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Overview

ID MAG02032
Name LYD1_bin.16
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Bacteroidota
Class Bacteroidia
Order Bacteroidales
Family VadinHA17
Genus LD21
Species
Assembly information
Completeness (%) 88.26
Contamination (%) 1.86
GC content (%) 41.0
N50 (bp) 20,390
Genome size (bp) 3,440,976

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2871

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1001383_0 ATP synthesis coupled electron transport K00336 - 1.6.5.3 2.508e-302 951.0
LYD1_k127_1001383_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 1.987e-278 865.0
LYD1_k127_1001383_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 469.0
LYD1_k127_1001383_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008137,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1902600,GO:1990204 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 405.0
LYD1_k127_1001383_12 capsule biosynthesis protein CapA K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 342.0
LYD1_k127_1001383_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 310.0
LYD1_k127_1001383_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000979 295.0
LYD1_k127_1001383_15 Domain of unknown function (DUF4162) K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000148 243.0
LYD1_k127_1001383_16 Acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003818 244.0
LYD1_k127_1001383_17 Domain of unknown function (DUF4290) - - - 0.00000000000000000000000000000000000000000000000000000000000003922 220.0
LYD1_k127_1001383_18 FtsZ-dependent cytokinesis - - - 0.000000000000000000000000000000000000000000000000000000000001471 215.0
LYD1_k127_1001383_19 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000004124 214.0
LYD1_k127_1001383_2 Transport of potassium into the cell K03549 - - 7.832e-229 725.0
LYD1_k127_1001383_20 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000872 193.0
LYD1_k127_1001383_21 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000005671 173.0
LYD1_k127_1001383_22 NADH ubiquinone oxidoreductase subunit 6 (chain J) K00339 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016021,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.0000000000000000000000000000000000000000000007474 171.0
LYD1_k127_1001383_23 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000001588 162.0
LYD1_k127_1001383_24 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000002815 125.0
LYD1_k127_1001383_25 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000001001 121.0
LYD1_k127_1001383_26 - - - - 0.00000000001345 69.0
LYD1_k127_1001383_3 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 3.123e-226 717.0
LYD1_k127_1001383_4 K+ potassium transporter K03549 - - 1.765e-225 715.0
LYD1_k127_1001383_5 5TM C-terminal transporter carbon starvation CstA K06200 - - 2.168e-215 685.0
LYD1_k127_1001383_6 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 4.495e-211 662.0
LYD1_k127_1001383_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 3.579e-201 633.0
LYD1_k127_1001383_8 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 565.0
LYD1_k127_1001383_9 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006293 529.0
LYD1_k127_1008745_0 lysine 2,3-aminomutase activity K01843,K19810 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 471.0
LYD1_k127_1008745_1 Class I peptide chain release factor K15034 - - 0.000051 49.0
LYD1_k127_1020656_0 RNA methyltransferase, RsmD family K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000000000004889 195.0
LYD1_k127_1020656_1 domain, Protein - - - 0.00000000000000000000000005858 118.0
LYD1_k127_1020656_2 Protein of unknown function (DUF3822) - - - 0.000000000000000000006 103.0
LYD1_k127_102403_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 496.0
LYD1_k127_102403_1 Mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 410.0
LYD1_k127_102403_10 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000003795 187.0
LYD1_k127_102403_11 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000001147 139.0
LYD1_k127_102403_12 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000008994 129.0
LYD1_k127_102403_13 Domain of unknown function (DUF4296) - - - 0.0001053 53.0
LYD1_k127_102403_2 Efflux ABC transporter, permease protein K09808,K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 383.0
LYD1_k127_102403_3 ATPases associated with a variety of cellular activities K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009122 361.0
LYD1_k127_102403_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 376.0
LYD1_k127_102403_5 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 316.0
LYD1_k127_102403_6 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 310.0
LYD1_k127_102403_7 amidohydrolase K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003967 290.0
LYD1_k127_102403_8 Gliding motility-associated protein GldM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001935 259.0
LYD1_k127_102403_9 gliding motility - - - 0.000000000000000000000000000000000000000000000000000000000000000006536 234.0
LYD1_k127_1065745_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 356.0
LYD1_k127_1065745_1 NmrA-like family K19267 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000003402 256.0
LYD1_k127_1065745_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000003173 224.0
LYD1_k127_1065745_3 Putative mono-oxygenase ydhR - - - 0.000000000000000002097 89.0
LYD1_k127_1065745_4 cAMP biosynthetic process - - - 0.0000000000004801 72.0
LYD1_k127_107099_0 ATPase of the PP-loop superfamily implicated in cell cycle control - - - 1.526e-196 618.0
LYD1_k127_107099_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 350.0
LYD1_k127_107099_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002953 274.0
LYD1_k127_107099_3 glutamine metabolic process K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004294 252.0
LYD1_k127_107099_4 Polysaccharide biosynthesis protein K17716 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000001616 237.0
LYD1_k127_107099_5 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000006851 154.0
LYD1_k127_107099_6 Methyltransferase domain - - - 0.000000000000000000000000000000000003317 146.0
LYD1_k127_1080326_0 Domain of unknown function (DUF4249) - - - 0.00000000000000000000000000000000000007845 152.0
LYD1_k127_1080326_1 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000007814 146.0
LYD1_k127_108095_0 Alpha-1,2-mannosidase - - - 2.977e-261 824.0
LYD1_k127_108095_1 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 9.274e-217 710.0
LYD1_k127_108095_10 - - - - 0.000000000000000000000000000005238 129.0
LYD1_k127_108095_11 COGs COG4591 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.000000000000000000001225 95.0
LYD1_k127_108095_12 Dodecin K09165 - - 0.0000000000000000004398 88.0
LYD1_k127_108095_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 413.0
LYD1_k127_108095_3 COG4591 ABC-type transport system, involved in lipoprotein release, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000917 394.0
LYD1_k127_108095_4 MacB-like periplasmic core domain K02004,K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 383.0
LYD1_k127_108095_5 TIGRFAM geranylgeranyl reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009696 358.0
LYD1_k127_108095_6 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 321.0
LYD1_k127_108095_7 AAA domain, putative AbiEii toxin, Type IV TA system K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 316.0
LYD1_k127_108095_8 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000000000006005 207.0
LYD1_k127_108095_9 Lysin motif - - - 0.00000000000000000000000000000000000000000007626 164.0
LYD1_k127_1086034_0 GMC oxidoreductase - - - 6.275e-220 694.0
LYD1_k127_1086034_1 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000007711 233.0
LYD1_k127_1086034_2 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000253 181.0
LYD1_k127_1095995_0 GH3 auxin-responsive promoter - - - 8.97e-214 674.0
LYD1_k127_1095995_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008704 440.0
LYD1_k127_1095995_2 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 326.0
LYD1_k127_1095995_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000001294 202.0
LYD1_k127_1095995_4 Two component regulator propeller - - - 0.0000000000000000000000000000006329 124.0
LYD1_k127_1108929_0 AMP-binding enzyme C-terminal domain K05939 - 2.3.1.40,6.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008563 587.0
LYD1_k127_1108929_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003993 416.0
LYD1_k127_1108929_10 domain, Protein - - - 0.000000000000000000000000000000000000000000000004057 196.0
LYD1_k127_1108929_11 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000003519 111.0
LYD1_k127_1108929_12 AraC-like ligand binding domain - - - 0.0000000000000000000001081 101.0
LYD1_k127_1108929_13 - - - - 0.000000000002248 69.0
LYD1_k127_1108929_2 EcsC protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 365.0
LYD1_k127_1108929_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 368.0
LYD1_k127_1108929_4 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 336.0
LYD1_k127_1108929_5 4Fe-4S single cluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 334.0
LYD1_k127_1108929_6 Domain of unknown function (DUF4918) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005415 325.0
LYD1_k127_1108929_7 Peptidase S9 prolyl oligopeptidase active site K01281 - 3.4.14.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006067 286.0
LYD1_k127_1108929_8 NlpC/P60 family K13694 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000001578 212.0
LYD1_k127_1108929_9 - - - - 0.0000000000000000000000000000000000000000000000000000001979 198.0
LYD1_k127_1114112_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 1.328e-311 972.0
LYD1_k127_112577_0 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004625 243.0
LYD1_k127_112577_1 peptidase activity K20333 - - 0.000000000000000000000000000000000000000000000003059 180.0
LYD1_k127_112577_2 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.000000000000000000000000000000000000000000002875 173.0
LYD1_k127_112577_3 - - - - 0.00000000000000000000000000000001775 130.0
LYD1_k127_116689_0 Ftsk_gamma K03466 - - 2.343e-243 775.0
LYD1_k127_116689_1 Glutamate formiminotransferase K00603,K13990 - 2.1.2.5,4.3.1.4 5.537e-235 739.0
LYD1_k127_116689_10 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 308.0
LYD1_k127_116689_11 DnaJ domain protein K05801 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006286 284.0
LYD1_k127_116689_12 NlpC/P60 family - - - 0.0000000000000000000000000000000000000000000000000000000001259 213.0
LYD1_k127_116689_13 YbbR-like protein - - - 0.00000000000000000000000000000000000000000000000000001464 201.0
LYD1_k127_116689_14 S-adenosyl-l-methionine hydroxide adenosyltransferase - - - 0.00000000000000000000000000000000000000000000000000002004 198.0
LYD1_k127_116689_15 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000000000000000000000000000000007475 178.0
LYD1_k127_116689_16 Protein of unknown function (DUF456) K09793 - - 0.00000000000000000000000000000000000000000000002095 174.0
LYD1_k127_116689_17 COG NOG14473 non supervised orthologous group - - - 0.00000000000000000000000000000000000001341 150.0
LYD1_k127_116689_18 Protein of unknown function (DUF3276) - - - 0.00000000000000000000000000000000003218 138.0
LYD1_k127_116689_19 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000486 124.0
LYD1_k127_116689_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 545.0
LYD1_k127_116689_20 LysM domain protein - - - 0.00000000000000000000000001327 118.0
LYD1_k127_116689_21 outer membrane lipoprotein carrier protein LolA K03634 - - 0.0000000000000000000000005575 112.0
LYD1_k127_116689_22 Protein of unknown function (DUF1573) - - - 0.000000000000000000000005619 106.0
LYD1_k127_116689_23 - - - - 0.0000001123 62.0
LYD1_k127_116689_3 7TM-HD extracellular K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 557.0
LYD1_k127_116689_4 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007761 530.0
LYD1_k127_116689_5 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003544 493.0
LYD1_k127_116689_6 Amino acid kinase family K00926 - 2.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 462.0
LYD1_k127_116689_7 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 391.0
LYD1_k127_116689_8 Phosphoribosyl-ATP pyrophosphohydrolase K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 354.0
LYD1_k127_116689_9 Arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 337.0
LYD1_k127_125173_0 ATPase (AAA superfamily K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 454.0
LYD1_k127_125173_1 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000005824 133.0
LYD1_k127_130091_0 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 1.191e-260 826.0
LYD1_k127_130091_1 Threonine synthase N terminus K01733 GO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 527.0
LYD1_k127_130091_2 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 286.0
LYD1_k127_130091_3 phosphoserine phosphatase homoserine phosphotransferase bifunctional protein K02203 - 2.7.1.39,3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000002725 257.0
LYD1_k127_130091_4 - - - - 0.00000000000000000000000000000002096 138.0
LYD1_k127_132787_0 Glycosyl-hydrolase 97 N-terminal K01187 - 3.2.1.20 0.0 1100.0
LYD1_k127_132787_1 PFAM peptidase S45 penicillin amidase K01434 - 3.5.1.11 2.217e-239 764.0
LYD1_k127_132787_2 PFAM EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000002418 195.0
LYD1_k127_132787_3 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000000000000000000006199 150.0
LYD1_k127_132787_4 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000001737 122.0
LYD1_k127_132787_5 CsbD-like - - - 0.000000000000009309 74.0
LYD1_k127_1350765_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1069.0
LYD1_k127_1350765_1 COG COG0383 Alpha-mannosidase - - - 2.208e-293 936.0
LYD1_k127_1350765_10 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000000000000000000000000004457 253.0
LYD1_k127_1350765_11 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000001605 212.0
LYD1_k127_1350765_12 - - - - 0.00000000000000000000000000000000000000000000000000000000002838 214.0
LYD1_k127_1350765_13 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000762 192.0
LYD1_k127_1350765_14 acyl-CoA thioester hydrolase, YbgC YbaW family K07107 - - 0.000000000000000000000000000000000000006391 149.0
LYD1_k127_1350765_15 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000013 132.0
LYD1_k127_1350765_16 Probably functions as a manganese efflux pump - - - 0.0000000000000000000000000002316 120.0
LYD1_k127_1350765_17 MoaE protein K03635 - 2.8.1.12 0.0000000000000000000000001401 111.0
LYD1_k127_1350765_18 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000000001012 99.0
LYD1_k127_1350765_19 CoA binding domain K06929 - - 0.000000000000000002107 91.0
LYD1_k127_1350765_2 mannose-6-phosphate isomerase, class I - - - 7.288e-232 731.0
LYD1_k127_1350765_20 alpha beta K06889 - - 0.00000000008016 66.0
LYD1_k127_1350765_21 Mo-molybdopterin cofactor metabolic process K03636 - - 0.0000004386 55.0
LYD1_k127_1350765_22 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000006143 52.0
LYD1_k127_1350765_3 Long-chain acyl-CoA synthetase K01897 - 6.2.1.3 3.209e-200 637.0
LYD1_k127_1350765_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 572.0
LYD1_k127_1350765_5 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 479.0
LYD1_k127_1350765_6 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008031 392.0
LYD1_k127_1350765_7 Polyprenyl synthetase K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 370.0
LYD1_k127_1350765_8 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 346.0
LYD1_k127_1350765_9 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 291.0
LYD1_k127_1355968_0 Class II Aldolase and Adducin N-terminal domain - - - 7.19e-221 703.0
LYD1_k127_1355968_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K19956 - - 0.0000000000000000000000000000000000000000000000000000000000001322 214.0
LYD1_k127_1355968_2 PHP domain protein - - - 0.0000000000000000000000000000000000001936 145.0
LYD1_k127_1372981_0 PIN domain K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 590.0
LYD1_k127_1372981_1 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 472.0
LYD1_k127_1372981_10 PFAM Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001532 280.0
LYD1_k127_1372981_11 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005107 275.0
LYD1_k127_1372981_12 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000132 188.0
LYD1_k127_1372981_13 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.000000000000000000000000000000000001491 158.0
LYD1_k127_1372981_14 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.00000001977 67.0
LYD1_k127_1372981_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 469.0
LYD1_k127_1372981_3 Fibronectin type 3 domain K21571 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 396.0
LYD1_k127_1372981_4 Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 334.0
LYD1_k127_1372981_5 glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 327.0
LYD1_k127_1372981_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 346.0
LYD1_k127_1372981_7 Fibronectin type 3 domain K21571 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 333.0
LYD1_k127_1372981_8 Fibronectin type 3 domain K21571 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 314.0
LYD1_k127_1372981_9 Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 292.0
LYD1_k127_1374404_0 - - - - 9.172e-230 766.0
LYD1_k127_1374404_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 325.0
LYD1_k127_1374404_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003711 273.0
LYD1_k127_1374404_3 DoxX family - - - 0.000000000000000000000000000000000007507 143.0
LYD1_k127_1374404_4 Arc-like DNA binding domain - - - 0.0000000000001255 72.0
LYD1_k127_1374461_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 6.332e-294 908.0
LYD1_k127_1374461_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 408.0
LYD1_k127_1374461_10 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000003934 128.0
LYD1_k127_1374461_11 Sulfurtransferase - - - 0.00000000007685 65.0
LYD1_k127_1374461_12 Protein of unknown function (DUF2892) - - - 0.0000006868 51.0
LYD1_k127_1374461_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 315.0
LYD1_k127_1374461_3 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000001577 238.0
LYD1_k127_1374461_4 DoxX K16937 - 1.8.5.2 0.000000000000000000000000000000000000000000000000000000000001474 213.0
LYD1_k127_1374461_5 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000009774 191.0
LYD1_k127_1374461_7 SPTR Transposase - - - 0.00000000000000000000000000000000000000002797 156.0
LYD1_k127_1374461_9 ketosteroid isomerase - - - 0.000000000000000000000000000000000003927 141.0
LYD1_k127_1377797_0 Oxidoreductase - - - 1.915e-283 875.0
LYD1_k127_1377797_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.672e-263 820.0
LYD1_k127_1377797_10 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000001407 170.0
LYD1_k127_1377797_11 CHAT domain - - - 0.000000000000000000000001217 116.0
LYD1_k127_1377797_12 WD domain, G-beta repeat - - - 0.00000000000000000001116 108.0
LYD1_k127_1377797_13 - - - - 0.000000000002988 70.0
LYD1_k127_1377797_14 ASPIC UnbV domain protein - - - 0.000004537 50.0
LYD1_k127_1377797_2 Transporter, major facilitator family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 561.0
LYD1_k127_1377797_3 GIY-YIG type nucleases (URI domain) K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 527.0
LYD1_k127_1377797_4 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 401.0
LYD1_k127_1377797_5 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 365.0
LYD1_k127_1377797_6 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 343.0
LYD1_k127_1377797_7 glycyl-radical enzyme activating activity K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 337.0
LYD1_k127_1377797_8 Leucine-rich repeat (LRR) protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001689 274.0
LYD1_k127_1377797_9 Aminotransferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000002837 222.0
LYD1_k127_141336_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000425 339.0
LYD1_k127_141336_1 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 336.0
LYD1_k127_141336_2 IPT/TIG domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009833 268.0
LYD1_k127_141336_3 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000003159 264.0
LYD1_k127_141336_4 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000812 259.0
LYD1_k127_141336_5 Redoxin family - - - 0.00000000000000000000000000000000000000000002016 166.0
LYD1_k127_141336_6 PFAM Bacterial regulatory helix-turn-helix proteins, AraC family - - - 0.000000000000000000000000000001507 129.0
LYD1_k127_141336_7 Two component regulator propeller - - - 0.0000000000000003056 90.0
LYD1_k127_141336_8 - - - - 0.00000002487 66.0
LYD1_k127_1419978_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 9.33e-293 919.0
LYD1_k127_1419978_1 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 5.334e-288 907.0
LYD1_k127_1419978_10 CotH kinase protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 578.0
LYD1_k127_1419978_11 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004821 552.0
LYD1_k127_1419978_12 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 489.0
LYD1_k127_1419978_13 Psort location Cytoplasmic, score 9.26 K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 455.0
LYD1_k127_1419978_14 ABC transporter substrate-binding component GldG K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 452.0
LYD1_k127_1419978_15 Belongs to the aldehyde dehydrogenase family K00128,K22445 - 1.2.1.3,1.2.99.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 439.0
LYD1_k127_1419978_16 Trehalose utilisation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 410.0
LYD1_k127_1419978_17 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 413.0
LYD1_k127_1419978_18 DNA polymerase III subunit epsilon K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 368.0
LYD1_k127_1419978_19 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 374.0
LYD1_k127_1419978_2 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs - - - 5.506e-259 816.0
LYD1_k127_1419978_20 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009803 303.0
LYD1_k127_1419978_21 Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion K02564 - 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 298.0
LYD1_k127_1419978_22 TIGRFAM Gliding motility-associated ABC transporter permease protein GldF K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 285.0
LYD1_k127_1419978_23 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002228 276.0
LYD1_k127_1419978_24 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005727 268.0
LYD1_k127_1419978_25 NIF3 (NGG1p interacting factor 3) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001006 273.0
LYD1_k127_1419978_26 HlyD membrane-fusion protein of T1SS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002394 277.0
LYD1_k127_1419978_27 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000112 264.0
LYD1_k127_1419978_28 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005827 271.0
LYD1_k127_1419978_29 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001462 254.0
LYD1_k127_1419978_3 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 2.642e-242 768.0
LYD1_k127_1419978_30 PFAM 2Fe-2S -binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000003923 237.0
LYD1_k127_1419978_31 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000000000000003953 226.0
LYD1_k127_1419978_32 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141,K19190 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019720,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061602,GO:0070567,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902759,GO:1902760 1.1.1.328,2.7.7.76 0.000000000000000000000000000000000000000000000004565 178.0
LYD1_k127_1419978_33 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000786 168.0
LYD1_k127_1419978_35 peptidase M1 - - - 0.0000000000000000001167 90.0
LYD1_k127_1419978_36 PFAM Bacterial protein of - - - 0.000000000000000002798 92.0
LYD1_k127_1419978_37 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000004975 76.0
LYD1_k127_1419978_38 - - - - 0.00000000000004212 76.0
LYD1_k127_1419978_39 - - - - 0.00000000001068 76.0
LYD1_k127_1419978_4 lysine biosynthetic process via aminoadipic acid - - - 9.804e-237 752.0
LYD1_k127_1419978_40 - - - - 0.0009716 48.0
LYD1_k127_1419978_41 Putative beta-lactamase-inhibitor-like, PepSY-like - - - 0.0009967 46.0
LYD1_k127_1419978_5 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 2.841e-218 686.0
LYD1_k127_1419978_6 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 9.206e-215 681.0
LYD1_k127_1419978_7 Putative modulator of DNA gyrase K03568 - - 4.968e-199 631.0
LYD1_k127_1419978_8 GMC oxidoreductase K03333 - 1.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 591.0
LYD1_k127_1419978_9 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 589.0
LYD1_k127_1425995_0 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 486.0
LYD1_k127_1425995_1 Pkd domain containing protein - - - 0.000000000000000000000000000000000007822 150.0
LYD1_k127_1437761_0 Glycosyl hydrolases family 2, TIM barrel domain - - - 0.0 1111.0
LYD1_k127_1437761_1 glycoside hydrolase family 2 sugar binding - - - 1.73e-322 1005.0
LYD1_k127_1437761_10 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001 261.0
LYD1_k127_1437761_11 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000007269 137.0
LYD1_k127_1437761_2 Oligoendopeptidase f - - - 1.239e-263 827.0
LYD1_k127_1437761_3 Alpha-L-fucosidase K01206 - 3.2.1.51 7.201e-223 696.0
LYD1_k127_1437761_4 Alpha-L-fucosidase K01206 - 3.2.1.51 2.337e-206 650.0
LYD1_k127_1437761_5 Oligoendopeptidase f K01283 - 3.4.15.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004133 562.0
LYD1_k127_1437761_6 Aromatic amino acid lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 547.0
LYD1_k127_1437761_7 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 441.0
LYD1_k127_1437761_8 PFAM Iron-containing alcohol dehydrogenase K00048 - 1.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 390.0
LYD1_k127_1437761_9 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 367.0
LYD1_k127_1445894_0 DNA helicase K03657 - 3.6.4.12 2.668e-204 658.0
LYD1_k127_1445894_1 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 557.0
LYD1_k127_1445894_2 Domain of unknown function (DUF5107) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 529.0
LYD1_k127_1445894_3 beta-galactosidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007779 482.0
LYD1_k127_1445894_4 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 462.0
LYD1_k127_1445894_5 Catalyzes the reversible epimerization of cellobiose to 4-O-beta-D-glucopyranosyl-D-mannose (Glc-Man) K16213 - 5.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003902 414.0
LYD1_k127_1445894_6 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 308.0
LYD1_k127_1445894_7 - - - - 0.0000000000000000000000000000000000001379 149.0
LYD1_k127_1445894_8 SprB repeat - - - 0.000000000000000000000000000000000002905 155.0
LYD1_k127_1445894_9 - - - - 0.0000000000000008338 83.0
LYD1_k127_1458579_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 3.454e-207 655.0
LYD1_k127_1458579_1 N-acetylglucosaminylinositol deacetylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004477 268.0
LYD1_k127_1458579_2 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000005375 202.0
LYD1_k127_1458579_3 - - - - 0.00000000000000000000000000000000000000000001588 166.0
LYD1_k127_1458579_4 domain, Protein K01179 - 3.2.1.4 0.00000000000006467 77.0
LYD1_k127_1469568_0 Major Facilitator Superfamily K03446 - - 3.107e-219 692.0
LYD1_k127_1469568_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 360.0
LYD1_k127_1469568_10 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000002346 141.0
LYD1_k127_1469568_11 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000001145 136.0
LYD1_k127_1469568_12 - - - - 0.0000000000000000000000003556 107.0
LYD1_k127_1469568_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 362.0
LYD1_k127_1469568_3 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 295.0
LYD1_k127_1469568_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009045 293.0
LYD1_k127_1469568_5 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001349 275.0
LYD1_k127_1469568_6 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006644 264.0
LYD1_k127_1469568_7 COG2755 Lysophospholipase L1 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002039 258.0
LYD1_k127_1469568_8 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006637 252.0
LYD1_k127_1469568_9 COGs COG5616 integral membrane protein - - - 0.0000000000000000000000000000000000000004707 162.0
LYD1_k127_1473728_0 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0 1306.0
LYD1_k127_1473728_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1070.0
LYD1_k127_1473728_10 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 411.0
LYD1_k127_1473728_11 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 338.0
LYD1_k127_1473728_12 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008428 330.0
LYD1_k127_1473728_13 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 316.0
LYD1_k127_1473728_14 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 314.0
LYD1_k127_1473728_15 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 316.0
LYD1_k127_1473728_16 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006027 306.0
LYD1_k127_1473728_17 transcriptional regulator (AraC family) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006004 267.0
LYD1_k127_1473728_18 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004848 269.0
LYD1_k127_1473728_19 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000004412 259.0
LYD1_k127_1473728_2 heavy metal translocating P-type ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 6.962e-286 897.0
LYD1_k127_1473728_20 penicillin-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002394 259.0
LYD1_k127_1473728_21 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001079 249.0
LYD1_k127_1473728_22 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000000000000000000000000000000000000000000000000000000007224 240.0
LYD1_k127_1473728_23 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000232 207.0
LYD1_k127_1473728_24 Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) K03620,K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000001003 195.0
LYD1_k127_1473728_25 cyclic nucleotide binding K01420,K10914,K21556,K21562 - - 0.000000000000000000000000000000000000003286 154.0
LYD1_k127_1473728_26 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000000000000863 143.0
LYD1_k127_1473728_27 chlorophyll binding - - - 0.00000000000000000000000000000000004308 145.0
LYD1_k127_1473728_28 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000008832 123.0
LYD1_k127_1473728_29 - - - - 0.00000000000000000006108 103.0
LYD1_k127_1473728_3 TonB-dependent receptor - - - 4.051e-280 892.0
LYD1_k127_1473728_30 Cytochrome c - - - 0.0000000004025 65.0
LYD1_k127_1473728_32 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00002875 55.0
LYD1_k127_1473728_4 Cytochrome C assembly protein - - - 1.409e-232 755.0
LYD1_k127_1473728_5 acyl-CoA dehydrogenase - - - 1.454e-207 661.0
LYD1_k127_1473728_6 PFAM RagB SusD domain protein K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 568.0
LYD1_k127_1473728_7 denitrification pathway K15876 GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 542.0
LYD1_k127_1473728_8 Domain of unknown function (DUF362) K07138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 533.0
LYD1_k127_1473728_9 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 546.0
LYD1_k127_1482214_0 NMT1-like family K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008964 293.0
LYD1_k127_1482214_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002005 234.0
LYD1_k127_1482214_2 - - - - 0.0000000000000000000004236 103.0
LYD1_k127_1494239_0 RNA polymerase I subunit A N-terminus K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2347.0
LYD1_k127_1494239_1 RNA polymerase beta subunit external 1 domain K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2145.0
LYD1_k127_1494239_10 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 447.0
LYD1_k127_1494239_11 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 404.0
LYD1_k127_1494239_12 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 379.0
LYD1_k127_1494239_13 Nitroreductase family K19285,K19286 - 1.5.1.38,1.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 359.0
LYD1_k127_1494239_14 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 334.0
LYD1_k127_1494239_15 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 322.0
LYD1_k127_1494239_16 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007733 289.0
LYD1_k127_1494239_17 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000002042 240.0
LYD1_k127_1494239_18 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000225 238.0
LYD1_k127_1494239_19 RNA methyltransferase, TrmH K03437 - - 0.0000000000000000000000000000000000000000000000000000000000000005459 228.0
LYD1_k127_1494239_2 Peptidase S46 - - - 2.9e-267 840.0
LYD1_k127_1494239_20 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000376 219.0
LYD1_k127_1494239_21 Ribosomal protein L10 K02864 - - 0.0000000000000000000000000000000000000000000000000000000000007477 214.0
LYD1_k127_1494239_22 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000000000000000006218 211.0
LYD1_k127_1494239_23 NADP oxidoreductase coenzyme F420-dependent - - - 0.000000000000000000000000000000000000000000000000000000000006616 217.0
LYD1_k127_1494239_24 COG NOG25147 non supervised orthologous group - - - 0.00000000000000000000000000000000000000000000000000000000001715 222.0
LYD1_k127_1494239_25 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000001018 198.0
LYD1_k127_1494239_26 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000000007844 186.0
LYD1_k127_1494239_27 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000002466 187.0
LYD1_k127_1494239_28 PFAM Penicillinase repressor - - - 0.000000000000000000000000000000000000000000007733 166.0
LYD1_k127_1494239_29 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000007893 158.0
LYD1_k127_1494239_3 Elongation factor Tu C-terminal domain K02358 - - 2.222e-230 716.0
LYD1_k127_1494239_30 - - - - 0.000000000000000000000000000003494 130.0
