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Overview

ID MAG02031
Name LYD1_bin.14
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Terriglobia
Order Versatilivoradales
Family Versatilivoraceae
Genus
Species
Assembly information
Completeness (%) 68.52
Contamination (%) 1.85
GC content (%) 53.0
N50 (bp) 3,840
Genome size (bp) 2,874,325

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2660

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1006281_0 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000001574 188.0
LYD1_k127_1006281_1 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.00000001996 57.0
LYD1_k127_100884_0 efflux transmembrane transporter activity - - - 0.00000000000000002467 84.0
LYD1_k127_100884_1 Belongs to the ompA family K03286 - - 0.00002135 54.0
LYD1_k127_1014561_0 Peptidase dimerisation domain K01451 - 3.5.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 499.0
LYD1_k127_1014561_1 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 401.0
LYD1_k127_1014561_2 Saccharomyces cerevisiae YNL010W - GO:0000123,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0036409,GO:0036410,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0070775,GO:1902493,GO:1902494,GO:1990234 - 0.0000000000000000000000000000000001846 141.0
LYD1_k127_1014561_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000175 100.0
LYD1_k127_1016263_0 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000005398 211.0
LYD1_k127_1016263_1 Transposase - - - 0.000000001176 61.0
LYD1_k127_1017608_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006976 409.0
LYD1_k127_1017608_1 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 407.0
LYD1_k127_1017608_2 PFAM Type II secretion system F domain K02653 - - 0.0000000000003868 70.0
LYD1_k127_1023604_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 285.0
LYD1_k127_1023723_0 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 539.0
LYD1_k127_1023723_1 depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 338.0
LYD1_k127_1028960_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000004519 224.0
LYD1_k127_1028960_1 glycosyl transferase, family 39 - - - 0.0000000000000004526 91.0
LYD1_k127_1037001_0 Belongs to the MlaE permease family K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004284 256.0
LYD1_k127_1037001_1 pfam abc K02065 - - 0.00000000000000000000000000000000000000000000000000000001439 203.0
LYD1_k127_1037001_2 - - - - 0.0000000000000000000000000000000000000000000000004904 177.0
LYD1_k127_1039677_0 Mediates influx of magnesium ions K03284,K16074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 411.0
LYD1_k127_1039677_1 Cupin - - - 0.0000000000000000000000000000000000000000000000000000553 190.0
LYD1_k127_1039677_2 Outer membrane efflux protein K12340,K15725 - - 0.00000000000000000000000000000000000000000000000004994 188.0
LYD1_k127_1039677_3 Glycosyl hydrolases family 2, TIM barrel domain K01195 - 3.2.1.31 0.00000000000000000000000000000003344 134.0
LYD1_k127_1040191_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000818 338.0
LYD1_k127_1040191_1 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000000000002878 192.0
LYD1_k127_1050972_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 1.398e-291 914.0
LYD1_k127_1050972_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 401.0
LYD1_k127_1050972_2 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 323.0
LYD1_k127_1050972_3 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000005248 114.0
LYD1_k127_1063812_0 tagaturonate epimerase K21619 - 5.1.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008871 614.0
LYD1_k127_1063812_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001548 290.0
LYD1_k127_1063812_2 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001656 261.0
LYD1_k127_1063812_3 Tetratricopeptide repeat - - - 0.0000000000000003735 86.0
LYD1_k127_1063812_4 Carboxypeptidase regulatory-like domain - - - 0.000007225 49.0
LYD1_k127_1074971_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 307.0
LYD1_k127_1074971_1 Pfam:N_methyl_2 - - - 0.0000000000000000000000001152 111.0
LYD1_k127_1074971_2 Pfam:N_methyl_2 - - - 0.00000000000000000001759 98.0
LYD1_k127_1074971_3 TPR repeat - - - 0.000009184 55.0
LYD1_k127_107728_0 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000001428 136.0
LYD1_k127_108091_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 463.0
LYD1_k127_108091_1 formate dehydrogenase (NAD+) activity K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 449.0
LYD1_k127_108091_2 quinone binding K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 367.0
LYD1_k127_108091_3 TIGRFAM RNA polymerase sigma factor, FliA WhiG family K02405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005452 252.0
LYD1_k127_108091_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000017 223.0
LYD1_k127_108091_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000679 177.0
LYD1_k127_108091_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K02573 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000000738 168.0
LYD1_k127_108091_7 Thioesterase superfamily K10806 - - 0.00000000000000000000000000001483 121.0
LYD1_k127_1104801_0 polygalacturonase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 529.0
LYD1_k127_1104801_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 498.0
LYD1_k127_1104801_2 Yip1 domain - - - 0.000000000000003028 81.0
LYD1_k127_1104904_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005029 493.0
LYD1_k127_1104904_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 287.0
LYD1_k127_1104904_2 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000002363 224.0
LYD1_k127_1104904_3 Hydrolase, NUDIX family K01515 - 3.6.1.13 0.000000000000000000000000000000000000001334 154.0
LYD1_k127_1104904_4 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000001388 153.0
LYD1_k127_1104904_5 - - - - 0.00000000000000000000000000000000002163 141.0
LYD1_k127_1104904_6 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000277 102.0
LYD1_k127_1110753_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000663 527.0
LYD1_k127_1110753_1 Radical SAM domain protein - - - 0.000000000000000000000000000000002568 130.0
LYD1_k127_1112749_0 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 318.0
LYD1_k127_1112749_1 ATP-dependent helicase activity K10844 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000003872 263.0
LYD1_k127_1112749_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000004776 229.0
LYD1_k127_1112749_3 Thioredoxin-like - - - 0.00000000000000000000000000000002453 132.0
LYD1_k127_1112749_4 regulation of translation K05808,K05809 GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006417,GO:0006446,GO:0006448,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0045947,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000000000000003285 78.0
LYD1_k127_1119213_0 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 348.0
LYD1_k127_1119213_1 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 324.0
LYD1_k127_1119213_2 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 323.0
LYD1_k127_1119213_3 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000002036 180.0
LYD1_k127_1119213_4 methyltransferase - - - 0.0000000000000000000000000000000005318 143.0
LYD1_k127_1119213_5 Methyltransferase domain - - - 0.00000000000000000000000000523 121.0
LYD1_k127_1119213_6 Trehalose utilisation - - - 0.00000000000000000009918 89.0
LYD1_k127_1119213_7 Protein of unknown function (DUF3108) - - - 0.0000000003762 70.0
LYD1_k127_1126545_0 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 408.0
LYD1_k127_1126545_1 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 325.0
LYD1_k127_1126545_2 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000006012 199.0
LYD1_k127_1126545_3 Aminotransferase class-III K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000002006 173.0
LYD1_k127_1155250_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.662e-317 991.0
LYD1_k127_1155250_1 Histidine kinase - - - 0.00000000000000000000000000000006983 134.0
LYD1_k127_1155250_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000003997 108.0
LYD1_k127_1155250_3 - - - - 0.0000000000000000000003444 97.0
LYD1_k127_1155936_0 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 569.0
LYD1_k127_1155936_1 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000642 467.0
LYD1_k127_1155936_2 PAS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 375.0
LYD1_k127_1155936_3 TIGRFAM molybdenum cofactor synthesis K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001782 274.0
LYD1_k127_1155936_4 radical SAM domain protein - - - 0.00000000001487 64.0
LYD1_k127_1155936_5 - - - - 0.0000006915 57.0
LYD1_k127_1155936_6 radical SAM domain protein - - - 0.00009787 45.0
LYD1_k127_1167167_0 synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005693 375.0
LYD1_k127_1167167_1 Hemerythrin HHE cation binding - - - 0.00000000000000000000000000000003111 134.0
LYD1_k127_1167167_2 AsmA-like C-terminal region K07289 - - 0.00000000000000426 90.0
LYD1_k127_1173189_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 407.0
LYD1_k127_1173189_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 373.0
LYD1_k127_1173189_2 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 327.0
LYD1_k127_1173189_3 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000007149 264.0
LYD1_k127_1173189_4 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000002825 194.0
LYD1_k127_1173189_5 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000292 153.0
LYD1_k127_1173189_6 Glucose-6-phosphate dehydrogenase subunit - - - 0.0000000000000000007768 91.0
LYD1_k127_1179107_0 TIGRFAM amino acid adenylation domain - - - 1.384e-227 724.0
LYD1_k127_1180921_0 PFAM Class II aldolase K03077 - 5.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003807 328.0
LYD1_k127_1180921_1 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001265 258.0
LYD1_k127_1180921_2 Glycosyl-hydrolase 97 N-terminal K01187 - 3.2.1.20 0.000000000000000000000000001283 121.0
LYD1_k127_118477_0 - - - - 3.018e-210 675.0
LYD1_k127_118477_1 Membrane protein TerC - - - 0.00000000000000000000000000000000000000000000000000001481 198.0
LYD1_k127_1188349_0 Peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 606.0
LYD1_k127_1202273_0 polysaccharide catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 371.0
LYD1_k127_1202273_1 - - - - 0.00000000000000000000000000000000000598 149.0
LYD1_k127_1202291_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 417.0
LYD1_k127_1202291_1 Protein of unknown function DUF89 K09116 - - 0.000000000000000000000000000000000000000000000000000000005733 209.0
LYD1_k127_1202291_2 Redoxin - - - 0.00000000000000004394 92.0
LYD1_k127_1202291_3 O-methyltransferase K00588 - 2.1.1.104 0.0000004346 54.0
LYD1_k127_1202291_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00007875 48.0
LYD1_k127_1217741_0 COG2303 Choline dehydrogenase and related flavoproteins K03333 - 1.1.3.6 0.000000000000000000000000000000000000000000000000001514 194.0
LYD1_k127_121806_0 cheY-homologous receiver domain - - - 0.00000000000000001892 83.0
LYD1_k127_121806_1 ig-like, plexins, transcription factors - - - 0.000002335 61.0
LYD1_k127_1234646_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 327.0
LYD1_k127_1234646_1 zinc finger - - - 0.0000000000000000000000000000000000000009318 155.0
LYD1_k127_1234646_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000006713 56.0
LYD1_k127_1247761_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 397.0
LYD1_k127_1247761_1 Xylose isomerase-like TIM barrel K21909 - 5.1.3.38 0.000000000000000000000000000000000000000000000000000000000000001253 231.0
LYD1_k127_1247761_2 Tetratricopeptide repeat - - - 0.000000188 64.0
LYD1_k127_125460_0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00042 - 1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 371.0
LYD1_k127_125460_1 myo-inosose-2 dehydratase activity - - - 0.00000000003291 70.0
LYD1_k127_125460_2 - - - - 0.0000009226 53.0
LYD1_k127_1262182_0 Alpha-L-arabinofuranosidase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 614.0
LYD1_k127_1262182_1 Putative serine dehydratase domain - - - 0.000000000008185 66.0
LYD1_k127_1262182_2 transposition K07497 - - 0.00005936 47.0
LYD1_k127_1275073_0 Domain of unknown function (DUF4921) K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 507.0
LYD1_k127_1275073_1 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000002197 193.0
LYD1_k127_1275073_2 Belongs to the UPF0102 family K07460 - - 0.00000000000000000001828 94.0
LYD1_k127_1286862_0 TIGRFAM Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 519.0
LYD1_k127_1286862_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 368.0
LYD1_k127_1286862_2 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 321.0
LYD1_k127_1289186_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 390.0
LYD1_k127_1289186_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001264 282.0
LYD1_k127_1289186_2 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000002049 215.0
LYD1_k127_1289186_3 Belongs to the CDS family K00981 GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0030312,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 0.000000000000000000000000000000000000000000000000002285 193.0
LYD1_k127_1289186_4 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000001143 144.0
LYD1_k127_1292212_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000001498 224.0
LYD1_k127_1292212_1 PFAM ABC transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000005611 220.0
LYD1_k127_1292212_2 PFAM periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000002212 175.0
LYD1_k127_1292212_3 PHP domain K04486 GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15 0.000000000000000000000000000000007405 132.0
LYD1_k127_1292212_4 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000001166 132.0
LYD1_k127_1293249_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000002891 270.0
LYD1_k127_1293249_1 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000006911 108.0
LYD1_k127_1293249_2 Protein of unknown function (DUF2914) - - - 0.00000000000000000000009974 104.0
LYD1_k127_1294254_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005727 541.0
LYD1_k127_1294254_1 PFAM helicase domain protein - - - 0.000000000000001391 81.0
LYD1_k127_1295527_0 converts alpha-aldose to the beta-anomer - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009862 430.0
LYD1_k127_1296743_0 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000007583 195.0
LYD1_k127_1296743_1 - - - - 0.000000000000000000000000003311 119.0
LYD1_k127_1324313_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 447.0
LYD1_k127_1324313_1 Ferredoxin K04755 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0022900,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0071840 - 0.00000000000000308 79.0
LYD1_k127_1326348_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006204 324.0
LYD1_k127_1326348_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005849 255.0
LYD1_k127_1326348_2 Ribosomal protein L11/L12 K02867 - - 0.000000000000000000000000000000000000000000000000000000000000009464 220.0
LYD1_k127_1326348_3 Ribosomal protein L33 K02913 - - 0.000000000000000006096 84.0
LYD1_k127_1326348_4 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000002131 61.0
LYD1_k127_132868_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1037.0
LYD1_k127_132868_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 374.0
LYD1_k127_132868_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000001006 115.0
LYD1_k127_132868_3 TIGRFAM succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 - - 0.0000000000000000721 82.0
LYD1_k127_133181_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 612.0
LYD1_k127_1341721_0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008597 452.0
LYD1_k127_1341721_1 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000009971 129.0
LYD1_k127_1341736_0 GHMP kinase K00966,K05305,K16881 - 2.7.1.52,2.7.7.13,5.4.2.8 0.0 1078.0
LYD1_k127_1341736_1 fatty acid beta-oxidation using acyl-CoA dehydrogenase K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000745 269.0
LYD1_k127_1341736_2 COG0457 FOG TPR repeat - - - 0.00003862 53.0
LYD1_k127_1343768_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004457 265.0
LYD1_k127_1343768_1 His Kinase A (phospho-acceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000009323 213.0
LYD1_k127_1343768_2 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000001435 181.0
LYD1_k127_135265_0 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005801 550.0
LYD1_k127_135265_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001921 280.0
LYD1_k127_1358431_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000004953 169.0
LYD1_k127_1358431_1 Fibronectin-binding protein - - - 0.000000000000000000000000000000003375 143.0
LYD1_k127_1362926_0 L-glutamate biosynthetic process K00265,K00284 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016020,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2044.0
LYD1_k127_1362926_1 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 7.473e-286 892.0
LYD1_k127_1362926_2 'glutamate synthase K00266 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.4.1.13,1.4.1.14 1.76e-216 683.0
LYD1_k127_1362926_3 Yip1 domain - - - 0.0000000000000000000000000000000000000000000003213 173.0
LYD1_k127_1362926_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000003503 159.0
LYD1_k127_1362926_5 Type III effector Hrp-dependent K22129 - 2.7.1.219,2.7.1.220 0.000000000000000000000000000000003367 136.0
LYD1_k127_1367263_0 queuosine metabolic process K04068,K10026 - 1.97.1.4,4.3.99.3 0.0000000000000000000000000000000000000000000000000000000001277 207.0
LYD1_k127_1367263_1 Histidine kinase K07769 - 2.7.13.3 0.00000000000000000000000000000007376 140.0
LYD1_k127_1370509_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 531.0
LYD1_k127_1370509_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 308.0
LYD1_k127_1370509_2 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000006084 161.0
LYD1_k127_1370509_3 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic - - - 0.000000000000211 76.0
LYD1_k127_1384751_0 Sigma-70 region 2 K03088 - - 0.0000000000000000000001019 105.0
LYD1_k127_1384751_1 SPTR Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000001643 89.0
LYD1_k127_1400320_0 TIGRFAM drug resistance transporter, EmrB QacA subfamily K03446 - - 4.285e-212 670.0
LYD1_k127_1400320_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 445.0
LYD1_k127_1400320_2 Biotin-lipoyl like K03543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007113 415.0
LYD1_k127_1400320_3 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.000000000000004266 77.0
LYD1_k127_1402538_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.312e-278 869.0
LYD1_k127_1402538_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 437.0
LYD1_k127_1402538_2 Required for morphogenesis under gluconeogenic growth conditions - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006668 334.0
LYD1_k127_1402538_3 BON domain - - - 0.000000000000000000000000000000000000000000000000004495 187.0
LYD1_k127_1402538_4 Roadblock/LC7 domain - - - 0.00000000000000000002849 91.0
LYD1_k127_1402538_5 PFAM TPR repeat-containing protein - - - 0.0001041 53.0
LYD1_k127_140353_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 623.0
LYD1_k127_140353_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 390.0
LYD1_k127_140353_2 Domain of unknown function (DUF4091) - - - 0.0000000000000000000000000000000000000000006872 164.0
LYD1_k127_1405928_0 Belongs to the carbamoyltransferase HypF family K04656 - - 4.118e-228 724.0
LYD1_k127_1405928_1 hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005249 420.0
LYD1_k127_1405928_2 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.000000000000000000000000002125 115.0
LYD1_k127_1409030_0 Glycosyl transferase, family 2 K21349 - 2.4.1.268 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 515.0
LYD1_k127_1409030_1 PFAM ATP-binding region, ATPase domain protein domain protein K07683 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 356.0
LYD1_k127_1409030_2 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001032 277.0
LYD1_k127_1409030_3 haloacid dehalogenase-like hydrolase K05947,K07026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050897 2.4.1.217,3.1.3.70 0.0000000000000000000000000000000000000000000000000000000000000002812 229.0
LYD1_k127_1409030_4 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.000000000000000000059 91.0
LYD1_k127_1409030_5 - - - - 0.00000000000003529 82.0
LYD1_k127_1409030_6 Putative Na+/H+ antiporter - - - 0.0006291 42.0
LYD1_k127_1417780_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008337 335.0
LYD1_k127_1417780_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 317.0
LYD1_k127_1417780_10 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000001817 108.0
LYD1_k127_1417780_11 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000004175 84.0
LYD1_k127_1417780_12 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000001313 57.0
LYD1_k127_1417780_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005806 273.0
LYD1_k127_1417780_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002236 245.0
LYD1_k127_1417780_4 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000000000006792 205.0
LYD1_k127_1417780_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000004977 186.0
LYD1_k127_1417780_6 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000001303 143.0
LYD1_k127_1417780_7 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000002425 142.0
LYD1_k127_1417780_8 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000001643 135.0
LYD1_k127_1417780_9 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000001678 114.0
LYD1_k127_1434421_0 Sugar transport protein K05340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009487 413.0
LYD1_k127_1434421_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852 GO:0003674,GO:0003824,GO:0004747,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019303,GO:0019321,GO:0019323,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046835,GO:0071704,GO:1901575 2.7.1.15,2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 293.0
LYD1_k127_1434421_2 lysyltransferase activity K07027 - - 0.000000000000000000000000000002097 134.0
LYD1_k127_1434421_3 Glucose-6-phosphate dehydrogenase subunit - - - 0.0000000000000000000001034 106.0
LYD1_k127_1434539_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 507.0
LYD1_k127_1434539_1 lipopolysaccharide transport K09774 - - 0.000000000002424 74.0
LYD1_k127_1436467_0 PFAM Cys Met metabolism K01739,K01760,K01761 - 2.5.1.48,4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006877 449.0
LYD1_k127_1436467_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000007838 165.0
LYD1_k127_1436467_2 Creatinase/Prolidase N-terminal domain K08688 - 3.5.3.3 0.000000000000000000000000000000001055 145.0
LYD1_k127_1450262_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000006302 263.0
LYD1_k127_1450262_1 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000004452 220.0
LYD1_k127_1450262_2 Protein of unknown function (DUF2914) - - - 0.0000000000000000000000000001304 128.0
LYD1_k127_1450262_3 PFAM NUDIX hydrolase K01515 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019144,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0047631,GO:0050896 3.6.1.13 0.000000000000000001093 89.0
LYD1_k127_1488163_0 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 564.0
LYD1_k127_1488163_1 protein kinase activity K13582,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000006579 239.0
LYD1_k127_1488163_2 PFAM DinB family - - - 0.00000000000000000000000000000000000000000000000000002014 193.0
LYD1_k127_149229_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008871 416.0
LYD1_k127_149229_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 339.0
LYD1_k127_149229_2 ABC-type antimicrobial peptide transport system, permease component K02004,K05685 - - 0.00000009989 53.0
LYD1_k127_149229_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000001892 52.0
LYD1_k127_1503418_0 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000001271 211.0
LYD1_k127_1503418_1 Small integral membrane protein - - - 0.0000000000000000000000000000000003087 135.0
LYD1_k127_1507835_0 - - - - 0.0000000000000000000000000000000000000000004733 174.0
LYD1_k127_1507835_1 Elongation factor P K02356 - - 0.00000000000000000005936 93.0
LYD1_k127_1509224_0 PFAM Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000002193 196.0
LYD1_k127_1509224_1 MacB-like periplasmic core domain - - - 0.0000000000000106 79.0
LYD1_k127_1509224_2 efflux transmembrane transporter activity - - - 0.0002416 44.0
LYD1_k127_1509589_0 L-fucose isomerase and related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 481.0
LYD1_k127_1509589_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 449.0
LYD1_k127_1509589_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007241 441.0
LYD1_k127_1509589_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000003263 229.0
LYD1_k127_1513847_0 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 291.0
LYD1_k127_1513847_1 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.0000000000000000000000000000000000000000000000000008211 197.0
LYD1_k127_1513847_2 response regulator receiver - - - 0.000000000000000000000000005278 112.0
LYD1_k127_1513847_3 response regulator - - - 0.00000001081 57.0
LYD1_k127_1523030_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 GO:0000103,GO:0003674,GO:0003824,GO:0004020,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006790,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009336,GO:0009605,GO:0009987,GO:0009991,GO:0010134,GO:0010438,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019419,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033554,GO:0034599,GO:0040007,GO:0042221,GO:0042594,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0061695,GO:0070887,GO:0071496,GO:0071944,GO:1902494,GO:1902503,GO:1990234 2.7.1.25,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 523.0
LYD1_k127_1523030_1 Sulfate adenylyltransferase K00957 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009539 418.0
LYD1_k127_1523030_2 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 286.0
LYD1_k127_1523030_3 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000005659 207.0
LYD1_k127_1523030_4 transcriptional regulator, Rrf2 family - - - 0.000000000000000000000000000001222 126.0
LYD1_k127_1526190_0 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000002148 266.0
LYD1_k127_1526190_1 dehydrogenases and related proteins - - - 0.0000000000000000000001017 98.0
LYD1_k127_1527824_0 - - - - 1.036e-241 764.0
LYD1_k127_1527824_1 Associated with various cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 386.0
LYD1_k127_1527824_2 Ion transport 2 domain protein K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003302 281.0
LYD1_k127_1527824_3 Methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002924 269.0
LYD1_k127_1527824_4 Belongs to the glycosyl hydrolase 2 family K01192 - 3.2.1.25 0.00000000000000000000000000000000000000000000006556 176.0
LYD1_k127_1527952_0 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000006161 221.0
LYD1_k127_1527952_1 PFAM Chemotaxis methyl-accepting receptor, signalling K03406 - - 0.00004309 55.0
LYD1_k127_1528400_0 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000000000000000976 127.0
LYD1_k127_1528400_1 short-chain dehydrogenase - - - 0.0000000000000000000003416 99.0
LYD1_k127_1528400_2 Glycosyl hydrolase family 67 C-terminus K01235 - 3.2.1.139 0.0000000000003764 83.0
LYD1_k127_1528400_3 PFAM Glycoside hydrolase, clan GH-D - - - 0.0000000001465 68.0
LYD1_k127_1530797_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004563 549.0
LYD1_k127_1530797_1 PFAM glucose-methanol-choline oxidoreductase K03333 - 1.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 358.0
LYD1_k127_1530797_2 Reverse transcriptase K00986 - 2.7.7.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000134 277.0
LYD1_k127_1530797_3 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 0.0000000000000000000000000000000000000000000000000003538 186.0
LYD1_k127_1530797_4 PFAM RNA-directed DNA polymerase (Reverse transcriptase) K00986 - 2.7.7.49 0.0000000000000000000000000002464 114.0
LYD1_k127_1533389_0 Cyclomaltodextrinase, N-terminal K21575 - 3.2.1.135 0.000000000000000000000000000000000000000000000000000000000000000000000009093 250.0
LYD1_k127_1533389_1 Tetratricopeptide repeat - - - 0.0000000002053 68.0
LYD1_k127_1535757_0 peroxidase activity K00435 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005833 277.0
LYD1_k127_1535757_1 Cupredoxin-like domain - - - 0.0000000000000000000007014 101.0
LYD1_k127_1536346_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.0 1038.0
LYD1_k127_1536346_1 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 388.0
LYD1_k127_1536346_2 transferase activity, transferring acyl groups - - - 0.00000000000000000000000000000000000000000000000000000001116 199.0
LYD1_k127_1536346_3 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000006056 192.0
LYD1_k127_1537842_0 iron-nicotianamine transmembrane transporter activity - GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 1.642e-297 925.0
LYD1_k127_1537842_1 TIGRFAM aminoacyl-histidine dipeptidase K01270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 422.0
LYD1_k127_1537842_2 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001744 241.0
LYD1_k127_1537842_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001772 231.0
LYD1_k127_1537842_4 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000000000000000008581 151.0
LYD1_k127_1542142_0 Elongator protein 3, MiaB family, Radical SAM K22318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 544.0
LYD1_k127_1542142_1 COG COG1073 Hydrolases of the alpha beta superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000006357 252.0
LYD1_k127_1545763_0 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000317 199.0
LYD1_k127_1545763_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000004891 187.0
LYD1_k127_1545763_2 phosphatidylinositol N-acetylglucosaminyltransferase activity K03857 - 2.4.1.198 0.000000000000000000000000000000000000000001145 163.0
LYD1_k127_1549121_0 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 300.0
LYD1_k127_1549121_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000002526 96.0
LYD1_k127_1549121_3 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000004813 81.0
LYD1_k127_1558866_0 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 449.0
LYD1_k127_1558866_1 Melibiase K07407 GO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0009056,GO:0015925,GO:0016137,GO:0016139,GO:0016787,GO:0016798,GO:0042802,GO:0042803,GO:0046983,GO:0071704,GO:1901135,GO:1901136,GO:1901575,GO:1901657,GO:1901658 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 432.0
LYD1_k127_1558866_2 SIS domain K00820 - 2.6.1.16 0.00000000000000000000000000000002696 135.0
LYD1_k127_1558866_3 Belongs to the serpin family K13963 GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0004857,GO:0004866,GO:0004867,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009892,GO:0009894,GO:0009987,GO:0010466,GO:0010605,GO:0010951,GO:0012505,GO:0016192,GO:0019222,GO:0030141,GO:0030162,GO:0030234,GO:0030414,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032268,GO:0032269,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0042176,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045861,GO:0046903,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0060205,GO:0060255,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097708,GO:0098772,GO:0099503 - 0.0000000000000000000001296 98.0
LYD1_k127_1563494_0 ferrochelatase activity K01772 GO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009314,GO:0009416,GO:0009628,GO:0009987,GO:0016020,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040007,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009412 281.0
LYD1_k127_1563494_1 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001137 271.0
LYD1_k127_1563494_2 electron transfer activity - - - 0.000000000000000000000000000000000000000001726 160.0
LYD1_k127_1563494_3 COGs COG3316 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000113 156.0
LYD1_k127_1563494_4 (Rhomboid) family - - - 0.0002758 45.0
LYD1_k127_156630_0 Transposase - - - 0.00000000000000000000000000000000000000008459 165.0
