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Overview

ID MAG02033
Name LYD1_bin.17
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Planctomycetota
Class Phycisphaerae
Order Sedimentisphaerales
Family Anaerobacaceae
Genus GCA-020343675
Species
Assembly information
Completeness (%) 61.92
Contamination (%) 0.36
GC content (%) 58.0
N50 (bp) 5,405
Genome size (bp) 2,336,134

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1991

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1015265_0 dehydrogenases and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 336.0
LYD1_k127_1015265_1 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 336.0
LYD1_k127_1022734_0 chelatase, subunit chli K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 503.0
LYD1_k127_1022734_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000633 248.0
LYD1_k127_1022734_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000376 169.0
LYD1_k127_1022734_3 nickel-responsive regulator K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000006916 143.0
LYD1_k127_1022734_4 Alternative locus ID K06995 - - 0.0000000000000000000000000138 112.0
LYD1_k127_1022734_5 PFAM Magnesium chelatase, subunit ChlI K07391 - - 0.000001289 51.0
LYD1_k127_1022734_6 STAS domain - - - 0.00008779 49.0
LYD1_k127_1023464_0 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004431 407.0
LYD1_k127_1023464_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000001837 231.0
LYD1_k127_1023464_2 Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX K17759 - 5.1.99.6 0.00000000000000000000000000000000000000000000000001877 187.0
LYD1_k127_1023464_3 DNA recombination K03497,K13582 - - 0.00000000000000000000000001362 123.0
LYD1_k127_1042654_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000002204 151.0
LYD1_k127_1042654_1 PFAM Glucosamine-6-phosphate isomerases 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.000000000000000001032 91.0
LYD1_k127_1044647_0 Protein of unknown function (DUF2752) - - - 0.0000002827 57.0
LYD1_k127_1044647_1 metallopeptidase activity K01126,K01181 - 3.1.4.46,3.2.1.8 0.0004972 52.0
LYD1_k127_1052195_0 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000000000174 199.0
LYD1_k127_1052195_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000829 146.0
LYD1_k127_1052195_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000003695 125.0
LYD1_k127_1052195_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000004263 121.0
LYD1_k127_1052195_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000001135 79.0
LYD1_k127_1052195_5 Sigma-70 region 2 K03088 - - 0.0000000000007072 76.0
LYD1_k127_1052195_6 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000003874 53.0
LYD1_k127_1057328_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 586.0
LYD1_k127_1057328_1 3-dehydroquinate synthase (EC 4.6.1.3) K11646 - 1.4.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 353.0
LYD1_k127_1057328_2 MgtC family K07507 - - 0.0000007645 51.0
LYD1_k127_1057328_3 Domain of Unknown Function (DUF1080) - - - 0.00001006 58.0
LYD1_k127_1058749_0 Protein of unknown function (DUF3604) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 306.0
LYD1_k127_1058749_1 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.0000000000000000000000000000000000552 150.0
LYD1_k127_1058749_2 Domain of unknown function (DUF2088) - - - 0.0000000000000009608 83.0
LYD1_k127_1090406_0 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007817 274.0
LYD1_k127_1090406_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000001772 237.0
LYD1_k127_1090406_2 peptidase - - - 0.00000000000000000000000000000000000000001023 169.0
LYD1_k127_1090406_3 Calx-beta domain - - - 0.000000000000000000000000000000000001044 154.0
LYD1_k127_1090406_4 phosphorelay signal transduction system - - - 0.000000000000004975 76.0
LYD1_k127_1113283_0 Flavodoxin-like fold K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 319.0
LYD1_k127_1113283_1 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000001378 161.0
LYD1_k127_1131238_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 2.174e-221 706.0
LYD1_k127_1131238_1 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 9.311e-212 680.0
LYD1_k127_1131238_2 PFAM Acetyl-CoA hydrolase transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 492.0
LYD1_k127_1131238_3 PFAM histone deacetylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005208 315.0
LYD1_k127_1131238_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 297.0
LYD1_k127_1131238_5 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007398 263.0
LYD1_k127_1131238_6 PFAM Acetyl-CoA hydrolase transferase - - - 0.000000000000000000000000000000000000000000000000000000005111 206.0
LYD1_k127_1131238_8 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000004188 89.0
LYD1_k127_1139884_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001056 298.0
LYD1_k127_1139884_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001063 262.0
LYD1_k127_1139884_2 Peptidase family M48 - - - 0.000000000000000000000000000000000001195 149.0
LYD1_k127_1139884_3 PhoQ Sensor - - - 0.00000000000000000000000006892 124.0
LYD1_k127_1142564_0 arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 594.0
LYD1_k127_1142564_1 amino acid activation for nonribosomal peptide biosynthetic process K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 593.0
LYD1_k127_1143143_0 Fibronectin type III domain protein - - - 0.00000000000000000000000000000000000002021 166.0
LYD1_k127_1143143_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000001059 103.0
LYD1_k127_1143143_2 - - - - 0.0000000000000000000552 100.0
LYD1_k127_1143143_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000274 76.0
LYD1_k127_1143143_4 Putative adhesin - - - 0.0000000002117 72.0
LYD1_k127_1143143_5 FecR protein - - - 0.00001927 58.0
LYD1_k127_1160369_0 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 384.0
LYD1_k127_1160369_1 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001917 288.0
LYD1_k127_1160369_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009406 276.0
LYD1_k127_1160369_3 PFAM Appr-1-p processing domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001383 231.0
LYD1_k127_1160369_4 Rubrerythrin - - - 0.00000000000000009053 87.0
LYD1_k127_1160855_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 1.717e-200 638.0
LYD1_k127_1160855_1 Alpha-L-fucosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 417.0
LYD1_k127_116417_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 439.0
LYD1_k127_116417_1 phosphate acetyltransferase K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 370.0
LYD1_k127_1166872_0 glucosamine-6-phosphate deaminase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 495.0
LYD1_k127_1166872_1 xylose isomerase activity K01805 - 5.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 396.0
LYD1_k127_1166872_2 LmbE homologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000005877 244.0
LYD1_k127_1166872_3 pfkB family carbohydrate kinase - - - 0.0000001057 63.0
LYD1_k127_1201127_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 547.0
LYD1_k127_1201127_1 protein transport K03210 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031522,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000001647 76.0
LYD1_k127_1201127_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000002566 59.0
LYD1_k127_1215860_0 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000003157 180.0
LYD1_k127_1215860_1 DJ-1/PfpI family - - - 0.000000000000000000000004144 102.0
LYD1_k127_1215860_2 Tetratricopeptide repeat - - - 0.0000000000005777 81.0
LYD1_k127_1235299_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 5.92e-272 852.0
LYD1_k127_1235299_1 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009954 488.0
LYD1_k127_1235299_2 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004175 430.0
LYD1_k127_1235299_3 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000003966 243.0
LYD1_k127_1235299_4 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000000007975 143.0
LYD1_k127_1235299_5 The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity) K00382 - 1.8.1.4 0.0000000000000000000000000000911 120.0
LYD1_k127_1235299_6 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000007791 111.0
LYD1_k127_1235299_7 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000007641 74.0
LYD1_k127_1239870_0 COG1073 Hydrolases of the alpha beta superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 609.0
LYD1_k127_1239870_1 Pectate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 447.0
LYD1_k127_1239870_2 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008405 321.0
LYD1_k127_1239870_3 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001057 278.0
LYD1_k127_1239870_4 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000008869 189.0
LYD1_k127_1239870_5 General secretion pathway protein F K02455,K02653 - - 0.0000000000000000000009808 107.0
LYD1_k127_1239870_6 creatininase K01470 - 3.5.2.10 0.000000000000000000005924 105.0
LYD1_k127_1239870_7 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000006501 84.0
LYD1_k127_1240761_0 unsaturated chondroitin disaccharide hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007197 266.0
LYD1_k127_1240761_1 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K01838 - 5.4.2.6 0.0000000000000000000000000000000000000000000000000001906 193.0
LYD1_k127_1240761_2 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.00000000000000000000000000000000000000000000000001251 191.0
LYD1_k127_1240761_3 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000002094 177.0
LYD1_k127_1240761_4 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000003226 162.0
LYD1_k127_126906_0 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 369.0
LYD1_k127_126906_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 349.0
LYD1_k127_126906_2 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000002679 229.0
LYD1_k127_126906_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000005701 232.0
LYD1_k127_126906_4 Histidine kinase K07675,K09684 - 2.7.13.3 0.000000000000000000000000000000000000000000000003086 192.0
LYD1_k127_126906_5 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K18827 - 2.1.1.222,2.1.1.294,2.1.1.64,2.7.1.181 0.00000000000000000000000000000000000518 146.0
LYD1_k127_126906_6 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000002436 150.0
LYD1_k127_126906_7 Methyltransferase domain - - - 0.00000000000000000000000001092 119.0
LYD1_k127_126906_8 PFAM Methyltransferase type 11 - - - 0.0000000000127 74.0
LYD1_k127_1282367_0 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002749 274.0
LYD1_k127_1282367_1 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006613 263.0
LYD1_k127_1282367_2 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000001405 89.0
LYD1_k127_1282367_3 arylsulfatase activity - - - 0.000000002706 70.0
LYD1_k127_1282367_4 Domain of unknown function (DUF4185) - - - 0.000000395 63.0
LYD1_k127_1282367_5 pathogenesis - - - 0.00005746 56.0
LYD1_k127_1313320_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008601 436.0
LYD1_k127_1313320_1 Pectate lyase K01728 - 4.2.2.2 0.00000000000000000000002916 104.0
LYD1_k127_1322663_0 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 289.0
LYD1_k127_1322663_1 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000001539 190.0
LYD1_k127_1322663_2 Belongs to the mandelate racemase muconate lactonizing enzyme family K18983 - 5.5.1.27 0.0000000000000000000000000000000002103 138.0
LYD1_k127_1322663_3 Right handed beta helix region - - - 0.0003245 49.0
LYD1_k127_1325523_0 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 321.0
LYD1_k127_1328082_0 May be the GTPase, regulating ATP sulfurylase activity K00955 - 2.7.1.25,2.7.7.4 1.452e-206 661.0
LYD1_k127_1328082_1 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K00366,K00392 - 1.7.7.1,1.8.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 593.0
LYD1_k127_1328082_10 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000000000004979 95.0
LYD1_k127_1328082_11 thiamine biosynthesis protein ThiS K03154 - - 0.0000000000000000001964 89.0
LYD1_k127_1328082_12 PFAM Phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.000000001734 58.0
LYD1_k127_1328082_2 PFAM Cys Met metabolism K01740 - 2.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000687 450.0
LYD1_k127_1328082_3 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007695 419.0
LYD1_k127_1328082_4 ThiF family K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 372.0
LYD1_k127_1328082_5 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K12339,K21148 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0033847,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.113,2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004448 372.0
LYD1_k127_1328082_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008122 269.0
LYD1_k127_1328082_7 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000002042 274.0
LYD1_k127_1328082_8 PFAM Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001028 271.0
LYD1_k127_1328082_9 SMART Mov34 MPN PAD-1 family protein K21140 - 3.13.1.6 0.00000000000000000000000000000000000000002476 156.0
LYD1_k127_1330273_0 Acetyl xylan esterase (AXE1) - - - 2.568e-194 629.0
LYD1_k127_1330273_1 Trehalose utilisation K09992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 315.0
LYD1_k127_1330273_2 Predicted metal-binding protein (DUF2284) - - - 0.00000000000000000000000005837 109.0
LYD1_k127_1332237_0 COG2804 Type II secretory pathway ATPase PulE Tfp pilus assembly pathway ATPase PilB K02652 - - 1.008e-197 632.0
LYD1_k127_1332237_1 Type II secretion system (T2SS), protein F K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003992 254.0
LYD1_k127_1332237_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004237 250.0
LYD1_k127_1332237_3 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000004885 229.0
LYD1_k127_1332237_4 Response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000253 108.0
LYD1_k127_1332237_5 STAS domain K04749 - - 0.00000001267 61.0
LYD1_k127_1332237_6 Pectate lyase - - - 0.000001558 58.0
LYD1_k127_1336437_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004855 463.0
LYD1_k127_1336437_1 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 317.0
LYD1_k127_1342405_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 343.0
LYD1_k127_1342405_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008954 282.0
LYD1_k127_1342405_2 COG COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000004367 243.0
LYD1_k127_1342405_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000002547 163.0
LYD1_k127_1342405_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.0000000000000000000000001814 108.0
LYD1_k127_1342405_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000006342 57.0
LYD1_k127_1343521_0 Domain of unknown function (DUF5060) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 314.0
LYD1_k127_1346338_0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 606.0
LYD1_k127_1346338_1 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 314.0
LYD1_k127_1346338_2 plastoquinone (Complex I) K12141 - - 0.000000000000000000000000000000000000000000000000000004915 196.0
LYD1_k127_1346338_3 - - - - 0.000003172 49.0
LYD1_k127_1354900_0 COG3119 Arylsulfatase A and related enzymes - - - 2.93e-203 649.0
LYD1_k127_1354900_1 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009074 393.0
LYD1_k127_1354900_2 arylsulfatase activity K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 347.0
LYD1_k127_1354900_3 PFAM Peptidase M16 - - - 0.0000000000000000000000000000000000000247 147.0
LYD1_k127_1354900_4 PFAM Peptidase M16 - - - 0.0000000006215 63.0
LYD1_k127_1369941_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 524.0
LYD1_k127_1369941_1 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004323 493.0
LYD1_k127_1369941_2 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 293.0
LYD1_k127_1369941_3 GTP-binding protein HSR1-related K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004557 278.0