LYD1_k127_1494239_31 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000008651 123.0
LYD1_k127_1494239_32 PFAM Sigma 54 modulation protein S30EA ribosomal protein K05808 - - 0.000000000000000000000000002367 113.0
LYD1_k127_1494239_33 Ribosomal protein S21 K02970 - - 0.00000000000000000000001334 100.0
LYD1_k127_1494239_35 SecE/Sec61-gamma subunits of protein translocation complex K03073 - - 0.00000000000000005269 81.0
LYD1_k127_1494239_38 - - - - 0.00003852 47.0
LYD1_k127_1494239_4 Psort location Cytoplasmic, score K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 614.0
LYD1_k127_1494239_5 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 587.0
LYD1_k127_1494239_6 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 556.0
LYD1_k127_1494239_7 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 541.0
LYD1_k127_1494239_8 AP endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 524.0
LYD1_k127_1494239_9 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 468.0
LYD1_k127_1508316_0 Glycosyl hydrolase family 3 C-terminal domain K05349 - 3.2.1.21 0.0 1189.0
LYD1_k127_1508316_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 1.694e-283 882.0
LYD1_k127_1508316_10 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 521.0
LYD1_k127_1508316_11 PFAM Aminotransferase class I and II K10206,K14261 - 2.6.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 516.0
LYD1_k127_1508316_12 belongs to the imidazoleglycerol-phosphate dehydratase family K01089,K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 509.0
LYD1_k127_1508316_13 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 490.0
LYD1_k127_1508316_14 Carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 507.0
LYD1_k127_1508316_15 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 431.0
LYD1_k127_1508316_16 PFAM Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 424.0
LYD1_k127_1508316_17 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817,K04720 - 2.6.1.9,4.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 407.0
LYD1_k127_1508316_18 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006851 402.0
LYD1_k127_1508316_19 Cytidylyltransferase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 397.0
LYD1_k127_1508316_2 LeuA allosteric (dimerisation) domain K01649 - 2.3.3.13 1.609e-250 780.0
LYD1_k127_1508316_20 Glycosyl hydrolase 38 domain protein K01191 - 3.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 418.0
LYD1_k127_1508316_21 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 381.0
LYD1_k127_1508316_22 COG COG1082 Sugar phosphate isomerases epimerases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 377.0
LYD1_k127_1508316_23 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 352.0
LYD1_k127_1508316_24 Histidine biosynthesis protein K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 313.0
LYD1_k127_1508316_25 Histidine biosynthesis bifunctional protein hisIE K11755 - 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 294.0
LYD1_k127_1508316_26 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006491 284.0
LYD1_k127_1508316_27 Aconitase C-terminal domain K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000047 280.0
LYD1_k127_1508316_28 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007599 272.0
LYD1_k127_1508316_29 Prephenate dehydratase K04518 - 4.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000002195 253.0
LYD1_k127_1508316_3 LeuA allosteric (dimerisation) domain K09011 - 2.3.1.182 1.938e-231 726.0
LYD1_k127_1508316_30 ACT domain K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000001081 203.0
LYD1_k127_1508316_31 - - - - 0.000000000000000000000008154 108.0
LYD1_k127_1508316_32 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000302 68.0
LYD1_k127_1508316_4 Acetolactate synthase, large subunit K01652 - 2.2.1.6 4.776e-229 722.0
LYD1_k127_1508316_5 Oxidoreductase domain protein - - - 6.416e-221 692.0
LYD1_k127_1508316_6 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 1.221e-217 683.0
LYD1_k127_1508316_7 Alpha-L-fucosidase K01206 - 3.2.1.51 1.231e-216 683.0
LYD1_k127_1508316_8 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 556.0
LYD1_k127_1508316_9 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 544.0
LYD1_k127_1511288_0 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 0.0 1103.0
LYD1_k127_1511288_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 587.0
LYD1_k127_1511288_10 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 327.0
LYD1_k127_1511288_11 Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 301.0
LYD1_k127_1511288_12 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 300.0
LYD1_k127_1511288_13 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 286.0
LYD1_k127_1511288_14 YceI-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004609 227.0
LYD1_k127_1511288_15 ferroxidase activity K03594 GO:0003674,GO:0003824,GO:0004322,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033212,GO:0033214,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000001133 218.0
LYD1_k127_1511288_16 Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000000000000002894 204.0
LYD1_k127_1511288_17 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000006655 186.0
LYD1_k127_1511288_18 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000000008885 157.0
LYD1_k127_1511288_19 - - - - 0.000000000000000000000000000009001 133.0
LYD1_k127_1511288_2 Belongs to the DegT DnrJ EryC1 family K19715 - 2.6.1.109 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 544.0
LYD1_k127_1511288_20 - - - - 0.00000000000000000000000000155 115.0
LYD1_k127_1511288_21 DsrE/DsrF-like family - - - 0.0000000000000000000000008516 110.0
LYD1_k127_1511288_23 - - - - 0.000000000000001997 82.0
LYD1_k127_1511288_24 PFAM blue (type 1) copper domain protein K00368,K02638 - 1.7.2.1 0.000000000000007875 79.0
LYD1_k127_1511288_25 Nodulation protein S (NodS) - - - 0.0000000001919 64.0
LYD1_k127_1511288_26 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.0000002207 53.0
LYD1_k127_1511288_28 - K03646 - - 0.000003844 56.0
LYD1_k127_1511288_29 Peptidase C39, bacteriocin processing - - - 0.0003269 51.0
LYD1_k127_1511288_3 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006444 516.0
LYD1_k127_1511288_4 alcohol dehydrogenase K19714 - 1.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 428.0
LYD1_k127_1511288_5 Transaldolase/Fructose-6-phosphate aldolase K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 413.0
LYD1_k127_1511288_6 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004496 400.0
LYD1_k127_1511288_7 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 400.0
LYD1_k127_1511288_8 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 356.0
LYD1_k127_1511288_9 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 348.0
LYD1_k127_1517088_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009987,GO:0016020,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033218,GO:0034641,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 2.601e-262 826.0
LYD1_k127_1517088_1 PCRF K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 465.0
LYD1_k127_1517088_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000625 265.0
LYD1_k127_1517088_3 UPF0056 membrane protein K05595 - - 0.0001075 47.0
LYD1_k127_1517633_0 Lactonase, 7-bladed beta-propeller K07404 - 3.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000001431 246.0
LYD1_k127_1517633_1 Lipocalin-like domain K03098 - - 0.00000000000000000000000000000000000000001355 158.0
LYD1_k127_1544054_0 ATP-grasp domain K09181 - - 1.485e-290 906.0
LYD1_k127_1544054_1 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 3.832e-218 683.0
LYD1_k127_1544054_10 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000001353 226.0
LYD1_k127_1544054_11 Guanylate kinase homologues. K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000009146 221.0
LYD1_k127_1544054_12 Protein of unknown function (DUF3078) - - - 0.0000000000000000000000000000000000000000000000000000003246 213.0
LYD1_k127_1544054_13 ACT domain protein - - - 0.0000000000000000000000000000000000000000000009704 169.0
LYD1_k127_1544054_14 4Fe-4S binding domain protein K00176 - 1.2.7.3 0.00000000000000000000000000009337 116.0
LYD1_k127_1544054_15 - - - - 0.0000006183 58.0
LYD1_k127_1544054_16 - - - - 0.000007085 55.0
LYD1_k127_1544054_2 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006784 565.0
LYD1_k127_1544054_3 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 527.0
LYD1_k127_1544054_4 Iron-only hydrogenase maturation rSAM protein HydE K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 491.0
LYD1_k127_1544054_5 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 414.0
LYD1_k127_1544054_6 TIGR00255 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 316.0
LYD1_k127_1544054_7 2-oxoacid ferredoxin flavodoxin oxidoreductase, gamma subunit K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 295.0
LYD1_k127_1544054_8 ATPase domain predominantly from Archaea - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007204 291.0
LYD1_k127_1544054_9 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000559 278.0
LYD1_k127_1548607_0 COGs COG5616 integral membrane protein - - - 0.00000000000000000000002052 116.0
LYD1_k127_1548607_1 Tetratricopeptide repeat - - - 0.0000000000001373 84.0
LYD1_k127_1554850_0 Major Facilitator Superfamily K03535 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005376 541.0
LYD1_k127_1554850_1 Domain of Unknown Function (DUF1080) - - - 0.0000000000003057 72.0
LYD1_k127_1563391_0 alpha-glucan phosphorylase K00688,K00691,K16153 - 2.4.1.1,2.4.1.11,2.4.1.8 0.0 1554.0
LYD1_k127_1563391_1 1,4-alpha-glucan branching enzyme K00700 - 2.4.1.18 5.098e-270 846.0
LYD1_k127_1563391_10 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004671 253.0
LYD1_k127_1563391_11 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000000000000000000000004277 231.0
LYD1_k127_1563391_12 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000000008451 222.0
LYD1_k127_1563391_13 - - - - 0.0000000000000000000000000000000004448 145.0
LYD1_k127_1563391_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 4.56e-251 780.0
LYD1_k127_1563391_3 Glycogen debranching enzyme - - - 6.978e-244 769.0
LYD1_k127_1563391_4 formate C-acetyltransferase activity K00656 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.3.1.54 6.863e-237 743.0
LYD1_k127_1563391_5 Starch synthase catalytic domain - - - 2.437e-199 628.0
LYD1_k127_1563391_6 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000414 612.0
LYD1_k127_1563391_7 glycyl-radical enzyme activating activity K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006189 302.0
LYD1_k127_1563391_8 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 293.0
LYD1_k127_1563391_9 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005541 276.0
LYD1_k127_159206_0 Domain of unknown function K03737 - 1.2.7.1 0.0 1823.0
LYD1_k127_159206_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.027e-220 700.0
LYD1_k127_159206_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 409.0
LYD1_k127_159206_3 Acyl-CoA reductase (LuxC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 345.0
LYD1_k127_159206_4 Isopentenyl transferase K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 327.0
LYD1_k127_159206_5 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 290.0
LYD1_k127_159206_6 Plasmid pRiA4b ORF-3-like protein - - - 0.0000000000000000000000003869 112.0
LYD1_k127_1610086_0 Carboxyl transferase domain - - - 1.447e-267 830.0
LYD1_k127_1610086_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775,K01929 - 5.1.1.1,6.3.2.10 2.049e-232 744.0
LYD1_k127_1610086_10 Protein of unknown function (DUF1573) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 317.0
LYD1_k127_1610086_11 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009761 306.0
LYD1_k127_1610086_12 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 299.0
LYD1_k127_1610086_13 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002456 271.0
LYD1_k127_1610086_14 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000956 277.0
LYD1_k127_1610086_15 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000209 275.0
LYD1_k127_1610086_16 ECF sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000001215 234.0
LYD1_k127_1610086_17 Crp Fnr family K21556 - - 0.00000000000000000000000000000000000000000000000000000000000000242 226.0
LYD1_k127_1610086_18 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000178 163.0
LYD1_k127_1610086_19 4Fe-4S binding domain - - - 0.000000000000000000000000001161 112.0
LYD1_k127_1610086_2 PFAM WD40-like beta Propeller - - - 4.37e-207 683.0
LYD1_k127_1610086_20 Biotin-requiring enzyme - - - 0.000000000000000000003297 96.0
LYD1_k127_1610086_21 transcriptional regulator - - - 0.00000000000000000005934 90.0
LYD1_k127_1610086_22 COG NOG23390 non supervised orthologous group - - - 0.0000000000001774 79.0
LYD1_k127_1610086_23 Outer membrane protein beta-barrel domain - - - 0.000000000000196 79.0
LYD1_k127_1610086_3 Carbon-nitrogen hydrolase K01950 - 6.3.5.1 4.992e-205 651.0
LYD1_k127_1610086_4 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 594.0
LYD1_k127_1610086_5 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004617 540.0
LYD1_k127_1610086_6 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 547.0
LYD1_k127_1610086_7 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 432.0
LYD1_k127_1610086_8 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 376.0
LYD1_k127_1610086_9 AhpC Tsa family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006255 320.0
LYD1_k127_1610612_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002775 425.0
LYD1_k127_1610612_1 Belongs to the DegT DnrJ EryC1 family K13010,K21328 - 2.6.1.102,2.6.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004693 300.0
LYD1_k127_1610612_2 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000008761 276.0
LYD1_k127_1610612_3 LmbE homologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000004069 243.0
LYD1_k127_1610612_4 helix_turn_helix, arabinose operon control protein - - - 0.0000001996 53.0
LYD1_k127_1610612_5 PFAM oxidoreductase domain protein - - - 0.0001209 45.0
LYD1_k127_1640481_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335,K18331 - 1.12.1.3,1.6.5.3 6.475e-319 983.0
LYD1_k127_1640481_1 peptidase K01278 - 3.4.14.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 374.0
LYD1_k127_1640481_2 COG4624 Iron only hydrogenase large subunit C-terminal domain K00123,K18332 - 1.12.1.3,1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000001078 266.0
LYD1_k127_1640481_3 Ferredoxin K17992 - 1.12.1.3 0.0000000000000000000000000000000000000000000000001285 179.0
LYD1_k127_16449_0 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 504.0
LYD1_k127_16449_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00651 GO:0003674,GO:0003824,GO:0008374,GO:0008899,GO:0016740,GO:0016746,GO:0016747,GO:0016748,GO:0016750 2.3.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 436.0
LYD1_k127_16449_10 - - - - 0.000001024 53.0
LYD1_k127_16449_11 - - - - 0.00005664 53.0
LYD1_k127_16449_12 Peptidase, M28 family - - - 0.0007732 53.0
LYD1_k127_16449_2 O-Methyltransferase K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000000000000005829 238.0
LYD1_k127_16449_3 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000258 190.0
LYD1_k127_16449_4 IPT/TIG domain - - - 0.0000000000000000000000000000000000000000000002142 181.0
LYD1_k127_16449_5 IPT/TIG domain - - - 0.00000000000000000000000000000000000000000004657 174.0
LYD1_k127_16449_6 Outer membrane protein beta-barrel domain - - - 0.0000000000000000002768 101.0
LYD1_k127_16449_7 - - - - 0.00000000000001206 83.0
LYD1_k127_16449_8 - - - - 0.0000000004651 63.0
LYD1_k127_1654662_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.399e-213 674.0
LYD1_k127_1654662_1 HlyD family secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001501 230.0
LYD1_k127_168158_0 mandelate racemase muconate lactonizing K08323 - 4.2.1.8 2.998e-235 733.0
LYD1_k127_168158_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 493.0
LYD1_k127_168158_2 of the RND superfamily K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 498.0
LYD1_k127_168158_3 Uncharacterised conserved protein (DUF2156) K14205 - 2.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 299.0
LYD1_k127_168158_4 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000000000000000000000008771 182.0
LYD1_k127_168158_5 growth of symbiont in host cell - - - 0.0000000000000000000000000000000000000009973 158.0
LYD1_k127_168158_6 - - - - 0.00000000000000000000001721 110.0
LYD1_k127_1710622_0 in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 413.0
LYD1_k127_1710622_1 Nodulation protein S (NodS) - - - 0.000000000000000000000119 106.0
LYD1_k127_1710622_2 - - - - 0.0009181 45.0
LYD1_k127_171509_0 Threonyl and Alanyl tRNA synthetase second additional domain K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 2.67e-321 992.0
LYD1_k127_171509_1 Glycosyl hydrolase family 3 N terminal domain - - - 1.949e-305 965.0
LYD1_k127_171509_10 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 412.0
LYD1_k127_171509_11 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008462 387.0
LYD1_k127_171509_12 PFAM peptidase T2 asparaginase 2 K01444,K13051 - 3.4.19.5,3.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 350.0
LYD1_k127_171509_13 P-loop ATPase protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005609 302.0
LYD1_k127_171509_14 Belongs to the DapB family K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000006834 265.0
LYD1_k127_171509_15 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007099 261.0
LYD1_k127_171509_16 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000007583 229.0
LYD1_k127_171509_17 Belongs to the helicase family. UvrD subfamily - - - 0.000000000000000000000000000000000000000000000000000000000007419 215.0
LYD1_k127_171509_18 PFAM Nucleotidyl transferase K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000258 208.0
LYD1_k127_171509_19 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000000000000007903 176.0
LYD1_k127_171509_2 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 1.295e-234 729.0
LYD1_k127_171509_20 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000001303 102.0
LYD1_k127_171509_21 amine dehydrogenase activity K19668,K20276 - 3.2.1.91 0.0000000000008341 78.0
LYD1_k127_171509_22 Recombinase - - - 0.0009163 43.0
LYD1_k127_171509_3 PFAM Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003857 600.0
LYD1_k127_171509_4 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003049 531.0
LYD1_k127_171509_5 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K13747 - 4.1.1.96 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 527.0
LYD1_k127_171509_6 Amino acid kinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 517.0
LYD1_k127_171509_7 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004388 496.0
LYD1_k127_171509_8 Cation transport protein K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004819 496.0
LYD1_k127_171509_9 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 467.0
LYD1_k127_1718878_0 Integrase core domain K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004738 248.0
LYD1_k127_1718878_1 Transposase K07483,K07497 - - 0.0000000000000000000000000000000001109 137.0
LYD1_k127_1771897_0 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 364.0
LYD1_k127_1771897_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006967 240.0
LYD1_k127_1771897_2 Bacterial virulence protein (VirJ) - - - 0.0000000000000000000000000000000000000000000000000000000000000001819 231.0
LYD1_k127_1771897_3 Bacterial virulence protein (VirJ) - - - 0.00000000000000000000000000000000000000000000678 168.0
LYD1_k127_1771897_4 - - - - 0.000000000001773 76.0
LYD1_k127_1771897_5 Subtilase family - - - 0.00008977 49.0
LYD1_k127_1791152_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1230.0
LYD1_k127_1791152_1 Hsp90 protein K04079 - - 1.767e-286 894.0
LYD1_k127_1791152_10 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009132 392.0
LYD1_k127_1791152_11 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 352.0
LYD1_k127_1791152_12 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007714 332.0
LYD1_k127_1791152_13 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 317.0
LYD1_k127_1791152_14 FES K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000669 284.0
LYD1_k127_1791152_15 Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0050896 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001439 275.0
LYD1_k127_1791152_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004086 256.0
LYD1_k127_1791152_17 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001292 243.0
LYD1_k127_1791152_18 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000287 236.0
LYD1_k127_1791152_19 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000001385 215.0
LYD1_k127_1791152_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 7.279e-262 813.0
LYD1_k127_1791152_20 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000003029 211.0
LYD1_k127_1791152_21 nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000001592 211.0
LYD1_k127_1791152_22 - - - - 0.0000000000000000000000000000000000004552 147.0
LYD1_k127_1791152_23 - - - - 0.00000000000000000000000000000004267 136.0
LYD1_k127_1791152_24 epimerase - - - 0.00000000000000000000000003698 109.0
LYD1_k127_1791152_25 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000002656 93.0
LYD1_k127_1791152_26 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000005193 71.0
LYD1_k127_1791152_27 - - - - 0.0000001555 59.0
LYD1_k127_1791152_28 - - - - 0.0002058 53.0
LYD1_k127_1791152_3 Belongs to the phosphoenolpyruvate carboxykinase (ATP) family K01610 GO:0000287,GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576 4.1.1.49 1.951e-237 744.0
LYD1_k127_1791152_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 524.0
LYD1_k127_1791152_5 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003923 519.0
LYD1_k127_1791152_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 495.0
LYD1_k127_1791152_7 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 400.0
LYD1_k127_1791152_8 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 384.0
LYD1_k127_1791152_9 Tyrosine recombinase XerC K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 367.0
LYD1_k127_1849845_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 382.0
LYD1_k127_1867418_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 8.203e-279 864.0
LYD1_k127_1867418_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.083e-230 720.0
LYD1_k127_1867418_10 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000005977 126.0
LYD1_k127_1867418_11 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000009539 119.0
LYD1_k127_1867418_12 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000004908 107.0
LYD1_k127_1867418_13 - - - - 0.000000001255 70.0
LYD1_k127_1867418_2 Sigma-54 interaction domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 559.0
LYD1_k127_1867418_3 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
LYD1_k127_1867418_4 PFAM GSCFA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005994 277.0
LYD1_k127_1867418_5 Serine aminopeptidase, S33 K01048 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000001172 234.0
LYD1_k127_1867418_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000004689 203.0
LYD1_k127_1867418_7 helix_turn_helix, mercury resistance K22491 - - 0.0000000000000000000000000000000000000000000000006947 186.0
LYD1_k127_1867418_8 Chaperonin 10 Kd subunit K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000001369 142.0
LYD1_k127_1867418_9 Lipopolysaccharide-assembly - - - 0.00000000000000000000000000000000000101 145.0
LYD1_k127_1890541_0 Belongs to the glycosyl hydrolase 43 family - - - 2.098e-305 943.0
LYD1_k127_1890541_1 Acetyl xylan esterase (AXE1) - - - 2.093e-240 764.0
LYD1_k127_1890541_10 CYTH - - - 0.000000000000000000000000000000000000000000000000000000000000006905 220.0
LYD1_k127_1890541_11 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000004683 202.0
LYD1_k127_1890541_12 Lysophospholipase l1-like esterase - - - 0.0000000000000000000000000000000593 134.0
LYD1_k127_1890541_13 - - - - 0.00000000000000000000000000001377 126.0
LYD1_k127_1890541_15 Carrier of the growing fatty acid chain in fatty acid biosynthesis - - - 0.0000005297 56.0
LYD1_k127_1890541_16 GDSL-like Lipase/Acylhydrolase - - - 0.000001698 59.0
LYD1_k127_1890541_2 Peptidase family M3 K01284 - 3.4.15.5 2.938e-235 747.0
LYD1_k127_1890541_3 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 595.0
LYD1_k127_1890541_4 Na dependent nucleoside transporter K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 516.0
LYD1_k127_1890541_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 398.0
LYD1_k127_1890541_6 COGs COG4299 conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 392.0
LYD1_k127_1890541_7 Membrane protein involved in D-alanine export - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 360.0
LYD1_k127_1890541_8 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002894 276.0
LYD1_k127_1890541_9 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000003046 253.0
LYD1_k127_1966598_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 386.0
LYD1_k127_1966598_1 LytTr DNA-binding domain K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 293.0
LYD1_k127_1966598_2 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005129 259.0
LYD1_k127_1966598_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000001067 213.0
LYD1_k127_1966598_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000001015 203.0
LYD1_k127_198617_0 Concanavalin A-like lectin/glucanases superfamily K01190 - 3.2.1.23 0.0 1543.0
LYD1_k127_198617_1 Insulinase (Peptidase family M16) K07263 - - 0.0 1029.0
LYD1_k127_198617_2 Peptidase M1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 426.0
LYD1_k127_1989767_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.0 1064.0
LYD1_k127_1989767_1 SIS domain K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 7.398e-266 830.0
LYD1_k127_1989767_10 PFAM Bacterial transferase hexapeptide (three repeats) K13018 - 2.3.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007885 319.0
LYD1_k127_1989767_11 proteins, homologs of microcin C7 resistance protein MccF K01297 - 3.4.17.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002059 281.0
LYD1_k127_1989767_12 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000001731 201.0
LYD1_k127_1989767_13 sporulation - - - 0.0000000000000000000000000000000000000000005709 170.0
LYD1_k127_1989767_14 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000001857 158.0
LYD1_k127_1989767_2 Psort location Cytoplasmic, score 8.96 - - - 1.036e-241 764.0
LYD1_k127_1989767_3 Male sterility protein K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 548.0
LYD1_k127_1989767_4 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002008 485.0
LYD1_k127_1989767_5 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 475.0
LYD1_k127_1989767_6 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 473.0
LYD1_k127_1989767_7 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 395.0
LYD1_k127_1989767_8 Starch synthase, catalytic domain K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 382.0
LYD1_k127_1989767_9 CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 361.0
LYD1_k127_2043039_0 FAD linked oxidases, C-terminal domain - - - 0.0 1130.0
LYD1_k127_2043039_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 615.0
LYD1_k127_2043039_10 PFAM FAD linked oxidase domain protein K00803 - 2.5.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008756 392.0
LYD1_k127_2043039_11 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004058 380.0
LYD1_k127_2043039_12 phosphate butyryltransferase K00634 - 2.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 351.0
LYD1_k127_2043039_13 MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005466 280.0
LYD1_k127_2043039_14 hydrolase, carbon-nitrogen family K13566 - 3.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003251 274.0
LYD1_k127_2043039_15 ABC-type phosphate transport system periplasmic K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007551 278.0
LYD1_k127_2043039_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001365 250.0
LYD1_k127_2043039_17 helix_turn_helix ASNC type K03718 - - 0.0000000000000000000000000000000000000000000000000000000001831 206.0
LYD1_k127_2043039_18 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.0000000000000000000000000000000000000000000000000000000002453 211.0
LYD1_k127_2043039_19 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000005285 209.0
LYD1_k127_2043039_2 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006682 599.0
LYD1_k127_2043039_20 PFAM Tetratricopeptide - - - 0.00000000000000000000000000000000000000000000006574 192.0
LYD1_k127_2043039_21 Beta-eliminating lyase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000006786 169.0
LYD1_k127_2043039_22 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000009299 163.0
LYD1_k127_2043039_23 PFAM Biopolymer transport protein ExbD TolR - - - 0.000000000000000000000000000000000000001044 155.0
LYD1_k127_2043039_24 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000000000000000004405 151.0
LYD1_k127_2043039_25 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000008615 119.0
LYD1_k127_2043039_26 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000002137 103.0
LYD1_k127_2043039_27 long-chain fatty acid transport protein - - - 0.00000000000000000003198 98.0
LYD1_k127_2043039_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008329 501.0
LYD1_k127_2043039_4 Phosphate acetyl/butaryl transferase K00625,K13788 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 475.0
LYD1_k127_2043039_5 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102,K11103 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006874 452.0
LYD1_k127_2043039_6 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 443.0
LYD1_k127_2043039_7 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00226,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 433.0
LYD1_k127_2043039_8 Belongs to the acetokinase family K00929 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0044237,GO:0044424,GO:0044464,GO:0047761 2.7.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 431.0
LYD1_k127_2043039_9 phosphate butyryltransferase K00634 - 2.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009721 406.0
LYD1_k127_2061480_0 COG COG3547 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 325.0
LYD1_k127_2061480_1 Transposase K07491 - - 0.00000000000000000000000000000000000000000006293 162.0
LYD1_k127_2061480_2 - - - - 0.000001651 55.0
LYD1_k127_2085562_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1187.0
LYD1_k127_2085562_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1019.0
LYD1_k127_2085562_10 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 455.0
LYD1_k127_2085562_11 Ribosomal Proteins L2, C-terminal domain K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 438.0
LYD1_k127_2085562_12 type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006302 451.0
LYD1_k127_2085562_13 TIGRFAM gliding motility-associated protein GldE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 432.0
LYD1_k127_2085562_14 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 417.0
LYD1_k127_2085562_15 H gluconate symporter and related K06155 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 409.0
LYD1_k127_2085562_16 Putative serine dehydratase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 395.0
LYD1_k127_2085562_17 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 376.0
LYD1_k127_2085562_18 OmpA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008749 375.0
LYD1_k127_2085562_19 metallocarboxypeptidase activity K06987,K07752 - 3.4.17.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 370.0
LYD1_k127_2085562_2 Elongation factor G, domain IV K02355 - - 2.164e-311 968.0
LYD1_k127_2085562_20 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 353.0
LYD1_k127_2085562_21 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 314.0
LYD1_k127_2085562_22 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000883 321.0
LYD1_k127_2085562_23 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 312.0
LYD1_k127_2085562_24 ribosomal L5P family C-terminus K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 289.0
LYD1_k127_2085562_25 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 291.0
LYD1_k127_2085562_26 Ribosomal protein L3 K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 290.0
LYD1_k127_2085562_27 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 282.0
LYD1_k127_2085562_28 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001461 260.0
LYD1_k127_2085562_29 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000001031 246.0
LYD1_k127_2085562_3 DNA helicase K03657 - 3.6.4.12 2.038e-274 863.0
LYD1_k127_2085562_30 Ribosomal protein S7p/S5e K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000004725 240.0
LYD1_k127_2085562_31 Ribosomal protein S12/S23 K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000001638 236.0
LYD1_k127_2085562_32 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000006305 244.0
LYD1_k127_2085562_33 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000000000000005078 228.0
LYD1_k127_2085562_34 - - - - 0.0000000000000000000000000000000000000000000000000000000000000012 228.0
LYD1_k127_2085562_35 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) K07094 - - 0.00000000000000000000000000000000000000000000000000000000000000167 226.0
LYD1_k127_2085562_36 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000008629 217.0
LYD1_k127_2085562_37 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000102 215.0
LYD1_k127_2085562_38 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000003755 212.0
LYD1_k127_2085562_39 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000001278 205.0
LYD1_k127_2085562_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 3.17e-212 665.0
LYD1_k127_2085562_40 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000001251 217.0
LYD1_k127_2085562_41 50S ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001403 199.0
LYD1_k127_2085562_42 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000008986 194.0
LYD1_k127_2085562_43 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000001717 194.0
LYD1_k127_2085562_44 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001524 186.0
LYD1_k127_2085562_45 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000072 190.0