LYD1_k127_1568163_0 slime layer polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 422.0
LYD1_k127_1568163_1 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000005466 270.0
LYD1_k127_1568163_2 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.000000000000000000000000000000000000513 154.0
LYD1_k127_1568163_3 Male sterility protein K01897 - 6.2.1.3 0.00000003242 60.0
LYD1_k127_1573496_0 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 565.0
LYD1_k127_1576708_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 1.291e-320 995.0
LYD1_k127_1577637_0 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008619 379.0
LYD1_k127_1577637_1 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000005466 117.0
LYD1_k127_1577637_2 chlorophyll binding - - - 0.00005236 53.0
LYD1_k127_1582880_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 311.0
LYD1_k127_1582880_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002754 284.0
LYD1_k127_1582880_2 - - - - 0.0000000000000000001997 94.0
LYD1_k127_1586717_0 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000001894 231.0
LYD1_k127_1586717_1 transport - - - 0.000000000000000000000000000000000123 140.0
LYD1_k127_1594777_0 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 8.762e-237 748.0
LYD1_k127_1601844_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008885 295.0
LYD1_k127_1601844_1 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000001254 160.0
LYD1_k127_1601844_2 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000001097 166.0
LYD1_k127_1601844_3 Anti-sigma W factor - - - 0.00002833 54.0
LYD1_k127_1604870_0 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 398.0
LYD1_k127_1604870_1 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001609 283.0
LYD1_k127_1604870_2 Helix-turn-helix domain - - - 0.00000000000000000000002516 100.0
LYD1_k127_1604870_3 Pilus assembly protein, PilO K02664 - - 0.000000000000000000005295 101.0
LYD1_k127_1604870_5 Fimbrial assembly protein (PilN) K02663 - - 0.00001639 54.0
LYD1_k127_1604870_6 deoxyhypusine hydroxylase K06072,K08187 GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010506,GO:0010508,GO:0012505,GO:0016020,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0036211,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051604,GO:0055114,GO:0065007,GO:0071704,GO:0098827,GO:1901564 1.14.99.29 0.0009645 43.0
LYD1_k127_1608031_0 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004289 351.0
LYD1_k127_1608031_1 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000000000000000000000000000000000002137 217.0
LYD1_k127_1608031_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000467 135.0
LYD1_k127_1608031_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000002577 97.0
LYD1_k127_1608031_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000006259 88.0
LYD1_k127_1608031_5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000002908 73.0
LYD1_k127_1608708_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1267.0
LYD1_k127_1608708_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 550.0
LYD1_k127_1608708_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001199 275.0
LYD1_k127_1608708_3 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000006946 141.0
LYD1_k127_1608708_4 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00002798 48.0
LYD1_k127_1616941_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006354 376.0
LYD1_k127_1616941_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006272 251.0
LYD1_k127_1616941_2 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000000000000006866 220.0
LYD1_k127_1616941_3 Enoyl-(Acyl carrier protein) reductase - - - 0.000000001129 63.0
LYD1_k127_1629122_0 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001133 283.0
LYD1_k127_1629122_1 - - - - 0.0002508 50.0
LYD1_k127_1635299_0 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005611 253.0
LYD1_k127_1635299_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001706 246.0
LYD1_k127_1635299_2 serine-type peptidase activity K03641 - - 0.0000000000000000000008426 104.0
LYD1_k127_1635583_0 thiolester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 405.0
LYD1_k127_1635583_1 alcohol dehydrogenase K19955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 335.0
LYD1_k127_1638457_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002571 327.0
LYD1_k127_1638457_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002123 260.0
LYD1_k127_1638457_2 MacB-like periplasmic core domain - - - 0.000002395 51.0
LYD1_k127_163870_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 384.0
LYD1_k127_163870_1 Phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000001572 108.0
LYD1_k127_1654346_0 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 455.0
LYD1_k127_1671840_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671,K22345 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9,4.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 402.0
LYD1_k127_1671840_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 289.0
LYD1_k127_1671840_2 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000003817 245.0
LYD1_k127_1671840_3 nUDIX hydrolase K03574,K03575 - 3.6.1.55 0.00000000000000000000000000002989 121.0
LYD1_k127_1671840_4 PFAM Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.0000000000000000000000000009809 119.0
LYD1_k127_1672364_1 Aldo/keto reductase family K07079 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002283 243.0
LYD1_k127_1672384_0 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 475.0
LYD1_k127_1672384_1 Binding-protein-dependent transport system inner membrane component K02047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 426.0
LYD1_k127_1672384_2 PFAM binding-protein-dependent transport systems inner membrane component K02046,K15496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007744 413.0
LYD1_k127_1672384_3 - - - - 0.000000003029 62.0
LYD1_k127_1675110_0 mandelate racemase muconate lactonizing K08323 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005975,GO:0008150,GO:0008152,GO:0008927,GO:0009056,GO:0016052,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0044238,GO:0046872,GO:0047929,GO:0071704,GO:1901575 4.2.1.8 2.262e-201 634.0
LYD1_k127_1675110_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000001164 63.0
LYD1_k127_1676512_0 Uncharacterized protein conserved in bacteria (DUF2252) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 335.0
LYD1_k127_1676512_1 inositol 2-dehydrogenase activity K16043 - 1.1.1.370 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 327.0
LYD1_k127_1676512_2 acid phosphatase activity - - - 0.000000000000000000000000000000000003168 153.0
LYD1_k127_1676512_3 PFAM Bacterial regulatory proteins, gntR family K03710 - - 0.0002229 48.0
LYD1_k127_1683673_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 5.119e-267 836.0
LYD1_k127_1683673_1 Rhodanese-like domain K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 389.0
LYD1_k127_1683673_2 Protein of unknown function (DUF2892) - - - 0.00000000000000000000004074 100.0
LYD1_k127_168438_0 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 347.0
LYD1_k127_168438_1 Belongs to the MIP aquaporin (TC 1.A.8) family K02440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007771 328.0
LYD1_k127_1692733_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 472.0
LYD1_k127_1692733_1 tetratricopeptide repeat - - - 0.00000004323 62.0
LYD1_k127_1694071_0 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 399.0
LYD1_k127_1694071_1 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 294.0
LYD1_k127_1694071_2 PFAM Mannosyl oligosaccharide glucosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000169 257.0
LYD1_k127_1694071_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000001935 68.0
LYD1_k127_1698149_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 515.0
LYD1_k127_1698149_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 472.0
LYD1_k127_1698149_2 PFAM 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 331.0
LYD1_k127_1698149_3 TIGRFAM TonB family protein K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000008401 246.0
LYD1_k127_1698149_4 PFAM von Willebrand factor type A - - - 0.000000000000000000000000000000000000000000000000000000000000009177 227.0
LYD1_k127_1698149_5 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.000000000000000000000000000000000000000000007216 164.0
LYD1_k127_1698149_6 TPR Domain containing protein K12600 - - 0.0000000000002391 82.0
LYD1_k127_1698149_7 ABC-type Na efflux pump, permease component K09696 - - 0.0000000000007521 78.0
LYD1_k127_1698293_0 Wzt C-terminal domain K09691 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 473.0
LYD1_k127_1698293_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 343.0
LYD1_k127_1698293_2 TonB-dependent receptor plug K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 337.0
LYD1_k127_1698293_3 macromolecule localization K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000006041 234.0
LYD1_k127_1698293_4 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000001973 203.0
LYD1_k127_1698293_5 - - - - 0.0000000000000000000000002291 121.0
LYD1_k127_1698293_6 - - - - 0.000000000000000000000008177 108.0
LYD1_k127_1698770_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 514.0
LYD1_k127_1698770_1 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 459.0
LYD1_k127_1698770_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000000009647 220.0
LYD1_k127_1698770_3 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000006536 194.0
LYD1_k127_1706456_0 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term K17108 - 3.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000203 256.0
LYD1_k127_1706456_1 Methyltransferase small domain - - - 0.0000000000000000000000000000000000000000000004978 175.0
LYD1_k127_1721449_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001805 273.0
LYD1_k127_1721449_1 Bacterial regulatory protein, Fis family - - - 0.000000000000000000001215 98.0
LYD1_k127_1721449_2 Response receiver sensor diguanylate cyclase, PAS domain-containing - - - 0.00001419 54.0
LYD1_k127_172589_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003537 295.0
LYD1_k127_172589_1 Lumazine binding domain K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000005088 214.0
LYD1_k127_172589_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000001447 107.0
LYD1_k127_1728709_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000000000000000736 192.0
LYD1_k127_1728709_1 - - - - 0.000000000000000000002008 102.0
LYD1_k127_1728709_2 Putative adhesin - - - 0.00000000004715 71.0
LYD1_k127_1728709_3 AntiSigma factor - - - 0.000003269 57.0
LYD1_k127_1734649_0 Short-chain dehydrogenase reductase SDR K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002709 283.0
LYD1_k127_1734649_1 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002111 286.0
LYD1_k127_1734649_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000002441 146.0
LYD1_k127_1734649_3 PFAM PEGA domain - - - 0.0001077 53.0
LYD1_k127_17477_0 C-terminus of AA_permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 571.0
LYD1_k127_17477_1 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 473.0
LYD1_k127_17477_2 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001765 284.0
LYD1_k127_17477_3 SIS domain K06041 - 5.3.1.13 0.00000000000000000000000000000003082 126.0
LYD1_k127_1754039_0 PFAM Glycosyl transferase family 2 - - - 8.497e-204 644.0
LYD1_k127_1754039_1 peptidase M24B X-Pro dipeptidase aminopeptidase domain protein K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000001336 279.0
LYD1_k127_1754039_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000001496 142.0
LYD1_k127_1761123_0 Belongs to the xylose isomerase family K01805 GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 1.674e-204 645.0
LYD1_k127_1761123_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 542.0
LYD1_k127_1772797_0 Signal Transduction Histidine Kinase - - - 0.00000000000000000000000000002486 129.0
LYD1_k127_1772797_2 Elongation factor G, domain IV K02355 - - 0.0001393 44.0
LYD1_k127_1783857_0 Tim44 K02117,K08678,K11646,K15539,K17835,K21636 - 1.1.98.6,1.4.1.24,3.6.3.14,3.6.3.15,4.1.1.35,4.1.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 551.0
LYD1_k127_1784350_0 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008263 394.0
LYD1_k127_1784350_1 Aldo/keto reductase family K07079 - - 0.000000000000000000000000000000000000000000000000000000000000003447 222.0
LYD1_k127_1784350_2 Ribosomal RNA adenine dimethylase - - - 0.0000007778 53.0
LYD1_k127_1785971_0 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 429.0
LYD1_k127_1785971_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000004682 252.0
LYD1_k127_1785971_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000004513 166.0
LYD1_k127_1785971_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000004156 85.0
LYD1_k127_1787608_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 2.304e-205 651.0
LYD1_k127_1787608_1 L-lactate permease K03303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 312.0
LYD1_k127_1787608_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000000000000000002873 231.0
LYD1_k127_1787608_3 Reverse transcriptase-like - - - 0.00000000000000000000000000000000000000002318 158.0
LYD1_k127_1787608_4 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000000000001026 139.0
LYD1_k127_1792725_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 360.0
LYD1_k127_1792725_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002901 261.0
LYD1_k127_179413_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 398.0
LYD1_k127_179413_1 beta-galactosidase activity K01190 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 408.0
LYD1_k127_179413_2 Beta-galactosidase trimerisation domain - - - 0.000000000000005213 85.0
LYD1_k127_179413_3 Domain of unknown function (DUF4982) K01190 - 3.2.1.23 0.000000000007794 71.0
LYD1_k127_179413_4 Bacterial Ig-like domain - - - 0.00000000004024 64.0
LYD1_k127_1800847_0 Glycosyl hydrolases family 2, TIM barrel domain K01190,K01195 GO:0003674,GO:0003824,GO:0004553,GO:0004565,GO:0005575,GO:0005975,GO:0005984,GO:0005988,GO:0005990,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009341,GO:0009987,GO:0015925,GO:0016052,GO:0016787,GO:0016798,GO:0032991,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0046352,GO:0071704,GO:1901575,GO:1902494 3.2.1.23,3.2.1.31 0.0 1056.0
LYD1_k127_1800847_1 Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man- Glc) to mannose 1-phosphate (Man1P) and glucose K16212 - 2.4.1.281 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009545 360.0
LYD1_k127_1809221_0 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000389 182.0
LYD1_k127_1809221_1 Glycosyl Hydrolase Family 88 - - - 0.00000000000007363 79.0
LYD1_k127_1809221_2 PFAM ABC transporter K01990 - - 0.0000006864 51.0
LYD1_k127_1820563_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 349.0
LYD1_k127_1820563_1 dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 339.0
LYD1_k127_1820563_2 glutamine-fructose-6-phosphate transaminase (isomerizing) activity K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 321.0
LYD1_k127_1820563_3 beta-galactosidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000007939 240.0
LYD1_k127_1820563_4 Belongs to the carbohydrate kinase PfkB family K00882,K00917,K16370 - 2.7.1.11,2.7.1.144,2.7.1.56 0.000000000000000000000000001538 124.0
LYD1_k127_1820563_5 Uroporphyrinogen decarboxylase K01599 - 4.1.1.37 0.000000000000006313 78.0
LYD1_k127_1822015_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 413.0
LYD1_k127_1822332_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2206.0
LYD1_k127_1822332_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046,K13797 GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 3.814e-301 934.0
LYD1_k127_1822332_2 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000000000000000000719 180.0
LYD1_k127_1822332_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000000003119 158.0
LYD1_k127_1828595_0 Protein of unknown function (DUF1553) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 293.0
LYD1_k127_1828595_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005365 279.0
LYD1_k127_183344_0 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001087 265.0
LYD1_k127_1861056_0 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 358.0
LYD1_k127_1861056_1 electron transfer activity K00428 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 301.0
LYD1_k127_1861056_2 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000005126 191.0
LYD1_k127_1861056_3 - K07018 - - 0.0000000000000000000000000000000000000000001131 166.0
LYD1_k127_1861056_4 Protein of unknown function (DUF423) - - - 0.000000000000000000000000000000000001004 143.0
LYD1_k127_1865501_0 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 321.0
LYD1_k127_1865501_1 - - - - 0.00000000000008732 82.0
LYD1_k127_1869739_0 protein conserved in bacteria K09955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006167 604.0
LYD1_k127_1888025_0 TIGRFAM Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000001454 264.0
LYD1_k127_1888025_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000001201 235.0
LYD1_k127_1888025_2 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000338 224.0
LYD1_k127_1888025_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.000000000003314 66.0
LYD1_k127_1896716_0 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 302.0
LYD1_k127_1896716_1 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000251 173.0
LYD1_k127_1896716_2 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000004136 185.0
LYD1_k127_1896716_3 ATPase-coupled phosphate ion transmembrane transporter activity K02036 GO:0003674,GO:0003824,GO:0005215,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015114,GO:0015318,GO:0015399,GO:0015405,GO:0015415,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0034220,GO:0035435,GO:0042623,GO:0042626,GO:0043225,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0098660,GO:0098661,GO:0099133 3.6.3.27 0.00000000000000000000000004776 109.0
LYD1_k127_1909433_0 Domain of unknown function (DUF4091) - - - 5.612e-230 725.0
LYD1_k127_1909433_1 Domain of unknown function (DUF5107) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 588.0
LYD1_k127_1909433_2 galactitol metabolic process K02775,K16371,K21622 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034219,GO:0044425,GO:0044459,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944 5.1.3.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 408.0
LYD1_k127_1909433_3 COGs COG4299 conserved - - - 0.000000000000000000000000000009948 120.0
LYD1_k127_1910162_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 4.508e-292 912.0
LYD1_k127_1910419_0 TIGRFAM geranylgeranyl reductase - - - 0.0000000000000000000000000001942 124.0
LYD1_k127_1920532_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000172 111.0
LYD1_k127_1920532_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000001017 98.0
LYD1_k127_1920532_2 Transposase - - - 0.0000000000000002508 82.0
LYD1_k127_1920532_3 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000001289 79.0
LYD1_k127_1920532_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000004006 61.0
LYD1_k127_1942635_0 acetylesterase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 310.0
LYD1_k127_1942635_1 HpcH/HpaI aldolase/citrate lyase family - - - 0.000000000000000000000000000000132 128.0
LYD1_k127_1944863_0 NUDIX domain K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 298.0
LYD1_k127_1944863_1 COG1073 Hydrolases of the alpha beta superfamily - - - 0.000000000000000000000000000001453 131.0
LYD1_k127_1960919_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 347.0
LYD1_k127_1960919_1 Transketolase, pyrimidine binding domain K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001625 269.0
LYD1_k127_1960919_2 ATP-dependent helicase K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000001262 177.0
LYD1_k127_1966564_0 Penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 369.0
LYD1_k127_1966564_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 353.0
LYD1_k127_1966564_2 PFAM polysaccharide biosynthesis protein K03328 - - 0.0000000000000000000000000000000000000000002189 176.0
LYD1_k127_1966564_3 Belongs to the Nudix hydrolase family K01515,K03574 - 3.6.1.13,3.6.1.55 0.0000000000000000000000000000000000008296 146.0
LYD1_k127_1966564_4 Glycosyl transferases group 1 - - - 0.000000008199 65.0
LYD1_k127_1971313_0 Hypothetical methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 419.0
LYD1_k127_1971313_1 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000002199 213.0
LYD1_k127_1971313_2 regulatory protein, arsR K03892,K21903 - - 0.00000000000000000000001042 104.0
LYD1_k127_1971313_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000001906 91.0
LYD1_k127_1977362_0 Protein of unknown function (DUF512) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 302.0
LYD1_k127_1977362_1 CDP-alcohol phosphatidyltransferase K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000002079 133.0
LYD1_k127_1978231_0 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 419.0
LYD1_k127_1978231_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000006655 119.0
LYD1_k127_1978231_2 - - - - 0.000228 52.0
LYD1_k127_2022758_0 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 324.0
LYD1_k127_2022758_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K07106 - 4.2.1.126 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 298.0
LYD1_k127_2022758_2 glutamine-fructose-6-phosphate transaminase (isomerizing) activity K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000012 199.0
LYD1_k127_2033979_0 oxidoreductase activity - - - 0.00000000000000000008258 104.0
LYD1_k127_2033979_1 Beta-galactosidase K12308 - 3.2.1.23 0.0000000000006165 81.0
LYD1_k127_2033979_2 Peptidase, M16 - - - 0.0000000002215 70.0
LYD1_k127_2056546_0 Domain of unknown function (DUF3488) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 318.0
LYD1_k127_2056546_1 Bacterial regulatory proteins, crp family K10914 GO:0000166,GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006109,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0016020,GO:0017076,GO:0019219,GO:0019222,GO:0030312,GO:0030551,GO:0030552,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043565,GO:0044212,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0062012,GO:0065007,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000874,GO:2001141 - 0.0000000000000000000000000000000000001141 150.0
LYD1_k127_2063925_0 Fumarylacetoacetate (FAA) hydrolase family K14259 - 4.2.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000005517 265.0
LYD1_k127_2063925_1 Beta-eliminating lyase K01667 - 4.1.99.1 0.0000000000000000000000000000000003372 134.0
LYD1_k127_2063925_3 oxidoreductase activity - - - 0.0001 54.0
LYD1_k127_2070855_0 Belongs to the IlvD Edd family K22396 - 4.2.1.82 9.112e-295 918.0
LYD1_k127_2070855_1 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 440.0
LYD1_k127_2070855_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0001130,GO:0001131,GO:0001141,GO:0001217,GO:0002161,GO:0002196,GO:0003674,GO:0003700,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0052689,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.1.1.7 0.00000000000000000000000000000000000000000000000009948 184.0
LYD1_k127_2070855_3 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000001235 153.0
LYD1_k127_208897_0 Domain of unknown function (DUF5009) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 386.0
LYD1_k127_208897_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008424 326.0
LYD1_k127_208897_2 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000005179 100.0
LYD1_k127_2092723_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 496.0
LYD1_k127_2092723_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826,K02619 - 2.6.1.42,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000000000001048 246.0
LYD1_k127_2092723_2 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.00000000000000000000000000000000000000000000000005468 187.0
LYD1_k127_2092723_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000001398 140.0
LYD1_k127_2092723_4 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000007566 117.0
LYD1_k127_209379_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008197 473.0
LYD1_k127_209379_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 410.0
LYD1_k127_209379_2 zinc-ribbon domain - - - 0.0002104 48.0
LYD1_k127_2130900_0 PFAM PfkB domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 405.0
LYD1_k127_2130900_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000006478 249.0
LYD1_k127_2130900_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000001172 166.0
LYD1_k127_2130900_3 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000001217 169.0
LYD1_k127_2130900_4 Putative diguanylate phosphodiesterase - - - 0.0000001926 63.0
LYD1_k127_214142_0 Fumarate hydratase (Fumerase) K01676 - 4.2.1.2 9.424e-235 735.0
LYD1_k127_2151722_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 9.661e-291 904.0
LYD1_k127_2151722_1 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000002574 220.0
LYD1_k127_2151722_2 PFAM Trehalose utilisation - - - 0.0000000000003939 72.0
LYD1_k127_2159456_0 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 0.0 1050.0
LYD1_k127_2159456_1 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 0.0000000000000002968 83.0
LYD1_k127_216037_0 Sigma-54 interaction domain K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 416.0
LYD1_k127_216037_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000001051 165.0
LYD1_k127_2162788_0 Heat shock 70 kDa protein K04043 - - 4.033e-235 743.0
LYD1_k127_2162788_1 DnaJ central domain K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 462.0
LYD1_k127_2162788_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000002091 216.0
LYD1_k127_2162788_3 Methylates ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000004342 171.0
LYD1_k127_2162788_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.00000000000000000000000000000000000000000006934 169.0
LYD1_k127_2162788_5 - - - - 0.000000000000000005591 95.0
LYD1_k127_2162788_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000009145 76.0
LYD1_k127_2166305_0 A G-specific adenine glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000000002751 199.0
LYD1_k127_2166305_1 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000007375 193.0
LYD1_k127_2177688_0 Glyoxalase-like domain K07104 - 1.13.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001576 261.0
LYD1_k127_2177688_1 Lysin motif K08307 - - 0.0000000000000000000000000000323 127.0
LYD1_k127_2177688_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000003764 99.0
LYD1_k127_2179311_0 pyrroloquinoline quinone binding K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000262 242.0
LYD1_k127_2179311_1 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000004753 233.0
LYD1_k127_2191162_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 397.0
LYD1_k127_2191162_1 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000551 125.0
LYD1_k127_2191162_2 - - - - 0.000000000000000000000000001071 121.0
LYD1_k127_2191162_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000004478 102.0
LYD1_k127_2191162_4 methyltransferase - - - 0.0000000000000004348 87.0
LYD1_k127_2224602_0 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008738 412.0
LYD1_k127_2224602_1 Putative adhesin - - - 0.0000000000000000000000000000000000000000000003376 179.0
LYD1_k127_2224602_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000003468 128.0
LYD1_k127_2224602_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000009598 109.0
LYD1_k127_2224602_4 Oligopeptide transporter OPT - - - 0.0000000000000000000006636 96.0
LYD1_k127_2225818_0 ATPase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 420.0
LYD1_k127_2225818_1 Tetratricopeptide repeat - - - 0.00005305 49.0
LYD1_k127_2229461_0 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 466.0
LYD1_k127_2229461_1 IMS family HHH motif K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 376.0
LYD1_k127_2229461_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000007427 240.0
LYD1_k127_2229461_3 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000172 237.0
LYD1_k127_2287448_0 Peptidase M16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 601.0
LYD1_k127_2287448_1 Inosine-uridine preferring nucleoside hydrolase K01250 - - 0.00000000000000000006758 93.0
LYD1_k127_2294036_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007953 340.0
LYD1_k127_2294036_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009466 298.0
LYD1_k127_2294036_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000001657 204.0
LYD1_k127_2294036_3 outer membrane autotransporter barrel domain protein - - - 0.000000000000000000000000000000000000000005052 163.0
LYD1_k127_2294036_4 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000002393 102.0
LYD1_k127_2294036_5 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000002644 76.0
LYD1_k127_230139_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 496.0
LYD1_k127_230139_1 Uncharacterised protein family UPF0066 - - - 0.0000001764 57.0
LYD1_k127_230139_2 Protein kinase domain K12132 - 2.7.11.1 0.0000003975 53.0
LYD1_k127_2301810_0 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009034 277.0
LYD1_k127_2301810_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000005684 92.0
LYD1_k127_2309899_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 456.0
LYD1_k127_2311245_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 513.0
LYD1_k127_2311245_1 Recombinase - - - 0.0000000000000000000000000003263 119.0
LYD1_k127_2318457_0 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000003436 262.0
LYD1_k127_2318457_1 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000000000000745 168.0
LYD1_k127_2318457_2 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.0000000000000000000000002103 112.0
LYD1_k127_2318457_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00001378 50.0
LYD1_k127_2333681_0 PFAM aminotransferase, class I K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 526.0
LYD1_k127_2333681_1 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 482.0
LYD1_k127_2333681_2 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001164 293.0
LYD1_k127_2333681_3 general secretion pathway protein - - - 0.00000000000000000000000003172 119.0
LYD1_k127_2333681_4 nuclear chromosome segregation - - - 0.00000000000000002687 93.0
LYD1_k127_2333681_5 - - - - 0.00000000001872 67.0
LYD1_k127_233972_0 Myo-inositol-1-phosphate synthase, GAPDH domain protein K01858 - 5.5.1.4 3.18e-203 639.0
LYD1_k127_233972_1 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000003217 198.0
LYD1_k127_2343578_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003941 602.0
LYD1_k127_2343578_1 heme binding K08259 - 3.4.24.75 0.00000000000000000000000000000000000000000000000000004352 198.0
LYD1_k127_234722_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 389.0
LYD1_k127_234722_1 Belongs to the folylpolyglutamate synthase family K11754 GO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006761,GO:0006807,GO:0008150,GO:0008152,GO:0008841,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046452,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 331.0
LYD1_k127_234722_2 PFAM Major Facilitator Superfamily K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000001837 245.0
LYD1_k127_234722_3 gamma-glutamyl-gamma-aminobutyrate hydrolase activity K07010 - - 0.00000000000000000000000000000000000000000000000000000008772 203.0
LYD1_k127_234722_4 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000004708 129.0
LYD1_k127_2355827_0 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 404.0
LYD1_k127_2356021_0 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000004824 229.0
LYD1_k127_2356021_1 C-terminal domain of alpha-glycerophosphate oxidase - - - 0.0000000000000000001491 89.0
LYD1_k127_2356021_2 Helix-hairpin-helix motif - - - 0.000000000002118 71.0
LYD1_k127_2362368_0 - - - - 0.00000000003447 77.0
LYD1_k127_2362368_1 Sigma-70 region 2 K03088 - - 0.00000000003769 72.0
LYD1_k127_2366657_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 479.0
LYD1_k127_2366657_1 Belongs to the glycosyl hydrolase 18 family K01183 - 3.2.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 438.0
LYD1_k127_2366657_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003856 258.0