LYD1_k127_1404455_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 512.0
LYD1_k127_1404455_1 RHS Repeat - - - 0.00000000000000000000000002958 119.0
LYD1_k127_1414870_0 helicase K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 607.0
LYD1_k127_1414870_1 Sulfatase-modifying factor enzyme 1 - - - 0.0007204 44.0
LYD1_k127_1416718_0 ATP-dependent helicase nuclease subunit A K16898 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 532.0
LYD1_k127_1416718_1 ATP-dependent helicase deoxyribonuclease subunit B K16899 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004519,GO:0004527,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.6.4.12 0.00000001996 57.0
LYD1_k127_1429380_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein K00239 - 1.3.5.1,1.3.5.4 1.078e-254 799.0
LYD1_k127_1429380_1 aconitate hydratase K01681 - 4.2.1.3 4.02e-251 789.0
LYD1_k127_1429380_2 fumarate hydratase activity K01679 GO:0003674,GO:0003824,GO:0004333,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 4.2.1.2 9.207e-204 643.0
LYD1_k127_1429380_3 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 495.0
LYD1_k127_1429380_4 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 456.0
LYD1_k127_1429380_5 succinate-CoA ligase activity K01903,K14067 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009361,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0032991,GO:0042709,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045333,GO:0055114,GO:0071704,GO:0072350,GO:1902494 6.2.1.5,6.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005836 348.0
LYD1_k127_1429380_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795 348.0
LYD1_k127_1429380_7 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 GO:0000104,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0022904,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 309.0
LYD1_k127_1429380_8 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000006037 244.0
LYD1_k127_145566_0 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 342.0
LYD1_k127_145566_1 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003273 256.0
LYD1_k127_145566_2 Hydrogenase accessory protein HypB K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000008808 240.0
LYD1_k127_145566_3 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 GO:0003674,GO:0005488,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0010467,GO:0016151,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0051604,GO:0071704,GO:1901564 - 0.00000000000002934 81.0
LYD1_k127_145566_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0008195 42.0
LYD1_k127_1458697_0 Glycosyl hydrolases family 15 K01178 - 3.2.1.3 6.694e-240 758.0
LYD1_k127_1458697_1 Domain of unknown function (DUF4091) - - - 0.0000000000000000000000000000000000000000000000000000000000000003331 243.0
LYD1_k127_1462862_0 DEAD DEAH box helicase K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004646 605.0
LYD1_k127_1462862_1 N-6 DNA Methylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 306.0
LYD1_k127_1462862_2 B12 binding domain - - - 0.000000000000000000000001551 112.0
LYD1_k127_1462862_3 GHKL domain - - - 0.00000000000000000000002943 104.0
LYD1_k127_1462862_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000001296 87.0
LYD1_k127_1476244_0 Proton-conducting membrane transporter K12137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 436.0
LYD1_k127_1476244_1 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006816 342.0
LYD1_k127_1476244_2 Proton-conducting membrane transporter K12141 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 326.0
LYD1_k127_1476244_3 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000000000000000002784 192.0
LYD1_k127_1477064_0 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 392.0
LYD1_k127_1477064_1 Methane oxygenase PmoA - - - 0.00000000000000000000000000000000000000000000000002569 186.0
LYD1_k127_1477064_2 - - - - 0.00000000000000000000000000000000000407 149.0
LYD1_k127_1498677_0 PFAM Metal-dependent phosphohydrolase, HD K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 325.0
LYD1_k127_1498677_1 Phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001548 242.0
LYD1_k127_1498677_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000407 81.0
LYD1_k127_1498677_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000007203 71.0
LYD1_k127_1505432_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 375.0
LYD1_k127_1505432_1 Amb_all K01728 - 4.2.2.2 0.0000000009211 70.0
LYD1_k127_1521063_0 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 282.0
LYD1_k127_152412_0 PFAM Neutral alkaline nonlysosomal ceramidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 501.0
LYD1_k127_152412_1 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 317.0
LYD1_k127_152412_2 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000002943 104.0
LYD1_k127_152412_3 YXWGXW repeat (2 copies) - - - 0.000000000004438 71.0
LYD1_k127_152412_4 - - - - 0.00002177 48.0
LYD1_k127_1526144_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 595.0
LYD1_k127_1526144_1 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 539.0
LYD1_k127_1526144_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001821 253.0
LYD1_k127_1526144_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000001091 194.0
LYD1_k127_1526144_4 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000006093 186.0
LYD1_k127_1526144_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000531 155.0
LYD1_k127_1526144_6 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864,K02935 GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0016020,GO:0017148,GO:0019222,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.000000000000000000009419 98.0
LYD1_k127_1526144_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000000001945 70.0
LYD1_k127_1526144_8 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000007942 59.0
LYD1_k127_1526144_9 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00001457 51.0
LYD1_k127_1538557_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 475.0
LYD1_k127_1538557_1 FAD dependent oxidoreductase K15736 - - 0.00000000000000000000000000000000000000000000000000003078 190.0
LYD1_k127_1538557_2 metal-binding protein - - - 0.000000000000000000000000000000004768 133.0
LYD1_k127_1562311_0 PHP-associated K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000002661 213.0
LYD1_k127_1562311_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07642,K18143 - 2.7.13.3 0.0000000000000000007738 100.0
LYD1_k127_1562311_2 Belongs to the glycerate kinase type-1 family K00865 - 2.7.1.165 0.00000005197 55.0
LYD1_k127_1570937_0 stress-induced mitochondrial fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002602 269.0
LYD1_k127_1570937_1 ABC-type transport system involved in multi-copper enzyme maturation permease component - - - 0.000000000000000000000000000000000000000000000000003358 193.0
LYD1_k127_1570937_2 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.00000000000000000000000000000000000000001062 160.0
LYD1_k127_1570937_3 beta subunit of N-acylethanolamine-hydrolyzing acid amidase - - - 0.0000000000000000000000000000000000008742 142.0
LYD1_k127_1570937_4 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000013 139.0
LYD1_k127_158913_0 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000006734 183.0
LYD1_k127_158913_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000007793 183.0
LYD1_k127_158913_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000003196 153.0
LYD1_k127_158913_3 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000001973 143.0
LYD1_k127_158913_4 Ribosomal protein S14p/S29e K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000001032 89.0
LYD1_k127_1597470_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K16363 - 3.5.1.108,4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008286 433.0
LYD1_k127_1597470_1 Oxidoreductase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 296.0
LYD1_k127_1597470_2 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.000000000000000000000000000000000000000000000000000000000001054 218.0
LYD1_k127_1597470_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000002052 218.0
LYD1_k127_1597470_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000005006 215.0
LYD1_k127_1597470_5 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000007244 201.0
LYD1_k127_1597470_6 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000000000000000000000000000000000222 139.0
LYD1_k127_1597470_7 - - - - 0.0000000000000000000001121 98.0
LYD1_k127_1597470_8 Protein of unknown function (DUF2442) - - - 0.00001145 50.0
LYD1_k127_164555_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 530.0
LYD1_k127_164555_1 Nitrous oxide-stimulated promoter - - - 0.000000000000000000000000000000001797 132.0
LYD1_k127_1661215_0 enzyme activase - - - 1.984e-194 627.0
LYD1_k127_1662761_0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) K16213 - 5.1.3.11 3.078e-195 616.0
LYD1_k127_1662761_1 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 324.0
LYD1_k127_1662761_2 PFAM Uncharacterised protein family UPF0027 K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000003872 233.0
LYD1_k127_1662761_3 pfkB family carbohydrate kinase - - - 0.0000000000000000007539 97.0
LYD1_k127_1672019_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 403.0
LYD1_k127_1672019_1 Belongs to the HAD-like hydrolase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005721 352.0
LYD1_k127_1672019_2 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000000000000006848 213.0
LYD1_k127_1672019_3 Natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000001072 196.0
LYD1_k127_1672019_4 Major Facilitator Superfamily K08223 - - 0.0000000000003505 70.0
LYD1_k127_1683731_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000323 184.0
LYD1_k127_1683731_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000142 179.0
LYD1_k127_1683731_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000004446 173.0
LYD1_k127_1683731_3 stress-induced protein - - - 0.00000000000000000000000000000000000006495 149.0
LYD1_k127_1683731_4 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000006124 79.0
LYD1_k127_169078_0 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000005351 199.0
LYD1_k127_169078_1 cellulose binding - - - 0.0000000000000000000000000002108 130.0
LYD1_k127_1712552_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002574 282.0
LYD1_k127_1712552_1 retrograde transport, endosome to Golgi - - - 0.0000000000000000002071 94.0
LYD1_k127_1712552_2 general secretion pathway protein K02456,K02650,K02679 - - 0.00000000001485 76.0
LYD1_k127_1738186_0 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 436.0
LYD1_k127_1738186_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003846 439.0
LYD1_k127_1738186_2 RNA recognition motif - - - 0.00000000000000002399 87.0
LYD1_k127_1738186_3 DNA-templated transcription, initiation - - - 0.0000003018 56.0
LYD1_k127_1744559_0 PFAM Glycosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 432.0
LYD1_k127_1744559_1 ABC-type multidrug transport system ATPase and permease K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 410.0
LYD1_k127_1744559_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009853 324.0
LYD1_k127_1744559_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 291.0
LYD1_k127_1744559_4 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02004,K05685 - - 0.00000000000000000000000000000000000000000000000000000000000000000001143 252.0
LYD1_k127_1744559_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.000000000000000000000000000000000000000000000000000003559 208.0
LYD1_k127_1744559_6 Stress responsive A/B Barrel Domain - - - 0.000000000000000000000000000000000000007303 149.0
LYD1_k127_1744559_7 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 - 3.1.2.6 0.0000000001587 63.0
LYD1_k127_1768573_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004 572.0
LYD1_k127_1768573_1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000561 414.0
LYD1_k127_1768573_2 Histidine kinase K02482,K07709,K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000008891 196.0
LYD1_k127_1768573_3 Protein of unknown function (DUF1559) - - - 0.00000002129 65.0
LYD1_k127_1776463_0 Amidohydrolase family - - - 2.107e-232 732.0
LYD1_k127_1776463_1 polygalacturonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 362.0
LYD1_k127_1776463_2 cell adhesion K02650 - - 0.000000000003169 76.0
LYD1_k127_1776463_3 carboxylic acid catabolic process - - - 0.0001484 47.0
LYD1_k127_1811012_0 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007344 427.0
LYD1_k127_1811012_1 PFAM WD-40 repeat protein K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004118 367.0
LYD1_k127_1811012_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002513 281.0
LYD1_k127_1811012_3 Methyltransferase K00567 - 2.1.1.63 0.0000000000000000000000000000000002291 138.0
LYD1_k127_1811012_4 Bacterial PH domain - - - 0.000000000000007873 84.0
LYD1_k127_1811012_5 stress-induced protein - - - 0.0000000003749 62.0
LYD1_k127_1811012_6 PFAM Preprotein translocase SecG subunit K03075 - - 0.0000000005572 66.0
LYD1_k127_1863090_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 526.0
LYD1_k127_1863090_1 von Willebrand factor, type A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007343 454.0
LYD1_k127_1863090_2 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000416 194.0
LYD1_k127_1863090_3 Aerotolerance regulator N-terminal - - - 0.0000000000000000001225 95.0
LYD1_k127_1869280_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007512 356.0
LYD1_k127_1869280_1 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008132 270.0
LYD1_k127_1869280_2 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000004455 153.0
LYD1_k127_1869280_3 LysE type translocator - - - 0.0000000000000000000000000000000001912 139.0
LYD1_k127_1869280_5 Protein of unknown function - - - 0.00000000000000002319 96.0
LYD1_k127_1869589_0 PFAM GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001344 253.0
LYD1_k127_1869589_1 Glycosyl hydrolases family 28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000218 256.0
LYD1_k127_1869589_2 general secretion pathway protein K02456,K02679 - - 0.000000000005194 74.0
LYD1_k127_1876316_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003832 330.0
LYD1_k127_1876316_1 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.000000000000000000000000000000000000000000000000000000000000000009965 229.0
LYD1_k127_1876316_2 COG1077 Actin-like ATPase involved in cell morphogenesis K03569 - - 0.00000000000000000000001147 102.0
LYD1_k127_1876316_3 Involved in formation and maintenance of cell shape K03570 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0043621,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944,GO:0071963 - 0.0004353 51.0
LYD1_k127_1895767_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 356.0
LYD1_k127_1895767_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000005847 186.0
LYD1_k127_189782_0 He_PIG associated, NEW1 domain of bacterial glycohydrolase K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003846 287.0
LYD1_k127_189782_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000004504 233.0
LYD1_k127_1901482_0 amino acid K03294 - - 1.553e-221 699.0
LYD1_k127_1901482_1 TIM-barrel fold K07045 - - 0.0000000000000000000000000000000329 130.0
LYD1_k127_1901482_2 Sodium:neurotransmitter symporter family - - - 0.0000000000000001211 81.0
LYD1_k127_1921364_0 Prokaryotic N-terminal methylation motif K02456,K02650 - - 0.00000000000001104 84.0
LYD1_k127_1921364_1 general secretion pathway protein K02456,K02679 - - 0.000000000000668 79.0
LYD1_k127_1947670_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 391.0
LYD1_k127_1947670_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 357.0
LYD1_k127_1947670_2 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000007888 187.0
LYD1_k127_1947670_3 methyltransferase - - - 0.00000000009848 72.0