LYD1_k127_2085562_46 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000002784 177.0
LYD1_k127_2085562_47 Gliding motility-associated lipoprotein GldD - - - 0.000000000000000000000000000000000000000000000002501 180.0
LYD1_k127_2085562_48 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000002039 186.0
LYD1_k127_2085562_49 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000000000002164 164.0
LYD1_k127_2085562_5 Belongs to the UbiD family K03182 - 4.1.1.98 1.551e-209 668.0
LYD1_k127_2085562_50 H gluconate symporter and related K06155 - - 0.0000000000000000000000000000000000000000001301 161.0
LYD1_k127_2085562_51 bacterial (prokaryotic) histone like domain K03530 - - 0.0000000000000000000000000000000000000000003251 159.0
LYD1_k127_2085562_52 Single-stranded DNA-binding protein K03111 - - 0.000000000000000000000000000000000000000003212 159.0
LYD1_k127_2085562_53 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000001554 148.0
LYD1_k127_2085562_54 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000009169 146.0
LYD1_k127_2085562_55 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000001504 147.0
LYD1_k127_2085562_56 Translation initiation factor 1A / IF-1 K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00000000000000000000000000000000000001678 144.0
LYD1_k127_2085562_57 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000005048 143.0
LYD1_k127_2085562_58 Belongs to the P-Pant transferase superfamily - - - 0.00000000000000000000000000000000002477 142.0
LYD1_k127_2085562_59 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000005322 141.0
LYD1_k127_2085562_6 SecY translocase K03076 - - 9.867e-200 630.0
LYD1_k127_2085562_60 COG NOG19114 non supervised orthologous group - - - 0.00000000000000000000000000000000009428 135.0
LYD1_k127_2085562_61 Domain of unknown function (DUF4870) K09940 - - 0.000000000000000000000000001839 115.0
LYD1_k127_2085562_63 Ribosomal protein L30 K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000131 86.0
LYD1_k127_2085562_64 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000009904 81.0
LYD1_k127_2085562_66 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000000961 71.0
LYD1_k127_2085562_67 Thiamin pyrophosphokinase, catalytic domain K00949 - 2.7.6.2 0.0000000000001122 73.0
LYD1_k127_2085562_68 - - - - 0.000001943 49.0
LYD1_k127_2085562_7 S1 RNA binding domain protein K08301 - - 6.062e-199 632.0
LYD1_k127_2085562_8 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 612.0
LYD1_k127_2085562_9 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 542.0
LYD1_k127_2121912_0 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007999 409.0
LYD1_k127_2121912_1 Glycoside Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 311.0
LYD1_k127_2121912_2 Domain of unknown function (DUF4251) - - - 0.0000000002027 68.0
LYD1_k127_2155411_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 552.0
LYD1_k127_2185881_0 Ribonucleotide reductase, barrel domain K00525 - 1.17.4.1 0.0 1297.0
LYD1_k127_2185881_1 Psort location OuterMembrane, score - - - 0.0 1068.0
LYD1_k127_2185881_10 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 371.0
LYD1_k127_2185881_11 CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007923 300.0
LYD1_k127_2185881_12 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002518 275.0
LYD1_k127_2185881_13 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001294 248.0
LYD1_k127_2185881_14 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000001316 250.0
LYD1_k127_2185881_15 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002661 246.0
LYD1_k127_2185881_16 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000008568 220.0
LYD1_k127_2185881_17 6-O-methylguanine DNA methyltransferase, DNA binding domain protein K00567,K07443 - 2.1.1.63 0.0000000000000000000000000000000000000000001059 162.0
LYD1_k127_2185881_18 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000000000000144 153.0
LYD1_k127_2185881_19 Gliding motility-associated lipoprotein, GldH - GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0017144,GO:0040011,GO:0042737,GO:0043170,GO:0044237,GO:0044248,GO:0046348,GO:0048870,GO:0051179,GO:0051674,GO:0071704,GO:0071976,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000003015 138.0
LYD1_k127_2185881_2 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 3.362e-204 640.0
LYD1_k127_2185881_20 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000001371 121.0
LYD1_k127_2185881_21 NifU-like domain - - - 0.000000000000000000000003774 103.0
LYD1_k127_2185881_3 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 593.0
LYD1_k127_2185881_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 482.0
LYD1_k127_2185881_5 Psort location Cytoplasmic, score 8.96 K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 421.0
LYD1_k127_2185881_6 PSP1 C-terminal domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005147 417.0
LYD1_k127_2185881_7 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 408.0
LYD1_k127_2185881_8 DNA polymerase III K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 386.0
LYD1_k127_2185881_9 acyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 372.0
LYD1_k127_222686_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000708 580.0
LYD1_k127_222686_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 526.0
LYD1_k127_222686_2 PFAM RagB SusD K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000987 418.0
LYD1_k127_222686_3 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 383.0
LYD1_k127_2358466_0 Hsp90 protein K04079 - - 4.607e-291 907.0
LYD1_k127_2358466_1 Phosphoenolpyruvate carboxykinase K01610 GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0019318,GO:0019319,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0071704,GO:1901576 4.1.1.49 3.384e-242 758.0
LYD1_k127_2358466_10 - - - - 0.0000000000000000000000000000002113 128.0
LYD1_k127_2358466_2 PFAM RNA-directed DNA polymerase (Reverse transcriptase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 580.0
LYD1_k127_2358466_3 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 512.0
LYD1_k127_2358466_4 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 350.0
LYD1_k127_2358466_5 Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0050896 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001688 278.0
LYD1_k127_2358466_6 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000003059 241.0
LYD1_k127_2358466_7 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000004414 211.0
LYD1_k127_2358466_8 nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000004631 203.0
LYD1_k127_2358466_9 - - - - 0.0000000000000000000000000000000000000127 150.0
LYD1_k127_238912_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 358.0
LYD1_k127_238912_1 Protein of unknown function (DUF3419) K13622 - - 0.000000000000094 74.0
LYD1_k127_240042_0 TonB-dependent receptor plug domain K02014 - - 8.802e-255 809.0
LYD1_k127_240042_1 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003881 301.0
LYD1_k127_240042_2 nicotinamide mononucleotide transporter K03811 - - 0.000000000000000000000000000000000000000000000000000113 193.0
LYD1_k127_2424092_0 ABC-2 type transporter - - - 6.769e-238 770.0
LYD1_k127_2424092_1 PFAM Y_Y_Y domain - - - 7.853e-206 685.0
LYD1_k127_2424092_2 SpoIIE domain protein K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 441.0
LYD1_k127_2424092_3 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.00000000000000000000000000000000000000000000000026 184.0
LYD1_k127_2424092_4 sigma factor antagonist activity K04757 - 2.7.11.1 0.000000000000000000000002013 107.0
LYD1_k127_2424092_5 Belongs to the anti-sigma-factor antagonist family - - - 0.000000000000000005895 87.0
LYD1_k127_2434905_0 X-Pro dipeptidyl-peptidase (S15 family) - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 4.279e-213 681.0
LYD1_k127_2434905_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 537.0
LYD1_k127_2434905_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 385.0
LYD1_k127_2434905_3 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000002671 220.0
LYD1_k127_2434905_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000005497 152.0
LYD1_k127_2434905_5 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000000000000000000000000000000001097 144.0
LYD1_k127_2434905_6 Belongs to the ClpS family K06891 - - 0.00000000000000000005474 92.0
LYD1_k127_2434905_7 nuclear chromosome segregation - - - 0.00000000000006916 85.0
LYD1_k127_2434905_8 Yip1 domain - - - 0.0000002742 59.0
LYD1_k127_246402_0 Phosphoesterase family - - - 0.0 1360.0
LYD1_k127_246402_1 TonB dependent receptor - - - 0.0 1247.0
LYD1_k127_246402_10 TIR domain - - - 0.000000000000000000001319 106.0
LYD1_k127_246402_11 methyltransferase - - - 0.000000000000000001608 91.0
LYD1_k127_246402_12 SPTR NmrA family protein - - - 0.000000006912 59.0
LYD1_k127_246402_13 Leucine carboxyl methyltransferase - - - 0.0004135 46.0
LYD1_k127_246402_2 Pfam:SusD K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 500.0
LYD1_k127_246402_3 serine-type peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 406.0
LYD1_k127_246402_4 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 388.0
LYD1_k127_246402_5 NAD(P)H dehydrogenase (quinone) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003003 378.0
LYD1_k127_246402_6 Protein of unknown function (DUF998) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000271 280.0
LYD1_k127_246402_7 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000003873 154.0
LYD1_k127_246402_8 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000001572 132.0
LYD1_k127_246402_9 Leucine carboxyl methyltransferase - - - 0.0000000000000000000000000000003322 124.0
LYD1_k127_2555319_0 L-rhamnose isomerase activity K00848,K01813 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0008270,GO:0008740,GO:0009056,GO:0009987,GO:0016043,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0019321,GO:0019324,GO:0022607,GO:0030145,GO:0030246,GO:0032991,GO:0033296,GO:0036094,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0046872,GO:0046914,GO:0048029,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901575 2.7.1.5,5.3.1.14 7.998e-210 658.0
LYD1_k127_2555319_1 Carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005418 498.0
LYD1_k127_2555319_2 L-rhamnose-proton symport protein (RhaT) K02856 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004989 472.0
LYD1_k127_2555319_3 Involved in the anomeric conversion of L-rhamnose K03534 - 5.1.3.32 0.000000000000000000000000000000000000000001687 157.0
LYD1_k127_2555319_4 VTC domain - - - 0.00000000000000000000000000000000306 135.0
LYD1_k127_2555319_5 COG3209 Rhs family protein - - - 0.0004761 48.0
LYD1_k127_257580_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 311.0
LYD1_k127_257580_1 Thioredoxin - - - 0.000000000000000000000000000000001553 136.0
LYD1_k127_257580_2 - - - - 0.00000008204 61.0
LYD1_k127_257580_3 Protein of unknown function (DUF2752) - - - 0.00002967 53.0
LYD1_k127_2581074_0 Glycosyl hydrolase, family 15 K01178 - 3.2.1.3 5.202e-258 807.0
LYD1_k127_2581074_1 Glycosyltransferase family 20 K00697,K13057,K20436 - 2.4.1.15,2.4.1.245,2.4.1.347,2.5.1.135 3.897e-232 740.0
LYD1_k127_2581074_2 Fibronectin type III-like domain K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 593.0
LYD1_k127_2581074_3 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005329 547.0
LYD1_k127_2581074_4 Trehalose-phosphatase K16055 - 2.4.1.15,3.1.3.12 0.000000000000000000000000000000000000000000000000000000000000001556 226.0
LYD1_k127_2581074_5 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000001018 202.0
LYD1_k127_2581074_6 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000004136 192.0
LYD1_k127_2581074_7 Nitroreductase family - - - 0.00000000000000000000000000000000009467 141.0
LYD1_k127_2581074_8 - - - - 0.0000000000000000000000000001904 124.0
LYD1_k127_2581868_0 PFAM Integrase catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 422.0
LYD1_k127_2581868_1 DNA-dependent DNA replication - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009 287.0
LYD1_k127_2581868_2 AAA ATPase domain K06921 - - 0.00003064 52.0
LYD1_k127_25825_0 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.0 1299.0
LYD1_k127_25825_1 Pyruvate formate lyase-like K00656,K18427 - 2.3.1.54,4.1.1.83 0.0 1162.0
LYD1_k127_25825_10 Putative Fe-S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 567.0
LYD1_k127_25825_11 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 516.0
LYD1_k127_25825_12 Iron hydrogenase small subunit K00123,K00336,K18332 - 1.12.1.3,1.17.1.9,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 493.0
LYD1_k127_25825_13 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 482.0
LYD1_k127_25825_14 Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate K03473 - 1.1.1.290 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002424 452.0
LYD1_k127_25825_15 Hydroxypyruvate reductase K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 452.0
LYD1_k127_25825_16 C-terminal region of band_7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007919 430.0
LYD1_k127_25825_17 Alcohol dehydrogenase GroES-like domain K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 417.0
LYD1_k127_25825_18 Putative Fe-S cluster K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008193 364.0
LYD1_k127_25825_19 COGs COG2610 H gluconate symporter and related permease K03299 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 352.0
LYD1_k127_25825_2 Domain of Unknown Function (DUF1080) - - - 1.923e-293 937.0
LYD1_k127_25825_20 7TM diverse intracellular signalling - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 357.0
LYD1_k127_25825_21 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 340.0
LYD1_k127_25825_22 PFAM KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 329.0
LYD1_k127_25825_23 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007727 317.0
LYD1_k127_25825_24 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 312.0
LYD1_k127_25825_25 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000002643 264.0
LYD1_k127_25825_26 Ser Thr phosphatase family protein K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000004727 249.0
LYD1_k127_25825_27 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000471 206.0
LYD1_k127_25825_28 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K17999 - 1.12.1.4,1.6.5.3 0.0000000000000000000000000000000000001204 146.0
LYD1_k127_25825_29 Nudix hydrolase K03574 - 3.6.1.55 0.0000000000000000000000000000000000009045 144.0
LYD1_k127_25825_3 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 1.206e-224 710.0
LYD1_k127_25825_30 Protein of unknown function DUF45 K07043 - - 0.0000000000000000000000000000000001132 141.0
LYD1_k127_25825_31 COG5016 Pyruvate oxaloacetate carboxyltransferase K01960 - 6.4.1.1 0.00000000000000000000000000002962 120.0
LYD1_k127_25825_32 NfeD-like C-terminal, partner-binding - - - 0.0000000000000000000000000005855 120.0
LYD1_k127_25825_33 Cytidylate kinase-like family - - - 0.00000000000000000000000008037 117.0
LYD1_k127_25825_34 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.0000000000000001978 81.0
LYD1_k127_25825_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 1.517e-220 689.0
LYD1_k127_25825_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K05587,K18331 - 1.12.1.3,1.6.5.3 1.121e-215 687.0
LYD1_k127_25825_6 Beta-Casp domain K07576 - - 4.495e-204 644.0
LYD1_k127_25825_7 Psort location Cytoplasmic, score K00027,K00029 - 1.1.1.38,1.1.1.40 5.09e-201 633.0
LYD1_k127_25825_8 alpha-L-fucosidase K01206 - 3.2.1.51 7.516e-199 631.0
LYD1_k127_25825_9 Transporter gate domain protein K06373 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 561.0
LYD1_k127_2623052_0 Motility related/secretion protein - - - 0.0 2465.0
LYD1_k127_2623052_1 PFAM Glycoside hydrolase family 65, central catalytic K00691 - 2.4.1.8 1.389e-282 883.0
LYD1_k127_2623052_2 Major facilitator Superfamily K16211 - - 1.841e-197 627.0
LYD1_k127_2623052_3 Radical SAM K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 460.0
LYD1_k127_2623052_4 Belongs to the PdxA family K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005313 450.0
LYD1_k127_2623052_5 Cytosol aminopeptidase family, catalytic domain K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 400.0
LYD1_k127_2623052_6 PFAM Haloacid dehalogenase domain protein hydrolase K01838 - 5.4.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000003387 261.0
LYD1_k127_2623052_7 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000003837 228.0
LYD1_k127_2623052_8 mttA/Hcf106 family K03116 - - 0.00000000003861 64.0
LYD1_k127_262768_0 Psort location Cytoplasmic, score 8.96 K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 341.0
LYD1_k127_262768_1 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 312.0
LYD1_k127_262768_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001523 271.0
LYD1_k127_262768_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001313 261.0
LYD1_k127_262768_4 Domain of unknown function (DUF386) - - - 0.0000000000000000000000000000000000000008351 155.0
LYD1_k127_264330_0 Belongs to the glycosyl hydrolase 32 family K03332 - 3.2.1.80 2.651e-197 628.0
LYD1_k127_264330_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 497.0
LYD1_k127_264330_2 Domain of unknown function (DUF5009) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007194 437.0
LYD1_k127_264330_3 Belongs to the glycosyl hydrolase 13 family K07214 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 383.0
LYD1_k127_264330_4 heptosyltransferase K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009704 301.0
LYD1_k127_264330_5 ADP-heptose-lipopolysaccharide heptosyltransferase activity - - - 0.00000000000000000000000000000000000000000000009769 171.0
LYD1_k127_26517_0 Aldo Keto reductase - - - 1.26e-199 634.0
LYD1_k127_26517_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 554.0
LYD1_k127_26517_10 Sporulation related domain - - - 0.0001799 49.0
LYD1_k127_26517_11 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0004585 44.0
LYD1_k127_26517_2 Peptidase C1-like family K01372 - 3.4.22.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 516.0
LYD1_k127_26517_3 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 497.0
LYD1_k127_26517_4 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 366.0
LYD1_k127_26517_5 PFAM Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006068 336.0
LYD1_k127_26517_6 COGs COG5616 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000653 315.0
LYD1_k127_26517_7 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005527 271.0
LYD1_k127_26517_8 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000004504 179.0
LYD1_k127_26517_9 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000008332 115.0
LYD1_k127_275187_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1294.0
LYD1_k127_275187_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003757 503.0
LYD1_k127_275187_2 TIGRFAM efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family K18139,K18300 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 417.0
LYD1_k127_275187_3 Biotin-lipoyl like K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 367.0
LYD1_k127_275187_4 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 357.0
LYD1_k127_275187_5 Cupin domain - - - 0.0000000000000000000000000000000001373 136.0
LYD1_k127_275187_6 Transcriptional regulator, HxlR family - - - 0.0000000000000000000000000000000001793 136.0
LYD1_k127_275187_7 - - - - 0.00000000000000000000000000008655 119.0
LYD1_k127_2756298_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 2.817e-271 840.0
LYD1_k127_2756298_1 Sugar (and other) transporter K02100 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 402.0
LYD1_k127_2756298_2 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 371.0
LYD1_k127_2756298_3 N-acetylglucosaminylinositol deacetylase activity - - - 0.0000000000000000000000000000000000000000000000000000003592 203.0
LYD1_k127_2756298_4 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000004673 175.0
LYD1_k127_2795318_0 Mannitol dehydrogenase C-terminal domain K00009,K00040,K00041,K00045 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006063,GO:0006082,GO:0008150,GO:0008152,GO:0009026,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 1.1.1.17,1.1.1.57,1.1.1.58,1.1.1.67 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 503.0
LYD1_k127_2795318_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852,K18478 - 2.7.1.15,2.7.1.184,2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 292.0
LYD1_k127_2795318_2 acid phosphatase activity - - - 0.00000000000000000000000000000000000000000000000008214 198.0
LYD1_k127_2795318_3 CotH kinase protein K06330 - - 0.0000000000000000000000000000000000000000000005803 183.0
LYD1_k127_2795318_4 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K01919,K03072,K12257 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 6.3.2.2 0.0000000000000000000000002377 116.0
LYD1_k127_2796321_0 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02484,K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 591.0
LYD1_k127_2796321_1 permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 410.0
LYD1_k127_2796321_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 398.0
LYD1_k127_2796321_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 396.0
LYD1_k127_2796321_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 297.0
LYD1_k127_2796321_5 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006633 273.0
LYD1_k127_2796321_6 PhoU domain K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000002028 237.0
LYD1_k127_2796321_7 long-chain fatty acid transport protein K06076 - - 0.0000001824 58.0
LYD1_k127_2803237_0 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 608.0
LYD1_k127_2803237_1 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000386 557.0
LYD1_k127_2803237_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 407.0
LYD1_k127_2803237_3 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 328.0
LYD1_k127_2803237_4 COGs COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008246 287.0
LYD1_k127_2803237_5 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000001096 259.0
LYD1_k127_2803237_6 TIGRFAM Bacteroidetes-specific - - - 0.0000000000000000000000000000000000000000000000000000001373 207.0
LYD1_k127_2803237_7 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000007701 207.0
LYD1_k127_2803237_8 - - - - 0.000455 49.0
LYD1_k127_2803318_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 4.028e-264 827.0
LYD1_k127_2803318_1 NADH dehydrogenase K00342 - 1.6.5.3 1.781e-217 684.0
LYD1_k127_2803318_10 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000001601 158.0
LYD1_k127_2803318_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000001149 144.0
LYD1_k127_2803318_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 538.0
LYD1_k127_2803318_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 492.0
LYD1_k127_2803318_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004322 392.0
LYD1_k127_2803318_5 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006774 312.0
LYD1_k127_2803318_6 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003251 268.0
LYD1_k127_2803318_7 Peptidase, S54 family K09650 - 3.4.21.105 0.000000000000000000000000000000000000000000000000000000000000000000000000000228 261.0
LYD1_k127_2803318_8 endonuclease exonuclease phosphatase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002104 260.0
LYD1_k127_2803318_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000008939 178.0
LYD1_k127_2815341_0 Bacterial alpha-L-rhamnosidase C-terminal domain K05989 - 3.2.1.40 6.196e-223 707.0
LYD1_k127_2815341_1 Beta-galactosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005234 443.0
LYD1_k127_2828684_0 Calcium-translocating P-type ATPase, PMCA-type K01537 - 3.6.3.8 0.0 1065.0
LYD1_k127_2828684_1 usher protein - - - 9.17e-288 924.0
LYD1_k127_2828684_10 ergosterol biosynthetic process K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 395.0
LYD1_k127_2828684_11 PFAM Glycoside hydrolase, family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 380.0
LYD1_k127_2828684_12 protein conserved in bacteria (DUF2179) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009322 332.0
LYD1_k127_2828684_13 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 321.0
LYD1_k127_2828684_14 Chaperone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002138 300.0
LYD1_k127_2828684_15 Protein of unknown function (DUF3078) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007436 299.0
LYD1_k127_2828684_16 phosphatidylcholine synthase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005877 261.0
LYD1_k127_2828684_17 Permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001091 255.0
LYD1_k127_2828684_18 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001313 248.0
LYD1_k127_2828684_19 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000000000000000000000000005251 192.0
LYD1_k127_2828684_2 Bacterial protein of unknown function (DUF853) K06915 - - 9.546e-237 741.0
LYD1_k127_2828684_20 rRNA binding - - - 0.0000000000000000000000000000000000000000002782 160.0
LYD1_k127_2828684_21 Domain of unknown function (DUF4402) - - - 0.000000000000000000000000000000000000002003 152.0
LYD1_k127_2828684_22 Domain of unknown function (DUF1508) K09946 - - 0.00000000000000000000000000001574 121.0
LYD1_k127_2828684_23 - - - - 0.000000000000000000000000008176 116.0
LYD1_k127_2828684_24 Bacterial PH domain K08981 - - 0.0000000000000000000000003836 108.0
LYD1_k127_2828684_26 Domain of unknown function (DUF4402) - - - 0.0000000005468 67.0
LYD1_k127_2828684_27 - - - - 0.000000002194 60.0
LYD1_k127_2828684_28 - - - - 0.00001795 48.0
LYD1_k127_2828684_29 Domain of unknown function (DUF4402) - - - 0.0000917 51.0
LYD1_k127_2828684_3 Flavin containing amine oxidoreductase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 587.0
LYD1_k127_2828684_4 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005425 563.0
LYD1_k127_2828684_5 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 561.0
LYD1_k127_2828684_6 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 537.0
LYD1_k127_2828684_7 Major Facilitator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009006 489.0
LYD1_k127_2828684_8 COG3209 Rhs family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 496.0
LYD1_k127_2828684_9 Domain of unknown function (DUF4372) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 420.0
LYD1_k127_2828844_0 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000000002688 229.0
LYD1_k127_2828844_1 TIR domain - - - 0.00000000677 62.0
LYD1_k127_2844312_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 1.345e-207 652.0
LYD1_k127_2844312_1 Catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 529.0
LYD1_k127_2844312_10 domain protein K07154 - 2.7.11.1 0.0000000000000000000000000000000000000005243 150.0
LYD1_k127_2844312_11 Domain of unknown function (DUF1987) - - - 0.00000000000000000000001878 106.0
LYD1_k127_2844312_12 transcriptional regulator, y4mF family - - - 0.00000000000000000000127 96.0
LYD1_k127_2844312_13 GIY-YIG catalytic domain K07461 - - 0.000000000002251 68.0
LYD1_k127_2844312_14 - - - - 0.00000000004904 66.0
LYD1_k127_2844312_2 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 432.0
LYD1_k127_2844312_3 Pfam:HipA_N K07154 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 426.0
LYD1_k127_2844312_4 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 348.0
LYD1_k127_2844312_5 PFAM Stage II sporulation protein E (SpoIIE) K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 324.0
LYD1_k127_2844312_6 Elongation factor P (EF-P) OB domain K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001935 265.0
LYD1_k127_2844312_7 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008023 251.0
LYD1_k127_2844312_8 Universal bacterial protein YeaZ K14742 - - 0.000000000000000000000000000000000000000000000000000000000005984 214.0
LYD1_k127_2844312_9 Colicin V production protein K03558 - - 0.0000000000000000000000000000000000000001103 156.0
LYD1_k127_285396_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 1.028e-227 713.0
LYD1_k127_285396_1 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 456.0
LYD1_k127_285396_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002654 276.0
LYD1_k127_285396_3 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000167 176.0
LYD1_k127_285396_4 - - - - 0.00008333 51.0
LYD1_k127_2872320_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 344.0
LYD1_k127_2872320_1 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000625 217.0
LYD1_k127_2872320_2 PQQ enzyme repeat - - - 0.00004156 46.0
LYD1_k127_2877498_0 Translation-initiation factor 2 K02519 - - 0.0 1134.0
LYD1_k127_2877498_1 Participates in both transcription termination and antitermination K02600 - - 1.676e-216 677.0
LYD1_k127_2877498_10 acid phosphatase activity K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000001249 168.0
LYD1_k127_2877498_11 - - - - 0.000000000000000000000000000000000000004461 149.0
LYD1_k127_2877498_12 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000002564 128.0
LYD1_k127_2877498_13 - - - - 0.000000000001919 78.0
LYD1_k127_2877498_2 Belongs to the glycosyl hydrolase 13 family K21575 - 3.2.1.135 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008597 475.0
LYD1_k127_2877498_3 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 344.0
LYD1_k127_2877498_4 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 308.0
LYD1_k127_2877498_5 smart pdz dhr glgf - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001477 284.0
LYD1_k127_2877498_6 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001099 281.0
LYD1_k127_2877498_7 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000005686 263.0
LYD1_k127_2877498_8 serine-type aminopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000005172 231.0
LYD1_k127_2877498_9 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000000000000001232 194.0
LYD1_k127_2887620_0 DNA polymerase alpha chain like domain K02337 - 2.7.7.7 0.0 1230.0
LYD1_k127_2887620_1 gtp-binding protein typa K06207 - - 2.186e-276 860.0
LYD1_k127_2887620_10 TIGRFAM TIGR02453 family protein - - - 0.00000000000000000000000000002631 121.0
LYD1_k127_2887620_11 Domain of unknown function (DUF4252) - - - 0.00000000000000000000000003183 115.0
LYD1_k127_2887620_12 - - - - 0.00000000000000002042 89.0
LYD1_k127_2887620_13 Bacterial protein of unknown function (YtfJ_HI0045) K07109 - - 0.0000000000000004014 85.0
LYD1_k127_2887620_14 Domain of unknown function (DUF4252) - - - 0.000000000000002667 82.0
LYD1_k127_2887620_15 - - - - 0.000002178 49.0
LYD1_k127_2887620_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 7.781e-232 738.0
LYD1_k127_2887620_3 impB/mucB/samB family K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 534.0
LYD1_k127_2887620_4 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 531.0
LYD1_k127_2887620_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 343.0
LYD1_k127_2887620_6 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 332.0
LYD1_k127_2887620_7 Protease prsW family - - - 0.0000000000000000000000000000000000000000000000000000000000000000009469 235.0
LYD1_k127_2887620_8 FAD linked oxidase domain protein K00803,K11472 - 2.5.1.26 0.00000000000000000000000000000000000000000006513 167.0
LYD1_k127_2887620_9 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000315 128.0
LYD1_k127_2903353_0 PFAM WD domain, G-beta repeat - - - 2.794e-198 655.0
LYD1_k127_2907951_0 Queuosine biosynthesis protein K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 598.0
LYD1_k127_2907951_1 COG0115 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 487.0
LYD1_k127_2907951_10 Psort location CytoplasmicMembrane, score 9.82 - - - 0.00000000000000000000000000002383 118.0
LYD1_k127_2907951_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002608 412.0
LYD1_k127_2907951_3 cell adhesion K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 336.0
LYD1_k127_2907951_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008475 279.0
LYD1_k127_2907951_5 FtsX-like permease family K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003745 278.0
LYD1_k127_2907951_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000002607 266.0
LYD1_k127_2907951_7 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000003966 234.0
LYD1_k127_2907951_8 Two component regulator propeller - - - 0.00000000000000000000000000000009732 136.0
LYD1_k127_2907951_9 domain, Protein K20276 - - 0.0000000000000000000000000000001503 144.0
LYD1_k127_2910925_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 4.78e-316 983.0
LYD1_k127_2910925_1 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 593.0
LYD1_k127_2910925_2 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 550.0
LYD1_k127_2910925_3 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 528.0
LYD1_k127_2910925_4 Trehalose utilisation K09992 - - 0.000000000000000000000000000000000000000000000000000000001263 208.0
LYD1_k127_2910925_5 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000007796 98.0
LYD1_k127_2910925_6 Unextendable partial coding region - - - 0.0000000004695 60.0
LYD1_k127_2910925_8 - - - - 0.000000236 52.0
LYD1_k127_293707_0 Alpha galactosidase A K07407 - 3.2.1.22 7.594e-200 629.0
LYD1_k127_293707_1 Domain of unknown function (DUF5009) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 292.0
LYD1_k127_293707_2 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001949 297.0
LYD1_k127_293707_3 negative regulation of superoxide anion generation K14379 GO:0000323,GO:0001101,GO:0001501,GO:0001503,GO:0001505,GO:0001817,GO:0001818,GO:0001894,GO:0002237,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0003993,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0007162,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009743,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0014070,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030155,GO:0030316,GO:0030334,GO:0030335,GO:0031224,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031348,GO:0031667,GO:0032101,GO:0032102,GO:0032496,GO:0032501,GO:0032502,GO:0032651,GO:0032652,GO:0032655,GO:0032680,GO:0032691,GO:0032692,GO:0032695,GO:0032720,GO:0032879,GO:0032928,GO:0032929,GO:0033273,GO:0033555,GO:0033591,GO:0033993,GO:0034097,GO:0034284,GO:0034641,GO:0036314,GO:0040012,GO:0040017,GO:0042221,GO:0042578,GO:0042592,GO:0042726,GO:0042742,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044281,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045019,GO:0045428,GO:0045453,GO:0046483,GO:0046849,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048705,GO:0048731,GO:0048771,GO:0048856,GO:0048869,GO:0048871,GO:0050727,GO:0050728,GO:0050789,GO:0050794,GO:0050830,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051270,GO:0051272,GO:0051704,GO:0051707,GO:0060249,GO:0060348,GO:0060349,GO:0065007,GO:0065008,GO:0070723,GO:0071704,GO:0080134,GO:0090322,GO:0097305,GO:0098542,GO:1901360,GO:1901564,GO:1901700,GO:1903426,GO:1903427,GO:1903555,GO:1903556,GO:1904406,GO:2000145,GO:2000147,GO:2000377,GO:2000378 3.1.3.2 0.0000000001999 73.0