LYD1_k127_2366657_3 Abhydrolase family - - - 0.000000000000000000000000000000000000000000000000007471 204.0
LYD1_k127_2372295_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002813 282.0
LYD1_k127_2372295_1 - - - - 0.0000000000000008676 81.0
LYD1_k127_2372295_2 Xylose isomerase-like TIM barrel - - - 0.0000004761 55.0
LYD1_k127_2376873_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000007348 210.0
LYD1_k127_2376873_1 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000001062 186.0
LYD1_k127_2376873_2 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000005292 134.0
LYD1_k127_238748_0 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 595.0
LYD1_k127_238748_1 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 368.0
LYD1_k127_238748_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 346.0
LYD1_k127_2396444_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 318.0
LYD1_k127_2396444_1 Redoxin K02199 - - 0.000449 46.0
LYD1_k127_2427992_0 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002119 270.0
LYD1_k127_2427992_1 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000002451 188.0
LYD1_k127_2427992_2 lysyltransferase activity K07027 - - 0.000000548 58.0
LYD1_k127_2452879_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.859e-225 707.0
LYD1_k127_2452879_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000007978 183.0
LYD1_k127_2458155_0 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006738 277.0
LYD1_k127_2458155_1 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000003141 246.0
LYD1_k127_2458155_2 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000007119 228.0
LYD1_k127_2458155_3 Shikimate dehydrogenase substrate binding domain K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000002089 102.0
LYD1_k127_2460816_0 Melibiase K07407 - 3.2.1.22 7.933e-251 786.0
LYD1_k127_2461073_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 1.62e-312 978.0
LYD1_k127_2461073_1 PFAM Prenyltransferase squalene oxidase K06045 - 4.2.1.129,5.4.99.17 7.469e-217 692.0
LYD1_k127_2461073_2 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 429.0
LYD1_k127_2461073_3 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 376.0
LYD1_k127_2461073_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001409 260.0
LYD1_k127_2461073_5 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000003867 203.0
LYD1_k127_2461073_6 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000004542 139.0
LYD1_k127_2461073_7 Putative RNA methylase family UPF0020 K15460 - 2.1.1.223 0.00000000000000000000000000000000008132 143.0
LYD1_k127_2461073_8 Domain of unknown function (DUF309) K09763 - - 0.000000000006101 72.0
LYD1_k127_2461376_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 507.0
LYD1_k127_2461376_1 purine nucleotide biosynthetic process K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009827 266.0
LYD1_k127_2461376_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000002033 209.0
LYD1_k127_2463299_0 Integrase - - - 0.00000000000000000000000000000000003541 137.0
LYD1_k127_2468485_0 PFAM LmbE family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 314.0
LYD1_k127_2468485_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000005179 177.0
LYD1_k127_2468485_2 Virulence factor BrkB K07058 - - 0.00000000000000000000000118 115.0
LYD1_k127_2487219_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007687 411.0
LYD1_k127_2487219_1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K03431,K15778 - 5.4.2.10,5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 409.0
LYD1_k127_2487219_2 dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000009561 230.0
LYD1_k127_2487219_3 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000006363 153.0
LYD1_k127_2487219_4 Galactokinase 2 K18674 GO:0003674,GO:0003824,GO:0004335,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006012,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019318,GO:0031982,GO:0043226,GO:0043227,GO:0043230,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044421,GO:0044424,GO:0044464,GO:0046835,GO:0070062,GO:0071704,GO:1903561 2.7.1.157 0.00000000000000001202 93.0
LYD1_k127_2487219_5 Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) K00849 - 2.7.1.6 0.000000002388 70.0
LYD1_k127_2488547_0 N-acetylglucosaminylinositol deacetylase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003801 287.0
LYD1_k127_2488547_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000009704 193.0
LYD1_k127_2493333_0 Xylose isomerase-like TIM barrel K03079 - 5.1.3.22 0.0000000000000000000000000000000000000000000000000000001379 198.0
LYD1_k127_2494365_0 Cytochrome D1 heme domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 453.0
LYD1_k127_2494365_1 O-linked GlcNAc transferase - - - 0.00000000000000000000000000000000000000000000000000006816 202.0
LYD1_k127_2494365_2 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000005155 169.0
LYD1_k127_2494900_0 macromolecule localization K01421,K01992,K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 420.0
LYD1_k127_2494900_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 348.0
LYD1_k127_2515729_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 540.0
LYD1_k127_2515729_1 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000002596 176.0
LYD1_k127_2526892_0 MacB-like periplasmic core domain - - - 9.274e-205 664.0
LYD1_k127_2526892_1 FtsX-like permease family - - - 0.000000000000000000001282 97.0
LYD1_k127_2530910_0 general secretion pathway protein K02246,K02456,K02458 - - 0.00000000000000000000000000000000000000000000001058 177.0
LYD1_k127_2530910_1 Type II secretion system protein K K02460 - - 0.0000000000000006872 86.0
LYD1_k127_2530910_2 pilus assembly protein PilW K02459 - - 0.000000000007001 75.0
LYD1_k127_2530910_3 Prokaryotic N-terminal methylation motif K02458 - - 0.0000164 55.0
LYD1_k127_2530910_4 General secretion pathway protein H K02457 - - 0.00002409 54.0
LYD1_k127_2534300_0 PFAM peptidase S58, DmpA K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003215 374.0
LYD1_k127_2534300_1 PFAM Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002198 291.0
LYD1_k127_2534300_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000005878 170.0
LYD1_k127_2534300_3 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.0000000000000000000000000000000000000008462 153.0
LYD1_k127_2534300_4 Pyruvate phosphate dikinase, PEP pyruvate binding domain - - - 0.00000000000007006 85.0
LYD1_k127_2556034_0 Glycosyl Hydrolase Family 88 - - - 3.938e-208 655.0
LYD1_k127_2556034_1 N-terminus of Esterase_SGNH_hydro-type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 409.0
LYD1_k127_2556034_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 308.0
LYD1_k127_2556034_3 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000337 258.0
LYD1_k127_2558507_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005279 423.0
LYD1_k127_2558507_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005992 259.0
LYD1_k127_2560444_0 Cupin domain - - - 0.00000000000000000000000000000000000000000000000002662 182.0
LYD1_k127_2560444_1 - - - - 0.000000000000000000000000000000000009459 147.0
LYD1_k127_2560444_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000002465 126.0
LYD1_k127_2569539_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 506.0
LYD1_k127_2569539_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 427.0
LYD1_k127_2569539_2 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 308.0
LYD1_k127_2569539_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000006588 160.0
LYD1_k127_257578_0 Ferrous iron transport protein B K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 623.0
LYD1_k127_257578_1 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 484.0
LYD1_k127_257578_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000971 225.0
LYD1_k127_257578_3 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000004825 183.0
LYD1_k127_257578_4 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.0000000000000000000000000000000000000000011 163.0
LYD1_k127_257578_5 Fe2 transport system protein A K04758 - - 0.0002688 47.0
LYD1_k127_2587715_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 394.0
LYD1_k127_2587715_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007735 269.0
LYD1_k127_2587715_2 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000006251 190.0
LYD1_k127_2587715_3 Bacterial PH domain - - - 0.00000000000000000000000000000000000001099 149.0
LYD1_k127_2588800_0 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007706 545.0
LYD1_k127_2588800_1 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 523.0
LYD1_k127_2588800_2 Sporulation initiation inhibitor protein Soj K03496 - - 0.000000000000000000000000000000000000000000000000000000009402 206.0
LYD1_k127_2591845_0 TonB dependent receptor - - - 2.21e-273 862.0
LYD1_k127_2608378_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009979 392.0
LYD1_k127_2608378_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000002946 184.0
LYD1_k127_2608378_2 GAF domain - - - 0.0000000000000000000000000000000000001178 158.0
LYD1_k127_2608378_3 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000009988 127.0
LYD1_k127_2608378_4 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000006591 127.0
LYD1_k127_2608378_5 GGDEF domain K07315 - 3.1.3.3 0.0000000000000000009142 90.0
LYD1_k127_2608378_6 Tetratricopeptide repeat - - - 0.00000000000002651 86.0
LYD1_k127_2608378_7 Bacterial regulatory protein, Fis family - - - 0.000001824 53.0
LYD1_k127_2610856_0 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000008089 228.0
LYD1_k127_2610856_1 bacterial (prokaryotic) histone like domain K03530 - - 0.000000000000000000000000008395 112.0
LYD1_k127_2610856_2 Glycosyl hydrolases family 2, TIM barrel domain - - - 0.00000000000000000000003104 102.0
LYD1_k127_2610856_3 nitrite reductase [NAD(P)H] activity K00158,K00363,K03809,K05710 - 1.2.3.3,1.6.5.2,1.7.1.15 0.00012 49.0
LYD1_k127_2644662_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 496.0
LYD1_k127_2644662_1 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 344.0
LYD1_k127_2644662_2 PFAM Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000000000000006884 164.0
LYD1_k127_2644662_3 PFAM Glycoside hydrolase family 42 domain protein K12308 - 3.2.1.23 0.000000000000000000000000000000000001657 147.0
LYD1_k127_2644662_4 Domain of unknown function (DUF2088) - - - 0.00000000000000000007466 91.0
LYD1_k127_2644662_5 - - - - 0.000000812 53.0
LYD1_k127_268653_0 SPFH domain Band 7 family protein 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 479.0
LYD1_k127_268653_1 Domain of unknown function (DUF4178) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 354.0
LYD1_k127_268653_2 Domain of unknown function (DUF4178) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006199 245.0
LYD1_k127_268653_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000008443 184.0
LYD1_k127_268653_4 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000001046 153.0
LYD1_k127_268653_5 S-adenosylmethionine decarboxylase K01611 - 4.1.1.50 0.000000000000000000000000000001577 125.0
LYD1_k127_268653_6 - - - - 0.000000000001478 69.0
LYD1_k127_268653_7 Domain of Unknown Function (DUF350) - - - 0.00000000009453 63.0
LYD1_k127_2687600_0 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002005 280.0
LYD1_k127_2687600_1 ABC-type multidrug transport system ATPase K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000002326 244.0
LYD1_k127_2702731_0 spore germination - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 287.0
LYD1_k127_2702731_1 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000000003785 149.0
LYD1_k127_2702731_2 of the drug metabolite transporter (DMT) superfamily - GO:0003333,GO:0003674,GO:0005215,GO:0005302,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015179,GO:0015192,GO:0015196,GO:0015238,GO:0015318,GO:0015711,GO:0015801,GO:0015807,GO:0015823,GO:0015827,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0022857,GO:0034220,GO:0042221,GO:0042493,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.00005384 48.0
LYD1_k127_2705379_0 SpoIVB peptidase S55 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009306 408.0
LYD1_k127_2705379_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 337.0
LYD1_k127_2705379_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000001402 120.0
LYD1_k127_2705379_3 thiolester hydrolase activity K06889 - - 0.000000000000000000000001276 113.0
LYD1_k127_2709256_0 Mitochondrial degradasome RNA helicase subunit C terminal K17675 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 373.0
LYD1_k127_2726053_0 TIGRFAM serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 377.0
LYD1_k127_2726053_1 RNA pseudouridylate synthase K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000002093 228.0
LYD1_k127_2726053_2 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000001805 117.0
LYD1_k127_273198_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000000000000000000000000007123 206.0
LYD1_k127_273198_1 - - - - 0.000000000000000000000000007026 116.0
LYD1_k127_2736673_0 PFAM Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005517 319.0
LYD1_k127_2736673_1 PFAM glycoside hydrolase clan GH-D K07407 - 3.2.1.22 0.00000000000000000000000000000000000000000006884 180.0
LYD1_k127_2736673_2 alpha-L-rhamnosidase - - - 0.00000000000000002056 87.0
LYD1_k127_274728_0 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005874 276.0
LYD1_k127_274728_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000001669 55.0
LYD1_k127_274728_2 Outer membrane efflux protein - - - 0.000007923 49.0
LYD1_k127_2754418_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 587.0
LYD1_k127_2754418_1 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304 432.0
LYD1_k127_2754418_2 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000002477 227.0
LYD1_k127_2754418_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000001072 229.0
LYD1_k127_277827_0 COG2706 3-carboxymuconate cyclase K07404 - 3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 429.0
LYD1_k127_277827_1 WD40-like Beta Propeller K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 385.0
LYD1_k127_277827_2 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0000000000000000000000000000000000000004671 151.0
LYD1_k127_277827_3 TIGRFAM TonB family K03832 - - 0.000000000000008691 85.0
LYD1_k127_2780535_0 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 336.0
LYD1_k127_2780535_1 PFAM Thioredoxin domain K05838 - - 0.00000000000000000000000000000000000000001983 156.0
LYD1_k127_2780535_2 Alpha beta K06889 - - 0.000000655 53.0
LYD1_k127_2803467_0 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 396.0
LYD1_k127_2803467_1 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003608 278.0
LYD1_k127_2803467_2 Methyltransferase domain - - - 0.000000000000000000000003484 111.0
LYD1_k127_2807319_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 463.0
LYD1_k127_2807319_1 polyphosphate kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 322.0
LYD1_k127_2814187_0 PFAM peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 375.0
LYD1_k127_2814187_1 amine dehydrogenase activity K14647,K21449 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 338.0
LYD1_k127_2814187_2 Universal stress protein family - - - 0.00000000000000000000005145 100.0
LYD1_k127_2823545_0 Oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605 565.0
LYD1_k127_2823545_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004343 251.0
LYD1_k127_2833031_0 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007799 475.0
LYD1_k127_2833031_1 pfam fad - - - 0.000000000000000001086 88.0
LYD1_k127_2840968_0 class II (D K K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 604.0
LYD1_k127_2840968_1 Arginase family K01476 - 3.5.3.1 0.0000000000000000000000000000000000000000000000000000000004433 207.0
LYD1_k127_2840968_2 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000004481 190.0
LYD1_k127_2840968_3 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000567 169.0
LYD1_k127_2840968_4 - - - - 0.00000000000000001334 87.0
LYD1_k127_2840968_5 Hfq protein K03666 - - 0.00000000006121 68.0
LYD1_k127_2840968_6 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0002045 45.0
LYD1_k127_284387_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 297.0
LYD1_k127_2844903_0 1,4-alpha-glucan branching enzyme activity K00700,K01236 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18,3.2.1.141 0.0 1042.0
LYD1_k127_2844903_1 Domain of unknown function (DUF1957) K16149 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 497.0
LYD1_k127_2844903_2 Domain of unknown function (DUF4912) K09942 - - 0.000000000005627 75.0
LYD1_k127_2849708_0 Protein of unknown function, DUF255 K06888 - - 7.52e-225 717.0
LYD1_k127_2849708_1 Transcription factor zinc-finger - - - 0.000000007952 59.0
LYD1_k127_2850600_0 Pas domain K01768,K07315 - 3.1.3.3,4.6.1.1 0.000000000000000000000000000000000002939 152.0
LYD1_k127_2861571_0 Aldo/keto reductase family K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 389.0
LYD1_k127_2861571_1 Putative collagen-binding domain of a collagenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 297.0
LYD1_k127_2861571_2 PFAM Neutral alkaline nonlysosomal ceramidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003209 263.0
LYD1_k127_2861571_3 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000007002 193.0
LYD1_k127_2861571_4 Putative collagen-binding domain of a collagenase - - - 0.0000001862 54.0
LYD1_k127_288102_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 4.544e-278 869.0
LYD1_k127_288102_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 459.0
LYD1_k127_288102_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000004127 197.0
LYD1_k127_288102_3 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.0000000000000000000000000000000000001779 149.0
LYD1_k127_2882093_0 Domain of unknown function (DUF5107) - - - 5.248e-296 938.0
LYD1_k127_2882093_1 that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of K16371 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034219,GO:0044425,GO:0044459,GO:0044464,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944 - 0.0000000000000000004286 93.0
LYD1_k127_2882093_2 Domain of unknown function (DUF5107) - - - 0.00000000000003135 73.0
LYD1_k127_2900915_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002417 258.0
LYD1_k127_2900915_2 CsbD-like - - - 0.00000000000000000000000117 109.0
LYD1_k127_2917895_0 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007819 440.0
LYD1_k127_2917895_1 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 323.0
LYD1_k127_2917895_2 L-lactate permease K00427,K03303 - - 0.000000000000000000000000000000000000000000000000000000000000000002794 234.0
LYD1_k127_2921674_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 413.0
LYD1_k127_2921674_1 Epimerase dehydratase K01784,K17947 - 5.1.3.2,5.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009716 312.0
LYD1_k127_2921674_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 319.0
LYD1_k127_2921674_3 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000009414 187.0
LYD1_k127_2921674_4 EamA-like transporter family - - - 0.000000000000001677 82.0
LYD1_k127_2927408_0 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 477.0
LYD1_k127_2927408_1 Pyruvate:ferredoxin oxidoreductase core domain II K00186 - 1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 453.0
LYD1_k127_2927408_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175,K00177,K00187 - 1.2.7.11,1.2.7.3,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 313.0
LYD1_k127_2927408_3 4 iron, 4 sulfur cluster binding K00176,K05524 - 1.2.7.3 0.00000000000000000002618 94.0
LYD1_k127_2944111_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 388.0
LYD1_k127_2944111_1 Belongs to the ABC transporter superfamily K02031,K02032,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009394 310.0
LYD1_k127_2944111_2 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000002383 220.0
LYD1_k127_2944111_3 - - - - 0.00000000000000000000005354 102.0
LYD1_k127_29527_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000009243 204.0
LYD1_k127_29527_1 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.0000000000003052 73.0
LYD1_k127_2962866_0 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000003074 202.0
LYD1_k127_2962866_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000008348 118.0
LYD1_k127_2968476_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.547e-213 670.0
LYD1_k127_2968476_1 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 408.0
LYD1_k127_2968476_2 PFAM Amino acid-binding ACT - - - 0.00000000000000000000000000000000000000000003278 164.0
LYD1_k127_2968476_3 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.00000000000000000000000000000000000001726 145.0
LYD1_k127_2968476_4 Amino acid adenylation domain - - - 0.0000000000001138 72.0
LYD1_k127_297141_0 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000651 306.0
LYD1_k127_297141_1 Cytidine monophosphokinase K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000003281 260.0
LYD1_k127_297141_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.00000000000000000000000009126 108.0
LYD1_k127_2977931_0 protoporphyrinogen oxidase activity K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009486 482.0
LYD1_k127_2977931_1 glucosylceramidase activity K01201 GO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005513 314.0
LYD1_k127_2978154_0 membrane organization K07277,K09800 - - 0.0 1092.0
LYD1_k127_2982624_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 442.0
LYD1_k127_2982624_1 Ribosomal protein S1 K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 389.0
LYD1_k127_2982624_2 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001863 248.0
LYD1_k127_2982624_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004784,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009266,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0010269,GO:0010447,GO:0016020,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0020012,GO:0030145,GO:0030682,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042597,GO:0043167,GO:0043169,GO:0043207,GO:0044237,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052059,GO:0052173,GO:0052200,GO:0052385,GO:0052550,GO:0052564,GO:0052567,GO:0052572,GO:0055114,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071291,GO:0071450,GO:0071451,GO:0071944,GO:0072593,GO:0075136,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.0000000000000000000000000000000000000000000000000000002833 200.0
LYD1_k127_2982624_4 Alkyl hydroperoxide reductase K03564 - 1.11.1.15 0.0002416 44.0
LYD1_k127_299123_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 464.0
LYD1_k127_299123_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006017 411.0
LYD1_k127_299123_2 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009892 272.0
LYD1_k127_3023814_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 609.0
LYD1_k127_3023814_1 ABC transporter K05847 - - 0.00000000000000008932 83.0
LYD1_k127_3029096_0 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 304.0
LYD1_k127_3029096_2 inositol 2-dehydrogenase activity - - - 0.000000000000000009264 83.0
LYD1_k127_3031057_0 CoA enzyme activase uncharacterised domain (DUF2229) - - - 7.21e-321 994.0
LYD1_k127_3031766_0 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 406.0
LYD1_k127_3031766_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000001892 269.0
LYD1_k127_3031766_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000003262 200.0
LYD1_k127_3031766_3 high-affinity ferrous iron transmembrane transporter activity K07243 - - 0.00000000000000000000000000000000000000000000000002305 191.0
LYD1_k127_3031766_4 membrane protein domain - - - 0.000000000005811 68.0
LYD1_k127_3044843_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 371.0
LYD1_k127_3044843_1 membrane-bound metal-dependent hydrolase K07038 - - 0.0000000000000000000000000000000000000000000000000005343 196.0
LYD1_k127_3065127_0 HELICc2 K03722 - 3.6.4.12 7.781e-237 759.0
LYD1_k127_3065127_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 427.0
LYD1_k127_3065127_2 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000141 219.0
LYD1_k127_3065127_3 N-acetylglucosamine kinase activity K00884 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006040,GO:0006044,GO:0006082,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0045127,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901071,GO:1901135,GO:1901265,GO:1901363 2.7.1.59 0.000000000000000000000000000000000000000000000002121 190.0
LYD1_k127_3065127_4 Domain of unknown function (DUF4091) - - - 0.0000000001426 68.0
LYD1_k127_3069876_0 TIGRFAM Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 492.0
LYD1_k127_3069876_1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000001477 178.0
LYD1_k127_3088290_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 396.0
LYD1_k127_3088290_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 338.0
LYD1_k127_3088290_2 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005943 248.0
LYD1_k127_3088290_3 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000122 171.0
LYD1_k127_3088290_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000001607 119.0
LYD1_k127_3088290_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000001239 70.0
LYD1_k127_3096442_0 ATP-binding cassette protein, ChvD family - - - 5.231e-275 854.0
LYD1_k127_3096442_1 Beta-eliminating lyase K01668 - 4.1.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 377.0
LYD1_k127_3096442_2 Beta-eliminating lyase K01668 - 4.1.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009723 329.0
LYD1_k127_3098679_0 WYL domain - - - 0.00000000000000000000000000001729 130.0
LYD1_k127_3098679_1 cellulose binding - - - 0.0000000000000000000002766 104.0
LYD1_k127_3102753_0 PFAM Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000000000000000241 209.0
LYD1_k127_3102753_1 4Fe-4S dicluster domain K03389,K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000001412 130.0
LYD1_k127_3102753_2 - - - - 0.000000000000006727 75.0
LYD1_k127_3103163_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 540.0
LYD1_k127_3103163_1 PFAM NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000001229 157.0
LYD1_k127_3103163_2 PFAM Cold-shock protein, DNA-binding K03704 - - 0.00000000000000000000000001307 109.0
LYD1_k127_3119192_0 - - - - 0.000000000000000000000000000000000000000003273 175.0
LYD1_k127_3119192_1 Major Facilitator Superfamily K19577 - - 0.00000000000000000000000000000001034 142.0
LYD1_k127_3124250_0 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 319.0
LYD1_k127_3124250_1 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) - - - 0.00000000000000000000000000000000000000001134 158.0
LYD1_k127_3124250_2 Sigma-54 interaction domain - - - 0.000885 46.0
LYD1_k127_3136068_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 387.0
LYD1_k127_3136068_1 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 292.0
LYD1_k127_3136068_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000003653 212.0
LYD1_k127_3136068_3 Uncharacterized protein containing a ferredoxin domain (DUF2148) - - - 0.00000000000000000000000000000000000008161 148.0
LYD1_k127_3143703_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 9.063e-301 945.0
LYD1_k127_3143703_1 PFAM CBS domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 529.0
LYD1_k127_3143703_2 extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 477.0
LYD1_k127_3143703_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 377.0
LYD1_k127_3143703_4 HAD-hyrolase-like K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000006428 200.0
LYD1_k127_3143703_5 Glycoprotease family K01409,K14742 GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.00000000000000000000000000000000001578 144.0
LYD1_k127_3143703_6 N-terminal domain of toast_rack, DUF2154 - - - 0.00000000000000000000000000000000003095 141.0
LYD1_k127_3143703_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K07025 - - 0.0000000000000000000000000000000001004 141.0
LYD1_k127_3143703_8 Ribosomal-protein-alanine acetyltransferase K03789 GO:0003674,GO:0003824,GO:0004596,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031365,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.128 0.000000000000000009664 91.0
LYD1_k127_314404_0 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005721 334.0
LYD1_k127_314404_1 DegT/DnrJ/EryC1/StrS aminotransferase family K13010 - 2.6.1.102 0.00000000000000000000000000000000000000000000000000000004088 199.0
LYD1_k127_314404_2 Taurine catabolism dioxygenase TauD, TfdA - - - 0.00000000000000000000000000000000000000000000601 172.0
LYD1_k127_316362_0 ERCC4 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001289 240.0
LYD1_k127_316362_1 beta-galactosidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002151 238.0
LYD1_k127_316362_2 Catalyzes the synthesis of activated sulfate K00860 - 2.7.1.25 0.000000000000000000000000000000000000000000000000000000000000000002238 233.0
LYD1_k127_3166503_0 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007467 326.0
LYD1_k127_3166503_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000002803 123.0
LYD1_k127_3168599_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009106 463.0
LYD1_k127_3168599_1 Histidine Phosphotransfer domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 378.0
LYD1_k127_3173272_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 467.0
LYD1_k127_3173272_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 450.0
LYD1_k127_3173272_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 306.0
LYD1_k127_3173272_3 peptidylprolyl isomerase K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000004038 262.0
LYD1_k127_3173272_4 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000001197 136.0
LYD1_k127_3173272_5 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000006706 103.0
LYD1_k127_3173272_6 Protein of unknown function (DUF3108) - - - 0.0000009336 61.0
LYD1_k127_3182387_0 PFAM Phosphoribosyltransferase - - - 0.00000000000000000000000000000000000000000000000436 182.0
LYD1_k127_3182387_1 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00002507 46.0
LYD1_k127_3186824_0 Arylsulfatase a K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 498.0
LYD1_k127_3186824_1 COG3119 Arylsulfatase A K01134 - 3.1.6.8 0.000000000000000000000000000000000000000000000000006713 188.0
LYD1_k127_3186824_2 Iron-sulfur cluster-binding domain K06871 - - 0.00000001262 56.0
LYD1_k127_3194573_0 Enoyl-CoA hydratase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000004161 270.0
LYD1_k127_3194573_1 - - - - 0.000000000000000000000000000000000000002524 165.0
LYD1_k127_3194573_2 Protein conserved in bacteria - - - 0.00000000000124 75.0
LYD1_k127_3195320_0 D-mannonate dehydratase (UxuA) K01686 - 4.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 442.0
LYD1_k127_3195320_1 mttA/Hcf106 family K03116 - - 0.0000000000000009189 80.0
LYD1_k127_3195320_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03116 - - 0.000000000005658 66.0
LYD1_k127_3199095_0 threonine synthase activity K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 449.0
LYD1_k127_3199095_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004691 357.0
LYD1_k127_3199095_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000001535 233.0
LYD1_k127_3199095_3 endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000002871 167.0
LYD1_k127_3199095_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000006286 102.0
LYD1_k127_3199095_5 PFAM DNA photolyase, FAD-binding K01669 - 4.1.99.3 0.00000000000000000001469 96.0
LYD1_k127_3205269_0 Glycosyl hydrolase family 20, domain 2 - - - 2.335e-200 646.0
LYD1_k127_3205269_1 Peptidase family M20/M25/M40 K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000002662 182.0
LYD1_k127_3205269_2 BAAT / Acyl-CoA thioester hydrolase C terminal - - - 0.000000000000000000000000007271 124.0
LYD1_k127_3213979_0 ImpA, N-terminal, type VI secretion system K11910 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 536.0
LYD1_k127_3213979_1 ImcF-related N-terminal domain K11891 - - 0.0000000000000000000000000000000000000000000000000000000000000005069 223.0
LYD1_k127_3219798_0 Stage II sporulation protein E K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007273 404.0
LYD1_k127_3219798_1 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000007092 183.0
LYD1_k127_322077_0 O-antigen ligase like membrane protein - - - 0.000000000000000000000000000000000000000000000000000000001667 216.0