LYD1_k127_1947670_4 Tetratricopeptide repeat - - - 0.0000005297 56.0
LYD1_k127_1961919_0 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K00162,K11381 - 1.2.4.1,1.2.4.4 1.164e-303 942.0
LYD1_k127_1961919_1 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 332.0
LYD1_k127_1961919_2 Trypsin-like serine protease - - - 0.00000000000000000003595 104.0
LYD1_k127_1961919_3 DNA-templated transcription, initiation - - - 0.000000000000000001577 94.0
LYD1_k127_1961919_4 general secretion pathway protein - - - 0.000134 44.0
LYD1_k127_1984134_0 COG COG3119 Arylsulfatase A and related enzymes K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 615.0
LYD1_k127_1984134_1 Oxidoreductase family, NAD-binding Rossmann fold K00118 - 1.1.99.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 294.0
LYD1_k127_1984134_2 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000005937 222.0
LYD1_k127_198601_0 TPM domain - - - 0.00000000000000000000000000000000000000000000000000000000000002599 225.0
LYD1_k127_198601_1 nucleotidyltransferase activity - - - 0.000000000000000000000000000000003067 138.0
LYD1_k127_1989969_0 PFAM SNF2-related protein - - - 1.777e-261 829.0
LYD1_k127_1989969_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 542.0
LYD1_k127_1989969_2 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 523.0
LYD1_k127_1989969_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 447.0
LYD1_k127_1989969_4 Protein conserved in bacteria K09859 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002099 262.0
LYD1_k127_1989969_5 Collagen-binding surface adhesin SpaP (antigen I II family) K07337 - - 0.000000000000000000000000000000000000000000000000000000000004215 214.0
LYD1_k127_1989969_6 DEAD DEAH box helicase K03654 - 3.6.4.12 0.00000000000001423 75.0
LYD1_k127_1998141_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 480.0
LYD1_k127_1998141_1 secondary active sulfate transmembrane transporter activity K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 453.0
LYD1_k127_1998141_2 MOSC domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000322 191.0
LYD1_k127_1998141_3 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000001955 189.0
LYD1_k127_1998141_4 Molybdenum cofactor biosynthesis protein B - - - 0.00000000000000000000000000000000000000000000001115 175.0
LYD1_k127_1998141_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000005606 88.0
LYD1_k127_201736_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000002506 244.0
LYD1_k127_201736_1 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000933 203.0
LYD1_k127_201736_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0000000000000000000000000000000000000000000000009821 183.0
LYD1_k127_201736_3 Periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000000006034 176.0
LYD1_k127_201736_4 - - - - 0.000000000000000000000000000000006827 143.0
LYD1_k127_201736_5 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000001117 116.0
LYD1_k127_201736_6 Polysaccharide biosynthesis protein - - - 0.00000000000004158 80.0
LYD1_k127_201736_7 DNA gyrase inhibitor YacG K09862 - - 0.000000008018 62.0
LYD1_k127_206543_0 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.0000000000000005161 83.0
LYD1_k127_2068902_0 histidine-tRNA ligase activity K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 331.0
LYD1_k127_2068902_1 enterobactin catabolic process K00700,K07214,K16147 - 2.4.1.18,2.4.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008409 326.0
LYD1_k127_2068902_2 PFAM Uncharacterised protein family (UPF0153) - - - 0.0000000000000000000000000008058 117.0
LYD1_k127_2068902_3 - - - - 0.00000000001934 68.0
LYD1_k127_2068902_4 general secretion pathway protein K02456,K02679 - - 0.0004327 49.0
LYD1_k127_2077473_0 E-Z type HEAT repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009242 397.0
LYD1_k127_2077473_1 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000001867 181.0
LYD1_k127_2078499_0 RNA pseudouridylate synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002156 274.0
LYD1_k127_2078499_1 PAC2 family K07159 - - 0.000000000000000000000001739 114.0
LYD1_k127_2098921_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 309.0
LYD1_k127_2098921_2 tRNA methylthiotransferase YqeV K18707 - 2.8.4.5 0.000000000505 61.0
LYD1_k127_210134_0 PFAM glycoside hydrolase, family 29 K01206 - 3.2.1.51 7.776e-222 695.0
LYD1_k127_210134_1 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 548.0
LYD1_k127_210134_2 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 501.0
LYD1_k127_210134_3 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005158 400.0
LYD1_k127_210134_4 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 389.0
LYD1_k127_210134_5 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 379.0
LYD1_k127_210134_6 COG3119 Arylsulfatase A and related enzymes K01138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 306.0
LYD1_k127_210134_7 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.0000000000000000000000000002368 117.0
LYD1_k127_210134_8 Methane oxygenase PmoA - - - 0.0000000000000000009793 89.0
LYD1_k127_210134_9 Putative addiction module component - - - 0.00000000000006282 75.0
LYD1_k127_2123710_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 7.932e-239 746.0
LYD1_k127_2123710_1 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000156 286.0
LYD1_k127_2127122_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 438.0
LYD1_k127_2127122_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000004615 207.0
LYD1_k127_2127122_2 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000000000000000000000000000009959 222.0
LYD1_k127_2127122_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000009043 86.0
LYD1_k127_2129190_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 381.0
LYD1_k127_2129190_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000136 237.0
LYD1_k127_2129190_2 adenylate kinase activity K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000789 228.0
LYD1_k127_2129190_3 50S ribosomal protein L31 K02909 - - 0.00000000000000000000000006344 109.0
LYD1_k127_2141222_0 Protein involved in outer membrane biogenesis - - - 0.000000002103 70.0
LYD1_k127_2143803_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000006782 258.0
LYD1_k127_2143803_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000003601 239.0
LYD1_k127_2143803_2 Disulphide bond corrector protein DsbC - - - 0.0000000000000000000000000000000000000000000000000002813 205.0
LYD1_k127_2159729_0 AcrB/AcrD/AcrF family K07787 - - 2.437e-282 886.0
LYD1_k127_2159729_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0000000000000000000000000000000000000000000000000001528 187.0
LYD1_k127_2164851_0 COG NOG08360 non supervised orthologous group - - - 0.00000000000000000003109 95.0
LYD1_k127_2164851_1 Outer membrane lipoprotein K05807 - - 0.0000004601 61.0
LYD1_k127_2172914_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004213 286.0
LYD1_k127_2172914_1 oligosaccharyl transferase activity - - - 0.000003193 59.0
LYD1_k127_2175429_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 7.635e-224 713.0
LYD1_k127_2175429_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000002932 169.0
LYD1_k127_2182428_0 Peptide-N-glycosidase F, C terminal - - - 0.0000000000000000000000000002664 126.0
LYD1_k127_2182428_1 Prepilin-type N-terminal cleavage methylation domain - - - 0.0000000000000000002404 98.0
LYD1_k127_2182428_2 Required for transformation and DNA binding K02245,K02456 GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000004068 83.0
LYD1_k127_2205196_0 Pfam:N_methyl_2 - - - 0.0000005975 61.0
LYD1_k127_2205196_1 Type II secretion system (T2SS), protein G K02456 - - 0.0001086 51.0
LYD1_k127_2209721_0 PFAM Pyrrolo-quinoline quinone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 372.0
LYD1_k127_2209721_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000005176 132.0
LYD1_k127_2209721_2 Tellurite resistance protein TerB - - - 0.00000000006352 68.0
LYD1_k127_2214259_0 COG1674 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 533.0
LYD1_k127_2214259_1 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009538 304.0
LYD1_k127_2214259_2 endopeptidase activity - - - 0.000000000000000000005177 106.0
LYD1_k127_2225816_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1368.0
LYD1_k127_2225816_1 Single-stranded DNA-binding protein K03111 - - 0.000000000000000000000000000000000000000283 153.0
LYD1_k127_2225816_2 Binds to the 23S rRNA K02939 - - 0.0000000000000000000003295 102.0
LYD1_k127_2225816_3 Protein of unknown function (DUF2892) - - - 0.00000000000000000001614 93.0
LYD1_k127_2225816_4 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000001642 98.0
LYD1_k127_2225816_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000007208 85.0
LYD1_k127_2225816_6 rRNA binding K02963 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000003906 80.0
LYD1_k127_2225816_7 secretion protein HlyD K07799 - - 0.0000000000001772 72.0
LYD1_k127_2230131_0 Argininosuccinate synthase K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 491.0
LYD1_k127_2230131_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 347.0
LYD1_k127_2230131_2 Bacterial Peptidase A24 N-terminal domain K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000007725 240.0
LYD1_k127_2230131_3 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000006473 180.0
LYD1_k127_2230131_4 HEPN domain - - - 0.000000000000000000000000000038 122.0
LYD1_k127_2230131_5 nucleotidyltransferase activity K07075 - - 0.00000000000000000000000000005311 118.0
LYD1_k127_2230131_6 OmpA family - - - 0.000000000000000000000000185 114.0
LYD1_k127_2230131_8 nucleotidyltransferase activity K07076 - - 0.00000003585 59.0
LYD1_k127_2250669_0 alpha-L-rhamnosidase - - - 1.612e-267 858.0
LYD1_k127_2250669_1 mannose metabolic process - - - 2.343e-226 740.0
LYD1_k127_2250669_2 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 595.0
LYD1_k127_2250669_3 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 475.0
LYD1_k127_2250669_4 PFAM RhaT l-rhamnose-proton symport 2 K02856 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004752 430.0
LYD1_k127_2250669_5 Alpha-1,2-mannosidase - - - 0.00000000000000000000000002166 128.0
LYD1_k127_2258876_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 357.0
LYD1_k127_2258876_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000003375 237.0
LYD1_k127_2258876_2 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000005591 129.0
LYD1_k127_2258876_3 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000001388 107.0
LYD1_k127_2258876_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000001956 87.0
LYD1_k127_2258876_5 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000005194 74.0
LYD1_k127_2259639_0 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001279 274.0
LYD1_k127_2259639_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000004094 273.0
LYD1_k127_2259639_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 - 3.2.1.78 0.0000007104 57.0
LYD1_k127_2263275_0 dehydrogenases and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003764 278.0
LYD1_k127_2291573_0 Surface proteins containing Ig-like domains-like - - - 0.000000000000000000000000000000000000000000000000000005811 213.0
LYD1_k127_2291573_1 - - - - 0.00000000000000001202 95.0
LYD1_k127_2292974_1 Protein of unknown function (DUF2400) K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457 359.0
LYD1_k127_2292974_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006713 283.0
LYD1_k127_2292974_3 PFAM Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000004301 170.0
LYD1_k127_2292974_4 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000279 102.0
LYD1_k127_2322233_0 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000529 238.0
LYD1_k127_2322233_1 CobQ CobB MinD ParA nucleotide binding domain K08252,K13661,K16554,K16692 - 2.7.10.1 0.00000000000000000000000000000000000000000000000000000000573 218.0
LYD1_k127_2322233_2 polysaccharide biosynthetic process - - - 0.00000000000000000002968 106.0
LYD1_k127_2322233_3 PFAM Transcription termination factor nusG K05785 - - 0.0000000000000001861 88.0
LYD1_k127_2323321_0 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 467.0
LYD1_k127_2323321_1 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000007457 129.0
LYD1_k127_2323321_2 - - - - 0.00000003855 57.0
LYD1_k127_2328546_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 555.0
LYD1_k127_2328546_1 L-fucose isomerase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 458.0
LYD1_k127_2328546_2 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000001766 216.0
LYD1_k127_2328546_3 - - - - 0.0000006287 61.0
LYD1_k127_2359132_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 461.0
LYD1_k127_2359132_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000002449 137.0
LYD1_k127_2374287_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 585.0
LYD1_k127_2374287_1 Heparinase II/III-like protein K19051 GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008201,GO:0009056,GO:0009057,GO:0009987,GO:0016829,GO:0016835,GO:0016837,GO:0030202,GO:0030203,GO:0030211,GO:0042597,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044464,GO:0047488,GO:0071704,GO:0097367,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901681,GO:1903510 4.2.2.7,4.2.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 407.0
LYD1_k127_2374287_3 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000004033 121.0
LYD1_k127_2374287_4 HEPN domain - - - 0.0000000000000000000005336 100.0
LYD1_k127_2374287_5 nucleotidyltransferase activity K07076 - - 0.0000000000001968 76.0
LYD1_k127_2374287_6 - - - - 0.00000000003497 67.0
LYD1_k127_238240_0 Hypothetical glycosyl hydrolase 6 - - - 0.000000000000000000000000000000000000000000000000001541 188.0
LYD1_k127_238240_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000002852 178.0
LYD1_k127_238240_2 Phage integrase family - - - 0.00000000000000000000000000002121 130.0
LYD1_k127_2396858_0 PAS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008808 460.0
LYD1_k127_2396858_1 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000001083 191.0
LYD1_k127_2396858_2 KaiB K08481 - - 0.000000000000000000000000000000000000007748 145.0
LYD1_k127_2396858_3 KaiB K08481 - - 0.000000000000000000000000000001627 126.0
LYD1_k127_2427975_0 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000003257 207.0
LYD1_k127_2427975_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000008331 182.0
LYD1_k127_2427975_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000339 172.0
LYD1_k127_2427975_3 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000001822 136.0
LYD1_k127_2427975_4 L-fucose isomerase and related - - - 0.00000000000000000001273 106.0
LYD1_k127_2451403_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 2.321e-264 846.0
LYD1_k127_2463025_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01706 - 4.2.1.40 3.362e-200 631.0
LYD1_k127_2463025_1 carboxylic acid catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 519.0
LYD1_k127_2463025_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 502.0
LYD1_k127_2463025_3 PFAM Gluconate transporter K03299 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 499.0
LYD1_k127_2463025_4 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 438.0
LYD1_k127_2463025_5 COGs COG3836 2 4-dihydroxyhept-2-ene-1 7-dioic acid aldolase K02510,K12660 - 4.1.2.52,4.1.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003634 343.0
LYD1_k127_2463025_6 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006894 253.0
LYD1_k127_2463025_7 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000001617 218.0
LYD1_k127_2463025_8 Binds directly to 16S ribosomal RNA K02968 - - 0.000008247 51.0
LYD1_k127_2485271_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.4.1.2,1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 546.0
LYD1_k127_2485271_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 355.0
LYD1_k127_2498955_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 335.0