LYD1_k127_293707_4 GlcNAc-PI de-N-acetylase K01463 - - 0.00004146 55.0
LYD1_k127_2939537_0 COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 6.267e-197 623.0
LYD1_k127_2939537_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 471.0
LYD1_k127_2939537_10 nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000004991 214.0
LYD1_k127_2939537_11 Cell division protein FtsQ K03589 - - 0.000000000000000000000000000000000000000004641 164.0
LYD1_k127_2939537_12 Efflux ABC transporter, permease protein K09808 - - 0.0000000000000000000000000000000000187 137.0
LYD1_k127_2939537_13 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000003887 100.0
LYD1_k127_2939537_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009775 466.0
LYD1_k127_2939537_3 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 462.0
LYD1_k127_2939537_4 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 439.0
LYD1_k127_2939537_5 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 450.0
LYD1_k127_2939537_6 permease K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 390.0
LYD1_k127_2939537_7 permease K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 383.0
LYD1_k127_2939537_8 Putative porin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003309 291.0
LYD1_k127_2939537_9 Bacterial periplasmic substrate-binding proteins K18691 - - 0.0000000000000000000000000000000000000000000000000000000000000000001969 238.0
LYD1_k127_3033620_0 ABC transporter, ATP-binding protein K06147 - - 2.411e-271 852.0
LYD1_k127_3033620_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.627e-257 802.0
LYD1_k127_3033620_10 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 317.0
LYD1_k127_3033620_11 TonB-dependent Receptor Plug K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 327.0
LYD1_k127_3033620_12 HlyD family secretion protein K02022 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 298.0
LYD1_k127_3033620_13 CHAT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007768 288.0
LYD1_k127_3033620_14 ABC transporter, ATP-binding protein K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001 287.0
LYD1_k127_3033620_15 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005313 253.0
LYD1_k127_3033620_16 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.000000000000000000000000000000000000000000000000000000000000005082 225.0
LYD1_k127_3033620_17 Pfam Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000006217 199.0
LYD1_k127_3033620_18 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000003163 192.0
LYD1_k127_3033620_19 transposase activity - - - 0.00000000000000000000000000000000000000000009494 166.0
LYD1_k127_3033620_2 Aconitase family (aconitate hydratase) K01703,K01705 - 4.2.1.33,4.2.1.35,4.2.1.36 5.405e-257 804.0
LYD1_k127_3033620_20 Protein of unknown function (DUF452) K09789 - 3.1.1.85 0.000000000000000000000000000000000003074 146.0
LYD1_k127_3033620_21 Sigma-70 region 2 - - - 0.00000000000000000000000000001981 124.0
LYD1_k127_3033620_22 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.0000000000006644 80.0
LYD1_k127_3033620_23 helix_turn _helix lactose operon repressor K02529 - - 0.00000000000133 79.0
LYD1_k127_3033620_3 Aconitase family (aconitate hydratase) K01703,K01704,K01705 - 4.2.1.33,4.2.1.35,4.2.1.36 1.881e-256 803.0
LYD1_k127_3033620_4 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 624.0
LYD1_k127_3033620_5 Domain of Unknown Function (DUF349) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 596.0
LYD1_k127_3033620_6 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 527.0
LYD1_k127_3033620_7 Domain of unknown function (DUF4369) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004216 401.0
LYD1_k127_3033620_8 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 368.0
LYD1_k127_3033620_9 UPF0761 membrane protein K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 368.0
LYD1_k127_3035359_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 5.693e-227 720.0
LYD1_k127_3035359_1 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 589.0
LYD1_k127_3035359_10 Alanine dehydrogenase/PNT, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 421.0
LYD1_k127_3035359_11 Cation transport protein K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 405.0
LYD1_k127_3035359_12 TIGRFAM capsular exopolysaccharide family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 413.0
LYD1_k127_3035359_13 CoA-binding domain K13012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 340.0
LYD1_k127_3035359_14 Belongs to the glycosyltransferase 26 family K05946 - 2.4.1.187 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 325.0
LYD1_k127_3035359_15 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 330.0
LYD1_k127_3035359_16 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007035 302.0
LYD1_k127_3035359_17 Telomere recombination - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007948 293.0
LYD1_k127_3035359_18 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003677 271.0
LYD1_k127_3035359_19 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001702 264.0
LYD1_k127_3035359_2 amp-binding K01897,K18660 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 558.0
LYD1_k127_3035359_20 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000008253 247.0
LYD1_k127_3035359_21 domain, Protein K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001651 267.0
LYD1_k127_3035359_22 FG-GAP repeat protein K01179,K01728,K03932 - 3.2.1.4,4.2.2.2 0.00000000000000000000000000000000000000000000000000000000000000000002438 249.0
LYD1_k127_3035359_23 Right handed beta helix region - - - 0.00000000000000000000000000000000000000000000000000000000000000000007133 263.0
LYD1_k127_3035359_24 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000003569 242.0
LYD1_k127_3035359_25 ComEC Rec2-like protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000001732 242.0
LYD1_k127_3035359_27 Type IX secretion system membrane protein PorP/SprF - - - 0.0000000000000000000000000000000000000000000000000000000003574 213.0
LYD1_k127_3035359_28 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000000000004034 204.0
LYD1_k127_3035359_29 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000221 223.0
LYD1_k127_3035359_3 COGs COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 535.0
LYD1_k127_3035359_30 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000005334 205.0
LYD1_k127_3035359_31 Lipopolysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000001047 192.0
LYD1_k127_3035359_32 - - - - 0.0000000000000000000000000000000000000000000000004522 179.0
LYD1_k127_3035359_33 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000008811 174.0
LYD1_k127_3035359_34 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000002419 180.0
LYD1_k127_3035359_35 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000002731 162.0
LYD1_k127_3035359_36 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000263 157.0
LYD1_k127_3035359_37 YoeB-like toxin of bacterial type II toxin-antitoxin system K19158 - - 0.00000000000000000000000000000000008283 134.0
LYD1_k127_3035359_38 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K17810 - 6.3.1.12 0.0000000000000000000000000000000003953 143.0
LYD1_k127_3035359_39 Polysaccharide biosynthesis/export protein K01991 - - 0.00000000000000000000000000000001924 136.0
LYD1_k127_3035359_4 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 513.0
LYD1_k127_3035359_40 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000002155 132.0
LYD1_k127_3035359_41 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000156 126.0
LYD1_k127_3035359_42 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000003097 116.0
LYD1_k127_3035359_43 Phosphopantetheine attachment site - - - 0.000000000000000000002991 95.0
LYD1_k127_3035359_44 Antitoxin component of a toxin-antitoxin (TA) module K19159 - - 0.000000000000000004824 86.0
LYD1_k127_3035359_45 C-terminal domain of CHU protein family - - - 0.000000000000003422 90.0
LYD1_k127_3035359_46 Protein of unknown function (DUF4199) - - - 0.00000000000002922 79.0
LYD1_k127_3035359_47 Chondroitinase B - - - 0.0000000000002345 85.0
LYD1_k127_3035359_48 - - - - 0.0000005263 59.0
LYD1_k127_3035359_5 Polysaccharide biosynthesis protein K17716 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 489.0
LYD1_k127_3035359_6 TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 466.0
LYD1_k127_3035359_7 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 435.0
LYD1_k127_3035359_8 Glycosyltransferase, group 1 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 430.0
LYD1_k127_3035359_9 NAD synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 426.0
LYD1_k127_3108068_0 DNA Topoisomerase IV K02621 - - 0.0 1185.0
LYD1_k127_3108068_1 DNA topoisomerase K02622 - - 1.64e-291 904.0
LYD1_k127_3108068_10 Protein of unknown function (DUF3109) - - - 0.0000000000000000000000000000000000000000000000000000000005919 207.0
LYD1_k127_3108068_11 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000006764 201.0
LYD1_k127_3108068_12 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000001747 185.0
LYD1_k127_3108068_13 Acid phosphatase homologues K19302 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009605,GO:0009607,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0042578,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0046467,GO:0046493,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0071704,GO:0075136,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.27 0.00000000000000000000000000000000000000000007222 166.0
LYD1_k127_3108068_14 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000000000000000000244 158.0
LYD1_k127_3108068_15 photosystem II stabilization - - - 0.000000000000000000009111 102.0
LYD1_k127_3108068_16 TonB-dependent Receptor Plug Domain - - - 0.000000000000000002481 93.0
LYD1_k127_3108068_17 - - - - 0.0000000001541 71.0
LYD1_k127_3108068_18 - Catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 0.0000006943 62.0
LYD1_k127_3108068_2 BPG-independent PGAM N-terminus (iPGM_N) K15633 - 5.4.2.12 4.154e-229 718.0
LYD1_k127_3108068_3 GTP1/OBG K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 516.0
LYD1_k127_3108068_4 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005894 534.0
LYD1_k127_3108068_5 WD40 repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005495 319.0
LYD1_k127_3108068_6 WD40 repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 308.0
LYD1_k127_3108068_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000001463 239.0
LYD1_k127_3108068_8 Bacterial lipoate protein ligase C-terminus K03800 - 6.3.1.20 0.000000000000000000000000000000000000000000000000000000000000000001502 239.0
LYD1_k127_3108068_9 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000009186 210.0
LYD1_k127_3109287_0 DNA polymerase alpha chain like domain K02337 - 2.7.7.7 0.0 1385.0
LYD1_k127_3109287_1 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.0 1137.0
LYD1_k127_3109287_10 Ribosomal protein L11 methyltransferase (PrmA) K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000001571 172.0
LYD1_k127_3109287_11 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000001542 163.0
LYD1_k127_3109287_12 transposase activity - - - 0.0000000000000000000000000000000000002409 151.0
LYD1_k127_3109287_13 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000000000002714 134.0
LYD1_k127_3109287_14 transposase activity - - - 0.00000000000000000000003767 101.0
LYD1_k127_3109287_15 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000004198 87.0
LYD1_k127_3109287_2 TonB dependent receptor - - - 4.153e-304 962.0
LYD1_k127_3109287_3 Aminotransferase class I and II K10206,K14261 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 582.0
LYD1_k127_3109287_4 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 375.0
LYD1_k127_3109287_5 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 345.0
LYD1_k127_3109287_6 Belongs to the SUA5 family K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000002228 225.0
LYD1_k127_3109287_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000111 224.0
LYD1_k127_3109287_8 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000004474 219.0
LYD1_k127_3109287_9 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000001572 200.0
LYD1_k127_3111925_0 TonB dependent receptor - - - 2.477e-306 970.0
LYD1_k127_3111925_1 SusD family K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 573.0
LYD1_k127_3111925_2 GIY-YIG catalytic domain K07461 - - 0.00000000000000000000000000007318 118.0
LYD1_k127_3151411_0 MacB-like periplasmic core domain K02004 - - 3.318e-297 931.0
LYD1_k127_3151411_1 NLP P60 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 473.0
LYD1_k127_3151411_2 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 399.0
LYD1_k127_3151411_3 Flavin-binding monooxygenase-like K07222 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 392.0
LYD1_k127_3255148_0 - - - - 1.529e-240 750.0
LYD1_k127_3255148_1 exo-alpha-(2->6)-sialidase activity K01186 GO:0001573,GO:0003674,GO:0003824,GO:0004308,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006687,GO:0006689,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0016020,GO:0016042,GO:0016052,GO:0016787,GO:0016798,GO:0016997,GO:0019377,GO:0030149,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046466,GO:0046479,GO:0046514,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.18 0.000000000000000000000000000000000000001737 168.0
LYD1_k127_3255148_2 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000000000000003391 128.0
LYD1_k127_32832_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 6.839e-269 844.0
LYD1_k127_32832_1 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 1.084e-201 640.0
LYD1_k127_32832_10 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001601 292.0
LYD1_k127_32832_11 diacylglycerol kinase, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000225 279.0
LYD1_k127_32832_12 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000001139 242.0
LYD1_k127_32832_13 GDSL-like Lipase/Acylhydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000004605 243.0
LYD1_k127_32832_14 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000005438 214.0
LYD1_k127_32832_15 D,D-heptose 1,7-bisphosphate phosphatase - - - 0.000000000000000000000000000000000000000000000000002041 185.0
LYD1_k127_32832_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000008798 184.0
LYD1_k127_32832_17 - - - - 0.000000000000000000000000000000000004976 145.0
LYD1_k127_32832_18 Ribosomal silencing factor during starvation K09710 - - 0.0000000000000000000000000000000007284 134.0
LYD1_k127_32832_19 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000001081 124.0
LYD1_k127_32832_2 50S ribosome-binding GTPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 563.0
LYD1_k127_32832_20 PFAM Biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.0000000000000000002035 90.0
LYD1_k127_32832_21 COG NOG17489 non supervised orthologous group - - - 0.00000000001811 66.0
LYD1_k127_32832_3 membrane protein involved in D-alanine export - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 544.0
LYD1_k127_32832_4 Transglycosylase SLT domain K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 499.0
LYD1_k127_32832_5 PFAM beta-lactamase domain protein K22405 - 1.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 489.0
LYD1_k127_32832_6 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 464.0
LYD1_k127_32832_7 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 385.0
LYD1_k127_32832_8 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007109 336.0
LYD1_k127_32832_9 Glutamine cyclotransferase K00683 - 2.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 303.0
LYD1_k127_3358767_0 Oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 593.0
LYD1_k127_3358767_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000004127 48.0
LYD1_k127_3392823_0 His Kinase A (phosphoacceptor) domain K02484,K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 497.0
LYD1_k127_3392823_1 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004232 252.0
LYD1_k127_341892_0 ASPIC and UnbV - - - 0.0 1318.0
LYD1_k127_341892_1 ASPIC and UnbV - - - 0.0 1293.0
LYD1_k127_341892_2 ASPIC and UnbV - - - 0.0 1029.0
LYD1_k127_341892_3 PFAM TonB-dependent Receptor Plug - - - 2.895e-289 918.0
LYD1_k127_341892_4 Tat pathway signal sequence domain protein - - - 7.365e-245 767.0
LYD1_k127_341892_5 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009127 471.0
LYD1_k127_341892_6 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 346.0
LYD1_k127_341892_7 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 336.0
LYD1_k127_341892_8 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 288.0
LYD1_k127_341892_9 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000002476 252.0
LYD1_k127_3422679_0 Domain of unknown function (DUF5103) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 318.0
LYD1_k127_3422679_1 MoeA C-terminal region (domain IV) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000002275 206.0
LYD1_k127_3422679_2 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000004914 189.0
LYD1_k127_3441972_0 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006281 599.0
LYD1_k127_3441972_1 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002989 260.0
LYD1_k127_344700_0 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 2.073e-234 731.0
LYD1_k127_344700_1 RNA polymerase, sigma-54 factor K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 608.0
LYD1_k127_344700_2 SPFH Band 7 PHB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 423.0
LYD1_k127_344700_3 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 309.0
LYD1_k127_344700_4 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005819 246.0
LYD1_k127_344700_5 Glycosyl transferase family 1 - - - 0.0000000000000000000000000000000000000000000000000000000001633 217.0
LYD1_k127_344700_6 helix_turn_helix gluconate operon transcriptional repressor - - - 0.000000000000000000000000000000000000000000000002737 175.0
LYD1_k127_344700_7 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000002045 166.0
LYD1_k127_344700_8 radical SAM domain protein - - - 0.0000000000000000000000000000000000009554 142.0
LYD1_k127_344700_9 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000005133 121.0
LYD1_k127_3470059_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000928 168.0
LYD1_k127_3470059_1 LysM domain protein - - - 0.000000000000000000000000000000000000006239 162.0
LYD1_k127_3490608_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 299.0
LYD1_k127_3490608_1 Domain of Unknown Function (DUF1259) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003423 280.0
LYD1_k127_3490608_2 Haem-binding domain - - - 0.0000000000000000000000000000000000000000000000009344 178.0
LYD1_k127_3490608_3 Protein of unknown function (DUF3347) - - - 0.00000000000000000000000000000000000000000000004928 176.0
LYD1_k127_3490608_4 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000002494 115.0
LYD1_k127_3490608_5 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000001901 106.0
LYD1_k127_3494757_0 Domain of unknown function (DUF4091) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 625.0
LYD1_k127_3494757_1 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000001545 252.0
LYD1_k127_3494757_2 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000003827 172.0
LYD1_k127_3494757_3 DNA polymerase alpha chain like domain - - - 0.00000000000000000000000001677 117.0
LYD1_k127_3496807_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1874.0
LYD1_k127_3496807_1 Phosphoesterase family - - - 0.0 1055.0
LYD1_k127_3496807_2 peptidase K01284,K01414 - 3.4.15.5,3.4.24.70 1.004e-249 787.0
LYD1_k127_3496807_3 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004548 531.0
LYD1_k127_3496807_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008676 477.0
LYD1_k127_3496807_5 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000004782 262.0
LYD1_k127_3496807_6 S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000921 237.0
LYD1_k127_3496807_7 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K03772,K03773 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000001165 208.0
LYD1_k127_3496807_8 Domain of unknown function (DUF3127) - - - 0.00000000000000000000000000001864 121.0
LYD1_k127_3502870_0 Domain of unknown function (DUF5107) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006036 303.0
LYD1_k127_3502870_1 Catalyzes the reversible epimerization of cellobiose to 4-O-beta-D-glucopyranosyl-D-mannose (Glc-Man) K16213 - 5.1.3.11 0.0000000000000000000000000000000000000000000000000000000003509 209.0
LYD1_k127_3504550_0 the aldose L-fucose into the corresponding ketose L-fuculose K01818 - 5.3.1.25,5.3.1.3 8.262e-285 886.0
LYD1_k127_3504550_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 3.597e-266 829.0
LYD1_k127_3504550_10 Carbohydrate kinase, FGGY family protein K00848,K00879 GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 2.7.1.5,2.7.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 502.0
LYD1_k127_3504550_11 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 477.0
LYD1_k127_3504550_12 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007698 471.0
LYD1_k127_3504550_13 Belongs to the SEDS family K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 439.0
LYD1_k127_3504550_14 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 379.0
LYD1_k127_3504550_15 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 378.0
LYD1_k127_3504550_16 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 355.0
LYD1_k127_3504550_17 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 345.0
LYD1_k127_3504550_18 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005411 292.0
LYD1_k127_3504550_19 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 287.0
LYD1_k127_3504550_2 ABC-2 type transporter - - - 4.405e-261 838.0
LYD1_k127_3504550_20 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009114 289.0
LYD1_k127_3504550_21 Psort location OuterMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002337 266.0
LYD1_k127_3504550_22 Amino-transferase class IV K00824,K00826 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21,2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000001179 246.0
LYD1_k127_3504550_23 shape-determining protein MreC K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000009742 230.0
LYD1_k127_3504550_24 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000002312 218.0
LYD1_k127_3504550_25 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000003746 201.0
LYD1_k127_3504550_26 phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000009355 181.0
LYD1_k127_3504550_27 abc-type fe3 -hydroxamate transport system, periplasmic component - - - 0.00000000000000000000000000000000000000000000001752 173.0
LYD1_k127_3504550_28 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000000000000000000000004137 170.0
LYD1_k127_3504550_29 rod shape-determining protein MreD - - - 0.0000000000000000000000000000000000000001365 155.0
LYD1_k127_3504550_3 cyclic 2,3-diphosphoglycerate synthetase activity - - - 7.482e-227 709.0
LYD1_k127_3504550_30 Belongs to the ompA family - - - 0.00000000000000000000000000003201 135.0
LYD1_k127_3504550_31 ABC-2 type transporter - - - 0.000000000000000008577 87.0
LYD1_k127_3504550_32 - - - - 0.000000000001948 76.0
LYD1_k127_3504550_33 Type IX secretion system membrane protein PorP/SprF - - - 0.000000008134 67.0
LYD1_k127_3504550_4 bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 6.086e-215 679.0
LYD1_k127_3504550_5 single-stranded-DNA-specific exonuclease RecJ K07462 - - 2.209e-213 676.0
LYD1_k127_3504550_6 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 1.694e-205 656.0
LYD1_k127_3504550_7 pfkB family carbohydrate kinase K00874 - 2.7.1.45 3.281e-198 621.0
LYD1_k127_3504550_8 Rod shape-determining protein MreB K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006819 561.0
LYD1_k127_3504550_9 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 527.0
LYD1_k127_3507208_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1364.0
LYD1_k127_3507208_1 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 4.557e-227 710.0
LYD1_k127_3507208_10 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000891 137.0
LYD1_k127_3507208_11 SmpB protein K03664 - - 0.0000000000000000000004833 97.0
LYD1_k127_3507208_12 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000003113 55.0
LYD1_k127_3507208_2 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 349.0
LYD1_k127_3507208_3 Murein transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 306.0
LYD1_k127_3507208_4 ABC transporter, ATP-binding protein K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008255 287.0
LYD1_k127_3507208_5 ABC 3 transport family protein K02075,K09816 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000024 287.0
LYD1_k127_3507208_6 Zinc-uptake complex component A periplasmic K09815,K11707 - - 0.000000000000000000000000000000000000000000000000000000000000000009293 234.0
LYD1_k127_3507208_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000003096 207.0
LYD1_k127_3507208_8 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000003626 214.0
LYD1_k127_3507208_9 Protein of unknown function (DUF559) - - - 0.0000000000000000000000000000005242 126.0
LYD1_k127_3512235_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1658.0
LYD1_k127_3512235_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1119.0
LYD1_k127_3512235_10 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 351.0
LYD1_k127_3512235_11 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 347.0
LYD1_k127_3512235_12 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009408 334.0
LYD1_k127_3512235_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000003985 241.0
LYD1_k127_3512235_14 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000003712 233.0
LYD1_k127_3512235_15 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000000000000000000001396 187.0
LYD1_k127_3512235_16 Inner membrane component domain - - - 0.000000000000000000000000000000000000000000000001164 176.0
LYD1_k127_3512235_2 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 1.572e-206 683.0
LYD1_k127_3512235_3 FabA-like domain K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 586.0
LYD1_k127_3512235_4 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 525.0
LYD1_k127_3512235_5 phosphohydrolase K06885 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 471.0
LYD1_k127_3512235_6 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 460.0
LYD1_k127_3512235_7 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 427.0
LYD1_k127_3512235_8 ABC-type multidrug transport system ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 392.0
LYD1_k127_3512235_9 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009 391.0
LYD1_k127_3517168_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 6.002e-304 942.0
LYD1_k127_3517168_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 347.0
LYD1_k127_3517168_2 family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 292.0
LYD1_k127_3517168_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 291.0
LYD1_k127_3517168_4 Signal transduction histidine kinase, LytS - - - 0.00000000000000000000000000000000000000000000000000000000002165 229.0
LYD1_k127_3517168_5 response regulator K02477 - - 0.0000000000000000000000001988 108.0
LYD1_k127_3539422_0 ABC transporter, ATP-binding protein K06158 - - 1.148e-234 743.0
LYD1_k127_3539422_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 598.0
LYD1_k127_3539422_10 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000002253 143.0
LYD1_k127_3539422_11 - - - - 0.00000000000000000000000000000000003573 150.0
LYD1_k127_3539422_12 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000002801 113.0
LYD1_k127_3539422_13 - - - - 0.000000000000000000006134 96.0
LYD1_k127_3539422_14 cytochrome c K00406 - - 0.000000003374 64.0
LYD1_k127_3539422_15 Cytochrome b(C-terminal)/b6/petD - - - 0.000000004682 61.0
LYD1_k127_3539422_2 IgA Peptidase M64 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 483.0
LYD1_k127_3539422_3 Transaldolase/Fructose-6-phosphate aldolase K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005453 459.0
LYD1_k127_3539422_4 Mechanosensitive ion channel K16053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009137 328.0
LYD1_k127_3539422_5 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218,K03437 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 285.0
LYD1_k127_3539422_6 Secretory lipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004723 281.0
LYD1_k127_3539422_7 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000001686 243.0
LYD1_k127_3539422_8 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000127 251.0
LYD1_k127_3539422_9 Acyl-ACP thioesterase K01071 - 3.1.2.21 0.0000000000000000000000000000000000001038 151.0
LYD1_k127_3554351_0 COG COG1073 Hydrolases of the alpha beta superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008713 595.0
LYD1_k127_3554351_1 Glycosyl hydrolase family 20, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 561.0
LYD1_k127_3554351_2 Enolase C-terminal domain-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008509 534.0
LYD1_k127_3564197_0 peptidyl-tyrosine sulfation - - - 1.387e-273 882.0
LYD1_k127_3564197_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 568.0
LYD1_k127_3564197_2 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 443.0
LYD1_k127_3564197_3 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 405.0
LYD1_k127_3564197_4 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 353.0
LYD1_k127_3564197_5 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 354.0
LYD1_k127_3564197_6 Elongator protein 3, MiaB family, Radical SAM K06936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 336.0
LYD1_k127_3564197_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 334.0
LYD1_k127_3564197_8 oxidation-reduction process K18239,K18240 GO:0003674,GO:0003824,GO:0016787,GO:0016801,GO:0016803 3.3.2.13,4.1.3.40,4.1.3.45 0.000000000000000000000000000000000000000000000000007435 186.0
LYD1_k127_3564197_9 Receptor family ligand binding region - - - 0.000000000000000000000000001428 126.0
LYD1_k127_3595758_0 COG1894 NADH ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335,K18331 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000001495 248.0
LYD1_k127_3595758_1 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000009356 197.0
LYD1_k127_3595758_2 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000001639 178.0
LYD1_k127_3615475_0 Belongs to the transketolase family K00615 - 2.2.1.1 7.735e-314 973.0
LYD1_k127_3615475_1 Glycosyl hydrolases family 35 K12308 - 3.2.1.23 2.367e-283 880.0
LYD1_k127_3615475_10 tagaturonate epimerase K21619 - 5.1.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 527.0
LYD1_k127_3615475_11 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 518.0
LYD1_k127_3615475_12 transmembrane transporter activity K08191 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009607 520.0
LYD1_k127_3615475_13 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 474.0
LYD1_k127_3615475_14 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 447.0
LYD1_k127_3615475_15 KR domain K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 431.0
LYD1_k127_3615475_16 Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate K01815 - 5.3.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 421.0
LYD1_k127_3615475_17 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 416.0
LYD1_k127_3615475_18 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 414.0
LYD1_k127_3615475_19 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 402.0
LYD1_k127_3615475_2 Iron hydrogenase small subunit K18332 - 1.12.1.3 1.173e-277 864.0
LYD1_k127_3615475_20 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 382.0
LYD1_k127_3615475_21 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006397 375.0
LYD1_k127_3615475_22 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 365.0
LYD1_k127_3615475_23 Xylose isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 356.0
LYD1_k127_3615475_24 AIR synthase related protein, C-terminal domain K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 344.0
LYD1_k127_3615475_25 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 342.0
LYD1_k127_3615475_26 2 iron, 2 sulfur cluster binding K00528,K02823,K16951 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 302.0
LYD1_k127_3615475_27 tRNA pseudouridine synthase activity K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 299.0
LYD1_k127_3615475_28 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001536 268.0
LYD1_k127_3615475_29 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000000000000008854 225.0
LYD1_k127_3615475_3 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 6.169e-259 803.0
LYD1_k127_3615475_30 - - - - 0.00000000000000000000000000000000000000000000000000000000000008809 226.0
LYD1_k127_3615475_31 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000168 212.0
LYD1_k127_3615475_32 Uncharacterized protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000000000000000000000000000000000007908 213.0
LYD1_k127_3615475_33 Belongs to the SOS response-associated peptidase family - - - 0.0000000000000000000000000000000000000000000000000000000008276 210.0
LYD1_k127_3615475_34 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000164 200.0
LYD1_k127_3615475_35 quinone binding K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000002501 190.0
LYD1_k127_3615475_36 4 iron, 4 sulfur cluster binding K00331,K14088,K14105 - 1.6.5.3 0.0000000000000000000000000000000000000000000000001937 180.0
LYD1_k127_3615475_37 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000000000000004979 177.0
LYD1_k127_3615475_38 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K12143 - - 0.000000000000000000000000000000000000000000002227 171.0
LYD1_k127_3615475_39 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family - - - 0.00000000000000000000000000000000000000008063 163.0
LYD1_k127_3615475_4 Acylphosphatase K04656 - - 5.359e-220 705.0
LYD1_k127_3615475_40 Na H ion antiporter subunit K05569 - - 0.000000000000000000000000000000000000001263 152.0
LYD1_k127_3615475_41 PFAM GCN5-related N-acetyltransferase K00619 - 2.3.1.1 0.000000000000000000000000000000000003255 142.0