LYD1_k127_322077_1 Glycosyltransferase like family 2 K03606,K07011 - - 0.000000000000000000000000000000000000000000000000000000241 203.0
LYD1_k127_3222509_0 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000002119 216.0
LYD1_k127_3222509_1 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000001681 143.0
LYD1_k127_3222509_2 PFAM Rhomboid family K19225 - 3.4.21.105 0.000000000000000000000002501 111.0
LYD1_k127_3222509_3 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000003269 88.0
LYD1_k127_3231274_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 537.0
LYD1_k127_3231274_1 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 432.0
LYD1_k127_3231274_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 391.0
LYD1_k127_3231274_3 Asp/Glu/Hydantoin racemase K01779 - 5.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002211 280.0
LYD1_k127_3231274_4 Peptidase family M54 K06974 - - 0.0000000000000000000000000000000000000000002577 165.0
LYD1_k127_3231274_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K02482 - 2.7.13.3 0.0000000000000000000000000001041 119.0
LYD1_k127_3231274_6 4Fe-4S dicluster domain - - - 0.0000000000000001119 80.0
LYD1_k127_3231274_7 Cytochrome c7 and related cytochrome c - - - 0.000000002366 70.0
LYD1_k127_3234145_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000786 428.0
LYD1_k127_3234145_1 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007622 400.0
LYD1_k127_3234145_2 Sulfatase - - - 0.0000007176 53.0
LYD1_k127_3234145_3 Glycosyl hydrolase family 20, catalytic domain - - - 0.00003237 53.0
LYD1_k127_3235811_0 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 1.97e-206 676.0
LYD1_k127_3235811_1 Oligopeptidase F K08602 GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 8.298e-204 657.0
LYD1_k127_3235811_2 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 4.2.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 419.0
LYD1_k127_3235811_3 Peptidase dimerisation domain protein K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 316.0
LYD1_k127_3235811_4 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000001192 217.0
LYD1_k127_3235811_5 glutamine-fructose-6-phosphate transaminase (isomerizing) activity K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000002274 204.0
LYD1_k127_3235811_6 Stage II sporulation protein K06381 - - 0.000000000000000000000000001809 120.0
LYD1_k127_3244637_0 HMGL-like K01649,K01655 - 2.3.3.13,2.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 504.0
LYD1_k127_3244637_1 membrane - - - 0.000000000000000000000000000000000000000000000000000009659 200.0
LYD1_k127_3244637_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000006963 55.0
LYD1_k127_3260238_0 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.00000000000000000000000000004441 119.0
LYD1_k127_3260238_1 belongs to the carbohydrate kinase PfkB family K00882,K16370 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006000,GO:0006001,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008443,GO:0008662,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019318,GO:0019320,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046835,GO:0071704,GO:1901575 2.7.1.11,2.7.1.56 0.0000000000000000000003171 108.0
LYD1_k127_3265308_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 3.207e-235 748.0
LYD1_k127_3265308_1 amino acid K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 471.0
LYD1_k127_3265308_2 pfam nipsnap - - - 0.00000000000000000000000000000000000000000000000000000002905 206.0
LYD1_k127_3265308_3 - - - - 0.0000000000000000000375 93.0
LYD1_k127_3265308_4 energy transducer activity K03832,K07126 - - 0.000000384 63.0
LYD1_k127_3267676_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000005289 171.0
LYD1_k127_3267676_1 Fibronectin type 3 domain - - - 0.000000000000000000000000000000000000007633 159.0
LYD1_k127_3288757_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 6.087e-224 707.0
LYD1_k127_3288757_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 392.0
LYD1_k127_3288757_2 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 367.0
LYD1_k127_3288757_3 Inward rectifier potassium channel K08715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003842 312.0
LYD1_k127_3288757_5 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000002526 115.0
LYD1_k127_3288757_6 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000001696 107.0
LYD1_k127_3288757_7 PD-(D/E)XK nuclease superfamily - - - 0.000002467 50.0
LYD1_k127_3293624_0 E1-E2 ATPase K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 410.0
LYD1_k127_3293624_1 Sugar (and other) transporter K08139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 363.0
LYD1_k127_3315951_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 325.0
LYD1_k127_3315951_1 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 307.0
LYD1_k127_3315951_2 nucleotide metabolic process - - - 0.000000000000000000000000000000000000000000000000000005181 198.0
LYD1_k127_3315951_3 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000004001 183.0
LYD1_k127_3317476_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 5.764e-278 875.0
LYD1_k127_3317476_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 387.0
LYD1_k127_3317476_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000997 107.0
LYD1_k127_3333609_0 lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000006222 238.0
LYD1_k127_3333609_1 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000000000000000001341 126.0
LYD1_k127_3340473_0 ATP-dependent helicase activity K10844 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000001603 217.0
LYD1_k127_335052_0 Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities K00842,K14155 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 406.0
LYD1_k127_335052_1 Oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007473 310.0
LYD1_k127_335052_2 Provides the (R)-glutamate required for cell wall biosynthesis K01776 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002218 269.0
LYD1_k127_335052_3 beta-galactosidase activity - - - 0.00000000000000000000000000000000000000000000000003444 183.0
LYD1_k127_3363618_0 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 453.0
LYD1_k127_3363618_1 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000004573 139.0
LYD1_k127_3363618_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000005255 70.0
LYD1_k127_3366132_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 401.0
LYD1_k127_3366132_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 336.0
LYD1_k127_3368264_0 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 460.0
LYD1_k127_3368264_1 ethanolamine catabolic process K04027 - - 0.000000000000000000000000000000000000000000000000000000005359 203.0
LYD1_k127_3368264_2 Inosine-uridine preferring nucleoside hydrolase K01250 - - 0.000000000000000000000000000001802 128.0
LYD1_k127_3371330_0 MviN-like protein K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 578.0
LYD1_k127_3371330_1 Transcription factor zinc-finger - - - 0.000000000000000000000000000000000000000000000000006979 190.0
LYD1_k127_3373708_0 glycosyl transferase group 1 K00754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 469.0
LYD1_k127_3373708_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0052855,GO:0052856,GO:0052857 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 411.0
LYD1_k127_3373708_2 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.0000000000000000000000000000000000000000000000000000000000000005524 227.0
LYD1_k127_3373708_3 Hydrolase, P-loop family K06925 - - 0.0000000000000000000000006002 109.0
LYD1_k127_3373708_4 YacP-like NYN domain K06962 - - 0.00000000000004522 79.0
LYD1_k127_3373708_5 Xylose isomerase-like TIM barrel - - - 0.0000001715 53.0
LYD1_k127_3402255_0 PrkA AAA domain K07180 - - 2.605e-310 960.0
LYD1_k127_3402255_1 PFAM SpoVR family protein K06415 - - 0.0000000004093 63.0
LYD1_k127_3402255_2 Periplasmic or secreted lipoprotein - - - 0.0002238 52.0
LYD1_k127_3402615_0 Sulfatase-modifying factor enzyme 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 546.0
LYD1_k127_3402615_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 509.0
LYD1_k127_3402615_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000002362 152.0
LYD1_k127_3403671_0 aromatic amino acid beta-eliminating lyase threonine aldolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007492 389.0
LYD1_k127_3403671_1 heme-binding domain, Pirellula Verrucomicrobium type - - - 0.0000000000000000000001235 98.0
LYD1_k127_3405934_0 PFAM Mandelate racemase muconate lactonizing enzyme, N-terminal domain protein K01684 - 4.2.1.6 6.639e-201 633.0
LYD1_k127_3408142_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 340.0
LYD1_k127_3408142_1 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000006961 152.0
LYD1_k127_3408142_2 PFAM glycosyl transferase family 2 K07011 - - 0.0004308 46.0
LYD1_k127_3409306_0 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005406 606.0
LYD1_k127_3409306_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000007295 138.0
LYD1_k127_3409306_2 SMART Tetratricopeptide domain protein - - - 0.00007869 51.0
LYD1_k127_3415909_0 Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 423.0
LYD1_k127_3415909_1 Stress responsive A/B Barrel Domain - - - 0.00000000000000000000000000000000000000001887 156.0
LYD1_k127_3415909_2 Acetyltransferase (GNAT) domain - - - 0.00000000001044 67.0
LYD1_k127_3415909_3 Protein of unknown function (DUF1569) - - - 0.0000000002832 64.0
LYD1_k127_3415909_4 Carbohydrate family 9 binding domain-like - - - 0.000001322 53.0
LYD1_k127_3415909_5 Antibiotic biosynthesis monooxygenase - - - 0.00003364 50.0
LYD1_k127_3416266_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 374.0
LYD1_k127_3416266_1 polysaccharide export K01991,K16552 - - 0.000000000000000000000000000000000000001582 163.0
LYD1_k127_3416266_2 siderophore transport K02014 - - 0.0000000000000000000001837 104.0
LYD1_k127_3416266_3 O-Antigen ligase K18814 - - 0.000000000000001244 80.0
LYD1_k127_3422810_0 AAA domain K02282 - - 0.000000000000000000000000000000000000000004204 170.0
LYD1_k127_3425325_0 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 527.0
LYD1_k127_3425325_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000001373 216.0
LYD1_k127_3425325_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000001528 78.0
LYD1_k127_3425325_3 Xylose isomerase-like TIM barrel K00666,K21909 - 5.1.3.38 0.00000002817 55.0
LYD1_k127_3425354_0 carbohydrate kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 509.0
LYD1_k127_3425354_1 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003969 246.0
LYD1_k127_3425354_2 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.0000000000008904 72.0
LYD1_k127_3433263_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 583.0
LYD1_k127_3433263_1 B12 binding domain - - - 0.00000000000000000004427 91.0
LYD1_k127_3441869_0 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000004427 155.0
LYD1_k127_3443138_0 FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009192 341.0
LYD1_k127_3443138_1 Sigma-70 region 2 K03088 - - 0.000000000000000001402 89.0
LYD1_k127_3443138_2 Sigma-70 region 2 K03088 - - 0.000000001351 61.0
LYD1_k127_3455932_0 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 599.0
LYD1_k127_3457668_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 369.0
LYD1_k127_3457668_1 COGs COG4299 conserved - - - 0.0000000005811 60.0
LYD1_k127_3462966_0 thiolester hydrolase activity - - - 1.016e-201 648.0
LYD1_k127_3463190_0 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002603 256.0
LYD1_k127_3477498_0 lipopolysaccharide transport K22110 - - 0.0 1246.0
LYD1_k127_3477498_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000002022 154.0
LYD1_k127_3497358_0 PFAM Band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 338.0
LYD1_k127_3497358_1 Carbon-nitrogen hydrolase K03820 - - 0.0000000000000000000000000000000000000000001334 172.0
LYD1_k127_3497358_2 Sporulation related domain - - - 0.0000000000844 71.0
LYD1_k127_3514574_0 protein kinase activity K13582,K13924 - 2.1.1.80,3.1.1.61 8.253e-217 689.0
LYD1_k127_3514574_1 Molecular chaperone. Has ATPase activity K04079 - - 0.0000001454 56.0
LYD1_k127_3533406_0 Carbamoyltransferase C-terminus K00612 - - 3.674e-230 723.0
LYD1_k127_3533406_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008788 500.0
LYD1_k127_3533406_2 PFAM aminotransferase class V - - - 0.00000000000008145 72.0
LYD1_k127_3539786_0 MerR, DNA binding K19591 - - 0.000000000000005225 76.0
LYD1_k127_3539786_1 - - - - 0.00000000252 61.0
LYD1_k127_3539786_2 PFAM GCN5-related N-acetyltransferase - - - 0.00000001194 66.0
LYD1_k127_3539786_3 COG0835 Chemotaxis signal transduction protein - - - 0.000009839 48.0
LYD1_k127_3539786_4 cheY-homologous receiver domain K03413 - - 0.00004754 45.0
LYD1_k127_3539786_5 COG0784 FOG CheY-like receiver - - - 0.0005913 44.0
LYD1_k127_3541993_0 Allophanate hydrolase subunit 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000008048 231.0
LYD1_k127_3541993_1 Allophanate hydrolase subunit 2 K06350 - - 0.00000000000000000000000000000000000000000005063 169.0
LYD1_k127_3543674_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000003983 259.0
LYD1_k127_3543674_1 Glycosyl transferase, family 2 K01002,K20534 - 2.7.8.20 0.000000000000000000000003383 111.0
LYD1_k127_3543674_2 Glycosyl transferase, family 2 - - - 0.000000000002035 75.0
LYD1_k127_3543674_3 Peptidoglycan binding domain - - - 0.00000009365 57.0
LYD1_k127_3546468_0 Beta-galactosidase trimerisation domain K12308 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 305.0
LYD1_k127_3546468_1 IstB-like ATP binding protein K02315,K04076 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000248 225.0
LYD1_k127_3546468_2 MerR HTH family regulatory protein K13640 - - 0.0000000000000000000000000000000000001648 144.0
LYD1_k127_3557217_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 458.0
LYD1_k127_3557217_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 406.0
LYD1_k127_3557217_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009266 269.0
LYD1_k127_3557217_3 FecR protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001588 256.0
LYD1_k127_3557217_4 phosphorelay sensor kinase activity K03406,K07675,K17763 - 2.7.13.3 0.00006125 48.0
LYD1_k127_3557217_5 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.000149 53.0
LYD1_k127_3563400_0 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 415.0
LYD1_k127_3563400_1 ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000004287 217.0
LYD1_k127_3566256_0 Alpha-L-arabinofuranosidase C-terminus K01209 - 3.2.1.55 2.108e-234 734.0
LYD1_k127_3566256_1 PFAM Glycoside hydrolase 15-related - - - 3.781e-204 651.0
LYD1_k127_3566256_2 FAD dependent oxidoreductase - - - 1.191e-200 637.0
LYD1_k127_3566256_3 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009013 545.0
LYD1_k127_3566256_4 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.0000000000000000000000000000000000000000000000000000000000000000001554 248.0
LYD1_k127_3566256_6 peptidyl-prolyl cis-trans isomerase K01802 - 5.2.1.8 0.00000000000000000000000000000000000000000000000001099 185.0
LYD1_k127_3566256_7 GMC oxidoreductase - - - 0.00000000000000000000000000000000000008399 143.0
LYD1_k127_3566256_8 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000299 146.0
LYD1_k127_3566256_9 inositol 2-dehydrogenase activity - - - 0.0000000000000000002808 92.0
LYD1_k127_3571310_0 beta-galactosidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009 276.0
LYD1_k127_3571310_1 Domain of unknown function (DUF5107) - - - 0.000000000000000000000000000000000000000000000000000000000002046 228.0
LYD1_k127_3571310_2 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000000004928 169.0
LYD1_k127_359107_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00006135 55.0
LYD1_k127_360484_0 glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009942 429.0
LYD1_k127_360484_1 Belongs to the glycerate kinase type-1 family K00865 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 377.0
LYD1_k127_360484_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 295.0
LYD1_k127_360484_3 Xylose isomerase-like TIM barrel K03335 - 4.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001337 280.0
LYD1_k127_360484_4 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000000000000000000000000117 247.0
LYD1_k127_360484_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000024 168.0
LYD1_k127_360484_6 transmembrane transport - - - 0.00000000000000000000000000000000000000003242 162.0
LYD1_k127_360484_7 Outer membrane lipoprotein - - - 0.00000000000000000000000000000000000001416 155.0
LYD1_k127_360484_8 ADP binding - - - 0.00000000000000000000000000006089 129.0
LYD1_k127_360484_9 Psort location Cytoplasmic, score K00945,K01812,K16139 - 2.7.4.25,5.3.1.12 0.000000000000000000502 97.0
LYD1_k127_3616823_0 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000001089 136.0
LYD1_k127_3616823_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.0000000000000000000000000000000001716 138.0
LYD1_k127_3616823_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000005581 109.0
LYD1_k127_3630215_0 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0008150,GO:0008932,GO:0008933,GO:0009893,GO:0016020,GO:0016740,GO:0016757,GO:0019222,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043085,GO:0044093,GO:0044464,GO:0048518,GO:0050789,GO:0050790,GO:0051341,GO:0051353,GO:0061783,GO:0065007,GO:0065009 - 0.00000000000000000001939 97.0
LYD1_k127_3639718_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 3.305e-220 704.0
LYD1_k127_3639718_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579 455.0
LYD1_k127_3639718_2 Trehalose utilisation K09992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002003 275.0
LYD1_k127_3639718_3 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001289 278.0
LYD1_k127_3639718_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000005995 210.0
LYD1_k127_3639718_5 Conserved hypothetical protein 95 - - - 0.0000000000000000000000000000000000000001718 158.0
LYD1_k127_3639718_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000001775 134.0
LYD1_k127_3639718_7 Tetratricopeptide repeat - - - 0.00000000000000001592 89.0
LYD1_k127_3639718_8 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000001644 55.0
LYD1_k127_3648535_0 Uncharacterized protein family (UPF0051) K09014 - - 8.485e-275 849.0
LYD1_k127_3648535_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 318.0
LYD1_k127_3648535_2 Transcriptional regulator - - - 0.0000000000000000000000000000001438 134.0
LYD1_k127_3648535_3 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.00000000000000000000000000001852 119.0
LYD1_k127_3665257_0 Belongs to the BshC family K22136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 345.0
LYD1_k127_3665257_1 DAHP synthetase I family K01627 - 2.5.1.55 0.000000000000000008043 84.0
LYD1_k127_3666840_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007281 559.0
LYD1_k127_367063_0 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000003078 85.0
LYD1_k127_367063_1 Phage integrase family - - - 0.00000000000003954 77.0
LYD1_k127_367063_2 TadE-like protein - - - 0.00000009226 61.0
LYD1_k127_367063_3 TadE-like protein - - - 0.000000286 59.0
LYD1_k127_3672709_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.0 1375.0
LYD1_k127_3672709_1 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000773 482.0
LYD1_k127_3682483_0 PFAM Carbohydrate kinase K00853 - 2.7.1.16 1.768e-246 771.0
LYD1_k127_3682483_1 L-fucose isomerase, C-terminal domain - - - 3.702e-228 716.0
LYD1_k127_3682483_2 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852 - 2.7.1.15,2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 369.0
LYD1_k127_3682483_3 Beta-galactosidase trimerisation domain K12308 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 327.0
LYD1_k127_3688382_0 Phosphate transporter family K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 444.0
LYD1_k127_3688382_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 341.0
LYD1_k127_3688382_2 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000003185 205.0
LYD1_k127_3691812_0 acetylesterase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333 408.0
LYD1_k127_3691812_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 360.0
LYD1_k127_3691812_2 PhoD-like phosphatase K01113 - 3.1.3.1 0.0000000000000000000000000009599 117.0
LYD1_k127_3691812_3 transmembrane transporter activity K08191 - - 0.0000000000000004199 79.0
LYD1_k127_3691812_4 Carboxypeptidase regulatory-like domain - - - 0.00001278 53.0
LYD1_k127_3704487_0 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005385 267.0
LYD1_k127_3704487_1 - - - - 0.0000000000000000000000000000000000000000000003783 182.0
LYD1_k127_3704487_2 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000000007403 113.0
LYD1_k127_3704487_3 PFAM Inosine uridine-preferring nucleoside hydrolase K01239,K01250 - 3.2.2.1 0.00000000000000000000772 98.0
LYD1_k127_3704487_4 Melibiase K07407 - 3.2.1.22 0.000000000000001047 80.0
LYD1_k127_3705269_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001913 267.0
LYD1_k127_3705269_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000006589 220.0
LYD1_k127_3705269_2 R3H domain K06346 - - 0.00000000000000000000001378 106.0
LYD1_k127_3714940_0 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007419 247.0
LYD1_k127_3714940_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000003905 185.0
LYD1_k127_3714940_2 PFAM Integrase catalytic region - - - 0.0000000000001176 73.0
LYD1_k127_3718950_0 ANTAR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 435.0
LYD1_k127_3718950_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 406.0
LYD1_k127_3718950_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 325.0
LYD1_k127_3718950_3 Phosphoesterase K07098 - - 0.0000000000000000000000002635 109.0
LYD1_k127_3720701_0 PFAM SAICAR synthetase K01923,K13713 - 6.3.2.6,6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 414.0
LYD1_k127_3720701_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007568 370.0
LYD1_k127_3720701_2 PHP domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000002206 164.0
LYD1_k127_3720701_3 PFAM Colicin V production K03558 - - 0.000000000000000000000000000004797 126.0
LYD1_k127_3720701_4 Bacterial regulatory protein, Fis family - - - 0.000000000000001359 78.0
LYD1_k127_3720701_5 PHP domain K07053 - 3.1.3.97 0.0000000000001176 73.0
LYD1_k127_3720701_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.00000000006933 63.0
LYD1_k127_3728636_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1219.0
LYD1_k127_3728636_1 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000000000000000000008135 169.0
LYD1_k127_3728636_2 efflux transmembrane transporter activity K02004 - - 0.000000003116 64.0
LYD1_k127_373167_0 beta-N-acetylhexosaminidase activity K12373 - 3.2.1.52 6.221e-195 625.0
LYD1_k127_373167_1 chitin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 329.0
LYD1_k127_373167_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000002748 144.0
LYD1_k127_373167_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000003989 49.0
LYD1_k127_374506_0 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 291.0
LYD1_k127_374506_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000001832 207.0
LYD1_k127_374506_2 helix_turn_helix, mercury resistance K13640 - - 0.0000000000000000000004586 100.0
LYD1_k127_374562_0 four-way junction helicase activity K03550 GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 0.00000000000000000000000000000000000000000000000000308 188.0
LYD1_k127_374562_1 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000000000000000001158 189.0
LYD1_k127_374562_2 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000000001276 122.0
LYD1_k127_374562_3 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.000000000000000000000000000004115 121.0
LYD1_k127_374562_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000001118 97.0
LYD1_k127_374562_5 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.0000000000000000000021 96.0
LYD1_k127_3747597_0 Psort location Cytoplasmic, score 8.87 K02564 - 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 408.0
LYD1_k127_3747597_1 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 362.0
LYD1_k127_3747597_2 transcriptional K02081 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007555 291.0
LYD1_k127_3747597_3 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000009479 226.0
LYD1_k127_3747597_4 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000008072 104.0
LYD1_k127_375730_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 312.0
LYD1_k127_375730_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000008401 198.0
LYD1_k127_375730_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000002173 191.0
LYD1_k127_3761741_0 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.000000000000007078 77.0
LYD1_k127_3761741_2 Sigma-70, region 4 K02405 - - 0.000000338 58.0
LYD1_k127_3761741_3 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.0000005972 53.0
LYD1_k127_3769336_0 Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000003078 230.0
LYD1_k127_3769336_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000001174 178.0
LYD1_k127_378109_0 Amino acid adenylation domain - - - 3.18e-208 669.0
LYD1_k127_3783680_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 358.0
LYD1_k127_3783680_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 335.0
LYD1_k127_3783680_2 Modulates RecA activity K03565 - - 0.00000000000132 76.0
LYD1_k127_3785324_0 Domain of unknown function (DUF5107) - - - 4.57e-308 979.0
LYD1_k127_3785324_1 Uncharacterised conserved protein (DUF2156) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001335 269.0
LYD1_k127_3785324_2 BON domain - - - 0.000000000003569 74.0
LYD1_k127_3785324_3 PFAM alpha beta hydrolase K06889,K07397 - - 0.00009044 53.0
LYD1_k127_3801817_0 PFAM Adenosine specific kinase K09129 - - 0.0000000000000000000000000000000000000000000000000000000000000000003063 238.0
LYD1_k127_3801817_1 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.00000000000000000000000000000002017 128.0
LYD1_k127_3801817_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000009105 116.0
LYD1_k127_3827782_0 PFAM glycoside hydrolase family 39 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008467 245.0
LYD1_k127_3827782_1 peptidyl-tyrosine sulfation - - - 0.00001158 55.0
LYD1_k127_3838866_0 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000000000002251 195.0
LYD1_k127_3838866_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000003967 83.0
LYD1_k127_3840370_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000006821 221.0
LYD1_k127_384239_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008166 578.0
LYD1_k127_384239_1 PFAM peptidase M16 domain protein K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 384.0
LYD1_k127_384239_2 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000000000000000000000001746 197.0
LYD1_k127_3863205_0 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 298.0
LYD1_k127_3863205_1 Tetratricopeptide repeat - - - 0.000000000000000008313 88.0
LYD1_k127_386424_0 Hypothetical glycosyl hydrolase 6 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 597.0
LYD1_k127_386424_1 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000003147 241.0
LYD1_k127_386424_2 beta-galactosidase activity - - - 0.00000000000000000000000000000000000000001752 154.0
LYD1_k127_3865110_0 EamA-like transporter family - - - 0.000000000000000000000000002284 124.0
LYD1_k127_3865110_1 Pfam Amidohydrolase K12960 - 3.5.4.28,3.5.4.31 0.0000000000007236 71.0
LYD1_k127_3890240_0 NAD(P)H-binding K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000008187 244.0
LYD1_k127_3890240_1 WD40 domain protein beta Propeller - - - 0.000000000000000000000000000000000000000000000000000000001026 207.0
LYD1_k127_3890240_2 DnaJ-class molecular chaperone with C-terminal Zn finger domain - - - 0.000000000001533 80.0
LYD1_k127_3892721_0 PFAM Pyrrolo-quinoline quinone K00117 - 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006738 436.0
LYD1_k127_3892721_1 Ankyrin repeat and KH K16726 GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0009605,GO:0009607,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010506,GO:0010507,GO:0010639,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0016043,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022607,GO:0023052,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0040011,GO:0042692,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044085,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0045087,GO:0045214,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051146,GO:0051704,GO:0051707,GO:0051716,GO:0055001,GO:0055002,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071840,GO:0090596,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:1903146,GO:1903147 - 0.00000009169 56.0
LYD1_k127_3912091_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 521.0
LYD1_k127_3912091_1 Belongs to the ATPase B chain family K02109 - - 0.0006817 46.0
LYD1_k127_3945789_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 303.0
LYD1_k127_3945789_1 Sporulation and spore germination - - - 0.000000000000000000000000006894 117.0
LYD1_k127_3945789_2 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000002209 115.0
LYD1_k127_3945789_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000001513 61.0
LYD1_k127_3973946_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 492.0
LYD1_k127_3995548_0 phosphorelay sensor kinase activity K07710,K10942 - 2.7.13.3 0.00000000000000000000000000000000008849 150.0
LYD1_k127_3995548_1 Belongs to the ompA family - - - 0.00000000000000218 78.0
LYD1_k127_3995548_2 Tetratricopeptide repeat - - - 0.000002905 53.0
LYD1_k127_4003844_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 6.607e-262 815.0
LYD1_k127_4003844_1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0031403,GO:0031420,GO:0042578,GO:0043167,GO:0043169,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0046872,GO:0047954,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.0000000000000000000000000000000000000000005082 168.0
LYD1_k127_4003844_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000000000000000000000002204 145.0
LYD1_k127_4003844_3 Aminotransferase class I and II K00639 - 2.3.1.29 0.00000000000000000000000000003661 120.0
LYD1_k127_4003844_4 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000001483 81.0
LYD1_k127_4004902_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003804 389.0
LYD1_k127_4004902_1 FMN reductase (NADPH) activity - - - 0.00000000000000000000000000000000000000000000000000000000000005551 219.0
LYD1_k127_4004902_2 CYTH domain - - - 0.0000000000000000000000000000000000000000000000000003288 189.0
LYD1_k127_4013525_0 Two component transcriptional regulator, winged helix family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000549 246.0
LYD1_k127_4013525_1 His Kinase A (phosphoacceptor) domain K02484,K07636 - 2.7.13.3 0.0000000000000000000000000000000000000003442 170.0
LYD1_k127_4013525_2 - - - - 0.000000000000000171 83.0
LYD1_k127_4032022_0 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 402.0
LYD1_k127_4032022_1 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 323.0
LYD1_k127_4032022_2 Iron-storage protein K02217 - 1.16.3.2 0.0000000001914 63.0
LYD1_k127_4034906_0 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 341.0
LYD1_k127_4034906_1 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000002206 210.0
LYD1_k127_4034906_2 peptidyl-tyrosine sulfation - - - 0.0000000009289 61.0
LYD1_k127_4053478_0 ABC transporter K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009673 394.0
LYD1_k127_4053478_1 FeS assembly protein SufD K07033,K09015 GO:0006790,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 395.0
LYD1_k127_406724_0 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 422.0
LYD1_k127_406724_1 PFAM sulfatase - - - 0.00000000006764 64.0
LYD1_k127_4079864_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.0 1670.0
LYD1_k127_4081496_0 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 366.0
LYD1_k127_4081496_1 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000002136 252.0
LYD1_k127_4081496_2 bacterial-type flagellum organization K02398 - - 0.000001062 55.0
LYD1_k127_4093521_0 Glycosyl hydrolase family 20, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 373.0
LYD1_k127_4093521_1 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000038 225.0