LYD1_k127_2498955_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000001004 186.0
LYD1_k127_2510172_0 chorismate binding enzyme K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 343.0
LYD1_k127_2510172_1 NIF3 (NGG1p interacting factor 3) K22391 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 319.0
LYD1_k127_2510172_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000007965 182.0
LYD1_k127_2518625_0 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003911 348.0
LYD1_k127_2518625_1 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000000001115 217.0
LYD1_k127_2518625_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000005581 110.0
LYD1_k127_2518625_3 - - - - 0.0000003469 58.0
LYD1_k127_2518625_4 SPFH domain-Band 7 family - - - 0.000002361 61.0
LYD1_k127_2518625_5 - - - - 0.00001239 59.0
LYD1_k127_2532591_0 - - - - 0.0000000000007114 70.0
LYD1_k127_253379_0 - - - - 0.000000000000000008696 98.0
LYD1_k127_253379_1 Transcriptional regulator PadR-like family - - - 0.0000000000002651 72.0
LYD1_k127_2549983_0 TIGR02453 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002185 243.0
LYD1_k127_2549983_1 isochorismatase - - - 0.00000000000000000000000000000000000000000000000000000002218 205.0
LYD1_k127_2549983_2 Regulatory protein, FmdB family - - - 0.00000000000000000000000001103 112.0
LYD1_k127_2549983_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.0000000000002911 72.0
LYD1_k127_2556585_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 444.0
LYD1_k127_2556585_1 COG2931 RTX toxins and related Ca2 -binding - - - 0.000000000000000000000000000000000002881 153.0
LYD1_k127_2562935_0 candidate rhamnogalacturonan lyase, polysaccharide lyase family 11 protein K01238 K18197 - 4.2.2.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 390.0
LYD1_k127_2562935_1 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000006981 134.0
LYD1_k127_2562935_2 Pfam:N_methyl_2 K02456 - - 0.00000000000000000001773 98.0
LYD1_k127_2562935_3 Pfam:N_methyl_2 K02456 - - 0.00000000000000000003067 97.0
LYD1_k127_2562935_4 Pfam:N_methyl_2 K02456 - - 0.000000006053 64.0
LYD1_k127_2562935_5 type IV pilus modification protein PilV K10927 - - 0.000001946 57.0
LYD1_k127_25854_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005825 501.0
LYD1_k127_25854_1 Protein of unknown function (DUF2961) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 456.0
LYD1_k127_25854_2 COG0147 Anthranilate para-aminobenzoate synthases component I K01657,K13503 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004232 360.0
LYD1_k127_25854_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 293.0
LYD1_k127_25854_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000003571 261.0
LYD1_k127_25854_5 Anthranilate synthase K01658 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000002849 208.0
LYD1_k127_25854_6 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000001701 198.0
LYD1_k127_25854_7 Redoxin - - - 0.000000000000000000000000000000000000000000002033 183.0
LYD1_k127_25854_8 Cytochrome c - - - 0.00000000000000000000000000000002993 147.0
LYD1_k127_25854_9 intracellular protein transport - - - 0.00000000000000000001844 94.0
LYD1_k127_2590148_0 Belongs to the SEDS family K05837 - - 0.000000000000000000000000000000000000000000000000000000000001747 225.0
LYD1_k127_2590148_1 Domain of unknown function (DUF4258) - - - 0.00000000000000000000000000000000000000005041 153.0
LYD1_k127_2590148_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000002103 112.0
LYD1_k127_2590148_3 - - - - 0.00000000000000000001284 95.0
LYD1_k127_2598077_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005301 388.0
LYD1_k127_2598077_1 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001812 271.0
LYD1_k127_2598077_2 PDZ domain (Also known as DHR K11749 - - 0.00000000000000000003365 95.0
LYD1_k127_2602814_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K01652 - 2.2.1.6 1.402e-217 690.0
LYD1_k127_2602814_1 Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000001468 196.0
LYD1_k127_2602814_2 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 0.0000000000000000000000000004537 115.0
LYD1_k127_2608790_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1080.0
LYD1_k127_2608790_1 Belongs to the KdsA family K01627 - 2.5.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 301.0
LYD1_k127_2608790_2 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000001556 226.0
LYD1_k127_2608790_3 PFAM Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000007436 214.0
LYD1_k127_2608790_4 Diacylglycerol kinase - - - 0.00000000000000000000000000000000008276 145.0
LYD1_k127_2608790_5 Cupin domain - - - 0.00000000000000000000000000007169 115.0
LYD1_k127_2608790_6 adenylyl cyclase CyaB K05873 - 4.6.1.1 0.00000000007909 69.0
LYD1_k127_2614755_0 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000007577 164.0
LYD1_k127_2624970_0 PFAM PKD domain containing protein - - - 0.000000000000000000000000000000000000000000009888 179.0
LYD1_k127_2624970_1 Bacterial transferase hexapeptide repeat protein - - - 0.000000000000001079 84.0
LYD1_k127_2624970_2 Pfam Glycosyl transferases group 1 - - - 0.00000000003123 66.0
LYD1_k127_2633786_0 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 464.0
LYD1_k127_2633786_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000003126 53.0
LYD1_k127_2644767_0 Beta-lactamase superfamily domain - - - 0.00000000000000006967 91.0
LYD1_k127_2644767_1 cell adhesion involved in biofilm formation K13735 - - 0.0000000000000008017 93.0
LYD1_k127_2646269_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000000000000000000000000011 163.0
LYD1_k127_2665751_0 YdjC-like protein K03478 - 3.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 336.0
LYD1_k127_2665751_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000003545 153.0
LYD1_k127_2672630_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 576.0
LYD1_k127_2672630_1 Organic Anion Transporter Polypeptide (OATP) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 482.0
LYD1_k127_2672630_2 Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 356.0
LYD1_k127_2672630_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00003726 47.0
LYD1_k127_2686241_0 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 293.0
LYD1_k127_2686241_1 Serine threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A K15502 GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0070013,GO:0071840,GO:0090114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001678 281.0
LYD1_k127_2686241_2 radical SAM domain protein K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000002065 234.0
LYD1_k127_2686241_3 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000006018 182.0
LYD1_k127_2690106_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 592.0
LYD1_k127_2690106_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 443.0
LYD1_k127_2690106_2 FHA domain - - - 0.000000001686 65.0
LYD1_k127_2690106_3 CAAX protease self-immunity K07052 - - 0.00000001133 66.0
LYD1_k127_2690106_4 alpha-glucosidase K01187,K21574 - 3.2.1.20,3.2.1.3 0.0005415 48.0
LYD1_k127_2690289_0 TIGRFAM Diguanylate cyclase - - - 0.00000000000000000000000000000000000000001146 164.0
LYD1_k127_2690289_1 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.00000000000000000000000009157 119.0
LYD1_k127_2701691_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000005784 201.0
LYD1_k127_2701691_1 Transporter, Drug Metabolite Exporter family of Pasteurellaceae UniRef RepID B8F432_HAEPS - - - 0.0000684 53.0
LYD1_k127_2701691_2 ECF sigma factor K03088 - - 0.0004327 49.0
LYD1_k127_2720450_0 Heavy metal translocating P-type atpase K01534,K17686 - 3.6.3.3,3.6.3.5,3.6.3.54 0.0000000000000000000000000000000000000000000000000000000002358 211.0
LYD1_k127_2720450_1 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000008444 112.0
LYD1_k127_2725998_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000000000000000000000000000000000001795 221.0
LYD1_k127_2725998_1 Glycosyl transferases group 1 - - - 0.0009063 52.0
LYD1_k127_2729779_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007108 501.0
LYD1_k127_2729779_1 Xylose isomerase-like TIM barrel K01816 - 5.3.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 364.0
LYD1_k127_2729779_2 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.000000000000000000000000000000000004461 141.0
LYD1_k127_2736445_0 Pfam:DUF303 K05970 - 3.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 365.0
LYD1_k127_2736445_1 converts alpha-aldose to the beta-anomer - - - 0.0000000000000000000001128 101.0
LYD1_k127_2741263_0 Converts the aldose L-fucose into the corresponding ketose L-fuculose K01818 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006004,GO:0008150,GO:0008152,GO:0008736,GO:0008790,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019317,GO:0019318,GO:0019320,GO:0019321,GO:0019323,GO:0019566,GO:0019568,GO:0019571,GO:0042354,GO:0042355,GO:0042802,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046365,GO:0046372,GO:0071704,GO:1901575 5.3.1.25,5.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 519.0
LYD1_k127_2741263_1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00162,K00627 - 1.2.4.1,2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000003019 234.0
LYD1_k127_2748283_0 PFAM Aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008715 543.0
LYD1_k127_2748283_1 - - - - 0.0000004418 59.0
LYD1_k127_2748283_2 Glucuronate isomerase K01812 - 5.3.1.12 0.000006783 49.0
LYD1_k127_2753404_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1199.0
LYD1_k127_2753404_1 - - - - 0.000000000000000000000000002044 116.0
LYD1_k127_2753404_2 DNA-templated transcription, initiation K03088 - - 0.00000000000001774 80.0
LYD1_k127_2753404_3 - - - - 0.0000000000204 67.0
LYD1_k127_2757087_0 PFAM deoxyribose-phosphate aldolase phospho-2-dehydro-3-deoxyheptonate aldolase K08321 - 2.3.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 394.0
LYD1_k127_2757087_1 COG1457 Purine-cytosine permease and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 331.0
LYD1_k127_2790479_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009407 412.0
LYD1_k127_2790479_1 Predicted membrane protein (DUF2339) - - - 0.00000000000000000000000000000000000002002 163.0
LYD1_k127_280583_0 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000004317 212.0
LYD1_k127_280583_1 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000003831 190.0
LYD1_k127_280583_2 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000001653 153.0
LYD1_k127_280583_3 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000001857 113.0
LYD1_k127_280583_4 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000004339 92.0
LYD1_k127_280583_5 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000878 56.0
LYD1_k127_2813035_0 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 402.0
LYD1_k127_2813035_1 DGC domain - - - 0.00000000000000000000000000000000000001711 148.0
LYD1_k127_2813035_2 Thioredoxin domain - - - 0.00000000000000000000000003649 109.0
LYD1_k127_2823617_0 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000001183 157.0
LYD1_k127_2823617_1 - - - - 0.000000000000000000002239 97.0
LYD1_k127_2823617_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000005546 87.0
LYD1_k127_2823617_4 Protein of unknown function (DUF2752) - - - 0.000000000000009557 81.0
LYD1_k127_2823617_5 - - - - 0.000000000001418 80.0
LYD1_k127_2823617_6 domain, Protein - - - 0.00001512 55.0
LYD1_k127_284211_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 456.0
LYD1_k127_284211_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 390.0
LYD1_k127_284211_2 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 366.0
LYD1_k127_284211_3 Succinoglycan biosynthesis protein exoa - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004363 288.0
LYD1_k127_284211_4 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000005619 205.0
LYD1_k127_284211_5 Bacterial sugar transferase K13012,K19428 - - 0.000000000000000000000000000000000000000000000000009868 187.0
LYD1_k127_284211_6 Nitroreductase family - - - 0.0000000000000000000000000000000000000003846 165.0
LYD1_k127_284211_7 DJ-1/PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000003698 141.0
LYD1_k127_284211_8 VanZ like family - - - 0.00000009268 62.0
LYD1_k127_2849397_0 amino acid activation for nonribosomal peptide biosynthetic process K05889 - 1.1.2.6 2.388e-283 922.0
LYD1_k127_2849397_1 Competence-damaged protein K03742,K03743 - 3.5.1.42 0.00000000003361 72.0
LYD1_k127_2870750_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 1.259e-262 831.0
LYD1_k127_2870750_1 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006549 298.0
LYD1_k127_2870750_2 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000005449 93.0
LYD1_k127_2878337_0 C-terminal region of band_7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 451.0
LYD1_k127_2878337_1 - K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007132 414.0
LYD1_k127_2878337_2 cellular response to DNA damage stimulus K07340 - - 0.000002515 51.0
LYD1_k127_2884608_0 NPCBM-associated, NEW3 domain of alpha-galactosidase - - - 0.00000000008856 70.0
LYD1_k127_2884608_1 general secretion pathway protein K02456 - - 0.000000001609 68.0
LYD1_k127_2884861_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 376.0
LYD1_k127_2884861_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006735 237.0
LYD1_k127_2884861_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.00000000000000000000000000000000000000000000000000000000000008566 221.0
LYD1_k127_2889069_0 NUDIX domain K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 370.0
LYD1_k127_2889069_1 Domain of unknown function (DUF4091) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006753 289.0
LYD1_k127_2889069_2 TIGRFAM prepilin-type N-terminal cleavage methylation domain - - - 0.0000000003334 70.0
LYD1_k127_2889069_3 Mandelate racemase muconate lactonizing enzyme - - - 0.00001653 53.0
LYD1_k127_2933653_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 434.0
LYD1_k127_2933653_1 - - - - 0.00000000000000000000000000004739 120.0
LYD1_k127_2935481_0 Transketolase, pyrimidine binding domain K00162,K21417 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005352 346.0
LYD1_k127_2935481_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 304.0
LYD1_k127_2935481_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000003522 83.0
LYD1_k127_2943612_0 TIGRFAM phosphate ABC transporter, inner membrane subunit PstA K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 341.0
LYD1_k127_2943612_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 301.0
LYD1_k127_2943612_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005012 294.0
LYD1_k127_2943612_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000001507 228.0
LYD1_k127_2943612_4 phosphate binding protein K02040 - - 0.000000000000000000000000000000000000002137 152.0
LYD1_k127_2945114_0 Evidence 4 Homologs of previously reported genes of K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000002954 246.0
LYD1_k127_2945114_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) - - - 0.000000000000000000000000000000000000000000001214 170.0
LYD1_k127_2945114_2 Peptide-N-glycosidase F, C terminal - - - 0.000000000000002806 90.0
LYD1_k127_2948031_0 Family of unknown function (DUF5309) - - - 0.0000000000000000000000000000000000000000000000000002884 199.0
LYD1_k127_2948031_1 Phage portal protein, SPP1 Gp6-like - - - 0.0000003192 63.0
LYD1_k127_2956753_0 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002136 267.0
LYD1_k127_2956753_1 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009017 252.0
LYD1_k127_2956753_2 Acetyl xylan esterase (AXE1) - - - 0.0000000000000000000000000000000000001126 148.0
LYD1_k127_2998019_0 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 360.0
LYD1_k127_2998019_1 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007851 332.0
LYD1_k127_2998019_2 60 kDa outer membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 317.0