LYD1_k127_3615475_42 spectrin binding K15502,K15503 - - 0.00000000000000000000000000000004942 141.0
LYD1_k127_3615475_43 COG NOG19094 non supervised orthologous group - - - 0.00000000000000000000000000003715 119.0
LYD1_k127_3615475_44 PFAM NADH-ubiquinone oxidoreductase chain 4L K05567 - - 0.00000000000000000000000007464 112.0
LYD1_k127_3615475_45 Multisubunit Na H antiporter K05566 - - 0.0000000000000000002804 93.0
LYD1_k127_3615475_46 hydrogenase maturation protease HycI K08315 - 3.4.23.51 0.0000000000000000004816 92.0
LYD1_k127_3615475_47 monovalent cation:proton antiporter activity K05571 - - 0.000000000000000008586 86.0
LYD1_k127_3615475_48 HupF/HypC family K04653 - - 0.0000000000000000371 83.0
LYD1_k127_3615475_49 4 iron, 4 sulfur cluster binding K00196,K05796,K12136,K15827 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044464,GO:0055114 - 0.0000000000000003374 85.0
LYD1_k127_3615475_5 Glucuronate isomerase K01812 - 5.3.1.12 2.678e-219 688.0
LYD1_k127_3615475_50 NADH ubiquinone oxidoreductase subunit 5 (Chain L) multisubunit Na H antiporter, MnhA subunit K00341,K05565 - 1.6.5.3 0.000000000000002934 82.0
LYD1_k127_3615475_51 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000001744 81.0
LYD1_k127_3615475_52 Multiple resistance and pH regulation protein F K05570 - - 0.00000000002358 67.0
LYD1_k127_3615475_54 - - - - 0.000000007065 63.0
LYD1_k127_3615475_55 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000382 58.0
LYD1_k127_3615475_56 long-chain fatty acid transport protein - - - 0.0000004506 60.0
LYD1_k127_3615475_57 Metal dependent phosphohydrolases with conserved 'HD' motif. K06950 - - 0.0009541 50.0
LYD1_k127_3615475_6 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 6.844e-204 642.0
LYD1_k127_3615475_7 Domain of unknown function (DUF2088) - - - 2.365e-200 631.0
LYD1_k127_3615475_8 ABC transporter, ATP-binding protein K06147,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 617.0
LYD1_k127_3615475_9 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004836 529.0
LYD1_k127_3620848_0 PFAM Y_Y_Y domain - - - 1.686e-206 687.0
LYD1_k127_3620848_1 Ndr family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 332.0
LYD1_k127_3620848_2 ABC-2 type transporter K21397 - - 0.00000000000000000000000000000000000000000000000000000000000009801 226.0
LYD1_k127_3620848_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000003555 216.0
LYD1_k127_3620848_4 sigma factor antagonist activity K04757 - 2.7.11.1 0.000000000000000000000000001961 116.0
LYD1_k127_3620848_5 transporter antisigma-factor antagonist STAS K04749,K06378 - - 0.0000000000000002508 82.0
LYD1_k127_3620848_6 Belongs to the MlaE permease family K02066 - - 0.000006976 50.0
LYD1_k127_3620848_7 PKD domain containing protein - - - 0.00004849 55.0
LYD1_k127_362524_0 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 456.0
LYD1_k127_362524_1 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 445.0
LYD1_k127_362524_2 PFAM NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000007585 226.0
LYD1_k127_362524_3 Trypsin-like serine protease K01312 - 3.4.21.4 0.000000000000000000000000000000000000000000003375 186.0
LYD1_k127_362524_4 D-aminopeptidase K16203 - - 0.0000000000000000000000000000000000002743 151.0
LYD1_k127_362524_5 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000009904 81.0
LYD1_k127_3633445_0 Oxidoreductase domain protein - - - 9.638e-271 836.0
LYD1_k127_3633445_1 PFAM Major Facilitator Superfamily K08191 - - 4.242e-250 775.0
LYD1_k127_3633445_10 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006037 275.0
LYD1_k127_3633445_11 Glycosyl Hydrolase Family 88 K18581 - 3.2.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000001264 246.0
LYD1_k127_3633445_12 DoxX K16937 - 1.8.5.2 0.0000000000000000000000000000000000000000000000004479 180.0
LYD1_k127_3633445_14 HemY domain protein K20276 - - 0.000000000000000000000000000000000000004733 163.0
LYD1_k127_3633445_15 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000002151 130.0
LYD1_k127_3633445_16 amidohydrolase K07045 - - 0.0000000000000000000000002383 117.0
LYD1_k127_3633445_17 Hep Hag repeat protein - - - 0.0007162 52.0
LYD1_k127_3633445_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 5.049e-226 711.0
LYD1_k127_3633445_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 9.908e-221 687.0
LYD1_k127_3633445_4 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 564.0
LYD1_k127_3633445_5 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 467.0
LYD1_k127_3633445_6 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 450.0
LYD1_k127_3633445_7 Dihydrodipicolinate synthetase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 453.0
LYD1_k127_3633445_8 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 417.0
LYD1_k127_3633445_9 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 315.0
LYD1_k127_3699178_0 TIGRFAM FeS assembly protein SufB K09014 - - 1.717e-262 813.0
LYD1_k127_3699178_1 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 529.0
LYD1_k127_3699178_2 arsenite transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 522.0
LYD1_k127_3699178_3 FeS assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 463.0
LYD1_k127_3699178_4 Part of SUF system involved in inserting iron-sulfur clusters into proteins K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 396.0
LYD1_k127_3699178_5 N-terminal domain of unknown function (DUF4140) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 353.0
LYD1_k127_3699178_6 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000386 289.0
LYD1_k127_3699178_7 Fe-S metabolism K02426 - - 0.000000000000000000000000000000000000000000000000000000003922 202.0
LYD1_k127_3699178_8 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000001052 202.0
LYD1_k127_3699178_9 FeS assembly SUF system protein - - - 0.00000000000000000000000000000000000006974 145.0
LYD1_k127_37745_0 RecG wedge domain K03655 - 3.6.4.12 6.664e-278 870.0
LYD1_k127_37745_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 8.082e-231 719.0
LYD1_k127_37745_10 OstA-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 424.0
LYD1_k127_37745_11 PFAM amino acid permease-associated region K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 413.0
LYD1_k127_37745_12 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 416.0
LYD1_k127_37745_13 Putative Fe-S cluster K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 361.0
LYD1_k127_37745_14 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 338.0
LYD1_k127_37745_15 peptidylprolyl isomerase K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 333.0
LYD1_k127_37745_16 Belongs to the serpin family K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009871 319.0
LYD1_k127_37745_17 MotA TolQ ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 288.0
LYD1_k127_37745_18 Part of a membrane complex involved in electron transport K03613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001535 264.0
LYD1_k127_37745_19 Part of a membrane complex involved in electron transport K03617 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003766 259.0
LYD1_k127_37745_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.652e-226 708.0
LYD1_k127_37745_20 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000009403 207.0
LYD1_k127_37745_21 COG NOG23400 non supervised orthologous group - - - 0.00000000000000000000000000000000000000000000000000000003342 206.0
LYD1_k127_37745_22 PFAM Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000002692 190.0
LYD1_k127_37745_23 Part of a membrane complex involved in electron transport K03612 - - 0.0000000000000000000000000000000000000000000000000002932 190.0
LYD1_k127_37745_24 TonB family domain protein - - - 0.00000000000000000000000000000000000000000000645 174.0
LYD1_k127_37745_25 Protein of unknown function (DUF2795) - - - 0.00000000000000000000000000000000000000005348 151.0
LYD1_k127_37745_26 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000000000007956 143.0
LYD1_k127_37745_27 Domain of unknown function (DUF1987) - - - 0.000000000000000000000000000008599 122.0
LYD1_k127_37745_28 Positive regulator of sigma(E), RseC MucC K03803 - - 0.0000000000000000000000271 105.0
LYD1_k127_37745_29 DnaJ molecular chaperone homology domain - - - 0.00000000000000001357 89.0
LYD1_k127_37745_3 Psort location OuterMembrane, score 9.49 - - - 1.977e-215 723.0
LYD1_k127_37745_30 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000002711 80.0
LYD1_k127_37745_31 Peptidase M16 inactive domain - - - 0.0000003634 59.0
LYD1_k127_37745_4 Voltage gated chloride channel K03281 - - 1.176e-207 661.0
LYD1_k127_37745_5 RnfC Barrel sandwich hybrid domain K03615 - - 2.686e-196 620.0
LYD1_k127_37745_6 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009263 490.0
LYD1_k127_37745_7 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 477.0
LYD1_k127_37745_8 NQR2, RnfD, RnfE family K03614 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009386 445.0
LYD1_k127_37745_9 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 441.0
LYD1_k127_3839171_0 Aminotransferase class I and II K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003597 606.0
LYD1_k127_3839171_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 487.0
LYD1_k127_3839171_2 Resolvase, N terminal domain - - - 0.000000000000000000000000000000000000000000000000000000002137 206.0
LYD1_k127_3839171_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000156 162.0
LYD1_k127_3839171_4 PFAM cytoplasmic chaperone TorD family protein - - - 0.00000000002473 72.0
LYD1_k127_3846454_0 AIR synthase related protein, N-terminal domain K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007293 402.0
LYD1_k127_3846454_1 Hydrolase of X-linked nucleoside diphosphate N terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002034 259.0
LYD1_k127_3846454_2 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000001482 257.0
LYD1_k127_3846454_3 phosphate-selective porin O and P - - - 0.00000000000000004548 84.0
LYD1_k127_392547_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003489 287.0
LYD1_k127_392547_1 AAA-like domain - - - 0.00000000003788 67.0
LYD1_k127_40690_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005546 522.0
LYD1_k127_40690_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 467.0
LYD1_k127_40690_10 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04757 - 2.7.11.1 0.0000000000000000000000000000005391 126.0
LYD1_k127_40690_11 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA - - - 0.000000000000000000000000001134 117.0
LYD1_k127_40690_12 Domain of unknown function (DUF4292) - - - 0.000034 54.0
LYD1_k127_40690_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 415.0
LYD1_k127_40690_3 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 396.0
LYD1_k127_40690_4 MORN repeat variant - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004122 380.0
LYD1_k127_40690_5 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005943 282.0
LYD1_k127_40690_6 Peptidase, M23 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002307 267.0
LYD1_k127_40690_7 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009111 273.0
LYD1_k127_40690_8 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000004729 226.0
LYD1_k127_40690_9 GidA associated domain 3 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000006936 199.0
LYD1_k127_410846_0 PAS domain K00575,K13924 - 2.1.1.80,3.1.1.61 0.0 1279.0
LYD1_k127_410846_1 Peptidase, M48 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008332 424.0
LYD1_k127_410846_2 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 320.0
LYD1_k127_410846_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003504 227.0
LYD1_k127_411275_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 8.634e-279 877.0
LYD1_k127_411275_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 471.0
LYD1_k127_411275_10 - - - - 0.00000000000000000000000001486 114.0
LYD1_k127_411275_11 DJ-1/PfpI family K03152 - 3.5.1.124 0.00000001604 63.0
LYD1_k127_411275_12 Beta-ketoacyl synthase K13613 - - 0.00000002978 64.0
LYD1_k127_411275_13 membrane - - - 0.0000005964 62.0
LYD1_k127_411275_14 Protein of unknown function (DUF1761) - - - 0.00001479 50.0
LYD1_k127_411275_15 D-mannonate dehydratase (UxuA) K01686 - 4.2.1.8 0.0000171 48.0
LYD1_k127_411275_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 445.0
LYD1_k127_411275_3 Tetratricopeptide repeats K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 348.0
LYD1_k127_411275_4 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 302.0
LYD1_k127_411275_5 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 287.0
LYD1_k127_411275_6 4Fe-4S binding domain K08358 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005304 282.0
LYD1_k127_411275_7 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000894 292.0
LYD1_k127_411275_9 Ferric reductase like transmembrane component - - - 0.000000000000000000000000000127 124.0
LYD1_k127_4158676_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009646 580.0
LYD1_k127_4158676_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 575.0
LYD1_k127_4158676_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 559.0
LYD1_k127_4158676_3 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 301.0
LYD1_k127_4158676_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000003358 117.0
LYD1_k127_4158676_5 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.000000000001965 68.0
LYD1_k127_4206730_0 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term K17108 - 3.2.1.45 0.0 1171.0
LYD1_k127_4206730_1 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.04e-322 1000.0
LYD1_k127_4206730_10 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000552 248.0
LYD1_k127_4206730_11 Vitamin B12 dependent methionine synthase, activation domain protein - - - 0.00000000000000000000000000000000000000004115 160.0
LYD1_k127_4206730_2 CarboxypepD_reg-like domain - - - 1.49e-262 833.0
LYD1_k127_4206730_3 WD40-like Beta Propeller Repeat - - - 5.935e-246 767.0
LYD1_k127_4206730_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 1.148e-202 639.0
LYD1_k127_4206730_5 Protein of unknown function (DUF2961) - - - 3.503e-199 627.0
LYD1_k127_4206730_6 Xylose isomerase-like TIM barrel K03079 - 5.1.3.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 308.0
LYD1_k127_4206730_7 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 299.0
LYD1_k127_4206730_8 CO dehydrogenase/acetyl-CoA synthase delta subunit K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000124 255.0
LYD1_k127_4206730_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000004259 231.0
LYD1_k127_4218166_0 PFAM Cation efflux - - - 0.00000000000000000000000000000122 121.0
LYD1_k127_4218166_1 Adenylate cyclase - - - 0.00000000000000000000000000001499 136.0
LYD1_k127_4218166_2 GIY-YIG catalytic domain K07461 - - 0.00000000000000003113 85.0
LYD1_k127_4218166_3 Tetratricopeptide repeat - - - 0.0000000000001798 84.0
LYD1_k127_4218166_4 Endonuclease containing a URI domain K07461 - - 0.000000000004183 69.0
LYD1_k127_4229770_0 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 4.372e-256 795.0
LYD1_k127_4229770_1 Melibiase K07407 - 3.2.1.22 8.89e-206 662.0
LYD1_k127_4229770_10 Sugar transport protein K05340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003552 421.0
LYD1_k127_4229770_11 Inosine-uridine preferring nucleoside hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 372.0
LYD1_k127_4229770_12 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 355.0
LYD1_k127_4229770_13 Fibronectin type III-like domain K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 312.0
LYD1_k127_4229770_14 DoxX K16937 - 1.8.5.2 0.0000000000000000000000000000000000118 154.0
LYD1_k127_4229770_15 Large extracellular alpha-helical protein - - - 0.0000000000000000000003419 102.0
LYD1_k127_4229770_16 Glycosyl hydrolase family 3 K05349 - 3.2.1.21 0.0000000000000001313 81.0
LYD1_k127_4229770_2 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 3.47e-201 635.0
LYD1_k127_4229770_3 ADP-ribosylglycohydrolase - - - 1.391e-196 627.0
LYD1_k127_4229770_4 Putative collagen-binding domain of a collagenase - - - 2.865e-196 621.0
LYD1_k127_4229770_5 Protein of unknown function (DUF4038) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 584.0
LYD1_k127_4229770_6 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 546.0
LYD1_k127_4229770_8 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 491.0
LYD1_k127_4229770_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 449.0
LYD1_k127_4244894_0 protein conserved in bacteria - - - 1.972e-207 653.0
LYD1_k127_4244894_1 Large extracellular alpha-helical protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002274 286.0
LYD1_k127_4244894_2 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000009402 145.0
LYD1_k127_4244894_3 - - - - 0.00004623 51.0
LYD1_k127_4244894_4 Domain of unknown function (DUF4249) - - - 0.0005231 44.0
LYD1_k127_436842_0 Dehydrogenase E1 component K00615 - 2.2.1.1 0.0 1030.0
LYD1_k127_436842_1 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 4.458e-279 868.0
LYD1_k127_436842_10 Belongs to the sulfur carrier protein TusA family - - - 0.00000000000000000000000000000000000001068 152.0
LYD1_k127_436842_11 type I restriction enzyme - - - 0.00000000000000000000000000000000000001271 149.0
LYD1_k127_436842_12 NUDIX domain K03574 - 3.6.1.55 0.0000000000000000000000000002256 126.0
LYD1_k127_436842_13 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000002566 59.0
LYD1_k127_436842_2 Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009335 497.0
LYD1_k127_436842_3 Hydrolases of the alpha beta superfamily K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 423.0
LYD1_k127_436842_4 Phosphorylase superfamily K01241 - 3.2.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 408.0
LYD1_k127_436842_5 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 361.0
LYD1_k127_436842_6 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 308.0
LYD1_k127_436842_7 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001795 225.0
LYD1_k127_436842_8 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000007371 221.0
LYD1_k127_436842_9 Domain of unknown function (DUF5103) - - - 0.0000000000000000000000000000000000000000000000000000008208 200.0
LYD1_k127_4369689_0 Beta galactosidase small chain K01190 - 3.2.1.23 0.0 1122.0
LYD1_k127_4369689_1 Belongs to the formate--tetrahydrofolate ligase family K01938 GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 8.656e-236 742.0
LYD1_k127_4369689_10 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000000000000000208 211.0
LYD1_k127_4369689_11 Domain of unknown function (DUF4294) - - - 0.000000000000000000000000000000000000001803 156.0
LYD1_k127_4369689_12 2'-5' RNA ligase superfamily K01975 - 3.1.4.58 0.0000000000000000000000000000000000000141 151.0
LYD1_k127_4369689_13 - - - - 0.00000000000000000000000000005318 133.0
LYD1_k127_4369689_14 Outer membrane protein beta-barrel domain - - - 0.0000000000000001257 88.0
LYD1_k127_4369689_15 Putative zincin peptidase - - - 0.0000000000000004667 86.0
LYD1_k127_4369689_16 TIR domain - - - 0.00002591 57.0
LYD1_k127_4369689_2 amino acid K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 563.0
LYD1_k127_4369689_3 Belongs to the GcvP family K00281,K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 527.0
LYD1_k127_4369689_4 radical SAM K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006293 473.0
LYD1_k127_4369689_5 NOL1 NOP2 sun family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006703 424.0
LYD1_k127_4369689_6 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 351.0
LYD1_k127_4369689_7 Domain of unknown function K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 299.0
LYD1_k127_4369689_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005217 269.0
LYD1_k127_4369689_9 COGs COG5616 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000008258 241.0
LYD1_k127_440389_0 PFAM TonB-dependent Receptor Plug - - - 4.966e-242 777.0
LYD1_k127_440389_1 Domain of unknown function (DUF4249) - - - 0.0000000000000000000000000000000000000001907 164.0
LYD1_k127_440389_2 - - - - 0.00000000000009678 80.0
LYD1_k127_4427348_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 396.0
LYD1_k127_4427348_1 COGs COG5616 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 402.0
LYD1_k127_4427348_10 Tetratricopeptide repeat - - - 0.00000000000000000003907 105.0
LYD1_k127_4427348_11 FAD dependent oxidoreductase - - - 0.0000003307 54.0
LYD1_k127_4427348_2 chaperone-mediated protein folding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 334.0
LYD1_k127_4427348_3 CotH kinase protein K06330 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 319.0
LYD1_k127_4427348_4 protein localization to T-tubule K10380,K15503,K21440 - - 0.000000000000000000000000000000000000000000000000000000000000000003332 243.0
LYD1_k127_4427348_5 PFAM Ankyrin repeat K06867 - - 0.000000000000000000000000000000000000000000000000000000002655 215.0
LYD1_k127_4427348_6 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000005461 194.0
LYD1_k127_4427348_7 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000105 153.0
LYD1_k127_4427348_8 Domain of unknown function (DUF4180) - - - 0.000000000000000000000000000000002686 134.0
LYD1_k127_4427348_9 Alternative locus ID - - - 0.0000000000000000000000000000002084 131.0
LYD1_k127_4436836_0 PFAM Bacterial alpha-L-rhamnosidase K05989 - 3.2.1.40 1.63e-283 885.0
LYD1_k127_4436836_1 RF-1 domain K15034 - - 0.000000000000000005302 87.0
LYD1_k127_4461797_0 Psort location CytoplasmicMembrane, score 10.00 - - - 1.302e-244 780.0
LYD1_k127_4461797_1 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005014 413.0
LYD1_k127_4461797_2 Methyltransferase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003408 291.0
LYD1_k127_4461797_3 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000001913 168.0
LYD1_k127_4461797_4 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000001161 128.0
LYD1_k127_4495270_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1245.0
LYD1_k127_4495270_1 Multidrug ABC transporter ATPase K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 609.0
LYD1_k127_4495270_10 Haem-binding domain - - - 0.0000002264 57.0
LYD1_k127_4495270_2 Sialate O-acetylesterase K05970 - 3.1.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 541.0
LYD1_k127_4495270_3 Phospholipase D. Active site motifs. K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007527 266.0
LYD1_k127_4495270_4 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000294 224.0
LYD1_k127_4495270_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000001197 228.0
LYD1_k127_4495270_6 Glutamyl-tRNA amidotransferase K09117 - - 0.00000000000000000000000000000000000000005547 155.0
LYD1_k127_4495270_7 PAS domain K00575,K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000001661 104.0
LYD1_k127_4495270_8 Membrane - - - 0.00000000000000000000005303 103.0
LYD1_k127_4495270_9 - - - - 0.00000000000001521 78.0
LYD1_k127_4498764_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 1.216e-309 955.0
LYD1_k127_4498764_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008997 456.0
LYD1_k127_4498764_10 amine dehydrogenase activity - - - 0.00000000000000000000004539 110.0
LYD1_k127_4498764_11 PQQ-like domain - - - 0.000000000001381 73.0
LYD1_k127_4498764_2 PQQ-like domain K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006156 427.0
LYD1_k127_4498764_3 LytTr DNA-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008808 394.0
LYD1_k127_4498764_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000729 391.0
LYD1_k127_4498764_5 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007085 343.0
LYD1_k127_4498764_6 FMN-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007916 284.0
LYD1_k127_4498764_7 - K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000006337 239.0
LYD1_k127_4498764_8 FMN-binding domain protein - - - 0.0000000000000000000000000000797 122.0
LYD1_k127_4498764_9 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000002298 120.0
LYD1_k127_4499219_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 453.0
LYD1_k127_4499219_1 Releases the N-terminal proline from various substrates K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 434.0
LYD1_k127_4499219_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003881 250.0
LYD1_k127_4499219_3 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000003309 173.0
LYD1_k127_4519799_0 Bacterial DNA topoisomeraes I ATP-binding domain K03168 - 5.99.1.2 8.13e-295 923.0
LYD1_k127_4519799_1 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 6.977e-265 840.0
LYD1_k127_4519799_10 TIGRFAM gliding motility-associated protein GldM - - - 0.0000000000000000000001197 102.0
LYD1_k127_4519799_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 601.0
LYD1_k127_4519799_3 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008339 555.0
LYD1_k127_4519799_4 Type IX secretion system membrane protein PorP/SprF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000139 282.0
LYD1_k127_4519799_5 Arginase family K01479 - 3.5.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000001265 273.0
LYD1_k127_4519799_6 PFAM Uncharacterised protein family (UPF0104) K07027 - - 0.000000000000000000000000000000000000000000000000000000000000163 224.0
LYD1_k127_4519799_7 Gliding motility protein GldL - - - 0.0000000000000000000000000000000000000000000000000000000009125 212.0
LYD1_k127_4519799_8 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000000000000007531 183.0
LYD1_k127_4519799_9 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.0000000000000000000000000000000000000002435 154.0
LYD1_k127_4522091_0 Cytochrome c552 K03385 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0016661,GO:0016662,GO:0019645,GO:0020037,GO:0022900,GO:0022904,GO:0030288,GO:0030313,GO:0031975,GO:0042279,GO:0042597,GO:0044237,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0097159,GO:0098809,GO:1901363 1.7.2.2 7.21e-261 810.0
LYD1_k127_4522091_1 Oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 384.0
LYD1_k127_4522091_2 HlyD membrane-fusion protein of T1SS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 316.0
LYD1_k127_4522091_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 317.0
LYD1_k127_4522091_4 PFAM NapC NirT cytochrome c family, N-terminal region K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001164 282.0
LYD1_k127_4522091_5 cation diffusion facilitator family transporter K14696 - - 0.0000000000000000000000000000000000000000000007517 175.0
LYD1_k127_45313_0 ABC-2 type transporter - - - 1.226e-225 732.0
LYD1_k127_45313_1 - - - - 0.000000000000000000000000000000000000000000002832 171.0
LYD1_k127_4534703_0 OmpA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008086 265.0
LYD1_k127_4534703_1 Acetyltransferase, gnat family K00657 - 2.3.1.57 0.000000000000000000000000000000000000000000000000000000001509 205.0
LYD1_k127_4534703_2 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000003489 195.0
LYD1_k127_4534703_3 Radical SAM superfamily K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000006258 87.0
LYD1_k127_4534717_0 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000006636 189.0
LYD1_k127_4534717_1 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.0001037 48.0
LYD1_k127_4594817_0 TIGRFAM FeS assembly protein SufB K09014 - - 1.86e-266 825.0
LYD1_k127_4594817_1 FeS assembly ATPase SufC K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 404.0
LYD1_k127_4594817_2 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 390.0
LYD1_k127_4594817_3 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000001778 91.0
LYD1_k127_4594817_4 Sodium proton antiporter, NhaD family - - - 0.0009967 46.0
LYD1_k127_4651096_0 S4 RNA-binding domain K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 497.0
LYD1_k127_4651096_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 448.0
LYD1_k127_4651096_10 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000002798 128.0
LYD1_k127_4651096_11 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000001641 79.0
LYD1_k127_4651096_2 rRNA small subunit methyltransferase G K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000006414 252.0
LYD1_k127_4651096_3 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002057 250.0
LYD1_k127_4651096_4 ECF sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001845 243.0
LYD1_k127_4651096_5 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000001524 241.0
LYD1_k127_4651096_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000005237 251.0
LYD1_k127_4651096_7 PASTA K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.00000000000000000000000000000000000000000000000000000000002093 218.0
LYD1_k127_4651096_8 Transposase K07491 - - 0.0000000000000000000000000000000000000000000000000006602 187.0
LYD1_k127_4651096_9 TPM domain - - - 0.00000000000000000000000000000000000000000000000007832 181.0
LYD1_k127_4740035_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 520.0
LYD1_k127_4740035_1 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000002198 198.0
LYD1_k127_4740035_2 beta-propeller repeat - - - 0.0000000000000000000000000001387 120.0
LYD1_k127_4745323_0 CoA binding domain K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 473.0
LYD1_k127_4745323_1 CAAX prenyl protease N-terminal, five membrane helices K03799,K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 458.0
LYD1_k127_4745323_2 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006071 371.0
LYD1_k127_4745323_3 transcriptional regulator (AraC family) - - - 0.000000000000000000000000000000000000000000000000000000000000004581 219.0
LYD1_k127_4745323_4 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000006833 192.0
LYD1_k127_4787975_0 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 511.0
LYD1_k127_4787975_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 413.0
LYD1_k127_4787975_2 transcriptional regulator K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 306.0
LYD1_k127_4787975_3 lyase activity - - - 0.000000000000000000000000000000000000000006595 171.0
LYD1_k127_4787975_4 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.00000000000000000000000000000000000000009472 167.0
LYD1_k127_4802599_0 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 586.0
LYD1_k127_4802599_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003322 399.0
LYD1_k127_4802599_2 - - - - 0.000001229 52.0
LYD1_k127_4805398_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 5.366e-218 685.0
LYD1_k127_4805398_1 Putative oxidoreductase C terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008211 571.0
LYD1_k127_4805398_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 337.0
LYD1_k127_4806063_0 lysine biosynthetic process via aminoadipic acid - - - 3.804e-296 932.0
LYD1_k127_4806063_1 Trehalose utilisation K09992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 364.0
LYD1_k127_4806063_2 YbaK proline--tRNA ligase associated domain protein K19055 - - 0.000000000000000000000000000000000000000000000000005612 183.0
LYD1_k127_4821501_0 FAD linked oxidase domain protein - - - 2.699e-236 745.0
LYD1_k127_4821501_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 476.0
LYD1_k127_4821501_10 - - - - 0.000000009225 57.0
LYD1_k127_4821501_11 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.000000717 61.0
LYD1_k127_4821501_12 Flavodoxin-like fold K00355 - 1.6.5.2 0.000005548 51.0
LYD1_k127_4821501_13 Psort location Cytoplasmic, score - - - 0.0008666 51.0
LYD1_k127_4821501_2 Carbohydrate family 9 binding domain-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 466.0
LYD1_k127_4821501_3 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009081 244.0
LYD1_k127_4821501_4 ribonuclease inhibitor activity - - - 0.0000000000000000000000000000000000000000000000000000000000000001382 231.0
LYD1_k127_4821501_5 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.0000000000000000000002871 105.0
LYD1_k127_4821501_6 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000004637 79.0
LYD1_k127_4821501_7 metal-dependent membrane protease K07052 - - 0.00000000000001229 83.0
LYD1_k127_4821501_8 PFAM blue (type 1) copper domain protein - - - 0.00000000000002208 81.0
LYD1_k127_4821501_9 Protein of unknown function (DUF1761) - - - 0.000000001918 64.0
LYD1_k127_4852761_0 PKD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 394.0
LYD1_k127_4852761_1 Dihydroorotate dehydrogenase K00226 - 1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 368.0
LYD1_k127_4852761_2 Glyoxalase-like domain K01759 - 4.4.1.5 0.000000000000000000000000000000000000005588 148.0
LYD1_k127_4852761_3 - - - - 0.000000006787 58.0
LYD1_k127_4855823_0 Carboxyl transferase domain - - - 2.306e-226 711.0
LYD1_k127_4855823_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000722 556.0
LYD1_k127_4855823_2 TIGRFAM glucose galactose transporter K02429 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 488.0
LYD1_k127_4855823_3 PFAM Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 358.0
LYD1_k127_4855823_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001324 278.0
LYD1_k127_4855823_5 Xaa-His dipeptidase K01270 - - 0.0000000000000000000000000000000000000000000000000000000000001352 216.0
LYD1_k127_4855823_6 - - - - 0.000000000000000000000000000000000000000000000000000001749 198.0
LYD1_k127_4855823_7 Biotin-requiring enzyme - - - 0.000000000000000000000000000000002514 135.0
LYD1_k127_4866262_0 Glycosyl hydrolases family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 505.0
LYD1_k127_4866262_1 Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 284.0
LYD1_k127_4869748_0 Valyl tRNA synthetase tRNA binding arm K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1252.0
LYD1_k127_4869748_1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 639.0
LYD1_k127_4869748_10 Psort location OuterMembrane, score - - - 0.000000000000000000000000000000000000000000000000000283 200.0
LYD1_k127_4869748_11 Predicted SPOUT methyltransferase K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000001967 175.0
LYD1_k127_4869748_12 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000001149 163.0
LYD1_k127_4869748_13 domain protein K13735,K19360 - - 0.000000000000000000000000000000000008095 157.0
LYD1_k127_4869748_14 COG NOG32209 non supervised orthologous group - - - 0.0000000000000000000002959 100.0
LYD1_k127_4869748_15 Domain of unknown function (DUF4907) - - - 0.000000000000002147 80.0
LYD1_k127_4869748_2 Aspartate aminotransferase K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 598.0
LYD1_k127_4869748_3 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 437.0
LYD1_k127_4869748_4 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 394.0