LYD1_k127_4093521_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000005546 159.0
LYD1_k127_4096459_0 4 iron, 4 sulfur cluster binding K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000001112 234.0
LYD1_k127_4096459_1 Glycine cleavage H-protein - - - 0.000000000000000000000000000007899 127.0
LYD1_k127_4104932_0 SNF2 Helicase protein - - - 2.638e-276 877.0
LYD1_k127_4104932_1 SWIM zinc finger - - - 0.00000000000000000000000000000000000000000000000000006072 192.0
LYD1_k127_4104932_2 PFAM Rubrerythrin - - - 0.00000000007315 63.0
LYD1_k127_4105100_0 PFAM Mandelate racemase muconate lactonizing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 396.0
LYD1_k127_4105100_1 Hypothetical methyltransferase K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 390.0
LYD1_k127_4105100_2 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007145 331.0
LYD1_k127_4105100_3 pyrroloquinoline quinone binding K12349 - 3.5.1.23 0.0000000000000000000000000000000000000000000000000000002055 213.0
LYD1_k127_4105100_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000001391 173.0
LYD1_k127_4105100_5 PFAM Mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000001135 122.0
LYD1_k127_4128085_0 aminoacyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009514 462.0
LYD1_k127_4128085_1 Aminotransferase class I and II K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 355.0
LYD1_k127_4128085_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000009011 258.0
LYD1_k127_4128085_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000007424 231.0
LYD1_k127_4128085_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000137 202.0
LYD1_k127_4128085_5 PFAM peptidase M50 - - - 0.0000000000000000000000000000000000000000000002266 173.0
LYD1_k127_4128085_6 Peptidase family M23 - - - 0.00000000000000000000000000000000000000003856 162.0
LYD1_k127_4142122_0 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 402.0
LYD1_k127_4142122_1 Two component transcriptional regulator, winged helix family K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 338.0
LYD1_k127_4142122_2 Diguanylate cyclase - - - 0.000000000000000000000000000001421 140.0
LYD1_k127_4142122_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000003165 113.0
LYD1_k127_4144102_0 Tetratricopeptide repeat - - - 0.00000000005437 72.0
LYD1_k127_4144102_1 TPR Domain containing protein K12600 - - 0.000000001638 69.0
LYD1_k127_4150699_0 PFAM Glycoside hydrolase, clan GH-D K07407 - 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 514.0
LYD1_k127_4150699_1 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000001824 217.0
LYD1_k127_4150699_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000004978 135.0
LYD1_k127_4150699_3 efflux transmembrane transporter activity - - - 0.00000000000000000000006215 103.0
LYD1_k127_4166478_0 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 480.0
LYD1_k127_4166478_1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.000000000000000000000000000000002958 131.0
LYD1_k127_4166478_2 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000001878 80.0
LYD1_k127_4166478_3 Cold-shock' K03704 - - 0.0007219 46.0
LYD1_k127_4166655_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 480.0
LYD1_k127_4166655_1 efflux transmembrane transporter activity K15725 - - 0.00000000000000000000000000000000000003015 158.0
LYD1_k127_4166655_2 preribosome binding K07574 GO:0000027,GO:0000028,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043021,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1990275 - 0.000000000002419 70.0
LYD1_k127_4174701_0 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000133 265.0
LYD1_k127_4174701_1 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000003739 163.0
LYD1_k127_4174701_2 - - - - 0.00000000000000000000000000000000000001858 149.0
LYD1_k127_4181494_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006513 345.0
LYD1_k127_4181494_1 MgtE intracellular - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007576 331.0
LYD1_k127_4181494_2 PFAM natural resistance-associated macrophage protein - - - 0.00000000000000000000000003667 108.0
LYD1_k127_4187471_0 Belongs to the universal ribosomal protein uS5 family K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000001593 233.0
LYD1_k127_4187471_1 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000007365 204.0
LYD1_k127_4187471_2 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000002068 152.0
LYD1_k127_4187471_3 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000001056 72.0
LYD1_k127_4187471_4 Binds to the 23S rRNA K02876 - - 0.0001028 45.0
LYD1_k127_4188550_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 491.0
LYD1_k127_4188550_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009993 339.0
LYD1_k127_4188550_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000001759 173.0
LYD1_k127_4188550_3 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000002299 171.0
LYD1_k127_4196610_0 Winged helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 422.0
LYD1_k127_4199346_0 phenylalanyl-tRNA synthetase beta subunit K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003005 449.0
LYD1_k127_4199346_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 397.0
LYD1_k127_4225752_0 Protein of unknown function (DUF4038) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 524.0
LYD1_k127_4225752_1 beta-galactosidase activity K01195 - 3.2.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001271 290.0
LYD1_k127_4225752_2 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000003787 237.0
LYD1_k127_4229627_0 Thioesterase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 310.0
LYD1_k127_4229627_1 Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002776 256.0
LYD1_k127_423602_0 Yip1 domain - - - 0.000000000000000006693 93.0
LYD1_k127_423602_1 signal peptide peptidase SppA, 36K type K04773 - - 0.000006552 54.0
LYD1_k127_4237109_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007714 502.0
LYD1_k127_4237109_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000801 466.0
LYD1_k127_4237109_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 376.0
LYD1_k127_4237109_3 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000005932 179.0
LYD1_k127_4237109_4 Mitochondrial small ribosomal subunit Rsm22 - - - 0.000000000000000000000000000000000000000000001628 181.0
LYD1_k127_4237109_5 Preprotein translocase subunit K03210 - - 0.00000000000000007292 83.0
LYD1_k127_4247969_0 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000002434 185.0
LYD1_k127_4247969_1 Tetratricopeptide repeat - - - 0.000000000000000000000000009725 124.0
LYD1_k127_4247969_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000004023 57.0
LYD1_k127_4249337_0 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 315.0
LYD1_k127_4249337_1 Transposase DDE domain - - - 0.00000000000000000000000000000000000007253 144.0
LYD1_k127_4249337_2 - - - - 0.000000000000002808 90.0
LYD1_k127_4253609_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1253.0
LYD1_k127_4253609_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 482.0
LYD1_k127_4253609_2 Protein of unknown function (DUF1385) - - - 0.0000000000000000000000000000000000000000000000000000000000000000005264 235.0
LYD1_k127_4253609_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000007553 238.0
LYD1_k127_4253609_4 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000001455 242.0
LYD1_k127_4253609_5 CBS domain - - - 0.000000000000000000000000000000000000000000000004523 176.0
LYD1_k127_4253609_6 AhpC/TSA family - - - 0.00000000000000000000000000000000000000000002601 166.0
LYD1_k127_4253609_7 HIT domain K02503 - - 0.000000000000000000000000000000000000002591 149.0
LYD1_k127_4255878_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000001551 265.0
LYD1_k127_4255878_1 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000002858 121.0
LYD1_k127_4257935_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003093 336.0
LYD1_k127_4257935_1 L-lactate permease K03303 - - 0.00000000002151 64.0
LYD1_k127_4271275_0 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 327.0
LYD1_k127_4271275_1 Adenylate cyclase - - - 0.000008183 49.0
LYD1_k127_4277636_0 peptidyl-tyrosine sulfation K01277 - 3.4.14.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 418.0
LYD1_k127_4277636_1 Type I restriction enzyme R protein N terminus (HSDR_N) K01153 - 3.1.21.3 0.0000000000000000000000000000000000000000000000000000007653 196.0
LYD1_k127_4277636_2 - - - - 0.00000377 49.0
LYD1_k127_4278775_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002553 285.0
LYD1_k127_4278775_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00002997 47.0
LYD1_k127_4281204_0 lipoprotein localization to outer membrane K02004 - - 0.000000000000000000000000000000000000000000000006196 180.0
LYD1_k127_4281204_1 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000004508 140.0
LYD1_k127_4281204_2 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000002496 116.0
LYD1_k127_4287318_0 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000005689 91.0
LYD1_k127_4295777_0 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000005959 264.0
LYD1_k127_4295777_1 HAD-superfamily hydrolase, subfamily IIB - - - 0.000000000000000000000000000000000000001287 158.0
LYD1_k127_4295777_2 Cold shock K03704 - - 0.000000000000000000000002938 104.0
LYD1_k127_4297857_0 PFAM aldo keto reductase - - - 0.0000000000000002287 80.0
LYD1_k127_4297857_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000001029 70.0
LYD1_k127_4300102_0 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 478.0
LYD1_k127_4321479_0 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000006583 166.0
LYD1_k127_4321479_1 deoxyribonuclease IV (phage-T4-induced) activity K01151 GO:0000726,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008833,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.21.2 0.000000000000000000003607 95.0
LYD1_k127_4321479_2 phosphoglycerate mutase family - - - 0.000000000000000000006794 100.0
LYD1_k127_4334078_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 368.0
LYD1_k127_4334078_1 Domain of unknown function DUF11 - - - 0.00000006423 65.0
LYD1_k127_434335_0 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299,K03281 - 3.4.17.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 588.0
LYD1_k127_4348907_0 beta-galactosidase activity - - - 8.436e-300 941.0
LYD1_k127_4348907_1 Peptidase family C69 K14358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 302.0
LYD1_k127_4350373_0 Belongs to the MlaE permease family K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004515 270.0
LYD1_k127_4350373_1 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000004122 244.0
LYD1_k127_4350373_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.00000000000000000000000000000000000000000000000000000002469 199.0
LYD1_k127_4350373_3 MlaD protein K02067 - - 0.00000000000000000000000000173 116.0
LYD1_k127_4350373_4 MlaD protein K02067 - - 0.00000000000000001013 87.0
LYD1_k127_435242_1 Transposase IS200 like K07491 - - 0.000002443 50.0
LYD1_k127_4363499_0 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000002827 245.0
LYD1_k127_4363499_1 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000000000000000000000000000000000000000000002361 216.0
LYD1_k127_4365184_0 - - - - 0.0 1201.0
LYD1_k127_4384332_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 415.0
LYD1_k127_4384332_1 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000003473 93.0
LYD1_k127_4384332_2 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.00000000009315 66.0
LYD1_k127_4395537_0 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005257 371.0
LYD1_k127_4395537_1 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000002499 218.0
LYD1_k127_43962_0 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 369.0
LYD1_k127_43962_1 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000309 153.0
LYD1_k127_43962_2 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000000000014 123.0
LYD1_k127_43962_3 multi-organism process K03195 - - 0.00000000000000107 91.0
LYD1_k127_440353_0 Methanol-cobalamin methyltransferase B subunit K04480 - 2.1.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 521.0
LYD1_k127_440353_2 YCII-related domain - - - 0.000000000000000000000000127 113.0
LYD1_k127_440353_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00006615 51.0
LYD1_k127_4425139_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 383.0
LYD1_k127_4425139_1 Integrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003443 263.0
LYD1_k127_4425139_2 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.000000000000000000000000000000000000000000000000000000000000000000000000003034 260.0
LYD1_k127_4425139_3 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000005355 109.0
LYD1_k127_4428547_0 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000007707 231.0
LYD1_k127_4428547_1 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 - 3.4.16.4 0.0000000000000000000000000000000001692 151.0
LYD1_k127_4428547_2 Phosphate acyltransferases K05939 - 2.3.1.40,6.2.1.20 0.0000000000002129 70.0
LYD1_k127_4428751_0 Putative esterase - - - 9.06e-271 847.0
LYD1_k127_4428751_1 - - - - 0.000000000000867 70.0
LYD1_k127_4430971_0 RNA polymerase sigma-54 factor K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 565.0
LYD1_k127_4430971_1 PFAM ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 343.0
LYD1_k127_4430971_2 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K09774 - - 0.00000000000000000000000000000001176 145.0
LYD1_k127_4430971_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000001559 135.0
LYD1_k127_4439765_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 1.982e-243 771.0
LYD1_k127_4439765_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000001109 129.0
LYD1_k127_4439765_2 - - - - 0.000000001023 67.0
LYD1_k127_4439765_3 Putative zinc-finger - - - 0.000888 49.0
LYD1_k127_4457530_0 - - - - 0.000000000000000000000000000000000000000000004322 177.0
LYD1_k127_4457530_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 2.1.1.63 0.000000000000000000000000000000000000000001375 161.0
LYD1_k127_4457530_2 - - - - 0.0000000000000000000000000000000000000007632 156.0
LYD1_k127_4462867_0 - - - - 0.00000000000000000000000000000000000005714 154.0
LYD1_k127_4462867_1 Serine threonine protein kinase K08282 - 2.7.11.1 0.0006797 48.0
LYD1_k127_4478398_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 584.0
LYD1_k127_4478398_1 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000000000000000000000007261 190.0
LYD1_k127_4478398_2 Pfam:DUF59 K02612 - - 0.000000000000000000000000000000000001886 141.0
LYD1_k127_4478398_3 Uncharacterized protein family (UPF0051) K09015 - - 0.00002409 48.0
LYD1_k127_4480434_0 PFAM Aminotransferase class I and II K10206,K14261 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 571.0
LYD1_k127_4480434_1 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000412 266.0
LYD1_k127_4480434_2 Dienelactone hydrolase family - - - 0.00000000000000000000000002466 120.0
LYD1_k127_4481471_0 PFAM RNA-directed DNA polymerase (Reverse transcriptase) K00986,K15342 - 2.7.7.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000403 576.0
LYD1_k127_4481471_1 HYR domain - - - 0.0000000007278 64.0
LYD1_k127_4483320_0 von Willebrand factor, type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001549 268.0
LYD1_k127_4483320_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.00000000000000005855 86.0
LYD1_k127_4489940_0 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000002381 252.0
LYD1_k127_4489940_1 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000001164 214.0
LYD1_k127_4489940_2 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000005372 66.0
LYD1_k127_4507424_0 Nucleic acid binding K03698 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 374.0
LYD1_k127_4507424_1 negative regulation of transcription, DNA-templated - - - 0.00000000000000007837 87.0
LYD1_k127_4524262_0 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 321.0
LYD1_k127_4524262_1 L-lactate permease K03303 - - 0.00000000000000000000000000000000000000000000000000002043 194.0
LYD1_k127_4525888_0 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 456.0
LYD1_k127_4525888_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000001886 138.0
LYD1_k127_4525888_2 Glycosyltransferase like family 2 - - - 0.0002699 44.0
LYD1_k127_4554480_0 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 3.939e-221 692.0
LYD1_k127_4554480_1 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000414 183.0
LYD1_k127_4554480_2 CoA binding domain - - - 0.00000000000000000000000000001033 123.0
LYD1_k127_4554480_3 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000001874 123.0
LYD1_k127_4554480_4 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000003317 92.0
LYD1_k127_4554480_5 Transposase IS200 like - - - 0.00001723 51.0
LYD1_k127_4562297_0 carboxylic acid catabolic process K01187 - 3.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 606.0
LYD1_k127_4576012_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 1.234e-207 657.0
LYD1_k127_4576012_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 451.0
LYD1_k127_4576012_2 DDE superfamily endonuclease K07494 - - 0.000000000000000000000000000000000000000000000007103 184.0
LYD1_k127_4576012_3 Winged helix-turn helix - - - 0.000000000000000000000000000001002 128.0
LYD1_k127_4576012_4 PFAM flagellar protein FliS K02422 - - 0.000000000000000000000003807 107.0
LYD1_k127_4576882_0 DEAD/H associated K03724 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 392.0
LYD1_k127_4590455_0 glycosyl hydrolase of K09955 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003498 450.0
LYD1_k127_4590455_1 Cupin 2, conserved barrel domain protein K19547 - 5.3.3.19 0.00000000000000000000000000000000000000000000000000000000003144 209.0
LYD1_k127_4590455_2 - - - - 0.0000000001202 65.0
LYD1_k127_4605326_0 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 305.0
LYD1_k127_4605326_1 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000008108 262.0
LYD1_k127_4605326_2 ThiS family K03636 - - 0.0000000000000000000000000002332 116.0
LYD1_k127_4605326_3 PFAM glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 - 3.2.1.51 0.0000003706 56.0
LYD1_k127_4612553_0 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006792 406.0
LYD1_k127_4612553_1 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 334.0
LYD1_k127_4612553_2 glyoxalase III activity K13653 - - 0.0000000000000000000000000000000000000000000000000000000006202 208.0
LYD1_k127_4612553_3 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000001643 202.0
LYD1_k127_4612553_4 - K19693 - - 0.000000000000000000000000000000000006621 153.0
LYD1_k127_4612553_5 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000003233 89.0
LYD1_k127_4618827_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 5.872e-210 669.0
LYD1_k127_4618827_1 Amino acid permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 538.0
LYD1_k127_4618827_2 Belongs to the UPF0173 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 289.0
LYD1_k127_4618827_3 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000002664 187.0
LYD1_k127_4618827_4 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000002771 184.0
LYD1_k127_4618827_5 Putative regulatory protein - - - 0.000000000000000000000003589 104.0
LYD1_k127_4618827_6 - - - - 0.000000000000000000002186 100.0
LYD1_k127_4623381_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K03820 - - 0.0000000000000000000000000000000000008232 143.0
LYD1_k127_4623381_1 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.000000000000000000000000000001836 122.0
LYD1_k127_4623381_2 Protein of unknown function (DUF1232) K01874 - 6.1.1.10 0.0000000000000000000000000008741 117.0
LYD1_k127_4623381_3 oxidoreductase activity K12511 - - 0.0000000000000000000002733 108.0
LYD1_k127_463006_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 362.0
LYD1_k127_463006_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001295 277.0
LYD1_k127_463006_2 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.00000000000000000000000000000000000000000000000000000000000001127 233.0
LYD1_k127_463006_3 desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000004676 199.0
LYD1_k127_463006_4 response regulator - - - 0.00000000000000000000000000000000000003692 160.0
LYD1_k127_463006_5 desaturase K00507 - 1.14.19.1 0.000000000000000000000000000006516 120.0
LYD1_k127_463006_6 PASTA domain K12132 - 2.7.11.1 0.00000000000000000000002615 108.0
LYD1_k127_463006_7 Fatty acid desaturase K00507 - 1.14.19.1 0.0000114 47.0
LYD1_k127_4636895_0 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 324.0
LYD1_k127_4636895_1 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005901 248.0
LYD1_k127_4636895_2 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000001066 217.0
LYD1_k127_4636895_4 PFAM SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000009474 164.0
LYD1_k127_4645539_0 Putative glycosyl hydrolase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007443 378.0
LYD1_k127_4645539_1 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000263 239.0
LYD1_k127_4645539_2 PFAM oxidoreductase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001609 233.0
LYD1_k127_4658186_0 MbtH-like protein K05375 - - 0.00000000000000000000000000000001221 127.0
LYD1_k127_4659029_0 helicase activity - - - 0.0 1039.0
LYD1_k127_4659029_1 Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000511 51.0
LYD1_k127_4662100_0 phosphoglucosamine mutase activity K00971,K01840 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.7.13,5.4.2.8 1.228e-211 689.0
LYD1_k127_4662100_1 Phosphomannose isomerase type I K01809 - 5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000002931 290.0
LYD1_k127_4662100_2 Domain of unknown function (DUF1820) - - - 0.0000000000000000000000000000000001499 135.0
LYD1_k127_4662100_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000011 106.0
LYD1_k127_4662100_4 TIGRFAM mannose-6-phosphate isomerase, class I K01809 - 5.3.1.8 0.00000006976 58.0
LYD1_k127_4662355_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007059 301.0
LYD1_k127_4662355_1 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000006281 265.0
LYD1_k127_4662355_2 PFAM Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000007691 179.0
LYD1_k127_4662355_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000127 159.0
LYD1_k127_4662355_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000009447 153.0
LYD1_k127_4662355_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000009638 107.0
LYD1_k127_467805_0 Melibiase K07407 GO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0009056,GO:0015925,GO:0016137,GO:0016139,GO:0016787,GO:0016798,GO:0042802,GO:0042803,GO:0046983,GO:0071704,GO:1901135,GO:1901136,GO:1901575,GO:1901657,GO:1901658 3.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 422.0
LYD1_k127_467805_1 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000589 216.0
LYD1_k127_467805_2 Domain of unknown function (DUF4338) - - - 0.0000000002613 61.0
LYD1_k127_4679464_0 two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 458.0
LYD1_k127_4679464_1 Dehydrogenase K00030,K00052 - 1.1.1.41,1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 331.0
LYD1_k127_4679464_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000004153 237.0
LYD1_k127_4679464_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03116 - - 0.00000000003554 65.0
LYD1_k127_4680210_0 Vault protein inter-alpha-trypsin domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 339.0
LYD1_k127_4680210_1 - K19693 - - 0.00000000000000000000000000002562 124.0
LYD1_k127_4688513_0 NAD(P)H-binding K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000007567 220.0
LYD1_k127_4688513_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000003853 222.0
LYD1_k127_4689561_0 D-mannonate dehydratase (UxuA) K01686 - 4.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 449.0
LYD1_k127_4689561_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 342.0
LYD1_k127_4689561_2 Alpha-L-rhamnosidase N-terminal domain K05989 - 3.2.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 326.0
LYD1_k127_4689561_3 - - - - 0.00000000000000000138 94.0
LYD1_k127_4692622_0 phosphorelay signal transduction system K02481,K02584,K07712 - - 0.00000000000000000000000000000001639 133.0
LYD1_k127_4692622_1 Belongs to the terpene cyclase mutase family K06045 - 4.2.1.129,5.4.99.17 0.0005362 51.0
LYD1_k127_4708366_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006191 452.0
LYD1_k127_4708366_1 NmrA-like family K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004824 419.0
LYD1_k127_4708366_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 411.0
LYD1_k127_4708366_3 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000001078 222.0
LYD1_k127_4708366_4 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000003712 199.0
LYD1_k127_4708366_5 metal-dependent protease of the PAD1 JAB1 superfamily K21140 - 3.13.1.6 0.00000000000000077 80.0
LYD1_k127_4708366_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.0000001532 61.0
LYD1_k127_4708366_7 JAB/MPN domain - - - 0.0003504 44.0
LYD1_k127_4713254_0 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000002189 174.0
LYD1_k127_4713254_1 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000007439 137.0
LYD1_k127_4713254_2 multi-organism process K03195 - - 0.000000000000000000000000004903 119.0
LYD1_k127_4713254_3 Putative peptidoglycan binding domain - - - 0.0000000765 62.0
LYD1_k127_4713254_4 - - - - 0.0000003719 60.0
LYD1_k127_4715606_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 315.0
LYD1_k127_4717483_0 Cupin 2, conserved barrel - - - 0.000000000000000000000000000000000000004454 151.0
LYD1_k127_4717483_1 Tetratricopeptide repeat - - - 0.0000000000000000001931 94.0
LYD1_k127_4778694_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 495.0
LYD1_k127_4778694_1 RNA binding K06959 - - 0.00000000001174 71.0
LYD1_k127_4786700_0 TOBE domain K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 311.0
LYD1_k127_4786700_1 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002987 247.0
LYD1_k127_4786700_2 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000004725 179.0
LYD1_k127_4790571_0 PFAM Cytochrome c assembly protein K02198 - - 1.28e-211 677.0
LYD1_k127_4790571_1 Cytochrome C assembly protein K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016021,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0031224,GO:0031226,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.00000000000000000000000000000000000000000000000000000000000000000003101 238.0
LYD1_k127_4790571_2 ATPases associated with a variety of cellular activities K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000001214 200.0
LYD1_k127_4790571_3 ABC-type transport system involved in cytochrome c biogenesis, permease component K02194 - - 0.0000000000000000000000000000000000000000000000000003847 192.0
LYD1_k127_4790571_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000005722 132.0
LYD1_k127_4790571_5 subunit of a heme lyase K02200 - - 0.0000000000000000664 88.0
LYD1_k127_4790571_6 - - - - 0.00000008523 64.0
LYD1_k127_4790571_7 - - - - 0.0000004365 57.0
LYD1_k127_4793067_0 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 332.0
LYD1_k127_4793067_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000003255 142.0
LYD1_k127_4793067_2 COG NOG14600 non supervised orthologous group - - - 0.000000000000000000000001561 102.0
LYD1_k127_4793067_3 NIF3 (NGG1p interacting factor 3) - - - 0.00000006486 58.0
LYD1_k127_4793067_5 COG NOG14600 non supervised orthologous group - - - 0.000003537 50.0
LYD1_k127_4809949_0 ATPase (AAA superfamily) K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 383.0
LYD1_k127_4809949_1 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000007143 213.0
LYD1_k127_4818127_0 PFAM Alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 348.0
LYD1_k127_4818127_1 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002169 254.0
LYD1_k127_4818127_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000001549 183.0
LYD1_k127_4818127_3 Glycine cleavage system K03567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000005835 138.0
LYD1_k127_4818127_4 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000007318 118.0
LYD1_k127_4818127_5 - - - - 0.00000002091 65.0
LYD1_k127_4830267_0 Pectate lyase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007279 370.0
LYD1_k127_4830267_1 Hydrolase of X-linked nucleoside diphosphate N terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 297.0
LYD1_k127_4830267_2 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000005113 209.0
LYD1_k127_4830267_3 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000006379 151.0
LYD1_k127_4830267_4 PFAM DinB family - - - 0.0000000001414 68.0
LYD1_k127_4834887_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 524.0
LYD1_k127_4834887_1 PFAM Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000002402 212.0
LYD1_k127_4834887_2 chlorophyll binding - - - 0.00000000000000000000000005353 119.0
LYD1_k127_4834887_3 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.000002332 52.0
LYD1_k127_484114_0 PFAM oxidoreductase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 360.0
LYD1_k127_484114_1 tRNA pseudouridine synthase activity K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000343 261.0
LYD1_k127_484114_2 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001498 254.0
LYD1_k127_484114_3 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000003897 224.0
LYD1_k127_484114_4 dehydrogenases and related proteins - - - 0.00000000000000000002211 96.0
LYD1_k127_484114_5 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000004122 87.0
LYD1_k127_4844097_0 Phosphohydrolase-associated domain K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 406.0
LYD1_k127_4844097_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006442 389.0
LYD1_k127_4844097_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000401 187.0
LYD1_k127_4844097_3 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000000312 127.0
LYD1_k127_4844097_4 Ribosomal L32p protein family K02911 - - 0.000000000000000000000001946 104.0
LYD1_k127_4844097_5 Tetratricopeptide repeat protein - - - 0.0000002099 59.0
LYD1_k127_4861444_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004582 282.0
LYD1_k127_4861444_1 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000008366 118.0
LYD1_k127_4861444_2 Bacterial regulatory protein, Fis family - - - 0.0000000005064 64.0
LYD1_k127_4862263_0 Glutamine amidotransferases class-II K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 604.0
LYD1_k127_4862263_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 556.0
LYD1_k127_4862263_10 Psort location Cytoplasmic, score 8.96 K01270 - - 0.0000000000000000000000000000000000005231 140.0
LYD1_k127_4862263_2 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 533.0
LYD1_k127_4862263_3 tRNA synthetases class I (W and Y) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 493.0
LYD1_k127_4862263_4 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004277 420.0
LYD1_k127_4862263_5 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 295.0
LYD1_k127_4862263_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001039 270.0
LYD1_k127_4862263_7 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000001044 256.0
LYD1_k127_4862263_8 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000001814 245.0
LYD1_k127_4862263_9 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000008939 178.0
LYD1_k127_4863912_0 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 316.0
LYD1_k127_4863912_1 metallopeptidase activity K06212,K06402 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016021,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0031224,GO:0031226,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000807 295.0
LYD1_k127_4863912_2 - - - - 0.000000000000000000000000000000000000000000000000000000000001606 216.0
LYD1_k127_4863912_3 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000002106 196.0
LYD1_k127_4863912_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000009672 78.0
LYD1_k127_4863912_5 Melibiase K07407 - 3.2.1.22 0.0000000005212 70.0
LYD1_k127_4864499_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008282 430.0
LYD1_k127_4864499_1 Alpha-L-fucosidase C-terminal domain K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000008899 171.0
LYD1_k127_4864499_2 Protein of unknown function (DUF971) - - - 0.000000000000000000002863 96.0