LYD1_k127_2998019_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000131 218.0
LYD1_k127_2998019_4 Protein of unknown function (DUF981) K08980 - - 0.000000000000000000000000000000000000000000000000000000002069 204.0
LYD1_k127_2998019_5 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.0000000000000000000000000000000000003162 145.0
LYD1_k127_3028224_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000002894 166.0
LYD1_k127_3028224_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds - - - 0.000000000000000000000000000000000000001237 154.0
LYD1_k127_3028224_2 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000007168 48.0
LYD1_k127_3040296_0 Carbon starvation protein K06200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 485.0
LYD1_k127_3040296_1 polysaccharide catabolic process K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009725 375.0
LYD1_k127_3040296_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 372.0
LYD1_k127_3043299_0 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 362.0
LYD1_k127_3043299_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000417 342.0
LYD1_k127_3043299_2 4Fe-4S double cluster binding domain - - - 0.0001859 46.0
LYD1_k127_3048698_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1439.0
LYD1_k127_3048698_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000002636 218.0
LYD1_k127_3054620_1 Glycogen debranching enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000943 263.0
LYD1_k127_3054620_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000009426 183.0
LYD1_k127_3054620_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000004644 96.0
LYD1_k127_3054620_4 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.0000000000000001292 88.0
LYD1_k127_3062385_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 4.539e-267 845.0
LYD1_k127_3062385_1 - - - - 0.000000000000000009566 87.0
LYD1_k127_306263_0 Belongs to the glycosyl hydrolase family 6 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 510.0
LYD1_k127_306263_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000002804 239.0
LYD1_k127_306263_2 Protein of unknown function DUF262 - - - 0.00000000000000000035 90.0
LYD1_k127_306263_3 ABC-2 family transporter protein K01992 - - 0.0000006388 61.0
LYD1_k127_3066855_0 phosphoglycerate mutase K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005132 432.0
LYD1_k127_3066855_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 396.0
LYD1_k127_3066855_2 aspartate kinase, monofunctional class K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 337.0
LYD1_k127_3067531_0 Pectate lyase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008714 311.0
LYD1_k127_3067531_1 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives K02343 - 2.7.7.7 0.000000000000000000017 98.0
LYD1_k127_3071425_0 Belongs to the N(4) N(6)-methyltransferase family K00571 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002063 282.0
LYD1_k127_3071425_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000001943 235.0
LYD1_k127_3071425_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000004457 149.0
LYD1_k127_3071425_3 Nucleotidyltransferase domain K07075 - - 0.0000000000000000000000000000009957 124.0
LYD1_k127_3071425_4 COGs COG2361 conserved - - - 0.0000000000000000000000000002946 116.0
LYD1_k127_3071425_5 PBS lyase HEAT domain protein repeat-containing protein - - - 0.00000003294 65.0
LYD1_k127_3071425_6 - - - - 0.0001007 52.0
LYD1_k127_3080772_0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 3.039e-320 994.0
LYD1_k127_3080772_1 Domain of unknown function (DUF4445) - - - 2.916e-198 636.0
LYD1_k127_3080772_2 CO dehydrogenase/acetyl-CoA synthase delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005973 463.0
LYD1_k127_3080772_3 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004441 278.0
LYD1_k127_3080772_4 AAA domain - - - 0.0000000000000000000000000000000000000000000000000001677 190.0
LYD1_k127_3091339_0 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 4.545e-241 757.0
LYD1_k127_3091339_1 Right handed beta helix region - - - 0.000000000000000001584 98.0
LYD1_k127_3096274_0 arylsulfatase activity K01051 - 3.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 491.0
LYD1_k127_3096274_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000001038 222.0
LYD1_k127_3096274_2 COG COG3119 Arylsulfatase A and related enzymes K01133 - 3.1.6.6 0.0000000000000000000000000000000000000000000006245 175.0
LYD1_k127_3096274_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K18828 - - 0.00000000000000000000000000000000000000001447 156.0
LYD1_k127_3096274_4 Antidote-toxin recognition MazE, bacterial antitoxin K18829 - - 0.000000000000000004603 88.0
LYD1_k127_3096274_5 Plasmid stabilization system - - - 0.000000000000000007688 88.0
LYD1_k127_3096274_6 Putative addiction module component - - - 0.00007403 48.0
LYD1_k127_3101565_0 Domain of unknown function (DUF4954) - - - 3.021e-248 784.0
LYD1_k127_3101565_1 Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion K02564 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 3.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 426.0
LYD1_k127_3101565_2 Uroporphyrinogen decarboxylase (URO-D) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 406.0
LYD1_k127_3101565_3 PFAM Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 337.0
LYD1_k127_3101565_4 SurA N-terminal domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000006023 197.0
LYD1_k127_3101565_5 N-acetylmuramoyl-L-alanine amidase - - - 0.0000000003866 68.0
LYD1_k127_3108471_0 D-mannonate dehydratase (UxuA) K01686 - 4.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 495.0
LYD1_k127_3108471_1 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 288.0
LYD1_k127_3108471_2 Proton-conducting membrane transporter K12137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000678 263.0
LYD1_k127_3108471_3 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000003538 87.0
LYD1_k127_3108471_4 PFAM Peptidase family M28 - - - 0.000000000000007026 86.0
LYD1_k127_3108471_5 PFAM lipopolysaccharide biosynthesis protein - - - 0.0002371 51.0
LYD1_k127_3108592_0 PFAM Flavodoxin nitric oxide synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 309.0
LYD1_k127_3108592_1 PFAM Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 295.0
LYD1_k127_3108592_2 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000009286 234.0
LYD1_k127_3108592_3 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000003126 213.0
LYD1_k127_3108592_4 Nickel-containing superoxide dismutase - - - 0.00000000000000000000000000000000000002247 150.0
LYD1_k127_3133101_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 497.0
LYD1_k127_3133101_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007961 335.0
LYD1_k127_3133101_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000004877 261.0
LYD1_k127_3133101_3 CDP-alcohol phosphatidyltransferase - - - 0.0000000000000000000004723 104.0
LYD1_k127_3133101_4 Pectate lyase K01179 - 3.2.1.4 0.00000000000000000003315 106.0
LYD1_k127_3137006_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0 1118.0
LYD1_k127_3137006_1 COG3119 Arylsulfatase A K01138 - - 2.528e-229 727.0
LYD1_k127_3137006_2 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01581 - 4.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 462.0
LYD1_k127_3137006_3 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 383.0
LYD1_k127_3137006_4 Mandelate racemase muconate lactonizing enzyme K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 363.0
LYD1_k127_3137006_5 Alginate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 360.0
LYD1_k127_3137006_6 DNA-templated transcription, initiation K03088 - - 0.000000000000000000004688 102.0
LYD1_k127_3137006_8 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000004814 60.0
LYD1_k127_3142144_0 CO dehydrogenase/acetyl-CoA synthase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 435.0
LYD1_k127_3142144_1 Methionine synthase K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000002261 178.0
LYD1_k127_3142144_2 PFAM CobQ CobB MinD ParA nucleotide binding domain K07321 - - 0.0008481 45.0
LYD1_k127_3144136_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009398 376.0
LYD1_k127_3144136_1 dehydrogenases and related proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003983 277.0
LYD1_k127_3148624_0 BadF BadG BcrA BcrD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002319 261.0
LYD1_k127_3148624_1 MatE - - - 0.00000000000000000000000172 110.0
LYD1_k127_3194205_0 rna polymerase alpha K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 312.0
LYD1_k127_3194205_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000003336 87.0
LYD1_k127_3194205_2 - - - - 0.000000000006355 79.0
LYD1_k127_3194205_3 Ig domain protein group 2 domain protein - - - 0.00000007593 66.0
LYD1_k127_3194205_4 protein with a C-terminal OMP (outer membrane protein) domain - - - 0.0006838 53.0
LYD1_k127_3201399_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 306.0
LYD1_k127_3201399_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000009967 119.0
LYD1_k127_3201399_2 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000005928 96.0
LYD1_k127_3212631_0 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003745 278.0
LYD1_k127_3212631_1 AI-2E family transporter - - - 0.0000000009889 66.0
LYD1_k127_3214561_0 membrane GTPase involved in stress response K06207 - - 5.323e-218 693.0
LYD1_k127_3214561_1 Pectate lyase - - - 0.000000000583 69.0
LYD1_k127_3219971_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 475.0
LYD1_k127_3219971_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006697 441.0
LYD1_k127_3219971_2 Belongs to the beta-ketoacyl-ACP synthases family K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 332.0
LYD1_k127_3219971_3 3-hydroxymyristoyl 3-hydroxydecanoyl-(acyl carrier protein) K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000141 167.0
LYD1_k127_3219971_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis - - - 0.0000000000000000000000000000000000000000001995 162.0
LYD1_k127_3219971_5 3-hydroxymyristoyl 3-hydroxydecanoyl-(acyl carrier protein) K02372 - 4.2.1.59 0.000000341 55.0
LYD1_k127_3221256_0 oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 361.0
LYD1_k127_3234652_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 289.0
LYD1_k127_3234652_1 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000002595 113.0
LYD1_k127_3234652_2 peptidylprolyl isomerase K03771 - 5.2.1.8 0.00007197 55.0
LYD1_k127_3238478_0 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003645 271.0
LYD1_k127_3238478_1 Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine) K01562,K07754 GO:0001654,GO:0001754,GO:0003407,GO:0003674,GO:0003824,GO:0004800,GO:0005575,GO:0005623,GO:0005886,GO:0006575,GO:0006590,GO:0006725,GO:0006807,GO:0006915,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009653,GO:0009887,GO:0009987,GO:0010721,GO:0010817,GO:0012501,GO:0016020,GO:0016491,GO:0018958,GO:0019336,GO:0019439,GO:0022008,GO:0022603,GO:0030154,GO:0030182,GO:0032501,GO:0032502,GO:0033798,GO:0040008,GO:0040014,GO:0040018,GO:0042219,GO:0042403,GO:0042404,GO:0042445,GO:0042447,GO:0042461,GO:0042462,GO:0042478,GO:0042480,GO:0042670,GO:0043010,GO:0044237,GO:0044248,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045927,GO:0046530,GO:0046532,GO:0046533,GO:0046549,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048592,GO:0048593,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051402,GO:0051960,GO:0051961,GO:0055114,GO:0060041,GO:0060042,GO:0060219,GO:0060284,GO:0065007,GO:0065008,GO:0070997,GO:0071704,GO:0071944,GO:0090596,GO:0097474,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1901616,GO:1990009,GO:2000026,GO:2000027 1.21.99.3,1.21.99.4 0.0000002584 63.0
LYD1_k127_3238478_2 Fibronectin type III domain protein - - - 0.000002423 60.0
LYD1_k127_3238478_3 Isochorismatase family K09020 - 3.5.1.110 0.0002224 51.0
LYD1_k127_3247815_0 Transglutaminase/protease-like homologues - - - 0.000000000000000000000001221 111.0
LYD1_k127_3247815_1 - - - - 0.0000000001985 68.0
LYD1_k127_3252626_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 448.0
LYD1_k127_3252626_1 Belongs to the DapA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 376.0
LYD1_k127_3252626_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 309.0
LYD1_k127_3252626_3 epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 304.0
LYD1_k127_3252626_4 aldo keto reductase K07079 - - 0.000000000000002676 88.0
LYD1_k127_3254759_0 undecaprenyl-phosphate glucose phosphotransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000703 229.0
LYD1_k127_3254759_1 PFAM Transmembrane exosortase (Exosortase_EpsH) - - - 0.0000000000000000000000000000000000000000001429 173.0
LYD1_k127_3254759_2 Chain length determinant protein K16554,K16692 - - 0.00000000000000000000000000000000000000004728 174.0
LYD1_k127_3254759_3 Tetratricopeptide repeat - - - 0.0000000001383 75.0
LYD1_k127_3255455_0 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000004661 193.0
LYD1_k127_3255455_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.000000000000000000000000000000000001299 153.0
LYD1_k127_3255455_2 Required for transformation and DNA binding K02245,K02456 GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000007018 85.0
LYD1_k127_3255455_3 Prokaryotic N-terminal methylation motif - - - 0.000000000001514 78.0
LYD1_k127_3267621_0 TIGRFAM ribonuclease, Rne Rng family K08300 - 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 410.0
LYD1_k127_3267621_1 Uncharacterized protein conserved in bacteria (DUF2344) - - - 0.00000000000007472 80.0
LYD1_k127_3272043_0 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 573.0
LYD1_k127_3272043_1 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000591 459.0
LYD1_k127_3272043_2 Xylose isomerase-like TIM barrel K03079 - 5.1.3.22 0.0000000000000000000000000000000000000000000000000000000000000000001999 239.0
LYD1_k127_3272043_3 PFAM Major Facilitator Superfamily K08153,K19576 - - 0.000000000000000009027 91.0
LYD1_k127_3279488_0 SAICAR synthetase K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007741 378.0
LYD1_k127_3279488_1 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000001153 81.0
LYD1_k127_3279488_2 Fosmidomycin resistance K08223 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0033554,GO:0042221,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071944 - 0.00000000000071 80.0
LYD1_k127_3279488_3 Sigma-70, region 4 - - - 0.00000000002432 71.0
LYD1_k127_3285254_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000429 237.0
LYD1_k127_3285254_1 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.00000000000000000000000000008703 117.0
LYD1_k127_329581_0 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 463.0
LYD1_k127_329581_1 and related - - - 0.0000000000000000000000000000000000000000000001096 173.0
LYD1_k127_329581_2 arabinogalactan endo-1,4-beta-galactosidase activity K01181,K01190 - 3.2.1.23,3.2.1.8 0.00000000000000000000000000000000000001093 166.0
LYD1_k127_3313074_0 oligosaccharyl transferase activity - - - 0.00005744 55.0
LYD1_k127_3332277_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002557 261.0
LYD1_k127_3332277_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000007406 226.0
LYD1_k127_3353674_0 PFAM peptidase K16922 - - 4.583e-196 634.0
LYD1_k127_3353674_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 531.0
LYD1_k127_3353674_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02022 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 443.0
LYD1_k127_3353674_3 AcrB/AcrD/AcrF family K03296 - - 0.00000000001014 76.0
LYD1_k127_3357443_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002403 275.0
LYD1_k127_3357443_1 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009077 267.0
LYD1_k127_3357443_2 phosphoenolpyruvate-dependent sugar phosphotransferase system K05881 - 2.7.1.121 0.000000000000000000000000000000000000000000000000000000000000000000001913 256.0
LYD1_k127_3357443_3 FMN binding K03809 - 1.6.5.2 0.00000000000000000000000000000000000000000000004491 173.0
