYD1_k127_79084_3 Binds directly to 16S ribosomal RNA K02968 - - 0.000001185 54.0
LYD1_k127_791447_0 palmitoyl-(protein) hydrolase activity K06999 - - 0.00000000000000000000000000000000000000000000000000000001468 214.0
LYD1_k127_791447_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000004545 142.0
LYD1_k127_791447_2 Heavy-metal resistance - - - 0.000000000001389 75.0
LYD1_k127_797699_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 307.0
LYD1_k127_797699_1 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000133 226.0
LYD1_k127_797699_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000125 192.0
LYD1_k127_797699_3 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000003545 134.0
LYD1_k127_797699_4 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000000005297 115.0
LYD1_k127_797699_5 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000004751 54.0
LYD1_k127_801299_0 Cysteine-rich domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 341.0
LYD1_k127_801299_1 FAD linked oxidases, C-terminal domain K00104,K18930 - 1.1.3.15 0.00000000000000000000000000000000000000000007217 164.0
LYD1_k127_801299_2 Domain of unknown function (DUF2088) - - - 0.00007463 45.0
LYD1_k127_807370_0 FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 3.138e-195 617.0
LYD1_k127_807370_1 Belongs to the type II topoisomerase GyrA ParC subunit family K02621 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004659 427.0
LYD1_k127_807370_2 Putative restriction endonuclease - - - 0.00000000000000000000000000000000007283 140.0
LYD1_k127_807370_3 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.0000000000000000000000000143 111.0
LYD1_k127_8353_0 threonine synthase activity K01733 GO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007732 498.0
LYD1_k127_8353_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004979 481.0
LYD1_k127_8353_2 PFAM transposase IS116 IS110 IS902 family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 292.0
LYD1_k127_8353_3 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003372 287.0
LYD1_k127_8353_4 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002295 285.0
LYD1_k127_8353_5 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000003986 141.0
LYD1_k127_8353_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000001096 54.0
LYD1_k127_84220_0 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.0 1335.0
LYD1_k127_84220_1 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007019 555.0
LYD1_k127_84220_2 Multicopper oxidase - - - 0.000001831 55.0
LYD1_k127_842548_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1125.0
LYD1_k127_842548_1 COG0464 ATPases of the AAA class - - - 6.554e-200 637.0
LYD1_k127_842548_10 DNA-templated transcription, initiation K03088 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0010468,GO:0010565,GO:0016020,GO:0019216,GO:0019217,GO:0019222,GO:0030312,GO:0031323,GO:0044464,GO:0050789,GO:0050794,GO:0060255,GO:0062012,GO:0065007,GO:0071944,GO:0080090 - 0.00000000000000000006551 97.0
LYD1_k127_842548_11 Anti-sigma K factor RskA - - - 0.0000000000004587 79.0
LYD1_k127_842548_12 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00006493 48.0
LYD1_k127_842548_2 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008049 484.0
LYD1_k127_842548_3 acetolactate synthase K01652 GO:0000287,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0019842,GO:0030976,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901681 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 316.0
LYD1_k127_842548_4 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002026 288.0
LYD1_k127_842548_5 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.000000000000000000000000000000000000000000000000000007984 203.0
LYD1_k127_842548_6 ACT domain K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000004046 164.0
LYD1_k127_842548_7 AAA domain - - - 0.000000000000000000000000000000000001369 161.0
LYD1_k127_842548_8 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000007457 129.0
LYD1_k127_842548_9 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000128 109.0
LYD1_k127_84442_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 6.325e-251 792.0
LYD1_k127_84442_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 527.0
LYD1_k127_84583_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 4.633e-237 746.0
LYD1_k127_84583_1 ketone body catabolic process K01026 - 2.8.3.1 6.749e-195 625.0
LYD1_k127_84583_10 Dehydrogenase K00248,K11410,K18244 GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004085,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016491,GO:0016627,GO:0017076,GO:0019395,GO:0019605,GO:0019626,GO:0019752,GO:0022607,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033539,GO:0033993,GO:0034440,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046359,GO:0046395,GO:0046459,GO:0048037,GO:0048545,GO:0050660,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0052890,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681 1.3.8.1,1.3.99.12 0.0000000000000000000000000009241 128.0
LYD1_k127_84583_11 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000001088 104.0
LYD1_k127_84583_12 - - - - 0.000000000002089 75.0
LYD1_k127_84583_13 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00003515 55.0
LYD1_k127_84583_2 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00015,K18916 - 1.1.1.26,1.20.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 424.0
LYD1_k127_84583_3 PFAM Major facilitator superfamily K08191 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 345.0
LYD1_k127_84583_4 aldo keto reductase K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006877 299.0
LYD1_k127_84583_5 cell redox homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000003588 248.0
LYD1_k127_84583_6 Protein of unknown function (DUF421) - - - 0.000000000000000000000000000000000000000000000000000003089 196.0
LYD1_k127_84583_7 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000008752 181.0