LYD1_k127_4876200_0 Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000651 472.0
LYD1_k127_4876200_1 ABC transporter K05847 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009475 280.0
LYD1_k127_4891680_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 7.819e-214 672.0
LYD1_k127_4891680_1 PFAM peptidase M14, carboxypeptidase A - - - 0.0000000000000000003727 102.0
LYD1_k127_4891680_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000009884 61.0
LYD1_k127_489718_0 Bacterial alpha-L-rhamnosidase C-terminal domain - - - 6.192e-231 729.0
LYD1_k127_4900342_0 Beta-L-arabinofuranosidase, GH127 - - - 1.95e-248 785.0
LYD1_k127_4900342_1 asparaginase K01424 - 3.5.1.1 0.00000000000000000000000000000000000000008333 153.0
LYD1_k127_4901863_0 Catalyzes the transfer of the amino group of L-glutamate to LysW -aminoadipate 6-semialdehyde, generating LysW -gamma-L- lysine K05830 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 456.0
LYD1_k127_4904450_1 Alpha-L-arabinofuranosidase C-terminal domain - - - 0.0000000000000000000000000000000000000002034 155.0
LYD1_k127_4906257_0 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 392.0
LYD1_k127_4906257_1 Protein of unknown function, DUF481 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 364.0
LYD1_k127_4906257_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000557 196.0
LYD1_k127_4906257_3 Peptidoglycan-binding domain 1 protein - - - 0.0000000000000000000000000000000000000000004642 164.0
LYD1_k127_4906257_4 Bacterial protein of unknown function (DUF937) - - - 0.0000000000000000000000000000000002115 136.0
LYD1_k127_4906257_5 BON domain - - - 0.00000000000001017 76.0
LYD1_k127_4906555_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1124.0
LYD1_k127_4906555_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 4.158e-233 725.0
LYD1_k127_4906555_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 537.0
LYD1_k127_4906555_3 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 370.0
LYD1_k127_4906555_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 316.0
LYD1_k127_4906555_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004071 289.0
LYD1_k127_4906555_6 Cytidylate kinase K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000007497 206.0
LYD1_k127_4906555_7 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000000000006192 196.0
LYD1_k127_4907560_0 phospho-N-acetylmuramoyl-pentapeptide-transferase activity K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 317.0
LYD1_k127_4907560_1 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001193 273.0
LYD1_k127_4907560_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000259 279.0
LYD1_k127_4907560_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000004052 219.0
LYD1_k127_4907560_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000001656 153.0
LYD1_k127_4907560_5 peptidyl-tyrosine sulfation - - - 0.00000000000000003765 85.0
LYD1_k127_4910112_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002515 256.0
LYD1_k127_4910112_1 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.0000000000000000000000000000000000000000007026 177.0
LYD1_k127_4910112_2 PFAM Phenazine biosynthesis PhzC PhzF protein - - - 0.0000004408 51.0
LYD1_k127_492299_0 Domain of unknown function (DUF374) K09778 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001849 276.0
LYD1_k127_492299_1 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001718 274.0
LYD1_k127_492299_2 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000002163 195.0
LYD1_k127_492299_3 - - - - 0.00000000000000000000002016 114.0
LYD1_k127_4924615_0 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008957 539.0
LYD1_k127_4924615_1 Aspartyl protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 404.0
LYD1_k127_4924615_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007799 300.0
LYD1_k127_4924615_3 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000002355 275.0
LYD1_k127_4924615_4 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.0000000000000000000000000000000000000002138 154.0
LYD1_k127_4924615_5 Forkhead associated domain - - - 0.0000000000000000000000000000007561 138.0
LYD1_k127_4929532_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 2.513e-214 681.0
LYD1_k127_4929532_1 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 393.0
LYD1_k127_4929532_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000001578 208.0
LYD1_k127_4929532_3 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000003816 196.0
LYD1_k127_4929532_4 YtxH-like protein - - - 0.000000000000008662 78.0
LYD1_k127_4941118_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 384.0
LYD1_k127_4941118_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000127 200.0
LYD1_k127_4941118_2 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000001271 196.0
LYD1_k127_4954207_0 dipeptidyl-peptidase activity K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003988 439.0
LYD1_k127_4954207_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000001101 152.0
LYD1_k127_4959174_0 DDE superfamily endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000009078 217.0
LYD1_k127_4959174_1 Transposase - - - 0.0000000000000000000000000000000000000000001256 164.0
LYD1_k127_4959174_2 Methyltransferase - - - 0.0006279 48.0
LYD1_k127_4963316_0 RNA binding K06959 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 432.0
LYD1_k127_4967396_0 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007328 288.0
LYD1_k127_4967396_1 formate dehydrogenase - - - 0.00001996 51.0
LYD1_k127_4977343_0 Peptidase family M50 K11749 GO:0008150,GO:0040007 - 0.0007019 51.0
LYD1_k127_4977372_0 Histidine kinase internal region K02478 - 2.7.13.3 0.00000000000000000000000000000000000000004598 172.0
LYD1_k127_4977372_1 myo-inosose-2 dehydratase activity - - - 0.00000000000000000000000000000002334 137.0
LYD1_k127_4977372_2 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000007828 128.0
LYD1_k127_498100_0 Trypsin - - - 0.0000000000002158 74.0
LYD1_k127_498100_1 PFAM Transposase IS200 like - - - 0.0000000002079 64.0
LYD1_k127_4981257_1 KR domain - - - 0.000000000000000000000005637 104.0
LYD1_k127_4981257_2 cell adhesion involved in biofilm formation - - - 0.0000000004965 73.0
LYD1_k127_498939_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.789e-240 757.0
LYD1_k127_498939_1 Permease, YjgP YjgQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 469.0
LYD1_k127_4990246_0 Radical SAM superfamily K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 501.0
LYD1_k127_4990246_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 417.0
LYD1_k127_4990246_2 PFAM Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 300.0
LYD1_k127_4990246_3 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000002716 240.0
LYD1_k127_4990246_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000000000000008106 159.0
LYD1_k127_4990246_5 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000001985 133.0
LYD1_k127_4990246_6 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000006811 132.0
LYD1_k127_4990246_7 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000296 125.0
LYD1_k127_4990246_8 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00006543 49.0
LYD1_k127_4992557_0 L-seryl-tRNASec selenium transferase activity K01042 - 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003228 359.0
LYD1_k127_4992557_1 L-rhamnose-proton symport protein (RhaT) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 346.0
LYD1_k127_4992557_2 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000001823 198.0
LYD1_k127_4992557_3 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000375 90.0
LYD1_k127_4993727_0 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 491.0
LYD1_k127_4993727_1 5,10-methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 367.0
LYD1_k127_4993727_10 PFAM Semialdehyde dehydrogenase K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000009626 201.0
LYD1_k127_4993727_11 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000005234 185.0
LYD1_k127_4993727_12 Protein of unknown function (DUF465) - - - 0.00000000007685 65.0
LYD1_k127_4993727_2 glucose sorbosone - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 391.0
LYD1_k127_4993727_3 Histidine kinase K02478 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008244 371.0
LYD1_k127_4993727_4 Two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 355.0
LYD1_k127_4993727_5 Alanine-glyoxylate amino-transferase K05825 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 323.0
LYD1_k127_4993727_6 Response regulator receiver K07705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003597 277.0
LYD1_k127_4993727_7 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000001297 233.0
LYD1_k127_4993727_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000006614 229.0
LYD1_k127_4993727_9 phosphatidylethanolamine metabolic process K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000006208 200.0
LYD1_k127_5008352_0 pfkB family carbohydrate kinase K00852,K00874 - 2.7.1.15,2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000004693 258.0
LYD1_k127_5008352_1 Amidohydrolase family K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000008281 211.0
LYD1_k127_5008352_2 PFAM Sugar isomerase (SIS) K00820,K02082 - 2.6.1.16 0.000000000000000000000000000003053 125.0
LYD1_k127_5020719_0 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 508.0
LYD1_k127_5020719_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.000009455 53.0
LYD1_k127_5025898_0 ABC transporter, transmembrane K18889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 607.0
LYD1_k127_5025898_1 ABC transporter, transmembrane K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009613 428.0
LYD1_k127_5025898_2 Insulinase (Peptidase family M16) K07263 - - 0.00000001414 59.0
LYD1_k127_5029218_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 465.0
LYD1_k127_5034269_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 467.0
LYD1_k127_5034269_1 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 437.0
LYD1_k127_5034269_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007425 314.0
LYD1_k127_5034269_3 Transcriptional regulator K02019 - - 0.000000000000000000000000000000004648 131.0
LYD1_k127_5037409_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 7.522e-235 741.0
LYD1_k127_5038258_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 8.374e-241 753.0
LYD1_k127_5038258_1 LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005314 317.0
LYD1_k127_5038258_2 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.00000000000000003113 85.0
LYD1_k127_5049990_0 thiolester hydrolase activity K03928 - 3.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 381.0
LYD1_k127_5049990_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000006974 145.0
LYD1_k127_5054842_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 446.0
LYD1_k127_5054842_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 317.0
LYD1_k127_5056342_0 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000828 491.0
LYD1_k127_5057870_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 9.373e-272 858.0
LYD1_k127_5057870_1 Aldo Keto reductase K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 455.0
LYD1_k127_5057870_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000005297 53.0
LYD1_k127_5058837_0 protocatechuate 3,4-dioxygenase activity K03333 - 1.1.3.6 0.00000000000000000000000000000000000000000000000000000000186 221.0
LYD1_k127_5061575_0 Uroporphyrinogen-III synthase HemD K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 522.0
LYD1_k127_5061575_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003038 274.0
LYD1_k127_5061575_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000004894 177.0
LYD1_k127_5061575_3 - - - - 0.0000000000000000000000000000000000000000000005194 181.0
LYD1_k127_5061575_4 TIGRFAM molybdenum cofactor synthesis domain - - - 0.00000000000000000000000000000000000000000003007 167.0
LYD1_k127_5061575_5 - - - - 0.0000000000000000000208 94.0
LYD1_k127_5066937_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 557.0
LYD1_k127_5066937_1 PFAM delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 458.0
LYD1_k127_5066937_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 402.0
LYD1_k127_5066937_3 PFAM Organic solvent tolerance protein K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001328 263.0
LYD1_k127_5069922_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 435.0
LYD1_k127_5069922_1 Belongs to the glycosyl hydrolase 2 family K01192 - 3.2.1.25 0.000001436 56.0
LYD1_k127_5074372_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 429.0
LYD1_k127_5074372_1 cheY-homologous receiver domain - - - 0.000000000009657 66.0
LYD1_k127_50848_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 336.0
LYD1_k127_50848_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003255 257.0
LYD1_k127_50848_2 PFAM aminotransferase, class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000005945 240.0
LYD1_k127_508531_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00394 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 426.0
LYD1_k127_5099479_0 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 484.0
LYD1_k127_5099479_1 converts alpha-aldose to the beta-anomer - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 470.0
LYD1_k127_5099479_2 spore germination - - - 0.00000000000000000000000000000000000000000000000000000000000000002208 235.0
LYD1_k127_5099479_3 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000006266 156.0
LYD1_k127_5099479_4 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016787,GO:0016817,GO:0016818,GO:0050896 3.6.1.7 0.0000000000000000001943 91.0
LYD1_k127_5100815_0 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 458.0
LYD1_k127_5100815_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000005832 196.0
LYD1_k127_5100815_2 photoreceptor activity K03406,K13924,K21009 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000003093 119.0
LYD1_k127_5100815_3 inositol 2-dehydrogenase activity - - - 0.0000000000001063 74.0
LYD1_k127_5105850_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007828 434.0
LYD1_k127_5105850_1 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 429.0
LYD1_k127_5105850_2 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 368.0
LYD1_k127_5105850_3 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0000000000000001793 90.0
LYD1_k127_5115091_0 Belongs to the glycosyl hydrolase 3 family K05349,K17641 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 586.0
LYD1_k127_5117356_0 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000004059 165.0
LYD1_k127_5117356_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000003652 130.0
LYD1_k127_5117356_3 - - - - 0.0000004664 58.0
LYD1_k127_5118062_0 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 310.0
LYD1_k127_5118062_1 Peptidase M16 domain protein K07263 - - 0.0000000000000000000000000000000000000000000001563 186.0
LYD1_k127_5118062_2 Prephenate dehydrogenase K00210 - 1.3.1.12 0.0000000000000000000000000000000000000000000008399 175.0
LYD1_k127_5118062_3 PFAM Roadblock LC7 family protein - - - 0.0000000000000000000000000000000000004945 141.0
LYD1_k127_5118062_4 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000001505 120.0
LYD1_k127_5118062_5 von Willebrand factor, type A - - - 0.000000000000005448 86.0
LYD1_k127_5118062_6 Tetratricopeptide repeat - - - 0.0003526 52.0
LYD1_k127_5132849_0 FAD binding domain K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 528.0
LYD1_k127_5132849_1 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 423.0
LYD1_k127_5132849_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 303.0
LYD1_k127_5132849_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000001649 93.0
LYD1_k127_5134709_0 radical SAM domain protein - - - 7.192e-228 716.0
LYD1_k127_5134709_1 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 484.0
LYD1_k127_5134709_2 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007605 461.0
LYD1_k127_5134709_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000005592 151.0
LYD1_k127_5134709_5 Methyltransferase domain protein - - - 0.00000000000000000000000002101 119.0
LYD1_k127_5135024_0 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 599.0
LYD1_k127_5135024_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 343.0
LYD1_k127_5135024_2 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 284.0
LYD1_k127_5135024_3 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000001874 248.0
LYD1_k127_5137030_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1082.0
LYD1_k127_5137030_1 MacB-like periplasmic core domain K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009564 353.0
LYD1_k127_5137030_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000003537 236.0
LYD1_k127_5137030_3 Surface antigen variable number K07277 - - 0.000000000000000000000000000000000000000009905 161.0
LYD1_k127_5137030_4 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000007132 147.0
LYD1_k127_5137030_5 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000009384 139.0
LYD1_k127_5153168_0 PFAM Xylose isomerase domain-containing protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 347.0
LYD1_k127_5153168_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001541 265.0
LYD1_k127_5153168_2 Glucose galactose transporter K02429 - - 0.00003383 49.0
LYD1_k127_5153402_0 hydrophobe amphiphile efflux-3 (HAE3) family K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 308.0
LYD1_k127_5156560_0 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006514 287.0
LYD1_k127_5156560_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000008717 235.0
LYD1_k127_5156560_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.0000000000000000000000000000000000000001948 156.0
LYD1_k127_5169345_0 C-terminal, D2-small domain, of ClpB protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 477.0
LYD1_k127_5169345_1 PFAM Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 396.0
LYD1_k127_5169345_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000003091 181.0
LYD1_k127_5172949_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648,K18003 - 2.3.1.180,2.3.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000478 415.0
LYD1_k127_5172949_2 PFAM Transposase IS200 like - - - 0.00002606 52.0
LYD1_k127_5178075_0 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008668 285.0
LYD1_k127_5178075_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000003904 201.0
LYD1_k127_5178075_2 MacB-like periplasmic core domain - - - 0.00000000000000000000000008708 108.0
LYD1_k127_5190819_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 2.827e-247 766.0
LYD1_k127_5190819_1 Bacterial protein of unknown function (DUF885) - - - 0.000000004402 59.0
LYD1_k127_5222441_0 SH3 domain - - - 0.000000000000000000000000000001825 135.0
LYD1_k127_5222441_1 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives K02343 - 2.7.7.7 0.000000000000000009085 84.0
LYD1_k127_5222441_2 -beta-galactosidase K12308 - 3.2.1.23 0.0000004478 63.0
LYD1_k127_5223919_0 Non-ribosomal peptide synthetase modules and related - - - 1.403e-252 795.0
LYD1_k127_5223919_1 Condensation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001855 238.0
LYD1_k127_5231001_0 SAF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008711 548.0
LYD1_k127_5231001_1 Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 417.0
LYD1_k127_5231001_2 aldo keto reductase K17744 - 1.1.1.316 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 384.0
LYD1_k127_5234809_0 Trehalose utilisation K09992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 402.0
LYD1_k127_5234809_1 family 32 K01193 - 3.2.1.26 0.00000000000000000000000000000002951 129.0
LYD1_k127_5234809_2 Belongs to the glycosyl hydrolase 32 family K01212,K03332 - 3.2.1.65,3.2.1.80 0.000000000000001327 79.0
LYD1_k127_5250397_0 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 448.0
LYD1_k127_5250397_1 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000001883 208.0
LYD1_k127_5251445_0 Predicted membrane protein (DUF2339) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 441.0
LYD1_k127_5251445_1 PFAM LmbE family protein K01463 - - 0.000000000000000005387 94.0
LYD1_k127_5251445_2 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.000000003116 64.0
LYD1_k127_5269753_0 4-phosphoerythronate dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001316 273.0
LYD1_k127_5269753_1 Domain of unknown function (DUF5107) - - - 0.000000000000000103 94.0
LYD1_k127_5269753_2 PD-(D/E)XK nuclease superfamily - - - 0.00008328 46.0
LYD1_k127_5269753_3 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000267 45.0
LYD1_k127_5274506_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 411.0
LYD1_k127_5274506_1 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000000000000000006054 148.0
LYD1_k127_5274506_2 Protein of unknown function (DUF456) K09793 - - 0.000000001175 63.0
LYD1_k127_5288177_1 Bacterial-like globin K06886 - - 0.000000000001151 68.0
LYD1_k127_5294031_0 PFAM Amidase - - - 0.00000000000000000000005145 100.0
LYD1_k127_5294031_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000003524 80.0
LYD1_k127_5294031_2 sequence-specific DNA binding K18830 - - 0.000000000000148 73.0
LYD1_k127_5303588_0 D-alanine [D-alanyl carrier protein] ligase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 366.0
LYD1_k127_5303588_1 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004286 276.0
LYD1_k127_5310939_0 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000002046 226.0
LYD1_k127_5310939_1 Domain of unknown function (DUF4337) - - - 0.00000000000000000000000000000006251 130.0
LYD1_k127_5310939_2 Cupin 2, conserved barrel domain protein K21700 - - 0.000000000000000000007822 96.0
LYD1_k127_5313800_0 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003624 314.0
LYD1_k127_5313800_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 317.0
LYD1_k127_5313800_2 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 306.0
LYD1_k127_5313800_3 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000001849 244.0
LYD1_k127_5313800_4 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000001382 204.0
LYD1_k127_5313800_5 ATP-dependent helicase K03579 - 3.6.4.13 0.000000000000000000004145 95.0
LYD1_k127_5314510_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 471.0
LYD1_k127_5314510_1 5'-nucleotidase - - - 0.0000000000000000000000000000000002085 145.0
LYD1_k127_5314510_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000001687 94.0
LYD1_k127_5314510_3 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives - - - 0.00001217 53.0
LYD1_k127_5318725_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 527.0
LYD1_k127_5318725_1 - - - - 0.000002056 54.0
LYD1_k127_532151_0 4-vinyl reductase, 4VR K07013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 288.0
LYD1_k127_532151_1 PFAM ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001736 271.0
LYD1_k127_5325965_0 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 331.0
LYD1_k127_5325965_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002037 271.0
LYD1_k127_5325965_2 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000005587 103.0
LYD1_k127_5325965_3 cheY-homologous receiver domain K03413 - - 0.000000000000000005032 87.0
LYD1_k127_5325965_4 - - - - 0.0000002742 57.0
LYD1_k127_5326659_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 394.0
LYD1_k127_5326659_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000005419 234.0
LYD1_k127_5326659_2 PFAM Protein kinase domain - - - 0.0001367 54.0
LYD1_k127_5332414_0 Domain of unknown function (DUF1998) K06877 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000463 586.0
LYD1_k127_5332414_1 RNase_H superfamily K07502 - - 0.00008039 50.0
LYD1_k127_5340081_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000008252 165.0
LYD1_k127_5340081_1 Rhodanese Homology Domain - - - 0.00004449 52.0
LYD1_k127_5340612_0 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000000000000000000000000003969 168.0
LYD1_k127_5340612_1 Hfq protein - - - 0.00000000000000000000000000002521 121.0
LYD1_k127_5340612_2 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.0002876 48.0
LYD1_k127_5348540_0 Domain of unknown function (DUF4921) K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 501.0
LYD1_k127_5348540_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 357.0
LYD1_k127_5348540_2 Uncharacterised protein family UPF0102 K07460 - - 0.000000000000000001282 91.0
LYD1_k127_536181_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388,K12527 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,1.97.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 549.0
LYD1_k127_536181_1 Polysaccharide lyase family 4, domain II - - - 0.00000000000000000000001061 103.0
LYD1_k127_5396285_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 618.0
LYD1_k127_5396285_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 396.0
LYD1_k127_5396285_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000008811 143.0
LYD1_k127_5396285_3 - - - - 0.0000000000000000000000000000003497 130.0
LYD1_k127_5397177_0 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003597 447.0
LYD1_k127_5397177_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000005429 174.0
LYD1_k127_5397177_2 Cytochrome c K03611 - - 0.0000000000000000000000000000000000000000001202 168.0
LYD1_k127_5398108_0 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000001552 173.0
LYD1_k127_5398108_1 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000009118 132.0
LYD1_k127_5398108_3 FecR protein - - - 0.000000003954 62.0
LYD1_k127_5398357_0 Oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008974 368.0
LYD1_k127_5398357_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000002212 272.0
LYD1_k127_5398357_2 reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.0000817 47.0
LYD1_k127_5398889_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 415.0
LYD1_k127_5398889_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 345.0
LYD1_k127_5398889_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000006803 208.0
LYD1_k127_5398889_3 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000001928 177.0
LYD1_k127_5398889_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000009788 160.0
LYD1_k127_5398889_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000007311 119.0
LYD1_k127_5398889_6 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000009332 102.0
LYD1_k127_5409348_0 PFAM Type II secretion system protein E K02652 - - 9.019e-254 792.0
LYD1_k127_5409348_1 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 334.0
LYD1_k127_5409348_2 outer membrane lipoprotein carrier protein LolA K03634 - - 0.0000000000000000000000000000000000004987 151.0
LYD1_k127_5409348_3 Pilus assembly protein K02662 - - 0.000000000000000003642 96.0
LYD1_k127_5410464_0 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.000000000000000000000000000000000000000000000000000000000000000000006049 241.0
LYD1_k127_5410464_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000001761 214.0
LYD1_k127_544664_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 1.042e-264 827.0
LYD1_k127_544664_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 7.417e-241 760.0
LYD1_k127_544664_2 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 472.0
LYD1_k127_544664_3 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006978 457.0
LYD1_k127_544664_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000003572 123.0
LYD1_k127_544664_5 CBS domain - - - 0.00000000000000000000000000004595 121.0
LYD1_k127_544664_6 TrbC/VIRB2 family K03197 - - 0.00000001312 58.0
LYD1_k127_544664_8 - - - - 0.0003162 49.0
LYD1_k127_5450266_0 pilus assembly protein PilW - - - 0.0000000008219 68.0
LYD1_k127_5450266_1 Pilus assembly protein PilX K02673 - - 0.00000006528 65.0
LYD1_k127_5450266_2 Type II transport protein GspH K08084 - - 0.0002327 51.0
LYD1_k127_5450266_3 type IV pilus modification protein PilV K02671,K02681 - - 0.0009685 48.0
LYD1_k127_5466090_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 8.354e-201 636.0
LYD1_k127_5466090_1 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 386.0
LYD1_k127_5466090_2 import. Responsible for energy coupling to the transport system K10441 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0006810,GO:0008144,GO:0008150,GO:0008643,GO:0015144,GO:0015145,GO:0015146,GO:0015399,GO:0015405,GO:0015407,GO:0015591,GO:0015608,GO:0015611,GO:0015749,GO:0015750,GO:0015752,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034219,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043211,GO:0043492,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 334.0
LYD1_k127_5466418_0 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 572.0
LYD1_k127_5466418_1 Pfam:DUF303 K05970 - 3.1.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 417.0
LYD1_k127_5466418_2 PFAM Methyltransferase type 11 K03892 - - 0.000000002064 63.0
LYD1_k127_5471513_0 Cytochrome c - - - 5.289e-216 687.0
LYD1_k127_5476947_0 dicarboxylic acid transport K02030,K11102 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007963 269.0
LYD1_k127_5476947_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001253 237.0
LYD1_k127_5476947_2 BON domain - - - 0.0000000000000000000000001195 112.0
LYD1_k127_5476947_3 Protein of unknown function (DUF3313) - - - 0.0000000000000000007396 96.0
LYD1_k127_54962_0 DNA polymerase type-B family K02336 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 467.0
LYD1_k127_54962_1 DNA polymerase type-B family K02336 - 2.7.7.7 0.0000000000000000000000000000000000000007011 151.0
LYD1_k127_549923_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 413.0
LYD1_k127_5507023_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000005773 260.0
LYD1_k127_5509124_0 mannonate dehydratase activity K01686 - 4.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 502.0
LYD1_k127_5509124_1 PFAM Thioesterase superfamily K02614 - - 0.00000000000000000000000000000000000000000000006011 174.0
LYD1_k127_5509124_2 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000003591 164.0
LYD1_k127_5509124_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000001438 86.0
LYD1_k127_5509124_4 Fibronectin type III-like domain K01207,K05349 - 3.2.1.21,3.2.1.52 0.0000000000007114 70.0
LYD1_k127_5513717_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006947 350.0
LYD1_k127_5513717_1 - - - - 0.00000000000000000000001347 113.0
LYD1_k127_5521611_0 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 375.0
LYD1_k127_5521611_1 Protein of unknown function (DUF1318) - - - 0.000000000000000000000000003705 114.0
LYD1_k127_552322_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000002257 123.0
LYD1_k127_552322_1 addiction module antidote protein, CC2985 family - - - 0.000000000001614 72.0
LYD1_k127_5529007_0 proteolysis K03665 - - 0.0000000000000000000000000004711 120.0
LYD1_k127_5529007_1 - - - - 0.0000000000000000005197 94.0
LYD1_k127_5529007_2 von Willebrand factor, type A - - - 0.00000002104 63.0
LYD1_k127_553323_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 6.56e-295 915.0
LYD1_k127_553323_1 Isocitrate/isopropylmalate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 598.0
LYD1_k127_553323_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 304.0
LYD1_k127_553323_3 curli production assembly transport component CsgG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007284 300.0
LYD1_k127_553323_4 ROK family - - - 0.00000000000000000000000000000000000000000000000000000006536 209.0
LYD1_k127_553323_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000003564 94.0
LYD1_k127_553323_6 lactoylglutathione lyase activity - - - 0.00000001305 58.0
LYD1_k127_553323_7 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000004463 52.0
LYD1_k127_5552145_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 417.0
LYD1_k127_5552145_1 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000001287 237.0
LYD1_k127_5552145_2 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000004908 107.0
LYD1_k127_5553404_0 thiamine diphosphate biosynthetic process K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 382.0
LYD1_k127_5553404_1 Belongs to the GSP D family K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004561 268.0
LYD1_k127_5553404_2 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000000000000000000000000000003626 189.0
LYD1_k127_5553404_3 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000004214 149.0