LYD1_k127_3357443_4 3-hydroxymyristoyl 3-hydroxydecanoyl-(acyl carrier protein) K02372 - 4.2.1.59 0.00000000000000000000000000000000000000002642 157.0
LYD1_k127_3357443_5 HAD-hyrolase-like - - - 0.000000000000000000000000000004134 128.0
LYD1_k127_3364435_0 Zn_pept - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 572.0
LYD1_k127_3364435_1 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004055 251.0
LYD1_k127_3378089_0 peptidase S9 prolyl oligopeptidase active site - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 1.9e-322 994.0
LYD1_k127_3378089_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000001293 171.0
LYD1_k127_3378089_2 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000004844 103.0
LYD1_k127_3378089_3 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000004102 96.0
LYD1_k127_3382892_0 Protein of unknown function (DUF4038) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 537.0
LYD1_k127_3382892_1 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 356.0
LYD1_k127_3382892_2 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000003986 198.0
LYD1_k127_3382892_3 COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - - - 0.0000000004093 63.0
LYD1_k127_3382892_4 SPFH domain / Band 7 family - - - 0.0000001128 61.0
LYD1_k127_340654_0 Glucose dehydrogenase C-terminus K00008,K05351 - 1.1.1.14,1.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 394.0
LYD1_k127_340654_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00068 - 1.1.1.140 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 311.0
LYD1_k127_3409715_0 SMART Pyrrolo-quinoline quinone - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 440.0
LYD1_k127_3409715_1 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000001006 150.0
LYD1_k127_3409715_2 Belongs to the bacterial histone-like protein family - - - 0.0000000000000000000000000000009574 124.0
LYD1_k127_3409715_3 Flagellar biogenesis master sigma-54-dependent transcriptional response regulator - - - 0.0000000009745 69.0
LYD1_k127_3430726_0 BNR repeat-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 368.0
LYD1_k127_3430726_1 alginic acid biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 364.0
LYD1_k127_3430726_2 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.00000000000000000000000000000000000000000000003164 182.0
LYD1_k127_3430726_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 - 3.2.1.78 0.0000000005795 72.0
LYD1_k127_3430726_4 general secretion pathway protein K02456 - - 0.000000002555 67.0
LYD1_k127_3431777_0 PFAM MltA domain protein K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 492.0
LYD1_k127_3431777_1 general secretion pathway protein K02456 - - 0.000000000000007717 84.0
LYD1_k127_3431777_2 - - - - 0.0000000000001052 81.0
LYD1_k127_3431777_3 guanyl-nucleotide exchange factor activity K01179,K03929,K09612,K12287,K19701,K19702 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005623,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.2.1.4,3.4.11.10,3.4.11.24,3.4.11.6 0.000002959 61.0
LYD1_k127_3452146_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 286.0
LYD1_k127_3463439_0 L-rhamnose isomerase activity K00848,K01813 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0008270,GO:0008740,GO:0009056,GO:0009987,GO:0016043,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0019321,GO:0019324,GO:0022607,GO:0030145,GO:0030246,GO:0032991,GO:0033296,GO:0036094,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0046872,GO:0046914,GO:0048029,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901575 2.7.1.5,5.3.1.14 5.933e-202 635.0
LYD1_k127_3463439_1 Alcohol dehydrogenase GroES-like domain K19956 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003582 334.0
LYD1_k127_3463439_2 COG1457 Purine-cytosine permease and related proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000002739 240.0
LYD1_k127_3467924_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 6.614e-247 792.0
LYD1_k127_3467924_1 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 1.041e-243 770.0
LYD1_k127_3467924_10 best DB hits PFAM PF00114 - - - 0.00000001476 67.0
LYD1_k127_3467924_11 translation initiation factor activity K08086,K08372 - - 0.00001126 57.0
LYD1_k127_3467924_2 COG3119 Arylsulfatase A and related enzymes K01130 - 3.1.6.1 1.634e-243 767.0
LYD1_k127_3467924_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 452.0
LYD1_k127_3467924_4 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009453 365.0
LYD1_k127_3467924_5 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 346.0
LYD1_k127_3467924_6 PFAM PfkB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004898 293.0
LYD1_k127_3467924_7 choline-sulfatase K01133 - 3.1.6.6 0.000000000000000000000000000000000000000006807 164.0
LYD1_k127_3467924_8 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000006323 114.0
LYD1_k127_3467924_9 cytokinin biosynthetic process K06966 - 3.2.2.10 0.0000000000000000000000001083 113.0
LYD1_k127_3471094_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 540.0
LYD1_k127_3471094_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000531 133.0
LYD1_k127_3471094_2 Permease YjgP YjgQ family K11720 - - 0.0000005964 60.0
LYD1_k127_3471094_3 Protein of unknown function (DUF2490) - - - 0.0001428 52.0
LYD1_k127_3479952_0 oligopeptide transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 326.0
LYD1_k127_3479952_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000003345 235.0
LYD1_k127_3479952_2 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000003816 198.0
LYD1_k127_3516758_0 Nitrite/Sulfite reductase ferredoxin-like half domain - - - 3e-206 647.0
LYD1_k127_3516758_1 TIGRFAM sulfite reductase, dissimilatory-type beta subunit K11181 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 515.0
LYD1_k127_3516758_2 nitrate reductase, gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000882 261.0
LYD1_k127_3516758_3 4Fe-4S binding domain - - - 0.000000000000000001286 86.0
LYD1_k127_3524284_0 electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 320.0
LYD1_k127_3524284_1 electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000001261 243.0
LYD1_k127_3524284_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000002652 132.0
LYD1_k127_3544569_0 FAD dependent oxidoreductase - - - 1.72e-220 725.0
LYD1_k127_3544569_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 630.0
LYD1_k127_3544569_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000002194 232.0
LYD1_k127_3544569_3 spectrin binding - - - 0.000000000000000000000000001342 121.0
LYD1_k127_3544569_4 Carboxypeptidase D K07752 GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008064,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008236,GO:0008237,GO:0008238,GO:0008270,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010563,GO:0010605,GO:0010638,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016787,GO:0017171,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0030832,GO:0030833,GO:0030838,GO:0031224,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0031984,GO:0032268,GO:0032269,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034097,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042221,GO:0042325,GO:0042326,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043603,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045936,GO:0046872,GO:0046914,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051493,GO:0051495,GO:0051604,GO:0051716,GO:0051721,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070669,GO:0070887,GO:0071310,GO:0071345,GO:0071352,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0098791,GO:0110053,GO:0140096,GO:1901564,GO:1902903,GO:1902905 3.4.17.22 0.000000000000002993 81.0
LYD1_k127_3544569_5 DNA packaging K06909 - - 0.0000000000001475 83.0
LYD1_k127_3550427_0 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 591.0
LYD1_k127_3550427_1 PFAM Nitrate reductase gamma subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004652 289.0
LYD1_k127_3550427_2 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000001972 194.0
LYD1_k127_3550427_3 DsrC like protein - - - 0.000000000000000000000000000000000000000000000000000005185 190.0
LYD1_k127_3550427_4 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.00000000000000003644 83.0
LYD1_k127_3561352_0 PhoPQ-activated pathogenicity-related protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 501.0
LYD1_k127_3561352_1 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001065 267.0
LYD1_k127_3562986_0 symporter activity K03307 - - 1.18e-204 651.0
LYD1_k127_3562986_1 tagaturonate epimerase K21619 - 5.1.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000908 542.0
LYD1_k127_3562986_10 Sulfotransferase domain - - - 0.0004316 51.0
LYD1_k127_3562986_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 403.0
LYD1_k127_3562986_3 Pectate lyase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 398.0
LYD1_k127_3562986_4 Uroporphyrinogen decarboxylase (URO-D) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 373.0
LYD1_k127_3562986_5 thiolester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 322.0
LYD1_k127_3562986_6 domain, Protein K20276 - - 0.000000000000000000000000000000000000000000002048 181.0
LYD1_k127_3562986_7 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000001684 135.0
LYD1_k127_3562986_8 Lysin motif - - - 0.0000005755 58.0
LYD1_k127_3562986_9 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000497 56.0
LYD1_k127_3568240_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 305.0
LYD1_k127_3568240_1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.00000000000000000000000000000000000000000197 156.0
LYD1_k127_3577795_0 COG0768 Cell division protein FtsI penicillin-binding protein 2 K05515 - 3.4.16.4 0.00000000000000000000000000000004164 139.0
LYD1_k127_3577795_1 Domain of unknown function (DUF4190) - - - 0.000001301 60.0
LYD1_k127_3578839_0 Beta-galactosidase - - - 6.633e-215 688.0
LYD1_k127_3578839_1 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 584.0
LYD1_k127_3578839_2 Pectate lyase K01728 - 4.2.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002881 288.0
LYD1_k127_3578839_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000001381 164.0
LYD1_k127_3578839_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000003527 61.0
LYD1_k127_3578839_5 C-terminal region of aryl-sulfatase - - - 0.0000006137 57.0
LYD1_k127_3585593_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.0003421 53.0
LYD1_k127_3601572_0 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006929 358.0
LYD1_k127_3601572_1 Type I phosphodiesterase / nucleotide pyrophosphatase K01138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 326.0
LYD1_k127_3601572_2 Required for transformation and DNA binding K02245,K02456 GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944 - 0.000005742 55.0
LYD1_k127_3634798_0 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 466.0
LYD1_k127_3634798_1 Methane oxygenase PmoA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 355.0
LYD1_k127_3634798_2 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 349.0
LYD1_k127_3634798_3 COG1082 Sugar phosphate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007089 284.0
LYD1_k127_3634798_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000003823 192.0
LYD1_k127_3634798_5 domain protein K01637,K20276 - 4.1.3.1 0.000000000000001362 90.0
LYD1_k127_3634798_6 Pectate lyase - - - 0.00000000000002261 86.0
LYD1_k127_3634798_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000002274 60.0
LYD1_k127_3634798_8 Glycosyl hydrolases family 2, sugar binding domain - - - 0.00002825 57.0
LYD1_k127_3666530_0 PFAM ABC transporter K06020 - 3.6.3.25 1.115e-268 834.0
LYD1_k127_3666530_1 Domain of unknown function (DUF4976) K01137 - 3.1.6.14 1.693e-212 672.0
LYD1_k127_3666530_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000004362 237.0
LYD1_k127_3666530_3 Glycerol dehydrogenase and related enzymes K00096 - 1.1.1.261 0.0000000000000000000000000000000000000000000000000000000000008363 228.0
LYD1_k127_3666530_4 Domain of unknown function (DUF5060) - - - 0.0000000000005951 81.0
LYD1_k127_3669719_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 344.0
LYD1_k127_3669719_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 332.0
LYD1_k127_3669719_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004857 335.0
LYD1_k127_3669719_3 Required for transformation and DNA binding K02245,K02456 GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000002049 83.0
LYD1_k127_3669719_4 Prokaryotic N-terminal methylation motif - - - 0.00000000000002423 84.0
LYD1_k127_3679649_0 COG3119 Arylsulfatase A K01130 - 3.1.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009005 527.0
LYD1_k127_3679649_1 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003956 325.0
LYD1_k127_3679649_2 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 324.0
LYD1_k127_3679649_3 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000001147 59.0
LYD1_k127_368293_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 488.0
LYD1_k127_368293_1 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 351.0
LYD1_k127_368293_2 PFAM Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 329.0
LYD1_k127_368293_3 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003726 251.0
LYD1_k127_368293_4 N-acetylglucosaminylinositol deacetylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000807 218.0
LYD1_k127_3684251_0 Phosphoglycerate kinase K00927,K01803 - 2.7.2.3,5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 440.0
LYD1_k127_3684251_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 374.0
LYD1_k127_3684251_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 306.0
LYD1_k127_3684251_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000009599 229.0
LYD1_k127_3684251_4 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000005821 177.0
LYD1_k127_3684251_5 - - - - 0.00009355 52.0
LYD1_k127_3688039_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 4.264e-197 632.0
LYD1_k127_3712479_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 384.0
LYD1_k127_3712479_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179,K13276 - 3.2.1.4 0.000000005269 61.0
LYD1_k127_3712479_2 polysaccharide catabolic process - - - 0.00000005085 64.0
LYD1_k127_3712479_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 GO:0000041,GO:0003674,GO:0005215,GO:0005375,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006878,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010272,GO:0010273,GO:0015075,GO:0015318,GO:0015679,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030288,GO:0030313,GO:0031975,GO:0034220,GO:0035434,GO:0042221,GO:0042592,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046688,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060003,GO:0061687,GO:0065007,GO:0065008,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:1990169 - 0.0000001997 62.0
LYD1_k127_3717084_0 COG1073 Hydrolases of the alpha beta superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 581.0
LYD1_k127_3717084_1 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 454.0
LYD1_k127_3717084_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000002602 235.0
LYD1_k127_3717084_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000978 224.0
LYD1_k127_3717084_4 COG0639 Diadenosine tetraphosphatase and related - - - 0.0000000000000000000000000000000000000000000000000915 182.0
LYD1_k127_3740468_0 FtsX-like permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 489.0
LYD1_k127_3740468_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 431.0
LYD1_k127_3740468_2 4 iron, 4 sulfur cluster binding K02574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 381.0
LYD1_k127_3740468_3 - K03616 - - 0.0000000000000000000000000000000000000000000000000000000000002223 219.0
LYD1_k127_3740468_4 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000002655 212.0
LYD1_k127_3743236_0 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005856 612.0