LYD1_k127_84583_8 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.0000000000000000000000000000000000000000008787 160.0
LYD1_k127_84583_9 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000001375 143.0
LYD1_k127_853688_0 exonuclease activity K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 346.0
LYD1_k127_853688_1 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 0.00000000000000000000000000007355 123.0
LYD1_k127_868675_0 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 389.0
LYD1_k127_868675_1 PFAM Chromate transporter K07240 - - 0.00000001332 57.0
LYD1_k127_870105_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 423.0
LYD1_k127_870105_1 AAA domain (Cdc48 subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 410.0
LYD1_k127_870105_2 Histidine kinase HAMP K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 377.0
LYD1_k127_870105_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000000000000000000000000002063 135.0
LYD1_k127_870105_4 Uncharacterised ArCR, COG2043 - - - 0.0009014 46.0
LYD1_k127_873636_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 331.0
LYD1_k127_873636_1 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006996 300.0
LYD1_k127_873636_2 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000004718 210.0
LYD1_k127_880208_0 tRNA threonylcarbamoyladenosine modification K06925,K07102 - 2.7.1.221 1.228e-292 906.0
LYD1_k127_880208_1 PFAM Aldehyde ferredoxin oxidoreductase K03738 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016614,GO:0030151,GO:0033719,GO:0043167,GO:0043169,GO:0043546,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071944,GO:0097159,GO:1901363 1.2.7.5 0.000000000008742 67.0
LYD1_k127_891082_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000003109 185.0
LYD1_k127_891082_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000005016 161.0
LYD1_k127_891082_2 Histidine kinase - - - 0.0000000000000000000000000000007339 134.0
LYD1_k127_894417_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1099.0
LYD1_k127_894417_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000002602 217.0
LYD1_k127_894417_3 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000002661 206.0
LYD1_k127_894417_4 - - - - 0.000000000000000000000000000000000000000001506 163.0
LYD1_k127_894417_5 SnoaL-like domain - - - 0.0000000000000000000000000000000000000003183 158.0
LYD1_k127_894417_6 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000000000002065 141.0
LYD1_k127_914842_0 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001839 267.0
LYD1_k127_914842_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000003001 206.0
LYD1_k127_914842_2 Thioredoxin K03672 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000007993 195.0
LYD1_k127_92098_0 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 475.0
LYD1_k127_92098_1 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001541 276.0
LYD1_k127_92098_2 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000157 241.0
LYD1_k127_92098_3 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000002183 55.0
LYD1_k127_924026_0 Peptide transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007439 565.0
LYD1_k127_924026_1 Leukotriene A4 hydrolase, C-terminal K01254 GO:0003674,GO:0003824,GO:0004177,GO:0004301,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0016801,GO:0016803,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006564 529.0
LYD1_k127_924026_2 Aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 480.0
LYD1_k127_924026_3 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 342.0
LYD1_k127_924026_4 Fumarate reductase succinate dehydrogenase flavoprotein K18209 - 1.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 318.0
LYD1_k127_924026_5 - - - - 0.000000000000000000000000000000000000000000000000000000003639 213.0
LYD1_k127_924026_6 2Fe-2S iron-sulfur cluster binding domain K00240,K00245 - 1.3.5.1,1.3.5.4 0.00000000000000009813 85.0
LYD1_k127_924026_7 Belongs to the ompA family K03286 - - 0.0000261 56.0
LYD1_k127_956579_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 312.0
LYD1_k127_956579_1 Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000008668 239.0
LYD1_k127_956579_2 Coenzyme A transferase K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000001249 169.0
LYD1_k127_968320_0 Uncharacterized protein family (UPF0051) K09014 - - 3.336e-261 816.0
LYD1_k127_968320_1 TIGRFAM SUF system FeS cluster assembly, Rtf2-type regulator - - - 0.000000000000000000000000000000000001461 143.0
LYD1_k127_968320_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000008473 103.0
LYD1_k127_968320_3 ATPase activity K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000007607 81.0
LYD1_k127_968320_4 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000001575 83.0
LYD1_k127_968320_5 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000008812 69.0
LYD1_k127_968320_6 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00001723 55.0
LYD1_k127_997105_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003578 329.0
LYD1_k127_997105_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004167 319.0
LYD1_k127_997105_2 PFAM type II secretion system protein E - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005323 250.0
LYD1_k127_997105_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
LYD1_k127_997105_4 - - - - 0.000003978 51.0
LYD1_k127_997105_5 DnaJ homolog subfamily B member K09517 GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005886,GO:0008150,GO:0009605,GO:0009607,GO:0012505,GO:0016020,GO:0031347,GO:0031349,GO:0031974,GO:0032991,GO:0034663,GO:0035821,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044003,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052033,GO:0052166,GO:0052167,GO:0052169,GO:0052173,GO:0052200,GO:0052255,GO:0052257,GO:0052305,GO:0052306,GO:0052308,GO:0052509,GO:0052510,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0070013,GO:0071944,GO:0075136,GO:0080134 - 0.00002778 55.0
LYD1_k127_997105_6 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.00006147 54.0