LYD1_k127_4869748_5 Kelch motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 361.0
LYD1_k127_4869748_6 ABC transporter permease K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008392 264.0
LYD1_k127_4869748_7 COGs COG3279 Response regulator of the LytR AlgR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001338 241.0
LYD1_k127_4869748_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000001826 234.0
LYD1_k127_4869748_9 Domain of unknown function (DUF4270) - - - 0.000000000000000000000000000000000000000000000000000001348 209.0
LYD1_k127_4873505_0 carboxylic acid catabolic process K01187 - 3.2.1.20 1.212e-231 734.0
LYD1_k127_4873505_1 ClpX C4-type zinc finger K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 6.102e-205 643.0
LYD1_k127_4873505_10 PFAM Phosphoribosyl transferase domain K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000001657 240.0
LYD1_k127_4873505_11 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.000000000000000000000000000000000000000000000000000000000000000009056 229.0
LYD1_k127_4873505_12 Transcription elongation factor, N-terminal K03624 - - 0.000000000000000000000000000000000000000000000000000000000008545 210.0
LYD1_k127_4873505_13 HIT family hydrolase K02503 - - 0.0000000000000000000000000000000000000000000000000000000007239 203.0
LYD1_k127_4873505_14 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000002078 164.0
LYD1_k127_4873505_15 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000002146 139.0
LYD1_k127_4873505_16 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000000002344 141.0
LYD1_k127_4873505_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000003707 113.0
LYD1_k127_4873505_18 nitrite reductase [NAD(P)H] activity - - - 0.0000000000001259 78.0
LYD1_k127_4873505_2 Seryl-tRNA synthetase N-terminal domain K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006448 595.0
LYD1_k127_4873505_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 451.0
LYD1_k127_4873505_4 Trigger factor K03545 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 406.0
LYD1_k127_4873505_5 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000375 377.0
LYD1_k127_4873505_6 Clp protease K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 350.0
LYD1_k127_4873505_7 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 292.0
LYD1_k127_4873505_8 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001061 258.0
LYD1_k127_4873505_9 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005405 262.0
LYD1_k127_4895143_0 Tex-like protein N-terminal domain K06959 - - 6.077e-305 949.0
LYD1_k127_4895143_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 6.339e-225 713.0
LYD1_k127_4895143_2 Domain of Unknown Function (DUF1080) - - - 2.003e-197 622.0
LYD1_k127_4895143_3 SAM-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 546.0
LYD1_k127_4895143_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 291.0
LYD1_k127_4895143_5 3'-5' exonuclease - - - 0.0000000000000000000000000000000000000000000000000000002828 199.0
LYD1_k127_4895143_6 Domain of unknown function (DUF5063) - - - 0.00000000000000000000000000000000000000000000001365 179.0
LYD1_k127_4900956_0 Peptidase M16 K07263 - - 6.236e-268 844.0
LYD1_k127_4900956_1 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 489.0
LYD1_k127_4900956_2 O-Methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000005437 231.0
LYD1_k127_4900956_3 GIY-YIG catalytic domain K07461 - - 0.00000000000000000000000001001 114.0
LYD1_k127_4900956_4 Phosphotransferase enzyme family K00899 - 2.7.1.100 0.000000004335 58.0
LYD1_k127_4900956_5 - - - - 0.0000005588 59.0
LYD1_k127_4900956_7 TIR domain - - - 0.0001576 49.0
LYD1_k127_496922_0 serine-type peptidase activity K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006077 492.0
LYD1_k127_496922_1 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 442.0
LYD1_k127_496922_2 His Kinase A (phosphoacceptor) domain K02484,K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008634 416.0
LYD1_k127_496922_3 His Kinase A (phosphoacceptor) domain K02484,K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 334.0
LYD1_k127_496922_4 Domain of unknown function (DUF5009) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 292.0
LYD1_k127_496922_5 Two component transcriptional regulator, winged helix family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000632 278.0
LYD1_k127_496922_6 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006242 246.0
LYD1_k127_496922_7 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000004189 187.0
LYD1_k127_496922_8 Transposase K07491 - - 0.000000000000000000000000000000000000000004344 159.0
LYD1_k127_4992891_0 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 - 6.1.1.18 4.264e-236 739.0
LYD1_k127_4992891_1 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 389.0
LYD1_k127_4992891_2 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000000000557 156.0
LYD1_k127_4996520_0 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 304.0
LYD1_k127_4996520_1 AAA domain, putative AbiEii toxin, Type IV TA system K02006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007507 277.0
LYD1_k127_4996520_2 cobalt ion transport K02007 GO:0000041,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0015675,GO:0016020,GO:0016021,GO:0030001,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000003465 235.0
LYD1_k127_4996520_3 transcriptional regulator K07722 - - 0.0000000000000000000000000000000000000000000000000004394 187.0
LYD1_k127_4996520_4 Beta-lactamase K21469 - 3.4.16.4 0.00000000000000000000000000000000001534 139.0
LYD1_k127_4996520_5 PFAM Cobalt transport protein K02008 - - 0.0000000000000000000000004602 116.0
LYD1_k127_4996520_6 cobalt ion transport K02009 - - 0.000000000000000337 83.0
LYD1_k127_4996520_7 Methyltransferase FkbM domain - - - 0.000000001403 64.0
LYD1_k127_5010852_0 DNA mismatch repair protein, C-terminal domain K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 584.0
LYD1_k127_5010852_1 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 387.0
LYD1_k127_5010852_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 379.0
LYD1_k127_5010852_3 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 351.0
LYD1_k127_5010852_4 abc transporter (atp-binding protein) K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 338.0
LYD1_k127_5010852_5 Putative neutral zinc metallopeptidase K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 328.0
LYD1_k127_5010852_6 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001172 278.0
LYD1_k127_5010852_7 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004461 276.0
LYD1_k127_5010852_8 Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000001609 233.0
LYD1_k127_5010852_9 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000001068 152.0
LYD1_k127_5016534_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000002022 211.0
LYD1_k127_5016534_1 His Kinase A (phosphoacceptor) domain K02484,K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000023 186.0
LYD1_k127_5025197_0 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000000000000000000000000004299 204.0
LYD1_k127_5025197_1 AAA-like domain - - - 0.0000000000000004611 91.0
LYD1_k127_5025197_2 COGs COG5616 integral membrane protein - - - 0.00000000000509 78.0
LYD1_k127_5036071_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 6.825e-200 636.0
LYD1_k127_5047929_0 COGs COG1914 Mn2 and Fe2 transporter of the NRAMP family - - - 3.253e-205 644.0
LYD1_k127_5047929_1 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 400.0
LYD1_k127_5047929_2 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 382.0
LYD1_k127_5047929_3 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 301.0
LYD1_k127_5047929_4 Domain of Unknown Function (DUF748) - - - 0.00000000000002123 87.0
LYD1_k127_5062077_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0 1108.0
LYD1_k127_5062077_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.0 1099.0
LYD1_k127_5062077_10 Membrane dipeptidase (Peptidase family M19) K01273,K01274 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 425.0
LYD1_k127_5062077_11 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009763 409.0
LYD1_k127_5062077_12 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 407.0
LYD1_k127_5062077_13 mannose-6-phosphate isomerase K01809 - 5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008585 391.0
LYD1_k127_5062077_14 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007762 346.0
LYD1_k127_5062077_15 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006524 344.0
LYD1_k127_5062077_16 Carbon-nitrogen hydrolase K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 327.0
LYD1_k127_5062077_17 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 312.0
LYD1_k127_5062077_18 Iron/manganese superoxide dismutases, alpha-hairpin domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 301.0
LYD1_k127_5062077_19 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 297.0
LYD1_k127_5062077_2 Pyruvate phosphate dikinase, PEP pyruvate binding domain - - - 1.748e-313 996.0
LYD1_k127_5062077_20 Phosphoribulokinase / Uridine kinase family K00876 - 2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008679 293.0
LYD1_k127_5062077_21 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 292.0
LYD1_k127_5062077_22 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007565 288.0
LYD1_k127_5062077_23 Pfam Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 295.0
LYD1_k127_5062077_24 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003872 263.0
LYD1_k127_5062077_25 TIGRFAM Bacteroidetes-specific - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006864 266.0
LYD1_k127_5062077_26 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000001644 255.0
LYD1_k127_5062077_27 ATP-NAD kinase K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000002791 244.0
LYD1_k127_5062077_28 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000000000000000000000008825 237.0
LYD1_k127_5062077_29 nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005553 233.0
LYD1_k127_5062077_3 Outer membrane protein assembly complex, YaeT protein K07277 - - 1.25e-265 842.0
LYD1_k127_5062077_30 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000787 233.0
LYD1_k127_5062077_31 Putative serine esterase (DUF676) - - - 0.000000000000000000000000000000000000000000000000000000000005675 217.0
LYD1_k127_5062077_32 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000003817 216.0
LYD1_k127_5062077_33 6-pyruvoyl tetrahydrobiopterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000008662 194.0
LYD1_k127_5062077_34 membrane K06142 - - 0.00000000000000000000000000000000000000000000000000001182 193.0
LYD1_k127_5062077_35 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000006691 192.0
LYD1_k127_5062077_36 PFAM UBA THIF-type NAD FAD binding protein K03148 - 2.7.7.73 0.000000000000000000000000000000000000000000000001506 181.0
LYD1_k127_5062077_37 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.00000000000000000000000000000000004781 143.0
LYD1_k127_5062077_38 S4 RNA-binding domain K04762 - - 0.00000000000000000000000000000000004817 138.0
LYD1_k127_5062077_39 Outer membrane protein (OmpH-like) K06142 - - 0.0000000000000000000000000000001697 131.0
LYD1_k127_5062077_4 2-oxoacid acceptor oxidoreductase, alpha subunit K00174 - 1.2.7.11,1.2.7.3 4.719e-265 829.0
LYD1_k127_5062077_40 Outer membrane protein (OmpH-like) K06142 - - 0.00000000000000000000000000009357 121.0
LYD1_k127_5062077_41 Pas domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000617 123.0
LYD1_k127_5062077_42 Inorganic polyphosphate kinase - - - 0.00000000000000000000000177 112.0
LYD1_k127_5062077_43 - - - - 0.00000000000000000001674 104.0
LYD1_k127_5062077_44 Septum formation initiator - - - 0.00000000000000000004086 93.0
LYD1_k127_5062077_45 ribonuclease G K08301 - - 0.00000000000002002 74.0
LYD1_k127_5062077_46 - - - - 0.00000000000003143 81.0
LYD1_k127_5062077_47 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000002312 73.0
LYD1_k127_5062077_48 MORN repeat variant - - - 0.000000004099 67.0
LYD1_k127_5062077_49 ThiS family K03149,K03154 - 2.8.1.10 0.00002283 49.0
LYD1_k127_5062077_5 Peptidase family M28 - - - 9.196e-222 698.0
LYD1_k127_5062077_6 cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 2.387e-207 664.0
LYD1_k127_5062077_7 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 492.0
LYD1_k127_5062077_8 Acyl transferase domain K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 439.0
LYD1_k127_5062077_9 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 423.0
LYD1_k127_5074553_0 AcrB/AcrD/AcrF family K07787 - - 0.0 2101.0
LYD1_k127_5074553_1 ABC transporter transmembrane region K06147 - - 6.016e-265 826.0
LYD1_k127_5074553_10 Heavy metal translocating P-type atpase - - - 0.00000000006714 64.0
LYD1_k127_5074553_11 pyrroloquinoline quinone binding - - - 0.0000000005268 72.0
LYD1_k127_5074553_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 540.0
LYD1_k127_5074553_3 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004515 503.0
LYD1_k127_5074553_4 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005311 313.0
LYD1_k127_5074553_5 ABC transporter, transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001634 263.0
LYD1_k127_5074553_6 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K13640 - - 0.00000000000000000000000000000000001168 140.0
LYD1_k127_5074553_7 CHAT domain - - - 0.000000000000000000000005495 114.0
LYD1_k127_5074553_9 DNA recombination K03631,K06921,K20345 - - 0.00000000000001747 74.0
LYD1_k127_5108098_0 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 559.0
LYD1_k127_5108098_1 deoxynucleoside kinase - - - 0.00000000001203 65.0
LYD1_k127_5114737_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0 1022.0
LYD1_k127_5114737_1 tRNA synthetases class II (A) K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.0 1022.0
LYD1_k127_5114737_10 C4-type zinc ribbon domain K07164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 311.0
LYD1_k127_5114737_11 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 283.0
LYD1_k127_5114737_12 Calcineurin-like phosphoesterase K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001665 260.0
LYD1_k127_5114737_13 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000006005 228.0
LYD1_k127_5114737_14 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000001635 140.0
LYD1_k127_5114737_15 Involved in the tonB-independent uptake of proteins - - - 0.0000000000004885 78.0
LYD1_k127_5114737_16 - - - - 0.0000000003177 70.0
LYD1_k127_5114737_17 TIGRFAM Bacteroidetes-specific - - - 0.00000001143 66.0
LYD1_k127_5114737_2 Peptidase family C25 - - - 1.567e-243 792.0
LYD1_k127_5114737_3 TIGRFAM gliding motility-associated lipoprotein GldJ - - - 1.887e-202 640.0
LYD1_k127_5114737_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 516.0
LYD1_k127_5114737_5 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 443.0
LYD1_k127_5114737_6 Psort location OuterMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 419.0
LYD1_k127_5114737_7 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003941 417.0
LYD1_k127_5114737_8 Peptidase, M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 391.0
LYD1_k127_5114737_9 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009074 393.0
LYD1_k127_5125555_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000497 320.0
LYD1_k127_5125555_1 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833,K03851,K12256,K15372 - 2.6.1.113,2.6.1.55,2.6.1.62,2.6.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000007558 273.0
LYD1_k127_5125555_2 Phage integrase SAM-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001051 232.0
LYD1_k127_5125555_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000196 229.0
LYD1_k127_5142511_0 ABC transporter K06147 - - 7.479e-250 783.0
LYD1_k127_5142511_1 Aldo/keto reductase family - - - 0.00000000001468 68.0
LYD1_k127_5142511_2 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0000007645 51.0
LYD1_k127_5148220_0 TonB-dependent receptor plug - - - 0.0 1132.0
LYD1_k127_5148220_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 9.029e-280 868.0
LYD1_k127_5148220_10 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 342.0
LYD1_k127_5148220_11 Lamin Tail Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007356 329.0
LYD1_k127_5148220_12 FmdE, Molybdenum formylmethanofuran dehydrogenase operon K01250 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006132 313.0
LYD1_k127_5148220_13 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 293.0
LYD1_k127_5148220_14 Phospholipase D. Active site motifs. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 297.0
LYD1_k127_5148220_15 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008879 287.0
LYD1_k127_5148220_16 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001321 276.0
LYD1_k127_5148220_17 abc-type fe3 -hydroxamate transport system, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000003004 189.0
LYD1_k127_5148220_18 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000000003956 155.0
LYD1_k127_5148220_19 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000004301 136.0
LYD1_k127_5148220_2 NapC/NirT cytochrome c family, N-terminal region - - - 3.567e-203 644.0
LYD1_k127_5148220_20 Protein of unknown function (DUF559) - - - 0.0000000000000000000000000000001662 128.0
LYD1_k127_5148220_21 Ribosomal protein S20 K02968 - - 0.000000000000000000000005104 103.0
LYD1_k127_5148220_22 PFAM RagB SusD K21572 - - 0.000000000009969 71.0
LYD1_k127_5148220_23 - - - - 0.0001207 47.0
LYD1_k127_5148220_25 - - - - 0.0007745 42.0
LYD1_k127_5148220_3 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 568.0
LYD1_k127_5148220_4 Peptidoglycan synthetase K01924,K02558 - 6.3.2.45,6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 528.0
LYD1_k127_5148220_5 signal peptide peptidase SppA, 67K type K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 512.0
LYD1_k127_5148220_6 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 450.0
LYD1_k127_5148220_7 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 451.0
LYD1_k127_5148220_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 387.0
LYD1_k127_5148220_9 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005365 371.0
LYD1_k127_5187876_0 Glucosamine-6-phosphate isomerase K02564 - 3.5.99.6 5e-323 1005.0
LYD1_k127_5187876_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 5.019e-243 759.0
LYD1_k127_5187876_2 PFAM Peptidase M16 inactive domain K07263 - - 7.041e-218 687.0
LYD1_k127_5187876_3 transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 482.0
LYD1_k127_5187876_4 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 505.0
LYD1_k127_5187876_5 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 315.0
LYD1_k127_5187876_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000005982 169.0
LYD1_k127_5187876_7 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000002653 130.0
LYD1_k127_5212939_0 TonB-linked outer membrane protein, SusC RagA family - - - 0.0 1417.0
LYD1_k127_5212939_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 7.812e-318 984.0
LYD1_k127_5212939_10 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 458.0
LYD1_k127_5212939_11 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005175 458.0
LYD1_k127_5212939_12 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 451.0
LYD1_k127_5212939_13 Cys/Met metabolism PLP-dependent enzyme K19715 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0016051,GO:0043170,GO:0044238,GO:0071704,GO:1901576 2.6.1.109 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006323 446.0
LYD1_k127_5212939_14 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 455.0
LYD1_k127_5212939_15 acetolactate synthase K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 437.0
LYD1_k127_5212939_16 Trypsin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 421.0
LYD1_k127_5212939_17 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 365.0
LYD1_k127_5212939_18 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000348 347.0
LYD1_k127_5212939_19 COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 332.0
LYD1_k127_5212939_2 PFAM RagB SusD K21572 - - 1.776e-298 924.0
LYD1_k127_5212939_20 Fibronectin type 3 domain K21571 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 315.0
LYD1_k127_5212939_21 PFAM Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007282 328.0
LYD1_k127_5212939_22 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 304.0
LYD1_k127_5212939_23 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 299.0
LYD1_k127_5212939_24 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 287.0
LYD1_k127_5212939_25 ABC transporter, ATP-binding protein K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 287.0
LYD1_k127_5212939_26 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006245 285.0
LYD1_k127_5212939_27 mandelate racemase muconate lactonizing K18334 - 4.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005436 286.0
LYD1_k127_5212939_28 UTRA domain K03710,K10711 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000516 267.0
LYD1_k127_5212939_29 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000001817 149.0
LYD1_k127_5212939_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 1.825e-230 719.0
LYD1_k127_5212939_30 RNA recognition motif - - - 0.00000000000000000000000000000003075 128.0
LYD1_k127_5212939_31 Receptor - - - 0.0000000000000000008316 101.0
LYD1_k127_5212939_32 - - - - 0.000000000000001359 78.0
LYD1_k127_5212939_33 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.000000000000002921 81.0
LYD1_k127_5212939_34 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000007462 70.0
LYD1_k127_5212939_35 Belongs to the 'phage' integrase family - - - 0.0000000001528 64.0
LYD1_k127_5212939_36 Belongs to the DegT DnrJ EryC1 family - - - 0.00000001873 58.0
LYD1_k127_5212939_37 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.00002281 51.0
LYD1_k127_5212939_38 - K19033 - - 0.0005841 49.0
LYD1_k127_5212939_4 Tetratricopeptide repeat protein - - - 1.107e-220 719.0
LYD1_k127_5212939_5 Belongs to the glycosyl hydrolase 3 family K05349,K17641 - 3.2.1.21 7.815e-207 679.0
LYD1_k127_5212939_6 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 3.53e-206 658.0
LYD1_k127_5212939_7 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009251 548.0
LYD1_k127_5212939_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 499.0
LYD1_k127_5212939_9 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 467.0
LYD1_k127_5233638_0 TonB-linked outer membrane protein, SusC RagA family - - - 0.0 1419.0
LYD1_k127_5233638_1 PFAM RagB SusD K21572 - - 5.516e-299 926.0
LYD1_k127_5233638_10 cellulase activity K01406,K07451,K08651,K11904 - 3.4.21.66,3.4.24.40 0.000000000448 71.0
LYD1_k127_5233638_2 PFAM glycoside hydrolase, family 3 domain protein K05349 - 3.2.1.21 2.339e-213 687.0
LYD1_k127_5233638_3 Cys/Met metabolism PLP-dependent enzyme K19715 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0016051,GO:0043170,GO:0044238,GO:0071704,GO:1901576 2.6.1.109 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 433.0
LYD1_k127_5233638_4 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008177 381.0
LYD1_k127_5233638_5 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 352.0
LYD1_k127_5233638_6 Transcriptional regulator, AraC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002298 257.0
LYD1_k127_5233638_7 Protein of unknown function (DUF1573) - - - 0.0000000000000000724 85.0
LYD1_k127_5233638_8 spectrin binding K15502,K19947 - 1.14.13.225 0.00000000000002773 86.0
LYD1_k127_5233638_9 PFAM glycoside hydrolase, family 3 domain protein K05349 - 3.2.1.21 0.0000000000001643 76.0
LYD1_k127_5284936_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.234e-223 715.0
LYD1_k127_5284936_1 protein histidine kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006162 287.0
LYD1_k127_5284936_2 Divergent 4Fe-4S mono-cluster - - - 0.00000000000000000000000000000007019 131.0
LYD1_k127_5284936_3 Iron-binding zinc finger CDGSH type - - - 0.000002141 53.0
LYD1_k127_5311288_0 SusD family K21572 - - 4.691e-241 758.0
LYD1_k127_5311288_1 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - 1.556e-225 707.0
LYD1_k127_5311288_2 TIGRFAM TonB-dependent outer membrane receptor, SusC RagA subfamily, signature region - - - 1.738e-208 659.0
LYD1_k127_5323084_0 COGs COG5616 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005169 297.0
LYD1_k127_5343126_0 Psort location OuterMembrane, score 9.52 K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 309.0
LYD1_k127_5343126_1 PFAM Archaeal ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000003959 240.0
LYD1_k127_5343126_2 PFAM WD domain, G-beta repeat - - - 0.0000000001469 75.0
LYD1_k127_540946_0 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 297.0
LYD1_k127_540946_1 Penicillinase repressor - - - 0.00000000000000000000000000000000000000000000000001033 183.0
LYD1_k127_540946_2 - - - - 0.0000003718 58.0
LYD1_k127_5451216_0 TonB dependent receptor - - - 4.003e-262 838.0
LYD1_k127_5451216_1 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 518.0
LYD1_k127_5451216_2 Thiamin pyrophosphokinase, catalytic domain K00949 - 2.7.6.2 0.000000000000000000000000000000000000000000000000000008174 194.0
LYD1_k127_5489304_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 514.0
LYD1_k127_5489304_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001098 230.0
LYD1_k127_5489304_2 SPTR Cupin 2 conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000001975 202.0
LYD1_k127_5489304_3 - - - - 0.0000000000000000000000000000000000000000000000000004335 193.0
LYD1_k127_5489304_4 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000003587 172.0
LYD1_k127_5489304_5 - - - - 0.000000000000000002529 88.0
LYD1_k127_5489304_6 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00362,K02587,K13819 - 1.7.1.15 0.00000000000002253 74.0
LYD1_k127_5489304_7 Domain of unknown function (DUF4091) - - - 0.000007525 49.0
LYD1_k127_5505691_0 FtsX-like permease family K02004 - - 3.238e-227 728.0
LYD1_k127_5505691_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 1.041e-219 685.0
LYD1_k127_5505691_10 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000002802 214.0
LYD1_k127_5505691_11 - - - - 0.00000000000000000000000000000000000000000000000000000000538 212.0
LYD1_k127_5505691_12 permease K02004 - - 0.000000000000000000000000000000000000001073 170.0
LYD1_k127_5505691_13 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000004425 147.0
LYD1_k127_5505691_14 - - - - 0.00000000000000000003521 99.0
LYD1_k127_5505691_2 permease K02004 - - 4.265e-213 687.0
LYD1_k127_5505691_3 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 4.106e-196 627.0
LYD1_k127_5505691_4 Psort location Extracellular, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 533.0
LYD1_k127_5505691_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 375.0
LYD1_k127_5505691_6 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 375.0
LYD1_k127_5505691_7 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003794 345.0
LYD1_k127_5505691_8 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 323.0
LYD1_k127_5505691_9 transposase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 328.0
LYD1_k127_5511249_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004224 377.0
LYD1_k127_5511249_1 - - - - 0.00003617 53.0
LYD1_k127_5511249_2 Helix-turn-helix domain - - - 0.0001474 50.0
LYD1_k127_5519399_0 glycosyl hydrolase, family 3 K05349 - 3.2.1.21 0.0 1035.0
LYD1_k127_5519399_1 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 3.515e-249 794.0
LYD1_k127_5519399_10 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000031 188.0
LYD1_k127_5519399_11 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000001109 140.0
LYD1_k127_5519399_12 amine dehydrogenase activity K21449 - - 0.00000000000000000000006984 106.0
LYD1_k127_5519399_14 AraC family transcriptional regulator - - - 0.00000001634 57.0
LYD1_k127_5519399_15 Putative prokaryotic signal transducing protein - - - 0.00000005072 57.0
LYD1_k127_5519399_16 - - - - 0.0000001056 63.0
LYD1_k127_5519399_2 Peptidase M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003624 529.0
LYD1_k127_5519399_3 beta-1,4-mannooligosaccharide phosphorylase K21065 - 3.2.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007067 516.0
LYD1_k127_5519399_4 Aspartate-ammonia ligase K01914 - 6.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 456.0
LYD1_k127_5519399_5 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 376.0
LYD1_k127_5519399_6 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003028 352.0
LYD1_k127_5519399_7 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 357.0
LYD1_k127_5519399_8 NmrA-like family K07118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 303.0
LYD1_k127_5519399_9 Transcription elongation factor, GreA/GreB, C-term K04760 - - 0.0000000000000000000000000000000000000000000000000000000000004564 214.0
LYD1_k127_5526740_0 indolepyruvate ferredoxin oxidoreductase activity K00179,K08941 - 1.2.7.8 2.558e-222 700.0
LYD1_k127_5526740_1 Oxidoreductase, NAD-binding domain protein - - - 1.274e-204 647.0
LYD1_k127_5526740_10 Redoxin family - - - 0.0000000000000000000000000000000000000000000000000000001597 199.0
LYD1_k127_5526740_11 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000000000000000000000000000000000000000000002131 189.0
LYD1_k127_5526740_12 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000006687 145.0
LYD1_k127_5526740_13 Single-strand binding protein family K03111 - - 0.000000000000000000000000000000000001231 143.0
LYD1_k127_5526740_14 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000003545 128.0
LYD1_k127_5526740_15 - - - - 0.00000000000000000000000000002343 121.0
LYD1_k127_5526740_16 CarboxypepD_reg-like domain - - - 0.000000000000000000000000003711 119.0
LYD1_k127_5526740_2 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 359.0
LYD1_k127_5526740_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 338.0
LYD1_k127_5526740_4 N-acetylglucosaminylinositol deacetylase activity K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 314.0
LYD1_k127_5526740_5 Peptidase, M28 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001251 292.0
LYD1_k127_5526740_6 PFAM ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002049 281.0
LYD1_k127_5526740_7 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002332 268.0
LYD1_k127_5526740_8 Peptidase, M28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001079 277.0
LYD1_k127_5526740_9 ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002779 252.0
LYD1_k127_5549164_0 Heat shock 70 kDa protein K04043 - - 0.0 1024.0
LYD1_k127_5549164_1 SprB repeat - - - 1.412e-234 790.0
LYD1_k127_5549164_10 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 306.0
LYD1_k127_5549164_11 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 300.0
LYD1_k127_5549164_12 Endonuclease Exonuclease phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006281 272.0
LYD1_k127_5549164_13 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001256 272.0
LYD1_k127_5549164_14 Domain of unknown function (DUF4268) - - - 0.00000000000000000000000000000000000000000000000000000000000000000009931 242.0
LYD1_k127_5549164_15 Fibronectin type 3 domain K21571 - - 0.000000000000000000000000000000000000000000000000000000000000000003592 236.0
LYD1_k127_5549164_16 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000002789 196.0
LYD1_k127_5549164_17 MORN repeat variant - - - 0.000000000000000000000000000000000000000000004992 173.0
LYD1_k127_5549164_18 IMG reference gene - - - 0.00000000000000000000000000000000000000003128 178.0
LYD1_k127_5549164_19 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000001152 160.0
LYD1_k127_5549164_2 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 3.294e-201 636.0
LYD1_k127_5549164_20 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000000000003374 146.0
LYD1_k127_5549164_21 Domain of unknown function (DUF4249) - - - 0.00000000000000000000000000000000001739 151.0
LYD1_k127_5549164_22 Transglycosylase associated protein - - - 0.0000000000000000000000000000000004134 132.0
LYD1_k127_5549164_23 domain, Protein - - - 0.0000000000000000003773 105.0
LYD1_k127_5549164_24 Exonuclease VII small subunit K03602 - 3.1.11.6 0.000000000000543 70.0
LYD1_k127_5549164_3 GTP cyclohydrolase II K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 608.0
LYD1_k127_5549164_4 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003757 431.0
LYD1_k127_5549164_5 Predicted permease YjgP/YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006336 388.0
LYD1_k127_5549164_6 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 382.0
LYD1_k127_5549164_7 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 379.0
LYD1_k127_5549164_8 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009825 337.0
LYD1_k127_5549164_9 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 344.0
LYD1_k127_5551968_0 Protein of unknown function (DUF2723) - - - 0.0 1023.0
LYD1_k127_5551968_1 Tellurite resistance protein TerB K21397 - - 4.559e-301 953.0
LYD1_k127_5551968_10 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 318.0
LYD1_k127_5551968_11 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009513 319.0
LYD1_k127_5551968_12 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 295.0
LYD1_k127_5551968_13 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001468 287.0
LYD1_k127_5551968_14 COG3279 Response regulator of the LytR AlgR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000835 273.0
LYD1_k127_5551968_15 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001313 274.0
LYD1_k127_5551968_16 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000374 269.0
LYD1_k127_5551968_17 Ribosome recycling factor K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000002335 245.0
LYD1_k127_5551968_18 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000000000000000000000007576 235.0
LYD1_k127_5551968_19 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000002587 231.0
LYD1_k127_5551968_2 Belongs to the glycosyl hydrolase 2 family - - - 7.454e-297 932.0
LYD1_k127_5551968_20 Cell envelope biogenesis protein OmpA K02557 - - 0.00000000000000000000000000000000000000000000000000000000000002998 226.0
LYD1_k127_5551968_21 - - - - 0.0000000000000000000000000000000000000000000000000000001086 205.0
LYD1_k127_5551968_22 - - - - 0.000000000000000000000000000000000000000000000000000002155 205.0
LYD1_k127_5551968_23 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000001405 190.0
LYD1_k127_5551968_24 Cytidine and deoxycytidylate deaminase zinc-binding region K01487 - 3.5.4.3 0.00000000000000000000000000000000000000000000000006524 182.0