LYD1_k127_3743236_1 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009465 594.0
LYD1_k127_3743236_2 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 381.0
LYD1_k127_3743236_3 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 363.0
LYD1_k127_3746787_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 288.0
LYD1_k127_3746787_1 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000001299 265.0
LYD1_k127_3746787_2 membrane protein (homolog of Drosophila rhomboid) - - - 0.00000000000000000000000000000004102 133.0
LYD1_k127_3754875_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006629 365.0
LYD1_k127_3754875_1 Two component transcriptional regulator, winged helix family - - - 0.0000000000000000005712 86.0
LYD1_k127_3760268_0 Beta-galactosidase - - - 0.000000000000000000000000000000000000000000000000000001949 198.0
LYD1_k127_3760268_1 alginic acid biosynthetic process - - - 0.0000000000000000000000000000000000000001009 166.0
LYD1_k127_3760268_2 Tetratricopeptide repeat - - - 0.00000000002014 68.0
LYD1_k127_3761552_0 Protein of unknown function (DUF1573) - - - 0.0000000444 64.0
LYD1_k127_3770424_0 Periplasmic copper-binding protein (NosD) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 612.0
LYD1_k127_3770424_1 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 393.0
LYD1_k127_3770424_2 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds K01502 - 3.5.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 334.0
LYD1_k127_3770424_3 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 316.0
LYD1_k127_3770424_4 mannitol metabolic process K00009 - 1.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000002474 261.0
LYD1_k127_3770424_5 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000004483 235.0
LYD1_k127_3770424_6 TIGRFAM signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000000000000000000000000000000000000209 196.0
LYD1_k127_3770424_7 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000002031 172.0
LYD1_k127_3770424_8 Cellulase (glycosyl hydrolase family 5) - - - 0.00000000000000000000000000000001202 144.0
LYD1_k127_3791966_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 437.0
LYD1_k127_3791966_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000001585 160.0
LYD1_k127_3791966_2 Glycosyl hydrolases family 28 - - - 0.000000000000000001295 100.0
LYD1_k127_3791966_3 Pectate lyase - - - 0.00000000000003426 85.0
LYD1_k127_3791966_4 PA14 - - - 0.00000005552 65.0
LYD1_k127_3814719_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000005568 220.0
LYD1_k127_3814719_1 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000002723 100.0
LYD1_k127_3814719_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000005407 104.0
LYD1_k127_381800_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 7.588e-197 633.0
LYD1_k127_381800_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205 1.562e-194 617.0
LYD1_k127_381800_2 aminotransferase class I and II K14261 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001205 255.0
LYD1_k127_381800_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000005831 170.0
LYD1_k127_381800_4 Domain of unknown function (DUF4160) - - - 0.000000000000000000000000000008132 120.0
LYD1_k127_381800_5 Protein of unknown function (DUF2442) - - - 0.000000000000000000002283 95.0
LYD1_k127_381800_6 Protein of unknown function (DUF2442) - - - 0.0000000000000000001025 91.0
LYD1_k127_381800_7 - - - - 0.00000000000000004417 88.0
LYD1_k127_3827416_0 Protein of unknown function (DUF1646) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 364.0
LYD1_k127_3827416_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004409 346.0
LYD1_k127_3827416_2 Prolyl oligopeptidase K01322 - 3.4.21.26 0.000000000000000000000000000000000000000000000000000000000000003663 220.0
LYD1_k127_3827416_3 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000002537 207.0
LYD1_k127_3827416_5 Protein of unknown function (DUF2442) - - - 0.000000000000000000008964 94.0
LYD1_k127_3827416_6 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000001518 83.0
LYD1_k127_3827416_7 Immunity protein 50 - - - 0.00000003555 61.0
LYD1_k127_3838792_0 COG3119 Arylsulfatase A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 518.0
LYD1_k127_3838792_1 GlcNAc-PI de-N-acetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002122 242.0
LYD1_k127_3854729_0 Arylsulfatase K01130 - 3.1.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008374 612.0
LYD1_k127_3854729_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000003408 235.0
LYD1_k127_3854729_2 Calcineurin-like phosphoesterase - - - 0.00000005049 61.0
LYD1_k127_3857689_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 405.0
LYD1_k127_3857689_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 387.0
LYD1_k127_3903197_0 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 567.0
LYD1_k127_3903197_1 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000529 225.0
LYD1_k127_3907278_0 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000005106 239.0
LYD1_k127_3907278_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000002747 130.0
LYD1_k127_3907278_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000005141 74.0
LYD1_k127_3916357_0 Dienelactone hydrolase - - - 2.274e-216 679.0
LYD1_k127_3916357_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 4.605e-212 673.0
LYD1_k127_3916357_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 414.0
LYD1_k127_3916357_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 346.0
LYD1_k127_3916357_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000011 206.0
LYD1_k127_3916357_5 Protein of unknown function DUF86 - - - 0.000000000000000000000000000000000000000000000000005746 184.0
LYD1_k127_3916357_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000001236 164.0
LYD1_k127_3916357_7 DNA alkylation repair enzyme - - - 0.00000000000000000000001213 102.0
LYD1_k127_3916357_8 - - - - 0.000002447 60.0
LYD1_k127_3916357_9 Nucleotidyltransferase domain - - - 0.000302 48.0
LYD1_k127_3917311_0 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 477.0
LYD1_k127_3917311_1 Bacterial protein of unknown function (Gcw_chp) - - - 0.000009616 55.0
LYD1_k127_393200_0 GHMP kinase K05305 - 2.7.1.52 5.169e-317 998.0
LYD1_k127_393200_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 375.0
LYD1_k127_393200_2 PFAM NAD-dependent epimerase dehydratase K01784,K10011,K12449 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006040,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016741,GO:0016742,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0022607,GO:0033319,GO:0033320,GO:0034214,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046349,GO:0046483,GO:0046677,GO:0048037,GO:0048040,GO:0050662,GO:0050896,GO:0051259,GO:0051287,GO:0055086,GO:0055114,GO:0065003,GO:0070403,GO:0071704,GO:0071840,GO:0097159,GO:0099618,GO:0099619,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2001313,GO:2001315 1.1.1.305,2.1.2.13,5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 363.0
LYD1_k127_393200_3 PFAM GTP cyclohydrolase I Nitrile oxidoreductase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000002201 241.0
LYD1_k127_393200_4 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000001446 133.0
LYD1_k127_393200_5 GHMP kinase K05305 - 2.7.1.52 0.0000000000000000000000002176 106.0
LYD1_k127_393200_6 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000704 111.0
LYD1_k127_393200_7 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000005248 85.0
LYD1_k127_393200_8 membrane protein involved in the export of O-antigen and teichoic acid - - - 0.00000000003247 76.0
LYD1_k127_3959874_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 425.0
LYD1_k127_3959874_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006259 318.0
LYD1_k127_3959874_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 310.0
LYD1_k127_3959874_3 PFAM SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004433 257.0
LYD1_k127_3959874_4 AMMECR1 K09141 - - 0.000000000000000002641 88.0
LYD1_k127_3959874_5 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives K02343 - 2.7.7.7 0.00005496 50.0
LYD1_k127_3970432_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 2.627e-217 690.0
LYD1_k127_3970432_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008542 290.0
LYD1_k127_3970432_2 - - - - 0.000000000000118 80.0
LYD1_k127_3985562_0 BlaR1 peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000006862 219.0
LYD1_k127_3985562_1 Penicillinase repressor - - - 0.000000000000000000000000000000000000001205 150.0
LYD1_k127_3985562_2 transmembrane transporter activity K05820 - - 0.000000000000000000000000001744 118.0
LYD1_k127_3985562_3 PFAM Peptidase M56, BlaR1 - - - 0.0000001131 57.0
LYD1_k127_3989963_0 pyrroloquinoline quinone binding K01206,K01218,K01342,K08651,K14645 - 3.2.1.51,3.2.1.78,3.4.21.62,3.4.21.66 0.0000000000000000000000000000000000000000106 178.0
LYD1_k127_3989963_1 PFAM Maf family protein K06287 - - 0.00000000000000000000000000000000003624 143.0
LYD1_k127_3989963_2 peptidase activity, acting on L-amino acid peptides K07004,K09955,K12287 - - 0.000000000000000000000000003782 130.0
LYD1_k127_3989963_3 Transcriptional K07979 - - 0.0000000000000000000004096 100.0
LYD1_k127_3989963_4 Pectate lyase - - - 0.00000000000003335 87.0
LYD1_k127_3989963_5 Belongs to the TPP enzyme family K01637 - 4.1.3.1 0.000000000002084 81.0
LYD1_k127_3989963_6 - - - - 0.0009857 51.0
LYD1_k127_3996913_0 PFAM glycoside hydrolase family 39 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 321.0
LYD1_k127_3996913_1 Domain of unknown function (DUF4186) - - - 0.000000000000000000000000000000000000000000004125 167.0
LYD1_k127_3996913_2 pfkB family carbohydrate kinase K00852 - 2.7.1.15 0.0000000000000000000000000000000000004081 153.0
LYD1_k127_4010648_0 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002787 277.0
LYD1_k127_4010648_1 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000007742 267.0
LYD1_k127_4010648_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000001686 210.0
LYD1_k127_4010648_3 - - - - 0.000000000000000000009362 101.0
LYD1_k127_4017157_0 The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation K16899 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 542.0
LYD1_k127_4025159_0 Alpha-1,2-mannosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 608.0
LYD1_k127_4025159_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 449.0
LYD1_k127_4025159_2 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 450.0
LYD1_k127_4025159_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 349.0
LYD1_k127_4025159_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 351.0
LYD1_k127_4025159_5 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004272 329.0
LYD1_k127_4025159_6 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443,K16786,K16787 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 298.0
LYD1_k127_4025159_7 Flavodoxin-like fold - - - 0.000000000000000000000000000000000000000002935 162.0
LYD1_k127_4025159_8 Protein of unknown function (DUF3568) - - - 0.000000002892 63.0
LYD1_k127_4025159_9 PFAM Glycosyl transferase, group 1 - - - 0.00002006 56.0
LYD1_k127_4038639_0 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000001233 220.0
LYD1_k127_4038639_1 S1, RNA binding domain K06959 - - 0.00000000000000000000000000000000000000000007959 162.0
LYD1_k127_404065_0 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000003389 207.0
LYD1_k127_404065_1 -acetyltransferase - - - 0.000000000000000000000000000000000000000002669 160.0
LYD1_k127_4043073_0 Pectate lyase K01179 - 3.2.1.4 0.0000000000000002632 93.0
LYD1_k127_4043073_1 cellulase activity - - - 0.00002195 57.0
LYD1_k127_4062660_0 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 0.0 1077.0
LYD1_k127_4062660_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 3.674e-196 629.0
LYD1_k127_4062660_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007982 440.0
LYD1_k127_4062660_3 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 370.0
LYD1_k127_4062660_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004785 275.0
LYD1_k127_4062660_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000003056 178.0
LYD1_k127_4062660_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016021,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.0000000000000000000000000003351 118.0
LYD1_k127_4062660_7 NADH ubiquinone oxidoreductase subunit K00342 - 1.6.5.3 0.0000000000000000008188 86.0
LYD1_k127_4062660_8 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00334,K00335 - 1.6.5.3 0.00000000000002172 72.0
LYD1_k127_4078299_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 593.0
LYD1_k127_4078299_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 401.0
LYD1_k127_4078299_2 ATP phosphoribosyltransferase K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 349.0
LYD1_k127_4078299_3 PDZ domain (Also known as DHR K11749 - - 0.00000000000000000000000000000000005855 151.0
LYD1_k127_4078299_4 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000002854 94.0
LYD1_k127_4078299_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000222 81.0
LYD1_k127_4078299_6 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000009182 77.0
LYD1_k127_4089440_0 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 389.0
LYD1_k127_4089440_1 - K01992 - - 0.000000000000000000000000000000000008605 137.0
LYD1_k127_4098977_0 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007235 249.0
LYD1_k127_4098977_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000005459 228.0
LYD1_k127_4110683_0 TIGRFAM amidohydrolase K12941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 610.0
LYD1_k127_4110683_1 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000005831 182.0
LYD1_k127_4110683_2 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000009077 135.0
LYD1_k127_4110683_3 alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000001595 72.0
LYD1_k127_4129331_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000922 461.0
LYD1_k127_4129331_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001487 274.0
LYD1_k127_4129331_2 - - - - 0.00000000000000000000000000000000000000000000000000000002267 207.0
LYD1_k127_4129331_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000005294 130.0
LYD1_k127_4129331_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000002762 108.0
LYD1_k127_4129331_5 Psort location Cytoplasmic, score K06217 - - 0.00002681 51.0
LYD1_k127_4133653_0 Sodium:solute symporter family - - - 1.474e-200 635.0
LYD1_k127_4133653_1 Acetyl xylan esterase (AXE1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 608.0
LYD1_k127_4133653_2 Domain of unknown function (DUF5107) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 420.0
LYD1_k127_4133653_3 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000023 274.0
LYD1_k127_4141525_0 Heparinase II/III-like protein K19051 GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006082,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008201,GO:0009056,GO:0009057,GO:0009987,GO:0016829,GO:0016835,GO:0016837,GO:0030202,GO:0030203,GO:0030211,GO:0042597,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044464,GO:0047488,GO:0071704,GO:0097367,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901681,GO:1903510 4.2.2.7,4.2.2.8 0.000000000000000000000000000000000000000000000000000006661 199.0
LYD1_k127_4141525_1 Transglutaminase-like superfamily - - - 0.0000000000000000000000000003474 132.0
LYD1_k127_4141525_2 Thermophilic metalloprotease (M29) - - - 0.000000000000000000000004705 109.0
LYD1_k127_4146064_0 BNR repeat-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 497.0
LYD1_k127_4146064_1 Dihydrodipicolinate reductase, N-terminus - - - 0.0000000000000000000000000000000000000000000000000000002096 199.0
LYD1_k127_416532_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003598 256.0
LYD1_k127_4167016_0 general secretion pathway protein D K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000207 256.0