LYD1_k127_5561611_0 FRG - - - 0.0000000000000000000000000000000000000000000000000000000000000000001918 239.0
LYD1_k127_5561611_1 Belongs to the glycosyl hydrolase 31 family K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000005226 178.0
LYD1_k127_5561611_2 PFAM nuclease (SNase domain protein) - - - 0.000000000000000000008563 94.0
LYD1_k127_5561611_3 Helix-hairpin-helix motif - - - 0.0000000000000006047 81.0
LYD1_k127_5561611_4 PFAM peptidase M6, immune inhibitor A K09607 - - 0.000000009909 60.0
LYD1_k127_556591_0 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 436.0
LYD1_k127_556591_1 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003545 361.0
LYD1_k127_556591_2 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004186 274.0
LYD1_k127_556591_3 Domain of Unknown function (DUF542) K07322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001241 255.0
LYD1_k127_556591_4 L-rhamnose mutarotase K03534 - 5.1.3.32 0.00000000000000000000000000000000000000000000001165 173.0
LYD1_k127_556591_5 amine oxidase - - - 0.00000000000000000000004374 102.0
LYD1_k127_557440_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 395.0
LYD1_k127_557440_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000001577 150.0
LYD1_k127_557440_2 Outer membrane protein (OmpH-like) K06142 - - 0.000000000000000000000000000006914 127.0
LYD1_k127_5578409_0 PFAM natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009093 487.0
LYD1_k127_5578409_1 Beta-eliminating lyase K01667 - 4.1.99.1 0.0000000000000005877 80.0
LYD1_k127_5578409_2 Divalent cation transporter - - - 0.00000003474 55.0
LYD1_k127_5579815_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 469.0
LYD1_k127_5579815_1 UvrD/REP helicase N-terminal domain K03582,K16898 - 3.1.11.5,3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 300.0
LYD1_k127_5588189_0 Non-ribosomal peptide synthetase modules and related - - - 1.135e-217 700.0
LYD1_k127_5588189_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 299.0
LYD1_k127_5589501_0 protein transport across the cell outer membrane K02453,K03219 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009188 442.0
LYD1_k127_5589501_1 General secretion pathway protein M K02462 - - 0.000003538 57.0
LYD1_k127_5589501_3 PFAM Fimbrial assembly family protein K02662,K02663,K12289 - - 0.0001167 55.0
LYD1_k127_5589501_4 Type II secretion system (T2SS), protein K K02460 - - 0.0008329 48.0
LYD1_k127_5595391_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1129.0
LYD1_k127_5595391_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008591 274.0
LYD1_k127_5595391_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001332 250.0
LYD1_k127_5595391_3 PFAM von Willebrand factor type A - - - 0.000000000000000000000000000000000000000000000000000000000000001146 228.0
LYD1_k127_5595391_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000001001 132.0
LYD1_k127_5611736_0 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000002789 193.0
LYD1_k127_5611736_1 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.00000000000002905 78.0
LYD1_k127_5654333_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 523.0
LYD1_k127_5654333_1 proline dipeptidase activity K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006026 284.0
LYD1_k127_5654333_2 protein-disulfide reductase activity K04084 - 1.8.1.8 0.0007648 49.0
LYD1_k127_566566_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005361 327.0
LYD1_k127_566566_1 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001257 248.0
LYD1_k127_566566_2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.00000000000000000006548 91.0
LYD1_k127_5669296_0 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000003404 218.0
LYD1_k127_5669296_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.0000000000000001314 82.0
LYD1_k127_5669296_2 converts alpha-aldose to the beta-anomer - - - 0.00000006724 56.0
LYD1_k127_5669296_3 converts alpha-aldose to the beta-anomer - - - 0.000001625 53.0
LYD1_k127_5669531_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 499.0
LYD1_k127_5679207_0 Peptidase S9, prolyl oligopeptidase active site domain protein K01322 - 3.4.21.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 554.0
LYD1_k127_5679207_1 Periplasmic binding protein domain K10439 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 369.0
LYD1_k127_5679207_2 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 302.0
LYD1_k127_5679207_3 Transglycosylase associated protein - - - 0.000000000000000000000000000004225 121.0
LYD1_k127_5679207_4 Protein of unknown function (DUF3108) - - - 0.00000008698 55.0
LYD1_k127_5688744_0 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008311 354.0
LYD1_k127_5688744_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000005395 226.0
LYD1_k127_5705292_0 ABC transporter K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 370.0
LYD1_k127_5705292_1 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000000000004792 217.0
LYD1_k127_5705292_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000002822 134.0
LYD1_k127_5710624_0 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 475.0
LYD1_k127_5710624_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 336.0
LYD1_k127_5710624_2 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.000000000000000000000000000000000000000000000000000000000000001515 229.0
LYD1_k127_5710624_3 pyrroloquinoline quinone binding - - - 0.0000000000000005779 83.0
LYD1_k127_5710624_4 Protein of unknown function (DUF3341) - - - 0.00000001238 63.0
LYD1_k127_5719538_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 538.0
LYD1_k127_5719538_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 302.0
LYD1_k127_5719632_0 transport - - - 0.000000000000000000000000000000000000000000000000008314 199.0
LYD1_k127_5719632_1 Endonuclease I - - - 0.0000008978 54.0
LYD1_k127_5719682_0 Male sterility protein K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 322.0
LYD1_k127_5719682_1 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009405 266.0
LYD1_k127_574140_0 Clostripain family - - - 0.00000000000000000000000000000000000000000000008498 172.0
LYD1_k127_574140_1 cellular response to DNA damage stimulus K07340 - - 0.0000000000000000000000000000000000000000000000921 173.0
LYD1_k127_574140_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000001375 160.0
LYD1_k127_5748772_0 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000007899 192.0
LYD1_k127_5748772_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000007132 147.0
LYD1_k127_5748772_2 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000234 69.0
LYD1_k127_5748772_3 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.000000002673 68.0
LYD1_k127_5748772_4 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000001333 49.0
LYD1_k127_5754341_0 Domain of unknown function (DUF4445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008411 429.0
LYD1_k127_5754341_1 Uroporphyrinogen decarboxylase (URO-D) K01599,K14080 - 2.1.1.246,4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 307.0
LYD1_k127_5754341_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001722 285.0
LYD1_k127_5754341_3 Homocysteine S-methyltransferase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000001562 214.0
LYD1_k127_5754341_4 Protein of unknown function (DUF1638) - - - 0.0000000000000000000000000000000000000000000000007574 184.0
LYD1_k127_5754341_5 B12 binding domain - - - 0.0000000000000000000000000000006155 123.0
LYD1_k127_5760786_0 cysteine protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 332.0
LYD1_k127_5760786_1 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000029 138.0
LYD1_k127_5761495_0 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 345.0
LYD1_k127_5761495_1 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000005812 186.0
LYD1_k127_5761495_2 Methyltransferase domain - - - 0.0000000000000000001219 93.0
LYD1_k127_5761495_3 Biotin-lipoyl like - - - 0.000000002863 58.0
LYD1_k127_5762428_0 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 378.0
LYD1_k127_5762428_1 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000001618 183.0
LYD1_k127_5762428_2 Carbohydrate kinase, FGGY family protein K00854 - 2.7.1.17 0.000000000000000005895 87.0
LYD1_k127_5769584_0 - - - - 0.000000000000002055 78.0
LYD1_k127_5783118_0 TIGRFAM iron-sulfur cluster binding protein K18929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007287 379.0
LYD1_k127_5783118_1 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000011 267.0
LYD1_k127_5783118_2 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000002465 108.0
LYD1_k127_5792889_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008115 481.0
LYD1_k127_5792889_1 PFAM Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 304.0
LYD1_k127_5792889_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000003941 243.0
LYD1_k127_5792889_3 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000001055 193.0
LYD1_k127_5792889_4 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000001161 96.0
LYD1_k127_5793583_0 Chalcone and stilbene synthases, C-terminal domain K16167 - - 0.000000000000000000000000000000000000000000000000000000000000000586 232.0
LYD1_k127_5793583_1 Hydantoinase/oxoprolinase N-terminal region - - - 0.0000000000000000000000000000000000000000000000000008215 186.0
LYD1_k127_5793583_2 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000002944 171.0
LYD1_k127_5793583_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000002451 147.0
LYD1_k127_5810790_0 oxidoreductase - - - 0.000000000000000000000000000000000000001441 154.0
LYD1_k127_5810790_1 Doxx family K15977 - - 0.00000000000000000000000000000002034 131.0
LYD1_k127_5810790_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000003239 107.0
LYD1_k127_583512_0 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 438.0
LYD1_k127_583512_1 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000003058 192.0
LYD1_k127_583666_0 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 297.0
LYD1_k127_583666_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00265,K03616,K17723 - 1.3.1.1,1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 286.0
LYD1_k127_583666_2 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000002487 207.0
LYD1_k127_5844340_0 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 501.0
LYD1_k127_5844340_1 Dehydrogenase E1 component K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 398.0
LYD1_k127_5844340_2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 367.0
LYD1_k127_5844340_3 gtp cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000294 248.0
LYD1_k127_5844340_4 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000009037 246.0
LYD1_k127_5844340_5 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000002979 223.0
LYD1_k127_5844340_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000004893 134.0
LYD1_k127_5844340_7 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0001871,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008150,GO:0009986,GO:0017076,GO:0030234,GO:0030246,GO:0030247,GO:0030554,GO:0036094,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363,GO:2001065 - 0.000000000000000000000000000001109 129.0
LYD1_k127_5850643_0 Oxidoreductase family, NAD-binding Rossmann fold K10219 - 1.1.1.312 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008725 364.0
LYD1_k127_5850643_1 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000000000000000000007738 163.0
LYD1_k127_5850643_2 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000703 168.0
LYD1_k127_5853079_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 512.0
LYD1_k127_5853079_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000006704 151.0
LYD1_k127_5854944_0 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005666 449.0
LYD1_k127_5854944_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 289.0
LYD1_k127_5854944_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001622 243.0
LYD1_k127_5864612_0 acetaldehyde dehydrogenase (acetylating) K00132,K13922,K15515,K18119 - 1.2.1.10,1.2.1.76,1.2.1.81,1.2.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 311.0
LYD1_k127_5864612_1 Helix-turn-helix domain K15539 - - 0.0000000000000000004298 98.0
LYD1_k127_5864612_2 - - - - 0.0000008848 60.0
LYD1_k127_586508_0 radical SAM domain protein - - - 2.839e-286 891.0
LYD1_k127_586508_1 SnoaL-like domain - - - 0.000000000000000000000000000000002465 132.0
LYD1_k127_5867455_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902 561.0
LYD1_k127_5867455_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 481.0
LYD1_k127_5868597_0 Lipase maturation factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003595 259.0
LYD1_k127_5868597_1 MgtC family K07507 - - 0.000000000000000000000000000000004907 139.0
LYD1_k127_5874786_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 337.0
LYD1_k127_5874786_1 Membrane - - - 0.00000000000000000000000000000000000000001853 163.0
LYD1_k127_5875061_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07788 - - 6.122e-207 655.0
LYD1_k127_5875061_1 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007935 366.0
LYD1_k127_5875061_2 Uroporphyrinogen III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000811 278.0
LYD1_k127_5879531_0 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 533.0
LYD1_k127_5891702_0 regulator, PATAN and FRGAF domain-containing - - - 0.0000000000000000000000000000000000009211 153.0
LYD1_k127_5894842_0 DDE superfamily endonuclease - - - 0.0000000000000000000000000000000000000001308 168.0
LYD1_k127_5925317_0 conserved protein (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 320.0
LYD1_k127_5925317_1 Pyridoxal phosphate biosynthetic protein PdxA K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 319.0
LYD1_k127_5925317_2 PFAM type III effector Hrp-dependent outers K22129 - 2.7.1.219,2.7.1.220 0.000000000000000004604 91.0
LYD1_k127_593614_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009737 463.0
LYD1_k127_593614_1 PFAM PfkB domain protein K00847,K00852 - 2.7.1.15,2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000001562 250.0
LYD1_k127_593614_2 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000004051 106.0
LYD1_k127_593614_3 PA domain - - - 0.000000000000000001362 88.0
LYD1_k127_5938212_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000566 96.0
LYD1_k127_5945327_0 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 329.0
LYD1_k127_5945327_1 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007774 310.0
LYD1_k127_5945327_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000008456 151.0
LYD1_k127_5945327_3 - - - - 0.000003752 49.0
LYD1_k127_595840_0 Peptidase M16 - - - 0.0 1064.0
LYD1_k127_597225_0 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000009204 166.0
LYD1_k127_597225_1 response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 - 2.7.7.65 0.000000000002293 77.0
LYD1_k127_5977384_0 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004468 283.0
LYD1_k127_5977384_1 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000001875 240.0
LYD1_k127_5977384_2 extracellular polysaccharide biosynthetic process K00568,K03561,K07011,K20444 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000538 218.0
LYD1_k127_5979738_0 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 522.0
LYD1_k127_5979738_1 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000007145 106.0
LYD1_k127_5987638_0 AcrB/AcrD/AcrF family K03296 - - 4.306e-194 614.0
LYD1_k127_5987638_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 346.0
LYD1_k127_5987638_2 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000003487 168.0
LYD1_k127_5989308_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000001175 209.0
LYD1_k127_5989308_1 RNA polymerase sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000006375 187.0
LYD1_k127_5989308_2 Outer membrane efflux protein - - - 0.0000000000000000000000000879 119.0
LYD1_k127_5989308_3 Putative zinc-finger - - - 0.000000000001063 71.0
LYD1_k127_5991198_0 signal transduction histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000001041 185.0
LYD1_k127_5997852_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 319.0
LYD1_k127_5997852_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 310.0
LYD1_k127_5997852_2 Protein of unknown function (DUF1009) K09949 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001245 256.0
LYD1_k127_5997852_3 TonB C terminal - - - 0.00000000000000000000008209 110.0
LYD1_k127_5997852_4 positive regulation of translation, ncRNA-mediated K03666 GO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0017148,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030423,GO:0031047,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032270,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0035194,GO:0040029,GO:0040033,GO:0043170,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045974,GO:0045975,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:2000112,GO:2000113 - 0.00000000000000000000134 94.0
LYD1_k127_6004665_0 SurA N-terminal domain K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000007439 224.0
LYD1_k127_6004665_1 PFAM FecR protein - - - 0.000000000000000008728 91.0
LYD1_k127_6009867_0 Aminotransferase class-III - - - 7.113e-198 626.0
LYD1_k127_6009867_1 Tetratricopeptide repeat - - - 0.000000000000000000000000001021 116.0
LYD1_k127_6018883_0 Mechanosensitive ion channel K22044 - - 0.0000000000000000000000000000000000000000000000000000000000000006811 229.0
LYD1_k127_6018883_1 N-acetylmuramoyl-L-alanine amidase - - - 0.00000000000000000000000000000000000000002856 159.0
LYD1_k127_6018883_2 Ethanolamine utilisation protein EutQ K04030 - - 0.0002547 45.0
LYD1_k127_6023474_0 xyloglucan:xyloglucosyl transferase activity - - - 4.279e-220 712.0
LYD1_k127_6026556_0 COG NOG04001 non supervised orthologous group K15923 - 3.2.1.51 2.628e-278 875.0
LYD1_k127_6026556_1 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 481.0
LYD1_k127_6026556_2 - - - - 0.000000000000000000000000000000000000000000006704 170.0
LYD1_k127_602936_0 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000006292 181.0
LYD1_k127_602936_1 ABC-type uncharacterized transport system K01992 - - 0.0000000000000000000000000002549 119.0
LYD1_k127_602936_2 Trm112p-like protein K09791 - - 0.00000000000000000005934 90.0
LYD1_k127_602936_3 Domain of unknown function (DUF4340) - - - 0.00000000000004298 85.0
LYD1_k127_602936_4 phosphoserine phosphatase activity - - - 0.000004674 60.0
LYD1_k127_603586_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008111 432.0
LYD1_k127_603586_1 Domain of unknown function (DUF4388) - - - 0.00000006473 66.0
LYD1_k127_603586_2 AAA ATPase domain - - - 0.0000001226 54.0
LYD1_k127_6048086_0 Aldolase/RraA K10218 - 4.1.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009868 329.0
LYD1_k127_6048086_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000002795 209.0
LYD1_k127_6048086_2 guanylate kinase activity - - - 0.0000000000000000000000000000000000000000005887 160.0
LYD1_k127_6048086_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00003049 54.0
LYD1_k127_6056489_0 PFAM Glycoside hydrolase family 42 domain protein K12308 - 3.2.1.23 0.000000000000000000000000000000000000000000000000000000001008 213.0
LYD1_k127_6071027_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006899 371.0
LYD1_k127_6071027_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000001624 177.0
LYD1_k127_6073444_0 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000003617 116.0
LYD1_k127_6073444_1 - - - - 0.00000000000000001625 93.0
LYD1_k127_6073444_2 Putative adhesin - - - 0.00000000001041 77.0
LYD1_k127_6073444_3 Putative zinc-finger K03088 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000001632 75.0
LYD1_k127_6073444_4 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000004769 67.0
LYD1_k127_6079366_0 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000276 272.0
LYD1_k127_6079366_1 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.000000000000000002056 89.0
LYD1_k127_6079366_2 Bacterial dnaA protein helix-turn-helix K07491 - - 0.000001866 52.0
LYD1_k127_6080837_0 PFAM Radical SAM K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 406.0
LYD1_k127_6080837_1 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000009417 216.0
LYD1_k127_6091021_0 GTPase subunit of restriction endonuclease K07452 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003924,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0015666,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901575 - 0.000000000000008112 78.0
LYD1_k127_6095567_0 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 445.0
LYD1_k127_6095567_1 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000000000000000000000003309 202.0
LYD1_k127_6095567_2 chaperone-mediated protein folding K08309 - - 0.0000000000000000000000000000008398 136.0
LYD1_k127_6095567_3 Protein of unknown function (DUF559) - - - 0.00000000000000000000000000001031 120.0
LYD1_k127_6095567_4 arylsulfatase activity - - - 0.00000000182 64.0
LYD1_k127_609643_0 signal peptide processing K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000005213 242.0
LYD1_k127_609643_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000009928 199.0
LYD1_k127_609643_2 methylated-DNA-[protein]-cysteine S-methyltransferase activity K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000003581 171.0
LYD1_k127_609643_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000002358 166.0
LYD1_k127_609643_4 - - - - 0.000008485 55.0
LYD1_k127_6099602_0 OPT oligopeptide transporter protein - - - 1.792e-269 839.0
LYD1_k127_6104364_0 Pfam:DUF1237 K09704 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 603.0
LYD1_k127_6104364_1 mannitol 2-dehydrogenase activity K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 589.0
LYD1_k127_6104364_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 360.0
LYD1_k127_6104364_3 TRAP transporter T-component - - - 0.00000000000000000000000000000000000003398 146.0
LYD1_k127_6104364_4 zinc metalloprotease K11749 - - 0.0000000000000000000000000000009036 125.0
LYD1_k127_6107551_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 549.0
LYD1_k127_6107551_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000002215 216.0
LYD1_k127_6107551_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000009973 150.0
LYD1_k127_6107551_3 Ribosomal protein L35 K02916 - - 0.000000000000000004696 85.0
LYD1_k127_6113552_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 486.0
LYD1_k127_6113552_1 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002354 473.0
LYD1_k127_6113552_2 PFAM Biotin lipoate A B protein ligase family K03800 - 6.3.1.20 0.0000000000000000000000000000000000000000000006317 176.0
LYD1_k127_6117813_0 sequence-specific DNA binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000004141 234.0
LYD1_k127_6117813_1 Membrane protein implicated in regulation of membrane protease activity - - - 0.000000000000000000000000000000000000000000000000000000000000001253 226.0
LYD1_k127_6117813_2 Flotillin K07192 - - 0.00000000000000000000009435 99.0
LYD1_k127_6124229_0 undecaprenyl-phosphate glucose phosphotransferase activity K03606,K20997 - - 0.00000000000000000000000000000000000000000000000000000000000000335 231.0
LYD1_k127_6124229_1 CobQ CobB MinD ParA nucleotide binding domain - - - 0.00000000005466 74.0
LYD1_k127_6134897_0 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 516.0
LYD1_k127_6134897_1 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 293.0
LYD1_k127_6134897_2 Disulphide isomerase - - - 0.000000000000000000000000000000000000000000002745 168.0
LYD1_k127_6134897_3 EVE domain - - - 0.00000000000000000000000000000000000000000006735 164.0
LYD1_k127_6134897_4 ATP-dependent Clp protease adaptor protein ClpS K06891 - - 0.0000000000000000000000000000000002458 134.0
LYD1_k127_6137810_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001076 274.0
LYD1_k127_6137810_1 Domain of unknown function (DUF4136) - - - 0.000000000000000000000008777 108.0
LYD1_k127_6137810_2 - - - - 0.00000000000000000001523 97.0
LYD1_k127_6137810_3 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.00000000000002598 78.0
LYD1_k127_6150307_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 443.0
LYD1_k127_6150307_1 peroxiredoxin activity K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000006029 219.0
LYD1_k127_6150307_2 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18589 - 1.5.1.3 0.00000000000000000000000000000000000000000000000000000002782 201.0
LYD1_k127_6150307_3 Belongs to the 'phage' integrase family - - - 0.000000000000005339 76.0
LYD1_k127_6154636_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 347.0
LYD1_k127_6154636_1 PFAM SMP-30 Gluconolaconase K01053 - 3.1.1.17 0.000000000000002461 76.0
LYD1_k127_6154636_2 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000002586 66.0
LYD1_k127_6156674_0 AAA domain, putative AbiEii toxin, Type IV TA system K02006 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 289.0
LYD1_k127_6156674_1 Cobalt transport protein K02008 - - 0.000000000000000000000000000000000000000000000000000000001408 210.0
LYD1_k127_6156674_2 transcriptional regulator K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000008976 177.0
LYD1_k127_6158079_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 5.323e-195 647.0
LYD1_k127_6158079_1 Belongs to the purine pyrimidine phosphoribosyltransferase family. PyrR subfamily K02825 - 2.4.2.9 0.00000000000000000000000000000000000002711 148.0
LYD1_k127_616952_0 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 600.0
LYD1_k127_616952_1 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.00000000000000000000000000000000007299 136.0
LYD1_k127_6171501_0 NAD binding K00333,K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 542.0
LYD1_k127_6171501_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337,K05572 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 400.0
LYD1_k127_6171501_2 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 322.0
LYD1_k127_6171501_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003251 282.0
LYD1_k127_6171501_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000005397 261.0
LYD1_k127_6171501_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.000000000000000000000000000000000000000000003513 168.0
LYD1_k127_6171501_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000001237 168.0
LYD1_k127_6171501_7 NADH dehydrogenase (ubiquinone) activity K00330,K05574 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000000000002075 153.0
LYD1_k127_6171501_8 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.00000000000008366 75.0
LYD1_k127_6181251_0 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000576 543.0
LYD1_k127_6181251_1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000000000000000000009043 136.0
LYD1_k127_6181251_2 Appr-1'-p processing enzyme - - - 0.00000000000000000003039 93.0
LYD1_k127_6181251_3 Appr-1'-p processing enzyme - - - 0.0000000003234 61.0
LYD1_k127_6191596_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 3.622e-235 753.0
LYD1_k127_6191596_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000177 246.0
LYD1_k127_6191596_2 ergosterol biosynthetic process K02291,K21679 - 2.5.1.32,2.5.1.99,4.2.3.156 0.00000000000000000000000000006222 121.0
LYD1_k127_6191596_3 iron ion homeostasis - - - 0.00007518 53.0
LYD1_k127_6197531_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1070.0
LYD1_k127_6197531_1 acr, cog1993 K09137 - - 0.000000000000000000000000000000000000009664 150.0
LYD1_k127_6197531_2 SNARE associated Golgi protein - - - 0.000000000000000000000000000001406 136.0
LYD1_k127_6197531_3 BON domain - - - 0.000000000000000000000001656 114.0
LYD1_k127_6204796_0 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003559 451.0
LYD1_k127_6204796_1 Male sterility protein K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 357.0
LYD1_k127_6204796_2 Belongs to the RtcB family K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 297.0
LYD1_k127_6204796_3 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000004228 223.0
LYD1_k127_6204796_4 - - - - 0.0000000001011 66.0
LYD1_k127_6204796_5 - - - - 0.0001659 51.0
LYD1_k127_6225820_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000005015 209.0
LYD1_k127_6225820_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000002753 52.0
LYD1_k127_6229357_0 Phage integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 428.0
LYD1_k127_6229357_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.00000000000000000000000000000000001055 140.0
LYD1_k127_6233234_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 461.0
LYD1_k127_6233234_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 311.0
LYD1_k127_6233234_2 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000005206 49.0
LYD1_k127_623449_0 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 616.0
LYD1_k127_623449_1 nitrogen compound transport K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 357.0
LYD1_k127_623449_2 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001819 231.0
LYD1_k127_623449_3 ABC transporter permease K02034 - - 0.000000000000000000000000000000002594 136.0
LYD1_k127_623449_4 Bacterial regulatory protein, Fis family K02584 - - 0.000004855 57.0
LYD1_k127_623839_0 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.000000000000000000000000000000000000001195 164.0
LYD1_k127_623839_1 - - - - 0.0000000000000000000001377 110.0
LYD1_k127_6239607_0 Xylose isomerase-like TIM barrel - - - 0.00000000094 62.0
LYD1_k127_6239607_1 PFAM Tetratricopeptide repeat - - - 0.0000007332 61.0
LYD1_k127_6243098_0 Beta-lactamase superfamily domain - - - 0.00000000000000001316 91.0
LYD1_k127_6243098_1 PFAM AsmA family K07289 - - 0.00000000000005755 84.0
LYD1_k127_625895_0 Belongs to the glycosyl hydrolase 3 family K05349,K17641 - 3.2.1.21 0.00000000000000000000000000000000000000000000001935 179.0
LYD1_k127_6268085_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1064.0
LYD1_k127_6268085_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 472.0
LYD1_k127_6268085_2 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0016491,GO:0016667,GO:0016672,GO:0016675,GO:0019538,GO:0030091,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0043170,GO:0043546,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0048037,GO:0050662,GO:0050896,GO:0055114,GO:0071704,GO:0097159,GO:1901363,GO:1901530,GO:1901564,GO:1901700 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 434.0
LYD1_k127_6268085_3 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003854 275.0
LYD1_k127_6276694_0 Putative collagen-binding domain of a collagenase - - - 0.000000000000000000000000000000000000000000000000000000000000008665 233.0
LYD1_k127_6276694_1 Uroporphyrinogen decarboxylase (URO-D) - - - 0.0000000000000000000000000000000000005349 153.0
LYD1_k127_6276694_2 EcoEI R protein C-terminal K01153 - 3.1.21.3 0.0003039 45.0
LYD1_k127_6284641_0 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 406.0
LYD1_k127_6284641_1 Belongs to the glycosyl hydrolase 31 family K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007023 398.0
LYD1_k127_6286193_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 357.0
LYD1_k127_6286193_1 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001031 276.0
LYD1_k127_6286193_2 Orotidine 5'-phosphate decarboxylase / HUMPS family K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000003591 226.0
LYD1_k127_6286193_3 - - - - 0.000000000000000000000001019 112.0
LYD1_k127_6287742_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000009305 104.0
LYD1_k127_6289540_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 2.798e-210 672.0
LYD1_k127_6289540_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041 376.0
LYD1_k127_6289540_2 - - - - 0.0000000000000000000000306 104.0
LYD1_k127_6289540_3 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.0000000000000000000003138 98.0
LYD1_k127_6289540_4 Domain of unknown function (DUF4203) - - - 0.000000000000000000002287 101.0
LYD1_k127_6291101_0 COG1879 ABC-type sugar transport system, periplasmic component K10439 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 321.0
LYD1_k127_6291101_1 Protein of unknown function (DUF421) - - - 0.00000000000000000000000000000000000000000000000000000000000002488 220.0
LYD1_k127_6323742_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 546.0
LYD1_k127_6323742_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000003223 186.0
LYD1_k127_6323742_2 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00000000000000000000000000000000000000000001382 166.0