LYD1_k127_5551968_25 - - - - 0.00000000000000000000000000000000000000000003657 171.0
LYD1_k127_5551968_26 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000003717 166.0
LYD1_k127_5551968_27 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000003394 165.0
LYD1_k127_5551968_28 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000001603 141.0
LYD1_k127_5551968_29 Sigma factor regulatory protein, FecR PupR family - - - 0.0000000000000000000000000000001208 137.0
LYD1_k127_5551968_3 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 9.945e-275 861.0
LYD1_k127_5551968_30 Domain of unknown function (DU1801) - - - 0.00000000000728 66.0
LYD1_k127_5551968_31 inositol monophosphate 1-phosphatase activity K01092 - 3.1.3.25 0.000000237 53.0
LYD1_k127_5551968_32 - - - - 0.000001223 60.0
LYD1_k127_5551968_33 Site-specific recombinase, DNA invertase Pin - - - 0.00003745 46.0
LYD1_k127_5551968_34 PFAM Amidohydrolase 2 - - - 0.0001944 45.0
LYD1_k127_5551968_35 - - - - 0.0003162 49.0
LYD1_k127_5551968_4 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 565.0
LYD1_k127_5551968_5 Uroporphyrinogen decarboxylase (URO-D) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 529.0
LYD1_k127_5551968_6 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 387.0
LYD1_k127_5551968_7 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524 381.0
LYD1_k127_5551968_8 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 374.0
LYD1_k127_5551968_9 Elongation factor TS K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 355.0
LYD1_k127_5565666_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007381 601.0
LYD1_k127_5565666_1 Von Willebrand factor A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 407.0
LYD1_k127_5565666_10 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000000006583 166.0
LYD1_k127_5565666_11 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000001146 118.0
LYD1_k127_5565666_12 Protein conserved in bacteria - - - 0.00000000000000000002456 95.0
LYD1_k127_5565666_13 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000000000007637 82.0
LYD1_k127_5565666_15 Putative binding domain, N-terminal - - - 0.00000002063 67.0
LYD1_k127_5565666_2 Glucokinase K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008977 389.0
LYD1_k127_5565666_3 Glucokinase K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 353.0
LYD1_k127_5565666_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 319.0
LYD1_k127_5565666_5 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 316.0
LYD1_k127_5565666_6 Protein of unknown function (DUF4197) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004282 282.0
LYD1_k127_5565666_7 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.0000000000000000000000000000000000000000000000000000000000000000000002431 244.0
LYD1_k127_5565666_8 Carbohydrate-binding family 9 - - - 0.00000000000000000000000000000000000000000000000000000000000004732 220.0
LYD1_k127_5565666_9 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000008253 172.0
LYD1_k127_5625253_0 COGs COG5616 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 399.0
LYD1_k127_5625253_1 COGs COG5616 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001988 280.0
LYD1_k127_5630763_0 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 9.486e-267 829.0
LYD1_k127_5630763_1 magnesium chelatase K07391 - - 1.357e-234 734.0
LYD1_k127_5630763_2 Ammonium Transporter K03320 - - 3.843e-209 657.0
LYD1_k127_5630763_3 TrkA-C domain K11105 - - 1.689e-204 646.0
LYD1_k127_5630763_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 551.0
LYD1_k127_5630763_5 ROK family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005578 326.0
LYD1_k127_5630763_6 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000000000001213 170.0
LYD1_k127_5630763_7 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.000000000000001889 87.0
LYD1_k127_5632936_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1737.0
LYD1_k127_5632936_1 Hypothetical glycosyl hydrolase 6 - - - 0.0 1085.0
LYD1_k127_5632936_10 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 399.0
LYD1_k127_5632936_11 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 398.0
LYD1_k127_5632936_12 endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 338.0
LYD1_k127_5632936_13 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293 330.0
LYD1_k127_5632936_14 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 314.0
LYD1_k127_5632936_15 COGs COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1 K22132 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006102 290.0
LYD1_k127_5632936_16 O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001269 278.0
LYD1_k127_5632936_17 SdiA-regulated - - - 0.0000000000000000000000000000000000000000000000000000000000000006843 231.0
LYD1_k127_5632936_18 hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000007254 153.0
LYD1_k127_5632936_19 Domain of unknown function (DUF4956) - - - 0.000000000000000000000000000000000004904 145.0
LYD1_k127_5632936_2 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 1.865e-287 901.0
LYD1_k127_5632936_20 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.0000000000000000000000000008756 113.0
LYD1_k127_5632936_21 Hydrolase, alpha beta domain protein K06889 - - 0.000000000000000004745 89.0
LYD1_k127_5632936_22 Tellurite resistance protein TerB - - - 0.000000000000004571 80.0
LYD1_k127_5632936_23 Belongs to the ompA family - - - 0.00000000000006543 78.0
LYD1_k127_5632936_24 FMN_bind - - - 0.0000001733 59.0
LYD1_k127_5632936_25 lytic transglycosylase activity K08307 - - 0.000001305 57.0
LYD1_k127_5632936_3 Domain of unknown function (DUF4091) - - - 2.954e-235 741.0
LYD1_k127_5632936_4 CotH kinase protein - - - 1.564e-219 700.0
LYD1_k127_5632936_5 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 9.133e-207 655.0
LYD1_k127_5632936_6 PFAM Oxidoreductase family, NAD-binding Rossmann fold - - - 2.36e-204 647.0
LYD1_k127_5632936_7 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 565.0
LYD1_k127_5632936_8 Belongs to the glycosyl hydrolase 18 family K01183 - 3.2.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 507.0
LYD1_k127_5632936_9 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 463.0
LYD1_k127_5669580_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 3.439e-276 859.0
LYD1_k127_5669580_1 Class II glutamine amidotransferase K00764 - 2.4.2.14 1.397e-260 818.0
LYD1_k127_5669580_10 - - - - 0.00000000000000000006103 93.0
LYD1_k127_5669580_11 - - - - 0.0000000000000002569 85.0
LYD1_k127_5669580_12 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000213 53.0
LYD1_k127_5669580_2 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 5.613e-197 635.0
LYD1_k127_5669580_3 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 598.0
LYD1_k127_5669580_4 Hemolysin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 364.0
LYD1_k127_5669580_5 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 352.0
LYD1_k127_5669580_6 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 334.0
LYD1_k127_5669580_7 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 334.0
LYD1_k127_5669580_8 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000000000000000000000000000000000007533 184.0
LYD1_k127_5669580_9 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000002924 184.0
LYD1_k127_5690947_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 365.0
LYD1_k127_5690947_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004376 289.0
LYD1_k127_5690947_2 Putative esterase K07017 - - 0.00000000000000000000000000000000000373 148.0
LYD1_k127_5690947_3 beta-lactamase - - - 0.000000000000000000000000000000262 124.0
LYD1_k127_5699176_0 Prokaryotic cytochrome b561 - - - 5.31e-299 923.0
LYD1_k127_5699176_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 2.164e-203 645.0
LYD1_k127_5699176_10 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000007082 61.0
LYD1_k127_5699176_11 ferroxidase activity K03594 GO:0003674,GO:0003824,GO:0004322,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033212,GO:0033214,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771 1.16.3.1 0.00001872 47.0
LYD1_k127_5699176_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 444.0
LYD1_k127_5699176_3 TIGR02757 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 306.0
LYD1_k127_5699176_4 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000000000001347 193.0
LYD1_k127_5699176_5 Reductase K06221 - 1.1.1.346 0.0000000000000000000000000000000000000000000001523 169.0
LYD1_k127_5699176_6 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000001522 103.0
LYD1_k127_5699176_7 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000001273 103.0
LYD1_k127_5699176_8 Glycosyl hydrolase family 63 C-terminal domain - - - 0.00000000000001845 72.0
LYD1_k127_5699176_9 dihydrofolate reductase activity - - - 0.0000000000003288 76.0
LYD1_k127_5708218_0 TonB-linked outer membrane protein, SusC RagA family - - - 0.0 1316.0
LYD1_k127_5708218_1 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 1.995e-230 720.0
LYD1_k127_5708218_10 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002364 248.0
LYD1_k127_5708218_11 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000002694 211.0
LYD1_k127_5708218_12 Protein of unknown function (DUF3795) - - - 0.00000000000000000000000000000000000006608 144.0
LYD1_k127_5708218_13 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852,K18478 - 2.7.1.15,2.7.1.184,2.7.1.4 0.00000000000000000000000003488 112.0
LYD1_k127_5708218_14 Antibiotic biosynthesis monooxygenase - GO:0003674,GO:0003824 - 0.00000000000000000002247 96.0
LYD1_k127_5708218_2 Oxidoreductase domain protein - - - 5.821e-212 667.0
LYD1_k127_5708218_3 Starch-binding associating with outer membrane K21572 - - 1.64e-201 639.0
LYD1_k127_5708218_4 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006881 597.0
LYD1_k127_5708218_5 PFAM carbohydrate kinase K00848,K00851,K00854,K00862 - 2.7.1.12,2.7.1.17,2.7.1.215,2.7.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 365.0
LYD1_k127_5708218_6 fructose-bisphosphate aldolase activity K01624,K08302 - 4.1.2.13,4.1.2.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 350.0
LYD1_k127_5708218_7 Pfam:DUF1498 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 293.0
LYD1_k127_5708218_8 Domain of unknown function (DUF4432) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 291.0
LYD1_k127_5708218_9 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003862 269.0
LYD1_k127_57280_0 Glucose inhibited division protein A K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1174.0
LYD1_k127_57280_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 3.413e-225 703.0
LYD1_k127_57280_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000004581 186.0
LYD1_k127_57280_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000002729 163.0
LYD1_k127_57280_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000000000000000000000000003101 146.0
LYD1_k127_57280_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 518.0
LYD1_k127_57280_3 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 467.0
LYD1_k127_57280_4 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 416.0
LYD1_k127_57280_5 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 410.0
LYD1_k127_57280_6 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004012 265.0
LYD1_k127_57280_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001234 267.0
LYD1_k127_57280_8 Part of a membrane complex involved in electron transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001339 261.0
LYD1_k127_57280_9 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000007219 209.0
LYD1_k127_5748423_0 bacterial-type flagellum-dependent cell motility - - - 2.654e-223 702.0
LYD1_k127_5748423_1 bacterial-type flagellum-dependent cell motility - - - 0.000000000000000000000000000000000000000000003706 166.0
LYD1_k127_5748423_2 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000446 108.0
LYD1_k127_5771187_0 Glycoside hydrolase, family 2, TIM barrel K01190 - 3.2.1.23 0.0 1398.0
LYD1_k127_5771187_1 Belongs to the glycosyl hydrolase 31 family K01811 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.177 0.0 1332.0
LYD1_k127_5771187_10 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 400.0
LYD1_k127_5771187_11 Dihydroorotate dehydrogenase K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 339.0
LYD1_k127_5771187_12 Alanine racemase, N-terminal domain K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002019 273.0
LYD1_k127_5771187_13 2-phosphosulpholactate phosphatase K05979 - 3.1.3.71 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001025 273.0
LYD1_k127_5771187_14 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003436 254.0
LYD1_k127_5771187_15 - - - - 0.00000000000000000000000000106 117.0
LYD1_k127_5771187_16 Parallel beta-helix repeats - - - 0.00000000000000000001531 96.0
LYD1_k127_5771187_17 - - - - 0.00000000001591 71.0
LYD1_k127_5771187_2 Glycosyl hydrolase family 3 K05349 - 3.2.1.21 0.0 1209.0
LYD1_k127_5771187_3 Glycosyl hydrolase family 9 - - - 0.0 1040.0
LYD1_k127_5771187_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 6.831e-232 722.0
LYD1_k127_5771187_5 Carbohydrate esterase, sialic acid-specific acetylesterase K05970 - 3.1.1.53 8.864e-209 668.0
LYD1_k127_5771187_6 Protein of unknown function (DUF1015) - - - 6.966e-200 629.0
LYD1_k127_5771187_7 Aminotransferase class-V K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 535.0
LYD1_k127_5771187_8 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 522.0
LYD1_k127_5771187_9 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009449 397.0
LYD1_k127_5826328_0 Domain of unknown function (DUF1846) - - - 3.069e-226 710.0
LYD1_k127_5826328_1 Initiation factor 2 subunit family K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008869 362.0
LYD1_k127_5826328_2 Phosphorylase superfamily K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006893 351.0
LYD1_k127_5826328_3 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000009561 218.0
LYD1_k127_5826328_4 ABC transporter, ATP-binding protein K02003 - - 0.000000000000000000000000000000000000000000000002589 182.0
LYD1_k127_5826328_5 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000001195 162.0
LYD1_k127_5826328_6 Flavin-binding monooxygenase-like K07222 - - 0.00000000000000000000000000000000006653 137.0
LYD1_k127_5896371_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 549.0
LYD1_k127_5896371_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008478 518.0
LYD1_k127_5896371_2 deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001787 262.0
LYD1_k127_5896371_3 RNA methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000001154 231.0
LYD1_k127_5953275_0 Integrase core domain K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000518 242.0
LYD1_k127_5953275_1 Transposase K07483,K07497 - - 0.000000000000000000000000000000000008897 140.0
LYD1_k127_5963388_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007221 596.0
LYD1_k127_5963388_1 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004317 336.0
LYD1_k127_5963388_2 CsbD-like - - - 0.00000000000000000001339 92.0
LYD1_k127_5963388_3 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000002995 76.0
LYD1_k127_5963388_4 - - - - 0.0000000000009754 74.0
LYD1_k127_5963388_5 helix_turn_helix, arabinose operon control protein - - - 0.00000000001647 65.0
LYD1_k127_6099102_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1325.0
LYD1_k127_6099102_1 Domain of unknown function (DUF3552) K18682 - - 6.834e-251 781.0
LYD1_k127_6099102_10 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 384.0
LYD1_k127_6099102_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 361.0
LYD1_k127_6099102_12 Nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 341.0
LYD1_k127_6099102_13 PFAM Phosphorylase superfamily K00757 - 2.4.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 306.0
LYD1_k127_6099102_14 Participates in the control of copper homeostasis K06201 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000349 248.0
LYD1_k127_6099102_15 Aspartate carbamoyltransferase regulatory chain, metal binding domain K00610 - - 0.000000000000000000000000000000000000000000000000000000000000001495 222.0
LYD1_k127_6099102_16 YigZ family - - - 0.0000000000000000000000000000000000000000000000000000000000006059 216.0
LYD1_k127_6099102_17 Chaperonin 10 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000002642 190.0
LYD1_k127_6099102_18 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000119 167.0
LYD1_k127_6099102_19 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000005955 150.0
LYD1_k127_6099102_2 Dipeptidase - - - 2.214e-211 671.0
LYD1_k127_6099102_20 Cell division protein ZapA K09888 - - 0.0000000000000000000000000000000142 128.0
LYD1_k127_6099102_21 manually curated - - - 0.0000000000000000000000000000005464 123.0
LYD1_k127_6099102_22 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000008235 122.0
LYD1_k127_6099102_23 Domain of unknown function (DUF4293) - - - 0.00000000000888 71.0
LYD1_k127_6099102_3 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 576.0
LYD1_k127_6099102_4 AsmA-like C-terminal region K07289 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000641 521.0
LYD1_k127_6099102_5 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 486.0
LYD1_k127_6099102_6 NAD dependent epimerase dehydratase family K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 452.0
LYD1_k127_6099102_7 UDP-N-acetylglucosamine 2-epimerase K13019 - 5.1.3.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 431.0
LYD1_k127_6099102_8 Peptidase, M23 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 436.0
LYD1_k127_6099102_9 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 403.0
LYD1_k127_6147757_0 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 340.0
LYD1_k127_6147757_1 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000008392 221.0
LYD1_k127_6184562_0 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 3.656e-286 891.0
LYD1_k127_6184562_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 3.12e-230 720.0
LYD1_k127_6184562_10 PFAM BlaR1 peptidase M56 - - - 0.0000000000000000000000000009318 119.0
LYD1_k127_6184562_11 - - - - 0.00000000000001394 76.0
LYD1_k127_6184562_2 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 500.0
LYD1_k127_6184562_3 Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 351.0
LYD1_k127_6184562_4 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 313.0
LYD1_k127_6184562_5 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000006231 253.0
LYD1_k127_6184562_6 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000002519 257.0
LYD1_k127_6184562_7 Binding-protein-dependent transport system inner membrane component K02050,K15577 - - 0.00000000000000000000000000000000000000000000000000000000000000008997 230.0
LYD1_k127_6184562_8 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.000000000000000000000000000000000000000000000000000002661 199.0
LYD1_k127_6184562_9 - - - - 0.0000000000000000000000000005855 120.0
LYD1_k127_6190789_0 hydrolase activity, hydrolyzing O-glycosyl compounds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 477.0
LYD1_k127_6190789_1 hydrolase, family 65, central catalytic K00691 - 2.4.1.8 0.00000000000000000000000000000000000000000002284 164.0
LYD1_k127_6190789_2 Belongs to the glycosyl hydrolase 13 family K21575 - 3.2.1.135 0.00000000000000002054 85.0
LYD1_k127_6206019_0 Belongs to the ribulokinase family K00853 - 2.7.1.16 3.091e-251 785.0
LYD1_k127_6206019_1 Beta-L-arabinofuranosidase, GH127 K09955 - - 2.488e-245 772.0
LYD1_k127_6206019_10 L-ribulose-5-phosphate 4-epimerase K03077 - 5.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 322.0
LYD1_k127_6206019_11 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 312.0
LYD1_k127_6206019_12 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008651 269.0
LYD1_k127_6206019_13 Psort location CytoplasmicMembrane, score 10.00 K12343 - 1.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000182 270.0
LYD1_k127_6206019_14 pfam nudix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002526 265.0
LYD1_k127_6206019_15 Ferritin-like domain K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000001182 245.0
LYD1_k127_6206019_16 PFAM OsmC family protein K09136 - - 0.0000000000000000000000000000000001367 136.0
LYD1_k127_6206019_17 Belongs to the Fur family K09825 - - 0.00000000000000000000000000000961 123.0
LYD1_k127_6206019_2 L-arabinose isomerase K01804 - 5.3.1.4 3.84e-217 683.0
LYD1_k127_6206019_3 Xylose isomerase K01805 GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 2.17e-215 675.0
LYD1_k127_6206019_4 Aminotransferase class-V - - - 4.829e-214 674.0
LYD1_k127_6206019_5 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 1.989e-204 650.0
LYD1_k127_6206019_6 Alpha-L-arabinofuranosidase K01209 - 3.2.1.55 1.466e-202 642.0
LYD1_k127_6206019_7 Carbohydrate kinase, FGGY family protein K00854 - 2.7.1.17 1.417e-201 638.0
LYD1_k127_6206019_8 PFAM natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 581.0
LYD1_k127_6206019_9 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 426.0
LYD1_k127_6206295_0 FAD-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 319.0
LYD1_k127_6206295_1 DoxX K15977 - - 0.0000000000000000000000000000000000000000001905 162.0
LYD1_k127_6206295_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000002062 126.0
LYD1_k127_6206295_3 CsbD-like - - - 0.000000000000000000005086 93.0
LYD1_k127_6206295_4 Methionine biosynthesis protein MetW - - - 0.00000000000000001486 92.0
LYD1_k127_6206295_5 COG NOG30576 non supervised orthologous group - - - 0.0003061 48.0
LYD1_k127_6220332_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1548.0
LYD1_k127_6220332_1 Sulfatase-modifying factor enzyme 1 - - - 4.706e-258 824.0
LYD1_k127_6220332_11 Belongs to the helicase family. UvrD subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008545 543.0
LYD1_k127_6220332_12 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 498.0
LYD1_k127_6220332_13 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 450.0
LYD1_k127_6220332_14 Major Facilitator Superfamily K02429 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 445.0
LYD1_k127_6220332_15 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 439.0
LYD1_k127_6220332_16 radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 439.0
LYD1_k127_6220332_17 Aldose 1-epimerase K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 409.0
LYD1_k127_6220332_18 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 410.0
LYD1_k127_6220332_19 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 393.0
LYD1_k127_6220332_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 1.165e-256 807.0
LYD1_k127_6220332_20 Transporter, major facilitator family protein K02429 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 396.0
LYD1_k127_6220332_21 Radical SAM protein K07139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 379.0
LYD1_k127_6220332_22 (2R)-phospho-3-sulfolactate synthase (ComA) K08097 - 4.4.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 329.0
LYD1_k127_6220332_23 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 328.0
LYD1_k127_6220332_24 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233 323.0
LYD1_k127_6220332_25 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 302.0
LYD1_k127_6220332_26 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001362 284.0
LYD1_k127_6220332_27 domain protein K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002297 285.0
LYD1_k127_6220332_28 PFAM Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001045 274.0
LYD1_k127_6220332_29 COG0169 Shikimate 5-dehydrogenase K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000001065 261.0
LYD1_k127_6220332_3 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 8.697e-239 752.0
LYD1_k127_6220332_30 Psort location Cytoplasmic, score 8.96 K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000001057 257.0
LYD1_k127_6220332_31 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000001755 241.0
LYD1_k127_6220332_32 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000002072 239.0
LYD1_k127_6220332_33 Tetratricopeptide repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000003476 232.0
LYD1_k127_6220332_34 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000000000000000000000000000000000000000000000001147 227.0
LYD1_k127_6220332_35 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000003246 196.0
LYD1_k127_6220332_36 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000001633 198.0
LYD1_k127_6220332_37 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000003025 199.0
LYD1_k127_6220332_38 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000009812 178.0
LYD1_k127_6220332_39 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000007003 169.0
LYD1_k127_6220332_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 6.306e-233 728.0
LYD1_k127_6220332_40 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000003247 169.0
LYD1_k127_6220332_41 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000000000000841 154.0
LYD1_k127_6220332_42 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.00000000000000000000000000000000000009497 147.0
LYD1_k127_6220332_43 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000002139 143.0
LYD1_k127_6220332_44 Domain of unknown function (DUF1987) - - - 0.00000000000000002255 88.0
LYD1_k127_6220332_45 Protein of unknown function (DUF721) - - - 0.000000000000001192 80.0
LYD1_k127_6220332_46 Peptidyl-prolyl cis-trans isomerase K01802,K03767 - 5.2.1.8 0.0000000000001473 77.0
LYD1_k127_6220332_47 - - - - 0.0000001736 60.0
LYD1_k127_6220332_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 2.872e-216 677.0
LYD1_k127_6220332_6 PD-(D/E)XK nuclease superfamily - - - 3.89e-197 648.0
LYD1_k127_6220332_7 Galactokinase galactose-binding signature K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 608.0
LYD1_k127_6220332_8 Psort location OuterMembrane, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 623.0
LYD1_k127_6220332_9 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 561.0
LYD1_k127_6233127_0 Pectate lyase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006578 364.0
LYD1_k127_6233127_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000009791 151.0
LYD1_k127_6233127_3 Melibiase K07407 - 3.2.1.22 0.0000001273 55.0
LYD1_k127_6233127_4 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00007076 54.0
LYD1_k127_6242203_0 Protein of unknown function (DUF2723) - - - 0.0 1028.0
LYD1_k127_6242203_1 ATP-binding cassette protein, ChvD family - - - 5.613e-291 901.0
LYD1_k127_6242203_10 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 304.0
LYD1_k127_6242203_11 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000001413 158.0
LYD1_k127_6242203_12 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000001447 118.0
LYD1_k127_6242203_13 ATP synthase K02114 - - 0.00000000000000000000004415 100.0
LYD1_k127_6242203_14 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000005509 100.0
LYD1_k127_6242203_15 Histidine kinase - - - 0.0000000000000000004899 93.0
LYD1_k127_6242203_16 - - - - 0.00000000000002646 78.0
LYD1_k127_6242203_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.559e-270 839.0
LYD1_k127_6242203_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.981e-258 802.0
LYD1_k127_6242203_4 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 604.0
LYD1_k127_6242203_5 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003209 489.0
LYD1_k127_6242203_6 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 358.0
LYD1_k127_6242203_7 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 359.0
LYD1_k127_6242203_8 Peptidase, M28 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 361.0
LYD1_k127_6242203_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 327.0
LYD1_k127_6242299_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 3.969e-262 817.0
LYD1_k127_6242299_1 Pfam Polysulphide reductase, NrfD K00185 - - 7.003e-211 662.0
LYD1_k127_6242299_10 Cytochrome C - - - 0.000000000000000000000000000000000000000000000001805 180.0
LYD1_k127_6242299_11 Quinol cytochrome c oxidoreductase membrane protein - - - 0.00000000000000000000000000000000000000298 152.0
LYD1_k127_6242299_12 - - - - 0.0000000000000000000000002319 109.0
LYD1_k127_6242299_13 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.0000000002066 65.0
LYD1_k127_6242299_2 Quinol cytochrome c oxidoreductase K00184 - - 2.232e-200 636.0
LYD1_k127_6242299_3 Quinol cytochrome c oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 436.0
LYD1_k127_6242299_4 Tannase and feruloyl esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 437.0
LYD1_k127_6242299_5 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 350.0
LYD1_k127_6242299_6 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000002003 260.0
LYD1_k127_6242299_7 signal sequence binding K07152 - - 0.000000000000000000000000000000000000000000000000000000000000004357 225.0
LYD1_k127_6242299_8 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000001017 209.0
LYD1_k127_6242299_9 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000002837 207.0
LYD1_k127_6265712_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.0 1196.0
LYD1_k127_6265712_1 Pfam Glycosyl hydrolases family 2, sugar binding domain - - - 0.0 1111.0
LYD1_k127_6265712_10 Aminotransferase class I and II K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 343.0
LYD1_k127_6265712_11 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 329.0
LYD1_k127_6265712_12 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001436 237.0
LYD1_k127_6265712_13 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.0000000000000000000000000000000000000000000000000000000002334 208.0
LYD1_k127_6265712_14 homoserine transmembrane transporter activity - - - 0.0000000000000000000000000000000000000007244 158.0
LYD1_k127_6265712_15 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07291 - 2.7.8.34 0.00000000000000000000000000000006538 136.0
LYD1_k127_6265712_16 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000001967 121.0
LYD1_k127_6265712_17 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.0000000000000000000002297 99.0
LYD1_k127_6265712_19 PFAM diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.00000000000001726 75.0
LYD1_k127_6265712_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0 1026.0
LYD1_k127_6265712_3 synthetase (ADP forming), alpha K01905,K22224 - 6.2.1.13 8.892e-302 940.0
LYD1_k127_6265712_4 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 1.675e-243 764.0
LYD1_k127_6265712_5 Belongs to the type-B carboxylesterase lipase family K03929 - - 1.86e-241 756.0
LYD1_k127_6265712_6 Tat pathway signal sequence domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009724 569.0
LYD1_k127_6265712_7 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 523.0
LYD1_k127_6265712_8 Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion K02564 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 3.5.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005061 373.0
LYD1_k127_6265712_9 Pfam Glycosyl hydrolases family 2, sugar binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 343.0
LYD1_k127_6267918_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 8.953e-242 760.0
LYD1_k127_6267918_1 Adenine deaminase C-terminal domain K01486 - 3.5.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 579.0
LYD1_k127_6267918_2 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 560.0
LYD1_k127_6267918_3 SMP-30 Gluconolaconase LRE-like K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 369.0
LYD1_k127_6267918_4 IA, variant 3 K07025,K20866 - 3.1.3.10 0.0000000000000000000000000000000000000000000003119 173.0
LYD1_k127_6267918_5 Uncharacterized conserved protein (DUF2196) - - - 0.0000000000000000001204 90.0
LYD1_k127_6267918_6 Aldo/keto reductase family - - - 0.00002419 46.0
LYD1_k127_6289562_0 Belongs to the glycosyl hydrolase 2 family K15855 - 3.2.1.165 1.298e-207 667.0
LYD1_k127_6289562_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01776,K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20,5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 526.0
LYD1_k127_6289562_2 Transglutaminase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006483 428.0
LYD1_k127_6289562_3 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 400.0
LYD1_k127_6289562_4 Cell wall-associated hydrolase (invasion-associated protein) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007103 295.0
LYD1_k127_6289562_5 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000001363 145.0
LYD1_k127_6309204_0 TonB-linked outer membrane protein, SusC RagA family - - - 1.414e-306 968.0
LYD1_k127_6309204_1 ribosylpyrimidine nucleosidase activity - - - 3.856e-292 939.0
LYD1_k127_6309204_10 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 291.0
LYD1_k127_6309204_11 IPT/TIG domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000431 258.0
LYD1_k127_6309204_12 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000007847 170.0
LYD1_k127_6309204_13 Melibiase - - - 0.0000000000000000000000000000000000001364 163.0
LYD1_k127_6309204_14 - - - - 0.0000000000000000000000000000000001669 134.0
LYD1_k127_6309204_15 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000001032 136.0
LYD1_k127_6309204_16 - - - - 0.0000000000000000000000000151 111.0
LYD1_k127_6309204_17 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000008042 121.0
LYD1_k127_6309204_18 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.0000000000000001835 80.0
LYD1_k127_6309204_19 Domain of unknown function (DUF4976) - - - 0.000005769 48.0
LYD1_k127_6309204_2 Domain of unknown function - - - 5.489e-204 646.0
LYD1_k127_6309204_20 - - - - 0.00008252 53.0
LYD1_k127_6309204_3 alpha-galactosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 608.0
LYD1_k127_6309204_4 Alpha galactosidase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 588.0
LYD1_k127_6309204_5 PFAM sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000969 560.0
LYD1_k127_6309204_6 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 533.0
LYD1_k127_6309204_7 Anaerobic sulfatase maturase K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 489.0
LYD1_k127_6309204_8 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 479.0
LYD1_k127_6309204_9 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 410.0
LYD1_k127_6309645_0 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family K02100,K03444,K08138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007768 381.0
LYD1_k127_6309645_1 Glycosyl hydrolases family 2, sugar binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 287.0
LYD1_k127_6322861_0 Carbamoyl-phosphate synthase (glutamine-hydrolyzing) K01955 - 6.3.5.5 0.0 1641.0
LYD1_k127_6322861_1 RQC K03654 - 3.6.4.12 0.0 1089.0
LYD1_k127_6322861_10 - - - - 0.0000006807 54.0
LYD1_k127_6322861_2 Arginosuccinate synthase K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 587.0
LYD1_k127_6322861_3 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 541.0
LYD1_k127_6322861_4 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 453.0
LYD1_k127_6322861_5 PFAM Aminotransferase class I and II K14155 - 4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009683 419.0
LYD1_k127_6322861_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003464 254.0
LYD1_k127_6322861_7 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000001352 223.0
LYD1_k127_6322861_8 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000025 168.0
LYD1_k127_6322861_9 Arginine repressor, DNA binding domain K03402 - - 0.0000000000000000000000001017 112.0
LYD1_k127_63633_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008339 430.0
LYD1_k127_63633_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762,K13421 - 2.4.2.10,4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 295.0
LYD1_k127_63633_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000002164 232.0
LYD1_k127_63633_3 biotin acetyl-CoA-carboxylase ligase K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000004758 178.0
LYD1_k127_63633_4 NUDIX domain - - - 0.0000000000000000000000000000000000001252 149.0
LYD1_k127_63633_6 Orotate phosphoribosyltransferase - - - 0.0000000000009422 74.0
LYD1_k127_6376719_0 glucosamine-6-phosphate deaminase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 512.0
LYD1_k127_6376719_1 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000755 245.0
LYD1_k127_6376719_2 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000000000005585 225.0
LYD1_k127_6376719_3 inositol monophosphate 1-phosphatase activity K01082,K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25,3.1.3.7 0.000000000000000000000000000000000000000002332 166.0
LYD1_k127_6376719_4 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000002056 120.0
LYD1_k127_6376719_5 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852,K18478 - 2.7.1.15,2.7.1.184,2.7.1.4 0.0000000004938 63.0
LYD1_k127_6446250_0 Iron hydrogenase small subunit K00123,K18332 - 1.12.1.3,1.17.1.9 9.64e-240 746.0
LYD1_k127_6446250_1 Thioredoxin-like [2Fe-2S] ferredoxin K18330 - 1.12.1.3 0.00000000000000000000000000000000000000000000000000000000000000000001272 236.0
LYD1_k127_6449543_0 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 6.069e-254 797.0
LYD1_k127_6449543_1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 390.0
LYD1_k127_6460213_0 4-phosphoerythronate dehydrogenase activity K00058 GO:0003674,GO:0003824,GO:0004617,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008219,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0012501,GO:0016053,GO:0016491,GO:0016597,GO:0016614,GO:0016616,GO:0019752,GO:0031406,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0047545,GO:0055114,GO:0070905,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 542.0
LYD1_k127_6460213_1 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 331.0
LYD1_k127_6460213_2 - - - - 0.000000000000000000000000000000000000000000002288 176.0
LYD1_k127_6460213_3 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000003424 148.0
LYD1_k127_6461278_0 Uncharacterised conserved protein (DUF2156) K14205 - 2.3.2.3 6.821e-236 749.0
LYD1_k127_6461278_1 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000000001468 115.0
LYD1_k127_6461278_2 Calcineurin-like phosphoesterase - - - 0.00000002365 59.0
LYD1_k127_6482780_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008514 251.0
LYD1_k127_6482780_1 short-chain dehydrogenase K07124 - - 0.0000000000000000000000000000000000000000000000000000009719 199.0
LYD1_k127_6503658_0 Polyphosphate kinase middle domain K00937 - 2.7.4.1 9.611e-227 721.0
LYD1_k127_6503658_1 pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 556.0
LYD1_k127_6503658_2 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 460.0
LYD1_k127_6503658_3 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000004888 253.0
LYD1_k127_6503658_4 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009814 240.0
LYD1_k127_6503658_5 DsrC like protein K11179 - - 0.000000000000000000000000000000000009934 138.0
LYD1_k127_6503658_6 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000002726 125.0
LYD1_k127_6503658_7 phosphohistidine phosphatase K08296 - - 0.000000000000000000001243 100.0
LYD1_k127_6503658_8 CHAD - - - 0.00001537 56.0
LYD1_k127_6503658_9 - - - - 0.0004055 49.0
LYD1_k127_6524509_0 Peptidase M16 K07263 - - 0.0 1056.0
LYD1_k127_6524509_1 - - - - 0.00005571 47.0
LYD1_k127_65408_0 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007945 603.0
LYD1_k127_65408_1 all-trans-retinol 13,14-reductase activity - - - 0.00000000000000000000000000000001984 127.0
LYD1_k127_65408_2 Histidine kinase - - - 0.00000000000000000000008522 114.0
LYD1_k127_6560364_0 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 2.115e-252 794.0
LYD1_k127_6560364_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.04e-250 794.0
LYD1_k127_6560364_10 (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 325.0
LYD1_k127_6560364_11 mRNA catabolic process K06950,K09163 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 297.0
LYD1_k127_6560364_12 TIGRFAM TIGR00268 family protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000251 261.0
LYD1_k127_6560364_13 Outer membrane protein transport protein (OMPP1/FadL/TodX) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001735 257.0
LYD1_k127_6560364_14 Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001811 246.0
LYD1_k127_6560364_15 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000000000001299 226.0
LYD1_k127_6560364_16 Glyoxalase-like domain K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000000000000003373 210.0
LYD1_k127_6560364_17 Carboxyl transferase domain - - - 0.0000000000000000000000000000000000000000000001678 171.0
LYD1_k127_6560364_18 WbqC-like protein - - - 0.0000000000000000000000000000000000000000000002444 173.0
LYD1_k127_6560364_19 Protein of unknown function (DUF3575) - - - 0.0000000000000000000000000000000000000000003002 168.0
LYD1_k127_6560364_2 Citrate lyase, alpha subunit (CitF) - - - 3.579e-237 742.0
LYD1_k127_6560364_20 Psort location Cytoplasmic, score - - - 0.00000000000000000001387 91.0
LYD1_k127_6560364_21 peptidase - - - 0.00000000001221 77.0
LYD1_k127_6560364_3 Isocitrate isopropylmalate dehydrogenase K00030,K00031,K00052 - 1.1.1.41,1.1.1.42,1.1.1.85 1.747e-196 618.0
LYD1_k127_6560364_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 562.0
LYD1_k127_6560364_5 Xaa-His dipeptidase K01270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 533.0
LYD1_k127_6560364_6 HpcH/HpaI aldolase/citrate lyase family K01644,K01646,K18292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0008815,GO:0009346,GO:0009987,GO:0015980,GO:0016829,GO:0016830,GO:0016833,GO:0032991,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003521 497.0
LYD1_k127_6560364_7 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 463.0
LYD1_k127_6560364_8 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007121 436.0
LYD1_k127_6560364_9 Tat pathway signal sequence domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009588 389.0
LYD1_k127_6587881_0 Domain of unknown function (DUF5009) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 410.0
LYD1_k127_6587881_1 Metal dependent phosphohydrolases with conserved 'HD' motif. K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000008843 157.0
LYD1_k127_6587881_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000001823 112.0
LYD1_k127_6587881_3 - - - - 0.000000000000000000001091 102.0
LYD1_k127_6587881_4 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.0000000000009018 70.0
LYD1_k127_6631490_0 Domain of unknown function (DUF4091) - - - 8.542e-273 850.0
LYD1_k127_6631490_1 Belongs to the glycosyl hydrolase 31 family K01187 - 3.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 613.0
LYD1_k127_6631490_2 Psort location Cytoplasmic, score 8.87 K02564 - 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007183 406.0
LYD1_k127_6631490_3 Methane oxygenase PmoA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002654 334.0
LYD1_k127_6631490_4 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 297.0
LYD1_k127_6631490_5 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000000000000001606 214.0
LYD1_k127_6631490_6 Enolase C-terminal domain-like - - - 0.000000000000000000000000000001479 125.0
LYD1_k127_667168_0 Fibronectin type 3 domain K21571 - - 0.0000000000000000000000000000000000000000000000000000000000000000001575 241.0
LYD1_k127_667168_1 Domain of unknown function (DUF4249) - - - 0.000000000000000000000000000000000000000000000007501 186.0
LYD1_k127_667168_2 Putative binding domain, N-terminal - - - 0.000000000000000000000000007646 129.0
LYD1_k127_667168_3 cellulose binding - - - 0.000000000000001105 92.0
LYD1_k127_667168_4 chitin catabolic process - - - 0.000003356 51.0
LYD1_k127_6726346_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 516.0
LYD1_k127_6726346_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 407.0
LYD1_k127_6726346_2 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00002591 50.0
LYD1_k127_681881_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01535 - 3.6.3.6 0.0 1095.0
LYD1_k127_681881_1 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 325.0
LYD1_k127_681881_2 (ABC) transporter K02471,K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000104 247.0
LYD1_k127_681881_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000004336 237.0
LYD1_k127_681881_4 Haem-binding domain - - - 0.00003435 52.0
LYD1_k127_6825742_0 Domain of unknown function (DUF3362) - - - 3.42e-249 782.0
LYD1_k127_6825742_1 Tetratricopeptide repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000332 574.0
LYD1_k127_6825742_2 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 359.0
LYD1_k127_684568_0 beta-1,4-mannooligosaccharide phosphorylase - - - 4.615e-225 706.0
LYD1_k127_684568_1 aldo-keto reductase (NADP) activity K05275 - 1.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 372.0
LYD1_k127_684568_2 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000105 150.0
LYD1_k127_684568_3 Nucleotidyltransferase domain K07075 - - 0.0000000000000000000000000000001882 126.0
LYD1_k127_684568_4 Protein of unknown function DUF86 - - - 0.0000000000000000009324 87.0
LYD1_k127_684568_5 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000105 77.0
LYD1_k127_684568_6 Protein of unknown function DUF86 - - - 0.0003485 46.0
LYD1_k127_711239_0 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 308.0
LYD1_k127_711239_1 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007563 249.0
LYD1_k127_711239_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000009806 185.0
LYD1_k127_715032_0 alpha-galactosidase - - - 1.565e-228 726.0
LYD1_k127_715032_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 546.0
LYD1_k127_715032_2 Psort location Cytoplasmic, score 8.87 K02564 - 3.5.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579 438.0
LYD1_k127_715032_3 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000008189 247.0
LYD1_k127_715032_4 conserved protein, contains double-stranded beta-helix domain K00450,K06720 - 1.13.11.4,4.2.1.108 0.00000000000000000000000000000000001939 137.0
LYD1_k127_715032_5 CarboxypepD_reg-like domain - - - 0.0000000000000000000002181 101.0
LYD1_k127_715032_6 - - - - 0.0000000000002282 80.0
LYD1_k127_724616_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1277.0
LYD1_k127_724616_1 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 559.0
LYD1_k127_724616_10 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00008123 52.0
LYD1_k127_724616_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 543.0
LYD1_k127_724616_3 FAD binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 383.0
LYD1_k127_724616_4 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 363.0
LYD1_k127_724616_5 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 333.0
LYD1_k127_724616_6 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 303.0
LYD1_k127_724616_7 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001739 253.0
LYD1_k127_724616_8 PAP2 superfamily K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000011 181.0
LYD1_k127_724616_9 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000002361 129.0
LYD1_k127_727628_0 TonB dependent receptor - - - 0.0 1354.0
LYD1_k127_727628_1 aconitate hydratase K01681 - 4.2.1.3 0.0 1071.0
LYD1_k127_727628_10 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000003418 210.0
LYD1_k127_727628_11 COGs COG4299 conserved - - - 0.000000000000000005052 86.0
LYD1_k127_727628_12 tetratricopeptide repeat - - - 0.000000007057 65.0
LYD1_k127_727628_13 Transposase IS200 like - - - 0.0000005713 53.0
LYD1_k127_727628_14 TIR domain - - - 0.0001174 55.0
LYD1_k127_727628_2 cellulose binding - - - 2.462e-223 718.0
LYD1_k127_727628_3 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 1.858e-203 640.0
LYD1_k127_727628_4 Citrate synthase, C-terminal domain K01647,K01659 - 2.3.3.1,2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 590.0
LYD1_k127_727628_5 Pfam:SusD K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 541.0
LYD1_k127_727628_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009288 520.0
LYD1_k127_727628_7 Malate:quinone oxidoreductase (Mqo) K00116 - 1.1.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 504.0
LYD1_k127_727628_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 362.0
LYD1_k127_727628_9 peptide catabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000104 269.0
LYD1_k127_747234_0 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000408 556.0
LYD1_k127_747234_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 493.0
LYD1_k127_747234_2 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001001 274.0
LYD1_k127_747234_3 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000000000000000000000001494 191.0
LYD1_k127_747234_4 Desulfoferrodoxin ferrous iron-binding K05919 - 1.15.1.2 0.000000000000000000000000000000000000000000738 160.0
LYD1_k127_747234_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000003223 70.0
LYD1_k127_756198_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 1.608e-273 854.0
LYD1_k127_756198_1 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 2.577e-200 631.0
LYD1_k127_756198_10 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007706 316.0
LYD1_k127_756198_11 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006052 287.0
LYD1_k127_756198_12 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005476 302.0
LYD1_k127_756198_13 LytTr DNA-binding domain K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006824 275.0
LYD1_k127_756198_14 Outer membrane lipoprotein-sorting protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001262 274.0
LYD1_k127_756198_15 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001923 282.0
LYD1_k127_756198_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002632 278.0
LYD1_k127_756198_17 MoeZ MoeB domain K21029,K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000001991 261.0
LYD1_k127_756198_18 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000007372 235.0
LYD1_k127_756198_19 AsmA-like C-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000003773 251.0
LYD1_k127_756198_2 Peptidase family U32 K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 557.0
LYD1_k127_756198_20 Phospholipid methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000003865 225.0
LYD1_k127_756198_21 Rhodanese Homology Domain K06917 - - 0.00000000000000000000000000000000000000000000000000000000225 207.0
LYD1_k127_756198_22 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000000000000000000000789 203.0
LYD1_k127_756198_23 COG COG1387 Histidinol phosphatase and related hydrolases of the PHP family K04486 - 3.1.3.15 0.00000000000000000000000000000000000000000000000000004622 196.0
LYD1_k127_756198_24 Cell wall-active antibiotics response 4TMS YvqF - - - 0.00000000000000000000000000000000000000000000001862 181.0
LYD1_k127_756198_25 Uncharacterized ACR, COG1399 - - - 0.00000000000000000000000000000000000002074 150.0
LYD1_k127_756198_26 Rhodanese-like domain K06917 - - 0.0000000000000000000000000000000001884 135.0
LYD1_k127_756198_27 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000004786 135.0
LYD1_k127_756198_28 - - - - 0.000000000000000000000000000000001936 141.0
LYD1_k127_756198_29 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000001354 120.0
LYD1_k127_756198_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0071704 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 512.0
LYD1_k127_756198_30 Ribosomal L32p protein family K02911 - - 0.00000000000000000000000002345 108.0
LYD1_k127_756198_31 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000008889 100.0
LYD1_k127_756198_32 - - - - 0.000000000000000948 89.0
LYD1_k127_756198_33 Probably functions as a manganese efflux pump - - - 0.0000000000415 64.0
LYD1_k127_756198_34 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0000001658 55.0
LYD1_k127_756198_35 membrane protein (DUF2154) - - - 0.0004719 48.0
LYD1_k127_756198_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 374.0
LYD1_k127_756198_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 362.0
LYD1_k127_756198_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 344.0
LYD1_k127_756198_7 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 325.0
LYD1_k127_756198_8 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 324.0
LYD1_k127_756198_9 Putative neutral zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 308.0
LYD1_k127_772183_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1373.0
LYD1_k127_772183_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 592.0
LYD1_k127_772183_10 - - - - 0.0000000003827 66.0
LYD1_k127_772183_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 403.0
LYD1_k127_772183_3 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 385.0
LYD1_k127_772183_4 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 321.0
LYD1_k127_772183_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003549 302.0
LYD1_k127_772183_6 Formyl transferase K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000001073 244.0
LYD1_k127_772183_7 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000000001221 209.0
LYD1_k127_772183_8 30S ribosomal protein S23 - - - 0.00000000000000000000000000000000000000000000000001076 183.0
LYD1_k127_772183_9 Phosphopantetheine attachment site K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000004911 137.0
LYD1_k127_793316_0 Transposase (IS116 IS110 IS902 family) K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005236 412.0
LYD1_k127_793316_1 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0002298 44.0
LYD1_k127_813816_0 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 5.009e-222 700.0
LYD1_k127_813816_1 Glutamine amidotransferase domain K00764 - 2.4.2.14 1.795e-211 665.0
LYD1_k127_813816_10 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000000000000003908 231.0
LYD1_k127_813816_11 Phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000001865 236.0
LYD1_k127_813816_12 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000002892 219.0
LYD1_k127_813816_13 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000004801 215.0
LYD1_k127_813816_14 nucleotide phosphatase activity, acting on free nucleotides K00943,K02013,K02017,K03574,K03752,K06928 - 2.7.4.9,2.7.7.77,3.6.1.15,3.6.1.55,3.6.3.29,3.6.3.34 0.0000000000000000000000000000000000000000000000000000000004097 223.0
LYD1_k127_813816_15 nuclear chromosome segregation - - - 0.0000000000000000000000000000000000000000000000000000155 199.0
LYD1_k127_813816_16 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000002796 185.0
LYD1_k127_813816_17 Transcriptional regulator - - - 0.00000000000000000000000000000000000007517 146.0
LYD1_k127_813816_18 Putative heavy-metal chelation - - - 0.00000000000000000000000000000000001199 146.0
LYD1_k127_813816_19 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000001262 111.0
LYD1_k127_813816_2 Natural resistance-associated macrophage protein K03322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 559.0
LYD1_k127_813816_20 YCII-related domain K09780 - - 0.00000000000000000000000002271 111.0
LYD1_k127_813816_21 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00000000001114 70.0
LYD1_k127_813816_22 Protein of unknown function (DUF3795) - - - 0.000000002702 59.0
LYD1_k127_813816_3 Tat pathway signal sequence domain protein K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 512.0
LYD1_k127_813816_4 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 428.0
LYD1_k127_813816_5 Streptomycin adenylyltransferase K05593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 421.0
LYD1_k127_813816_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008232 404.0
LYD1_k127_813816_7 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 370.0
LYD1_k127_813816_8 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009332 348.0
LYD1_k127_813816_9 creatininase K01470 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 324.0
LYD1_k127_832341_0 Belongs to the glycosyl hydrolase 2 family - - - 0.0 1331.0
LYD1_k127_832341_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0 1244.0
LYD1_k127_832341_10 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 307.0
LYD1_k127_832341_11 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004701 254.0
LYD1_k127_832341_12 Periplasmic copper-binding protein (NosD) - - - 0.00000000000000000000000000000000000000000000000000000000000000000002953 248.0
LYD1_k127_832341_13 TrkA-N domain K03499 - - 0.000000000000000000000000000000000000000000000000005347 188.0
LYD1_k127_832341_14 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000000000000000000000001327 153.0
LYD1_k127_832341_15 Sporulation related domain - - - 0.00000000000000000002643 96.0
LYD1_k127_832341_16 nickel cation binding K04651 - - 0.00000000000006612 76.0
LYD1_k127_832341_17 Glycosyl hydrolases family 35 - - - 0.00000002141 57.0
LYD1_k127_832341_2 Serine hydroxymethyltransferase K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 564.0
LYD1_k127_832341_3 Putative Phosphatase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007537 530.0
LYD1_k127_832341_4 SIS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 451.0
LYD1_k127_832341_5 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 434.0
LYD1_k127_832341_6 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 389.0
LYD1_k127_832341_7 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 383.0
LYD1_k127_832341_8 PFAM Cation transport protein K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 386.0
LYD1_k127_832341_9 polysaccharide deacetylase K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 335.0
LYD1_k127_8436_0 PFAM PQQ enzyme repeat - - - 0.0000000000000000000000000000000000000000000000001385 191.0
LYD1_k127_8436_1 gluconolactonase activity K01053,K13735 - 3.1.1.17 0.0000000000000000000000008925 108.0
LYD1_k127_857770_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 8.726e-266 842.0
LYD1_k127_857770_1 COG0798 Arsenite efflux pump ACR3 and related K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007697 586.0
LYD1_k127_857770_10 Glycine cleavage system H protein K02437 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 347.0
LYD1_k127_857770_11 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 343.0
LYD1_k127_857770_12 cytochrome c biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 331.0
LYD1_k127_857770_13 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005703 334.0
LYD1_k127_857770_14 phosphate ABC transporter, permease K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 323.0
LYD1_k127_857770_15 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 323.0
LYD1_k127_857770_16 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 321.0
LYD1_k127_857770_17 CO dehydrogenase/acetyl-CoA synthase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 306.0
LYD1_k127_857770_18 glucosylceramidase activity K01201 GO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001491 287.0
LYD1_k127_857770_19 pyrroline-5-carboxylate reductase activity K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000145 267.0
LYD1_k127_857770_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 526.0
LYD1_k127_857770_20 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001726 283.0
LYD1_k127_857770_21 Metallo-beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000431 229.0
LYD1_k127_857770_22 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000002469 202.0
LYD1_k127_857770_23 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000000000003516 190.0
LYD1_k127_857770_24 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.0000000000000000000000000000000000000000000000005961 180.0
LYD1_k127_857770_25 DGC domain - - - 0.00000000000000000000000000000000000000000000001755 174.0
LYD1_k127_857770_27 PFAM Neutral alkaline nonlysosomal ceramidase - - - 0.0000000000000000000000000000000000000000000001308 185.0
LYD1_k127_857770_28 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000001268 157.0
LYD1_k127_857770_29 Transcriptional regulator - - - 0.0000000000000000000000000000000000000008758 151.0
LYD1_k127_857770_3 TIGRFAM sulfate adenylyltransferase, small subunit K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 477.0
LYD1_k127_857770_30 DGC domain - - - 0.0000000000000000000000000000000000007311 142.0
LYD1_k127_857770_31 Cytochrome c - - - 0.0000000000000000000000000000000002236 145.0
LYD1_k127_857770_32 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000006374 133.0
LYD1_k127_857770_33 - - - - 0.0000000000000000000000000000004556 127.0
LYD1_k127_857770_34 4Fe-4S binding domain - - - 0.00000000000000000000000000002962 120.0
LYD1_k127_857770_35 tRNA_anti-like - - - 0.0000000000000000000000008212 109.0
LYD1_k127_857770_36 redox-active disulfide protein 2 - - - 0.00000000000000000000000528 103.0
LYD1_k127_857770_37 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000002363 101.0
LYD1_k127_857770_38 Outer membrane protein beta-barrel domain - - - 0.000000000000000000003739 103.0
LYD1_k127_857770_39 protein-disulfide reductase activity - - - 0.000000000000000001618 98.0
LYD1_k127_857770_4 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 469.0
LYD1_k127_857770_40 - - - - 0.000000000000000009085 84.0
LYD1_k127_857770_41 Cytochrome c - - - 0.000000000000004932 81.0
LYD1_k127_857770_43 Ankyrin repeats (many copies) K06015,K06867,K06886 - 3.5.1.81 0.00001673 56.0
LYD1_k127_857770_5 Cys/Met metabolism PLP-dependent enzyme K19715 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0016051,GO:0043170,GO:0044238,GO:0071704,GO:1901576 2.6.1.109 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005702 443.0
LYD1_k127_857770_6 Mechanosensitive ion channel K05802 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 420.0
LYD1_k127_857770_7 Bacterial extracellular solute-binding protein K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 370.0
LYD1_k127_857770_8 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 357.0
LYD1_k127_857770_9 exo-alpha-(2->6)-sialidase activity K01186 GO:0001573,GO:0003674,GO:0003824,GO:0004308,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006687,GO:0006689,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0016020,GO:0016042,GO:0016052,GO:0016787,GO:0016798,GO:0016997,GO:0019377,GO:0030149,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044464,GO:0046466,GO:0046479,GO:0046514,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509 3.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 351.0
LYD1_k127_869465_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0 1057.0
LYD1_k127_869465_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 578.0
LYD1_k127_869465_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000963 478.0
LYD1_k127_869465_3 Psort location OuterMembrane, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 377.0
LYD1_k127_869465_4 HlyD membrane-fusion protein of T1SS - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004879 349.0
LYD1_k127_869465_5 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 285.0
LYD1_k127_869465_6 mttA/Hcf106 family K03116 - - 0.000000000000000422 83.0
LYD1_k127_89857_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007467 377.0
LYD1_k127_89857_1 COGs COG5616 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 328.0
LYD1_k127_89857_2 Involved in the TonB-independent uptake of proteins K03641 - - 0.00002192 52.0
LYD1_k127_927241_0 Amidohydrolase family - - - 8.419e-207 657.0
LYD1_k127_927241_1 Efflux transporter, RND family, MFP subunit K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 488.0
LYD1_k127_927241_2 Magnesium chelatase, subunit ChlI - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 392.0
LYD1_k127_927241_3 bacteriocin export ABC transporter, lactococcin 972 group K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004652 359.0
LYD1_k127_927241_4 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000009343 224.0
LYD1_k127_927241_5 Fe-S-cluster oxidoreductase - - - 0.00000000000000000000000000000005128 126.0
LYD1_k127_97874_0 Glycosyl hydrolase family 36 N-terminal domain K07407 - 3.2.1.22 1.855e-311 969.0
LYD1_k127_97874_1 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 1.874e-293 914.0
LYD1_k127_97874_10 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 473.0
LYD1_k127_97874_11 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 474.0
LYD1_k127_97874_12 succinate dehydrogenase K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 372.0
LYD1_k127_97874_13 Belongs to the glycosyl hydrolase family 6 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006425 340.0
LYD1_k127_97874_14 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 344.0
LYD1_k127_97874_15 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001188 283.0
LYD1_k127_97874_16 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001574 263.0
LYD1_k127_97874_17 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000000000000006335 236.0
LYD1_k127_97874_18 Acetyltransferase (GNAT) domain K03828 - - 0.0000000000000000000000000000000000000000000000000000000000000002152 224.0
LYD1_k127_97874_19 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000000003007 231.0
LYD1_k127_97874_2 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 6.585e-280 865.0
LYD1_k127_97874_20 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000000000000000000000003237 219.0
LYD1_k127_97874_21 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000003385 212.0
LYD1_k127_97874_22 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000001514 200.0
LYD1_k127_97874_23 Ndr family - - - 0.00000000000000000000000000000000000000000000000000000006018 205.0
LYD1_k127_97874_24 - - - - 0.000000000000000000000000000000000000000000000000000002188 199.0
LYD1_k127_97874_25 TIGRFAM succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 - - 0.0000000000000000000000000000000000000000000000001279 184.0
LYD1_k127_97874_26 lyase activity - - - 0.00000000000000000000000006799 123.0
LYD1_k127_97874_27 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000000000841 107.0
LYD1_k127_97874_28 cheY-homologous receiver domain - - - 0.000000000000000000000001707 106.0
LYD1_k127_97874_29 Tetratricopeptide repeat - - - 0.000000000000000000002553 106.0
LYD1_k127_97874_3 PFAM TonB-dependent Receptor Plug - - - 5.071e-247 792.0
LYD1_k127_97874_30 Domain of unknown function (DUF4249) - - - 0.0000000000000000006648 93.0
LYD1_k127_97874_31 - - - - 0.00000003286 64.0
LYD1_k127_97874_4 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 3.514e-218 688.0
LYD1_k127_97874_5 Carbohydrate family 9 binding domain-like - - - 3.371e-197 646.0
LYD1_k127_97874_6 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 565.0
LYD1_k127_97874_7 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 548.0
LYD1_k127_97874_8 PFAM Glycosyl transferase family 2 K00786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 533.0
LYD1_k127_97874_9 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 518.0
LYD1_k127_982209_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388,K12527 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,1.97.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 580.0
LYD1_k127_982209_1 Cytochrome b(N-terminal)/b6/petB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003217 277.0
LYD1_k127_982209_10 Cytochrome c - - - 0.00000001257 60.0
LYD1_k127_982209_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000009336 229.0
LYD1_k127_982209_3 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000000000000000000000297 182.0
LYD1_k127_982209_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000007361 169.0
LYD1_k127_982209_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000001931 156.0
LYD1_k127_982209_6 Putative beta-lactamase-inhibitor-like, PepSY-like - - - 0.00000000000000000000000000000001531 132.0
LYD1_k127_982209_7 - - - - 0.0000000000000000000000000000003918 130.0
LYD1_k127_982209_8 Cytochrome b(C-terminal)/b6/petD - - - 0.0000000000000000000000000001138 124.0
LYD1_k127_982209_9 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.000000000000000000003563 100.0
LYD1_k127_993093_0 Major Facilitator Superfamily K02429 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 489.0
LYD1_k127_993093_1 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 340.0
LYD1_k127_993093_10 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000001823 112.0
LYD1_k127_993093_2 Oxidoreductase NAD-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 314.0
LYD1_k127_993093_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003932 289.0
LYD1_k127_993093_4 Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0006950,GO:0006979,GO:0008150,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0050896 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001863 269.0
LYD1_k127_993093_5 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001933 273.0
LYD1_k127_993093_6 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000005934 204.0
LYD1_k127_993093_7 PspC domain protein K03973 - - 0.0000000000000000000000000000000000000000000000000001863 205.0
LYD1_k127_993093_8 PspC domain K03973 - - 0.0000000000000000000000000000000000000000000002346 173.0
LYD1_k127_993093_9 Transcriptional regulator PadR-like family K10947 - - 0.0000000000000000000000000000000000000000000002568 169.0