LYD1_k127_6323742_3 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00000000000000000000001217 103.0
LYD1_k127_6324928_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 393.0
LYD1_k127_6324928_1 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 293.0
LYD1_k127_6327210_0 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000607 291.0
LYD1_k127_6327210_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009508 259.0
LYD1_k127_6327210_2 Transposase K07491 - - 0.00000000000000000000000000000000000000001407 158.0
LYD1_k127_6337608_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004807 275.0
LYD1_k127_6337608_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000001835 201.0
LYD1_k127_6340751_0 PFAM Stage II sporulation protein E (SpoIIE) - - - 0.0000000000000000000000000000000000000000000000000000000000002053 228.0
LYD1_k127_6340751_1 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000003486 173.0
LYD1_k127_6340751_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000001175 149.0
LYD1_k127_6341103_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 433.0
LYD1_k127_6341103_1 Cytochrome c554 and c-prime K03620 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 347.0
LYD1_k127_6341103_2 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000000000000000000000000000004076 174.0
LYD1_k127_6341103_3 denitrification pathway - - - 0.00000000000000000000000000000000006386 149.0
LYD1_k127_6341103_4 Non-ribosomal peptide synthetase modules and related - - - 0.00000000000000000005439 93.0
LYD1_k127_6365215_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1135.0
LYD1_k127_6365215_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 356.0
LYD1_k127_6365215_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000001553 182.0
LYD1_k127_6369319_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008095 616.0
LYD1_k127_6369319_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 375.0
LYD1_k127_6369319_2 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 GO:0000726,GO:0003674,GO:0003824,GO:0003953,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006464,GO:0006471,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016787,GO:0016798,GO:0016799,GO:0019213,GO:0019538,GO:0030312,GO:0033554,GO:0033558,GO:0034641,GO:0034979,GO:0035601,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070213,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071944,GO:0090304,GO:0098732,GO:0104004,GO:0140096,GO:1901360,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000001776 211.0
LYD1_k127_6370022_0 ig-like, plexins, transcription factors - - - 0.00000000000000000893 98.0
LYD1_k127_6397227_0 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002714 368.0
LYD1_k127_6397227_1 response regulator K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005217 347.0
LYD1_k127_6399285_0 PFAM Uncharacterised BCR, COG1649 - - - 1.229e-301 942.0
LYD1_k127_6399285_1 PFAM Uncharacterised BCR, COG1649 - - - 1.248e-224 715.0
LYD1_k127_6399285_2 Tetratricopeptide repeat - - - 0.0007236 47.0
LYD1_k127_6427139_0 beta-galactosidase activity - - - 3.471e-223 700.0
LYD1_k127_6427139_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009 486.0
LYD1_k127_6427139_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.0000000000000000000000000000000000000003257 156.0
LYD1_k127_6427139_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000007552 126.0
LYD1_k127_6427139_4 - - - - 0.0000000000000859 74.0
LYD1_k127_6429015_0 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000915 286.0
LYD1_k127_6429015_1 Peptidase family M20/M25/M40 K01438,K05831 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000132 188.0
LYD1_k127_6429237_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009383 578.0
LYD1_k127_6429237_1 major facilitator K08191 - - 0.0000000000000000000000000000000000001161 149.0
LYD1_k127_6429237_2 iron ion homeostasis - - - 0.0000000000000000005563 99.0
LYD1_k127_6429237_3 Phosphorylates 6-deoxy-6-sulfo-D-fructose (SF) to 6- deoxy-6-sulfo-D-fructose 1-phosphate (SFP) K00846,K18478 - 2.7.1.184,2.7.1.3 0.00000000000002704 76.0
LYD1_k127_6429237_4 Cytochrome c, class I - - - 0.00002225 51.0
LYD1_k127_6429288_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 460.0
LYD1_k127_6429288_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009884 417.0
LYD1_k127_6429288_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 385.0
LYD1_k127_6429288_3 - - - - 0.000000000002089 75.0
LYD1_k127_6438276_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000003245 242.0
LYD1_k127_6438276_1 Transcriptional regulator, MerR family - - - 0.00000000000000000000002578 104.0
LYD1_k127_645174_0 COGs COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002377 275.0
LYD1_k127_645174_1 Tetratricopeptide repeat - - - 0.0002819 51.0
LYD1_k127_6484467_0 O-Antigen ligase K02847 - - 0.0000000000000000000000000000000000006595 154.0
LYD1_k127_6488657_0 transferase activity, transferring glycosyl groups K18785 - 2.4.1.319,2.4.1.320 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009081 594.0
LYD1_k127_6488657_1 Cold shock protein domain K03704 - - 0.000000000000000000000002502 106.0
LYD1_k127_6488657_2 transferase activity, transferring glycosyl groups K00713,K06338 - - 0.00000000000089 68.0
LYD1_k127_6488657_3 NADH ubiquinone oxidoreductase, 20 - - - 0.00000008338 58.0
LYD1_k127_6503722_0 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 342.0
LYD1_k127_6509029_0 TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005283 444.0
LYD1_k127_6509029_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000373 267.0
LYD1_k127_6509029_2 Iron-binding zinc finger CDGSH type K05710 - - 0.00000000000000000000000002597 111.0
LYD1_k127_6509029_3 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000002197 76.0
LYD1_k127_6514589_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 2.248e-200 637.0
LYD1_k127_6514589_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 617.0
LYD1_k127_6514589_2 LOR SDH bifunctional enzyme conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 395.0
LYD1_k127_6514589_3 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004455,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022607,GO:0036094,GO:0042802,GO:0043167,GO:0043169,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 362.0
LYD1_k127_6523170_0 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004309 398.0
LYD1_k127_6523170_1 Binding-protein-dependent transport system inner membrane component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 294.0
LYD1_k127_6523170_2 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000326 251.0
LYD1_k127_6527161_0 COG1073 Hydrolases of the alpha beta superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 409.0
LYD1_k127_6527161_1 PFAM Tetratricopeptide repeat - - - 0.0000000000000000000001658 112.0
LYD1_k127_6527161_2 T4-like virus tail tube protein gp19 - - - 0.000004436 49.0
LYD1_k127_65336_0 Exodeoxyribonuclease V, gamma subunit K03583 - 3.1.11.5 4.259e-225 725.0
LYD1_k127_65336_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 297.0
LYD1_k127_6542488_0 family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 466.0
LYD1_k127_6542488_1 - - - - 0.0000000000000000000000000000000000476 140.0
LYD1_k127_6549571_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K00945,K02945,K03527 - 1.17.7.4,2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 367.0
LYD1_k127_6549571_1 Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7' K00231,K00514,K02293,K09879,K21677 - 1.17.8.1,1.3.3.15,1.3.3.4,1.3.5.5,1.3.5.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 365.0
LYD1_k127_6549571_2 glycosyl transferase family 2 K00720 - 2.4.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001566 273.0
LYD1_k127_6549571_3 YdjC-like protein K03478 - 3.5.1.105 0.000000000000000000000000000000000000000000000000000000000000000000000008121 252.0
LYD1_k127_6553829_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.00000000000000000000000000000000000000000000000000000002975 200.0
LYD1_k127_6553829_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000008439 175.0
LYD1_k127_6553829_2 TIGRFAM geranylgeranyl reductase - - - 0.0000000000000000000000005074 111.0
LYD1_k127_6565429_0 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 308.0
LYD1_k127_6565429_1 Ferric uptake regulator family K03711 - - 0.00000000000000000000000000000000000004345 155.0
LYD1_k127_6573858_1 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000003698 166.0
LYD1_k127_6573858_2 - - - - 0.0000000000000000000000000000006517 134.0
LYD1_k127_657993_0 Tricorn protease homolog - - - 0.0 1424.0
LYD1_k127_65904_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 397.0
LYD1_k127_65904_1 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 347.0
LYD1_k127_65904_2 Belongs to the CinA family K03742 - 3.5.1.42 0.000000000000000000000000000000000000000000000000003917 186.0
LYD1_k127_65904_3 phosphatidylglycerophosphatase activity K01095 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030258,GO:0031224,GO:0031226,GO:0032026,GO:0042221,GO:0042577,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046839,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901576 3.1.3.27 0.0000000000000000000000000003708 119.0
LYD1_k127_65904_4 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 - 0.000000000000001264 78.0
LYD1_k127_6602095_0 2-epimerase K16213 - 5.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005528 457.0
LYD1_k127_6602095_1 Orotidine 5'-phosphate decarboxylase / HUMPS family K08093 - 4.1.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006113 347.0
LYD1_k127_6602095_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000006833 183.0
LYD1_k127_6602095_3 4Fe-4S dicluster domain K05524 - - 0.0000000000000000000000000009469 113.0
LYD1_k127_6605070_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 633.0
LYD1_k127_6605070_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000003887 234.0
LYD1_k127_6605070_2 Histidine kinase K11617 - 2.7.13.3 0.00000359 57.0
LYD1_k127_6614915_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 549.0
LYD1_k127_6614915_1 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009789 283.0
LYD1_k127_6614915_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002186 276.0
LYD1_k127_6614915_3 Helix-hairpin-helix motif K02237 - - 0.00000000000002871 76.0
LYD1_k127_665581_0 lysine biosynthetic process via aminoadipic acid - - - 3.382e-201 655.0
LYD1_k127_665581_1 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000005358 170.0
LYD1_k127_6667892_0 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000988 356.0
LYD1_k127_6667892_1 - - - - 0.00000000000000000000000000000000002255 152.0
LYD1_k127_6667892_2 Yqey-like protein K09117 - - 0.000000000000000000000000000000001147 136.0
LYD1_k127_6668036_0 Putative exonuclease SbcCD, C subunit K03546 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 405.0
LYD1_k127_6668036_1 Exodeoxyribonuclease V, gamma subunit K03583 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000005804 241.0
LYD1_k127_6687698_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003912 419.0
LYD1_k127_6687698_1 Arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000000001577 155.0
LYD1_k127_6687698_2 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000002866 109.0
LYD1_k127_6687698_3 - - - - 0.000000859 55.0
LYD1_k127_6688372_0 Anti-sigma-K factor rskA K18682 - - 0.0000000000000003165 87.0
LYD1_k127_6689239_0 Ftsk_gamma K03466 - - 3.342e-225 724.0
LYD1_k127_6689239_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 605.0
LYD1_k127_6689239_10 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.00000000000000000000000000000000002024 140.0
LYD1_k127_6689239_11 CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000002217 121.0
LYD1_k127_6689239_12 DNA-binding transcription factor activity - - - 0.00000000000000000000005169 101.0
LYD1_k127_6689239_13 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840 - 5.4.2.2,5.4.2.8 0.00000005311 56.0
LYD1_k127_6689239_14 cell cycle K05589,K12065,K13052 - - 0.0000001618 57.0
LYD1_k127_6689239_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 506.0
LYD1_k127_6689239_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 496.0
LYD1_k127_6689239_4 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 412.0
LYD1_k127_6689239_5 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 366.0
LYD1_k127_6689239_6 Phospholipase/Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003666 275.0
LYD1_k127_6689239_7 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000003265 244.0
LYD1_k127_6689239_8 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.0000000000000000000000000000000000000000000000000005938 194.0
LYD1_k127_6689239_9 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000003859 176.0
LYD1_k127_6693854_0 Transglycosylase K05365 - 2.4.1.129,3.4.16.4 1.839e-222 717.0
LYD1_k127_6693854_1 DeoC/LacD family aldolase K01635 - 4.1.2.40 0.00000000000000000000000000000000000001955 146.0
LYD1_k127_6693854_2 flagella protein K07327,K07328 - - 0.00001335 55.0
LYD1_k127_6696753_0 Oxygen tolerance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001943 292.0
LYD1_k127_6696753_1 Tetratricopeptide repeat - - - 0.000000000000000000000004241 109.0
LYD1_k127_6702663_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007524 508.0
LYD1_k127_6702663_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 414.0
LYD1_k127_6702663_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000001219 260.0
LYD1_k127_6728769_0 integral membrane protein - - - 0.00000000004718 70.0
LYD1_k127_6728769_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0002769 49.0
LYD1_k127_6736365_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 2.155e-235 744.0
LYD1_k127_6736365_1 exodeoxyribonuclease VII activity K03602 - 3.1.11.6 0.00000000000000004441 83.0
LYD1_k127_6736365_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000002853 66.0
LYD1_k127_6736365_3 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.226,2.1.1.227 0.000408 43.0
LYD1_k127_6746919_0 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000002659 229.0
LYD1_k127_6746919_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000005189 136.0
LYD1_k127_6747464_0 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K16016 - 4.2.1.144 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 474.0
LYD1_k127_6747464_1 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 470.0
LYD1_k127_6747464_2 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 321.0
LYD1_k127_6748792_0 Cys/Met metabolism PLP-dependent enzyme K01739,K01758,K01760 - 2.5.1.48,4.4.1.1,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 533.0
LYD1_k127_6748792_1 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 347.0
LYD1_k127_6748792_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 332.0
LYD1_k127_6751257_0 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 518.0
LYD1_k127_6751257_1 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009781 346.0
LYD1_k127_6751257_2 Enoyl-CoA hydratase/isomerase K01715,K07537 - 4.2.1.100,4.2.1.17 0.000000001281 59.0
LYD1_k127_6751257_3 Predicted membrane protein (DUF2085) - - - 0.00000001239 62.0
LYD1_k127_6752437_0 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001118 299.0
LYD1_k127_6752437_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000276 251.0
LYD1_k127_6752437_2 Bacterial Peptidase A24 N-terminal domain K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000003046 253.0
LYD1_k127_6752437_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000001312 246.0
LYD1_k127_6752437_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000003887 213.0
LYD1_k127_6752437_5 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000709 206.0
LYD1_k127_6752437_6 Histidine kinase K02668,K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000009759 201.0
LYD1_k127_6756988_0 peptidyl-tyrosine sulfation - - - 0.0000002035 64.0
LYD1_k127_6756988_1 protein kinase activity - - - 0.0000007946 59.0
LYD1_k127_6758632_0 Domain of unknown function K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 308.0
LYD1_k127_6758632_1 - - - - 0.000000000000001483 83.0
LYD1_k127_6758632_2 GYD domain - - - 0.000000007456 57.0
LYD1_k127_6774586_0 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000000000002702 144.0
LYD1_k127_6774586_1 PFAM CHAD domain containing protein - - - 0.0000000000000001081 92.0
LYD1_k127_6774586_2 guanylate kinase activity - - - 0.00000000001081 65.0
LYD1_k127_6788657_0 protein-disulfide reductase activity K04084,K06196 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 440.0
LYD1_k127_6788657_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006952 331.0
LYD1_k127_6788657_2 Trypsin K08070,K08372 - 1.3.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000001679 269.0
LYD1_k127_6788657_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000007026 175.0
LYD1_k127_6788657_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.000000000000000000000000000001845 126.0
LYD1_k127_6791309_0 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K11177 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 421.0
LYD1_k127_6791309_1 PFAM molybdopterin dehydrogenase, FAD-binding K11178 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 380.0
LYD1_k127_6791309_2 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000008097 226.0
LYD1_k127_679527_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000307 444.0
LYD1_k127_679527_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 304.0
LYD1_k127_679527_2 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000008808 240.0
LYD1_k127_679527_3 lytic transglycosylase activity K03194 - - 0.000000000000000006175 96.0
LYD1_k127_6800773_0 malic enzyme K00027 - 1.1.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 561.0
LYD1_k127_6802390_0 Ammonium Transporter Family K03320 - - 1.393e-277 860.0
LYD1_k127_6802390_1 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000001424 164.0
LYD1_k127_6802390_2 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000717 133.0
LYD1_k127_6802395_0 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.000000000000000000000000000000000000000000000000000000000000001692 229.0
LYD1_k127_6802395_1 ABC 3 transport family K02075 - - 0.000000000000000000000000000000000000000000000000000000003444 205.0
LYD1_k127_6803723_0 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001651 255.0
LYD1_k127_6803723_1 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001534 243.0
LYD1_k127_6816579_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004227 417.0
LYD1_k127_6816579_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000003986 246.0
LYD1_k127_6816579_2 Regulatory protein - - - 0.0000000000000000000000000000693 120.0
LYD1_k127_6816579_3 Histidine kinase-like ATPases - - - 0.00000005923 55.0
LYD1_k127_6816579_4 - - - - 0.0001078 46.0
LYD1_k127_6823578_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 449.0
LYD1_k127_689932_0 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.0 1003.0
LYD1_k127_709637_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 575.0
LYD1_k127_709637_1 Uncharacterized ACR, COG1993 K09137 - - 0.0000004301 54.0
LYD1_k127_714605_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 463.0
LYD1_k127_714605_1 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000001306 66.0
LYD1_k127_72439_0 deoxyhypusine monooxygenase activity K00627,K02160,K07402 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000007262 226.0
LYD1_k127_72439_1 4Fe-4S binding domain K00395,K02572,K03616 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000000000004674 213.0
LYD1_k127_72463_0 Transposase IS116 IS110 IS902 family - - - 0.000000000000000000000000000000000000000000013 175.0
LYD1_k127_72634_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 509.0
LYD1_k127_72634_1 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 512.0
LYD1_k127_72634_2 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004722 276.0
LYD1_k127_72634_3 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000002607 237.0
LYD1_k127_72634_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000277 173.0
LYD1_k127_72634_5 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000001443 134.0
LYD1_k127_72634_6 mttA/Hcf106 family K03116 - - 0.000000000000000001596 89.0
LYD1_k127_72634_7 - - - - 0.000000000000005091 80.0
LYD1_k127_72634_8 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.00000000001391 74.0
LYD1_k127_72634_9 - - - - 0.00001073 53.0
LYD1_k127_746697_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 1.185e-280 871.0
LYD1_k127_746697_1 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.00000000000000000000000000003715 119.0
LYD1_k127_74730_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 436.0
LYD1_k127_756972_0 Type ii and iii secretion system protein K02453 - - 8.57e-244 768.0
LYD1_k127_756972_1 general secretion pathway protein K02456 - - 0.000000000000000000000000000601 117.0
LYD1_k127_78233_0 Sodium/calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 391.0
LYD1_k127_78233_1 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002377 278.0
LYD1_k127_78233_2 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000001576 51.0
LYD1_k127_789347_0 Chromate K07240 - - 0.00000000000000000000004554 112.0
LYD1_k127_789347_1 transposition K07497,K09958 - - 0.00000886 48.0
LYD1_k127_796792_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 537.0
LYD1_k127_796792_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 427.0
LYD1_k127_796792_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000004722 166.0
LYD1_k127_808273_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 450.0
LYD1_k127_808273_1 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 338.0
LYD1_k127_808273_2 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000006846 87.0
LYD1_k127_814367_0 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000002686 183.0
LYD1_k127_814367_1 cell redox homeostasis - - - 0.00000000000000000000003746 106.0
LYD1_k127_820987_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 406.0
LYD1_k127_820987_1 signal sequence binding K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 317.0
LYD1_k127_820987_2 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000518 266.0
LYD1_k127_820987_3 - - - - 0.00000000001258 67.0
LYD1_k127_828195_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 502.0
LYD1_k127_828195_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000001119 192.0
LYD1_k127_831499_0 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 354.0
LYD1_k127_831499_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000001156 161.0
LYD1_k127_831499_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000001121 158.0
LYD1_k127_831499_3 AntiSigma factor - - - 0.00000000000000000002022 100.0
LYD1_k127_836190_0 beta-galactosidase activity K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000001591 185.0
LYD1_k127_839351_0 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.0000000000000000000000000000000001536 143.0
LYD1_k127_839351_1 (FHA) domain - - - 0.0000000000006277 76.0
LYD1_k127_839351_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000003667 59.0
LYD1_k127_845934_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 0.00000000000000000000000000000000000000000000000000000000006787 217.0
LYD1_k127_845934_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000231 85.0
LYD1_k127_845934_2 glucosamine-6-phosphate deaminase activity K02564 GO:0003674,GO:0003824,GO:0004342,GO:0006040,GO:0006041,GO:0006043,GO:0006044,GO:0006046,GO:0008150,GO:0008152,GO:0009056,GO:0009405,GO:0009607,GO:0016787,GO:0016853,GO:0016860,GO:0016861,GO:0019239,GO:0030447,GO:0036180,GO:0040007,GO:0044182,GO:0044419,GO:0046348,GO:0050896,GO:0051704,GO:0071704,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901575 3.5.99.6 0.000003592 52.0
LYD1_k127_855863_0 Ribosomal protein S1 K02945,K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 482.0
LYD1_k127_855863_1 PFAM Histidine triad (HIT) protein K19710 - 2.7.7.53 0.000000000000000000000000000000000000000000000000641 179.0
LYD1_k127_855863_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.000000000000000000000000000000000000007979 149.0
LYD1_k127_856514_0 Aldehyde dehydrogenase family K00131 - 1.2.1.9 1.986e-204 647.0
LYD1_k127_856514_1 response regulator, receiver K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005034 249.0
LYD1_k127_856514_2 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000006088 173.0
LYD1_k127_856514_3 PspC domain K03973 - - 0.000000000000004312 79.0
LYD1_k127_862161_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 1.313e-229 718.0
LYD1_k127_862161_1 permease - - - 0.000000000000000000000000000000000000000001867 164.0
LYD1_k127_862161_2 Rhomboid family - - - 0.0000001968 55.0
LYD1_k127_880821_0 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000001157 265.0
LYD1_k127_880821_1 cobalt ion transport K02007 GO:0000041,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015675,GO:0016020,GO:0016021,GO:0030001,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000222 265.0
LYD1_k127_880821_2 Cobalt transport protein K02008 - - 0.000000000000000000009749 98.0
LYD1_k127_880821_3 cobalt ion transport K02009 - - 0.000000000000000000696 93.0
LYD1_k127_883450_0 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 516.0
LYD1_k127_883450_1 Belongs to the NAGSA dehydrogenase family. Type 1 subfamily K00145,K05829 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005605 495.0
LYD1_k127_883450_2 PFAM ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp K05827 - 6.3.2.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 396.0
LYD1_k127_883450_3 - K05826 - - 0.0000000000000000006834 89.0
LYD1_k127_885047_0 Amidase K01426 - 3.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008332 615.0
LYD1_k127_885047_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 422.0
LYD1_k127_885047_2 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003275 343.0
LYD1_k127_887049_0 4 iron, 4 sulfur cluster binding - - - 3.8e-247 775.0
LYD1_k127_887049_1 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.00000000000000000000000000000000000000000004644 162.0
LYD1_k127_902307_0 PFAM beta-lactamase domain protein K02238 - - 0.0000000143 64.0
LYD1_k127_902307_1 Glycosyl hydrolases family 38 C-terminal domain K01191 - 3.2.1.24 0.00004963 53.0
LYD1_k127_907820_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 2.262e-201 634.0
LYD1_k127_907820_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924 556.0
LYD1_k127_907820_2 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.00000000000000000000000000003649 130.0
LYD1_k127_907820_3 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000001395 103.0
LYD1_k127_910972_0 Major facilitator superfamily - - - 0.00000000000000000000000000000000007924 148.0
LYD1_k127_910972_1 Integrase core domain K07497 - - 0.000000000000000000000000000003988 121.0
LYD1_k127_913119_0 Amino acid adenylation domain - - - 2.906e-290 903.0
LYD1_k127_913938_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 1.651e-224 709.0
LYD1_k127_913938_1 signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 323.0
LYD1_k127_913938_2 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000001568 152.0
LYD1_k127_915258_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 331.0
LYD1_k127_915258_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005826 253.0
LYD1_k127_915258_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000003558 237.0
LYD1_k127_915258_3 PFAM Integrase catalytic - - - 0.00000000000000000615 87.0
LYD1_k127_919183_0 4 iron, 4 sulfur cluster binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 369.0
LYD1_k127_919183_1 ATPase BadF BadG BcrA BcrD type - - - 0.000000000000000000000000000000000000000000009289 164.0
LYD1_k127_919183_2 arylsulfatase activity - - - 0.0000000000000000001967 92.0
LYD1_k127_919792_0 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000006483 189.0
LYD1_k127_919792_1 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.000000000000000000000000000000000000000000008068 178.0
LYD1_k127_919792_2 Bacterial Ig-like domain 2 - - - 0.0000000000000000000000000003838 128.0
LYD1_k127_927929_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 294.0
LYD1_k127_927929_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000001248 222.0
LYD1_k127_927929_2 Hsp20/alpha crystallin family K13993 - - 0.00000000000000004779 86.0
LYD1_k127_927929_3 RNA polymerase sigma factor K03088 - - 0.000000000001558 68.0
LYD1_k127_934873_0 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 590.0
LYD1_k127_934873_1 Exonuclease K07502 - - 0.000000000000000000000000000000000000000000000000000000000002692 222.0
LYD1_k127_934873_2 signal transduction histidine kinase - - - 0.0000000000000000000000000000004402 124.0
LYD1_k127_934900_0 Oligoendopeptidase f - - - 9.752e-249 786.0
LYD1_k127_934900_1 Putative prokaryotic signal transducing protein - - - 0.000000000000003285 78.0
LYD1_k127_93877_0 AAA ATPase, central domain protein K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 557.0
LYD1_k127_93877_1 Domain of unknown function (DUF1998) K06877 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 398.0
LYD1_k127_93877_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000006141 181.0
LYD1_k127_93877_3 SpoU rRNA Methylase family K03437 - - 0.0000000000000000000000000000000000000000000001234 178.0
LYD1_k127_93877_4 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000000000007454 173.0
LYD1_k127_93877_5 DUF218 domain - - - 0.0000000000000000000000000000000000002932 148.0
LYD1_k127_93877_6 extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000003907 81.0
LYD1_k127_93877_7 Prolyl oligopeptidase family - - - 0.000002502 54.0
LYD1_k127_939423_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 458.0
LYD1_k127_939423_1 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 331.0
LYD1_k127_939423_2 Protein containing tetrapyrrole methyltransferase domain and MazG-like K02428,K02499 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000007351 258.0
LYD1_k127_940328_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 409.0
LYD1_k127_952633_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 6.492e-203 635.0
LYD1_k127_952633_1 PFAM cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000002605 250.0
LYD1_k127_952633_2 TIGRFAM Caa(3)-type oxidase, subunit IV K02277 - 1.9.3.1 0.00000000000000000000002576 103.0
LYD1_k127_952633_3 oxidoreductase activity, acting on diphenols and related substances as donors K02636,K03886 - 1.10.9.1 0.0000007937 54.0
LYD1_k127_959995_0 PFAM Xylose isomerase K01820 - 5.3.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 561.0
LYD1_k127_959995_1 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 503.0
LYD1_k127_959995_2 PFAM magnesium chelatase ChlI subunit K07391 - - 0.0000000000000000000000000000000000000000000000000006909 186.0
LYD1_k127_959995_3 - - - - 0.0000007547 61.0
LYD1_k127_961922_0 PFAM Major facilitator superfamily - - - 0.000000000001678 72.0
LYD1_k127_961922_1 nucleotide phosphatase activity, acting on free nucleotides - - - 0.00005202 55.0
LYD1_k127_968738_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002621 543.0
LYD1_k127_97502_0 Endoribonuclease that initiates mRNA decay K18682 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 547.0
LYD1_k127_97502_1 TIGRFAM metallophosphoesterase, MG_246 BB_0505 family K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 330.0
LYD1_k127_97502_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000009678 262.0
LYD1_k127_97502_3 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000005936 93.0
LYD1_k127_97502_4 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000009707 66.0
LYD1_k127_97502_5 - - - - 0.0001425 47.0
LYD1_k127_976036_0 sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 409.0
LYD1_k127_976036_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004095 266.0
LYD1_k127_976500_0 Sigma-54 interaction domain K15836 - - 7.765e-208 667.0
LYD1_k127_976500_1 Putative Na+/H+ antiporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 419.0
LYD1_k127_987776_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 447.0
LYD1_k127_987776_1 Peptidase dimerisation domain K01439,K13049 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 362.0
LYD1_k127_992297_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006514 352.0
LYD1_k127_992297_1 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000006005 165.0
LYD1_k127_992297_2 Tetratricopeptide repeat - - - 0.0000000000000000000007832 106.0