LYD1_k127_4167016_1 Type II secretion system (T2SS), protein K - - - 0.000000000000000000000000000006429 136.0
LYD1_k127_4167016_2 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.0009289 51.0
LYD1_k127_4170526_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000001484 131.0
LYD1_k127_4170526_1 COG1674 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.0000000000000000106 95.0
LYD1_k127_4205290_0 Alpha-L-arabinofuranosidase C-terminus K01209 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 454.0
LYD1_k127_4205290_1 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000005949 143.0
LYD1_k127_4205290_2 - - - - 0.0000000000000000000000007016 105.0
LYD1_k127_4288679_0 of ABC transporters with duplicated ATPase K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 407.0
LYD1_k127_4288679_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 307.0
LYD1_k127_4288679_2 PFAM Acyl-ACP thioesterase - - - 0.0000000000000000000000000000000000002077 151.0
LYD1_k127_4289756_0 Protein of unknown function (DUF1593) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 490.0
LYD1_k127_4289756_1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141,K19190 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019720,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061602,GO:0070567,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902759,GO:1902760 1.1.1.328,2.7.7.76 0.000000000000000000000000000000000000000000008428 171.0
LYD1_k127_4301113_0 BAAT / Acyl-CoA thioester hydrolase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 451.0
LYD1_k127_4301113_1 COGs COG4299 conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 382.0
LYD1_k127_4301113_2 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 388.0
LYD1_k127_4301113_3 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000004303 199.0
LYD1_k127_4301113_4 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000001017 196.0
LYD1_k127_4311411_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 490.0
LYD1_k127_4311411_1 of the beta-lactamase K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000001271 231.0
LYD1_k127_4311411_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000001231 220.0
LYD1_k127_4336550_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 585.0
LYD1_k127_4336550_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000001441 147.0
LYD1_k127_4336550_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000001001 114.0
LYD1_k127_4336550_3 - - - - 0.000003735 52.0
LYD1_k127_434482_0 protein localization to T-tubule K10380 - - 0.0000000000000000000000000000000000002691 152.0
LYD1_k127_434482_1 domain, Protein K15125 - - 0.000000000000000000000000000005228 137.0
LYD1_k127_4358540_0 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000001368 208.0
LYD1_k127_4358540_1 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000001294 199.0
LYD1_k127_4358540_2 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.00000000000000000000000000000000000000002072 168.0
LYD1_k127_4377139_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 540.0
LYD1_k127_4377139_1 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000003117 109.0
LYD1_k127_4377139_2 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.00000000000006125 81.0
LYD1_k127_4377139_3 protein kinase related protein - - - 0.00001562 55.0
LYD1_k127_4381847_0 Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 496.0
LYD1_k127_4381847_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 314.0
LYD1_k127_4381847_2 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003613 276.0
LYD1_k127_4384507_0 PFAM Transmembrane exosortase (Exosortase_EpsH) - - - 0.00002414 55.0
LYD1_k127_4393457_0 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000009128 258.0
LYD1_k127_4393457_1 - - - - 0.0000000000000000000000000000000007982 133.0
LYD1_k127_4393457_2 Domain of unknown function (DUF4870) K09940 - - 0.00000000000000000000000000000009827 129.0
LYD1_k127_4393457_3 Domain of unknown function (DUF4870) K09940 - - 0.0000000000000000000003776 104.0
LYD1_k127_4403953_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002125 274.0
LYD1_k127_4403953_1 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000001047 192.0
LYD1_k127_4403953_2 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000001756 146.0
LYD1_k127_4403953_3 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.0000000000000000001624 93.0
LYD1_k127_4416324_0 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000001022 241.0
LYD1_k127_4416324_1 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000001159 165.0
LYD1_k127_4416324_2 PEP-CTERM motif - - - 0.000000000000000000000000000000275 132.0
LYD1_k127_4416324_3 - - - - 0.00000000000000000000009165 103.0
LYD1_k127_4416324_4 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.0000000000000000000009181 101.0
LYD1_k127_4416324_5 Belongs to the IPP transferase family K00791 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000002204 75.0
LYD1_k127_4416324_6 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01077 - 3.1.3.1 0.000000002565 70.0
LYD1_k127_4416324_7 Allergen V5 Tpx-1 family protein - - - 0.0003491 52.0
LYD1_k127_4435837_0 Cytochrome c - - - 1.693e-246 766.0
LYD1_k127_4435837_1 beta-N-acetylhexosaminidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001498 275.0
LYD1_k127_4435837_2 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.0000000000000002767 85.0
LYD1_k127_4447359_0 - - - - 0.0000000000000000000000000000000000000000000000000000000006517 209.0
LYD1_k127_4447359_1 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000001445 135.0
LYD1_k127_444877_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 424.0
LYD1_k127_444877_1 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 382.0
LYD1_k127_444877_2 Natural resistance-associated macrophage protein K03322 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005483 292.0
LYD1_k127_444877_3 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000002807 234.0
LYD1_k127_444877_4 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 GO:0003674,GO:0003700,GO:0006139,GO:0006220,GO:0006221,GO:0006355,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0031323,GO:0031326,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0090407,GO:0140110,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141 2.4.2.9 0.0000000000000000000000000000000000000000000003444 172.0
LYD1_k127_444877_5 TIGRFAM clan AA aspartic protease, AF_0612 family - - - 0.000000000000000000000000000000000000000000002503 167.0
LYD1_k127_444877_6 epimerase - - - 0.000000000000000000000000001618 115.0
LYD1_k127_444877_7 Subtilase family - - - 0.000000000008245 78.0
LYD1_k127_444877_8 YacP-like NYN domain K06962 - - 0.00000000007262 69.0
LYD1_k127_4452155_0 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005658 256.0
LYD1_k127_4452155_1 O-methyltransferase - - - 0.000000000000000000000000000000001159 138.0
LYD1_k127_4452155_2 O-methyltransferase K00588 - 2.1.1.104 0.00005664 47.0
LYD1_k127_4459077_0 Oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 485.0
LYD1_k127_4459077_1 PFAM DAHP synthetase I KDSA K01626,K03856,K04516,K13853 - 2.5.1.54,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 401.0
LYD1_k127_4459077_2 Belongs to the purine-cytosine permease (2.A.39) family K10974 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007147 365.0
LYD1_k127_4459077_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003722 271.0
LYD1_k127_4459077_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000001579 244.0
LYD1_k127_4459077_5 ApbE family - - - 0.000000000000000000000000000000000000000000000000000000000000002034 229.0
LYD1_k127_4459077_6 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000002747 161.0
LYD1_k127_4459077_7 Prokaryotic N-terminal methylation motif - - - 0.0000000000001196 81.0
LYD1_k127_4459077_8 Zinc dependent phospholipase C - - - 0.000009647 57.0
LYD1_k127_4483555_0 - - - - 2.21e-220 692.0
LYD1_k127_4483555_1 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 1.412e-205 665.0
LYD1_k127_4483555_2 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 596.0
LYD1_k127_4483555_3 negative regulation of protein lipidation K19294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 422.0
LYD1_k127_4483555_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006885 372.0
LYD1_k127_4483555_5 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 332.0
LYD1_k127_4483555_6 SGNH hydrolase-like domain, acetyltransferase AlgX K19295 - - 0.0000000000000000000000000000000000000000000000006949 189.0
LYD1_k127_4483555_7 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000006896 78.0
LYD1_k127_4483555_8 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000001077 81.0
LYD1_k127_4483555_9 - - - - 0.000000000002267 73.0
LYD1_k127_4518374_0 Ribosomal protein S1 K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006716 537.0
LYD1_k127_4518374_1 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 299.0
LYD1_k127_4530974_0 protein kinase related protein - - - 1.156e-203 653.0
LYD1_k127_4530974_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 590.0
LYD1_k127_4530974_2 Protein of unknown function (DUF2961) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 587.0
LYD1_k127_4530974_3 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 520.0
LYD1_k127_4530974_4 AraC-type transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 292.0
LYD1_k127_4530974_5 Pfam Family of - - - 0.00000000000004352 74.0
LYD1_k127_453184_0 Chitobiase/beta-hexosaminidase C-terminal domain K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 577.0
LYD1_k127_453184_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 363.0
LYD1_k127_453184_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000000000000002934 107.0
LYD1_k127_453184_3 Bacterial type II/III secretion system short domain K02453 - - 0.00000000000000001341 97.0
LYD1_k127_453184_4 Nucleotidyltransferase domain - - - 0.000001045 55.0
LYD1_k127_4537664_0 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000248 232.0
LYD1_k127_4540193_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 557.0
LYD1_k127_4540193_1 transcription initiation from RNA polymerase III promoter K03022 GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 501.0
LYD1_k127_4540193_2 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.00000000000000000000000000000000000002486 156.0
LYD1_k127_4540193_3 CAAX prenyl protease N-terminal, five membrane helices K06013 - 3.4.24.84 0.00005582 55.0
LYD1_k127_460749_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 410.0
LYD1_k127_460749_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 342.0
LYD1_k127_460749_2 Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 321.0
LYD1_k127_460749_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 303.0
LYD1_k127_460749_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000001112 181.0
LYD1_k127_4623976_0 COG1077 Actin-like ATPase involved in cell morphogenesis K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 507.0
LYD1_k127_4623976_1 Transposase - - - 0.00000278 58.0
LYD1_k127_4660164_0 cell wall glycoprotein biosynthetic process - - - 1.649e-215 673.0
LYD1_k127_4660164_1 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 351.0
LYD1_k127_4660164_2 aldo keto reductase K07079 - - 0.00000000004639 74.0
LYD1_k127_4660164_3 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000007814 57.0
LYD1_k127_4666755_0 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.000000000000002055 78.0
LYD1_k127_4666755_1 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000009177 67.0
LYD1_k127_4690942_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000009205 247.0
LYD1_k127_4721539_0 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 3.534e-281 872.0
LYD1_k127_4721539_1 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000003597 252.0
LYD1_k127_4721539_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000002576 208.0
LYD1_k127_4721539_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000001864 177.0
LYD1_k127_4721539_4 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000001925 151.0
LYD1_k127_4721539_5 Prokaryotic N-terminal methylation motif - - - 0.00000000002106 76.0
LYD1_k127_4721539_6 COG NOG04001 non supervised orthologous group K15923 - 3.2.1.51 0.00000001646 58.0
LYD1_k127_4721539_7 Domain of unknown function (DUF1844) - - - 0.0000001172 58.0
LYD1_k127_4733164_0 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.0000000000000000000000000000000000000005097 151.0
LYD1_k127_4733164_1 - - - - 0.000000008828 63.0
LYD1_k127_4754160_0 domain, Protein - - - 0.00002355 58.0
LYD1_k127_4754160_1 PA14 domain - - - 0.00003227 57.0
LYD1_k127_4754160_2 Alpha galactosidase A K07407 - 3.2.1.22 0.0002227 55.0
LYD1_k127_4775534_0 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007288 273.0
LYD1_k127_4775534_1 - - - - 0.000000002453 63.0
LYD1_k127_4777321_0 Sulfatase-modifying factor enzyme 1 - - - 1.492e-251 815.0
LYD1_k127_4777321_1 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 555.0
LYD1_k127_4777321_2 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 331.0
LYD1_k127_4777321_3 Transcriptional regulator - - - 0.000000002534 63.0
LYD1_k127_4777321_4 abc-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000002179 59.0
LYD1_k127_4778526_0 symporter activity K03307 - - 1.059e-284 885.0
LYD1_k127_4778526_1 Belongs to the ribulokinase family K00853 - 2.7.1.16 6.914e-226 711.0
LYD1_k127_4778526_2 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000919 500.0
LYD1_k127_4778526_3 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000000006996 210.0
LYD1_k127_4778526_4 Protein of unknown function, DUF547 - - - 0.00000000000000000000000000000000000000000000000000006113 200.0
LYD1_k127_4792929_0 PFAM Bile acid sodium symporter K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 508.0
LYD1_k127_4792929_1 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 490.0
LYD1_k127_4792929_2 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K00018 - 1.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 414.0
LYD1_k127_4792929_3 Hypothetical glycosyl hydrolase 6 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 368.0
LYD1_k127_4792929_4 PFAM CO dehydrogenase acetyl-CoA synthase delta subunit, TIM barrel K00197 - 2.1.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 327.0
LYD1_k127_4792929_5 2-oxopent-4-enoate hydratase activity K01617,K02509,K02554,K18364 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0008150,GO:0008152,GO:0008684,GO:0009056,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0019439,GO:0030145,GO:0042802,GO:0043167,GO:0043169,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914 4.1.1.77,4.2.1.132,4.2.1.80 0.0000000000000000000000000000000000002374 152.0
LYD1_k127_4792929_6 4Fe-4S binding domain - - - 0.00000000000000000000000000000000002921 136.0
LYD1_k127_4792929_7 -acetyltransferase - - - 0.000000000000000000000000000002942 126.0
LYD1_k127_4792929_8 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000005942 98.0
LYD1_k127_4793604_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 310.0
LYD1_k127_4793604_1 BrnA antitoxin of type II toxin-antitoxin system - - - 0.0000000000007607 68.0
LYD1_k127_4793604_2 BrnA antitoxin of type II toxin-antitoxin system - - - 0.0002844 47.0
LYD1_k127_4795166_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 327.0
LYD1_k127_4848541_0 Belongs to the glycosyl hydrolase family 6 - - - 2.728e-215 678.0
LYD1_k127_4848541_1 general secretion pathway protein K02456 - - 0.000000000000000002127 95.0
LYD1_k127_4849650_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 449.0
LYD1_k127_4849650_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000006291 217.0
LYD1_k127_4849650_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000003615 192.0
LYD1_k127_4849650_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.000000000001086 70.0
LYD1_k127_4856257_0 ABC-type sugar transport system, ATPase component K10441 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 546.0
LYD1_k127_4856257_1 Periplasmic binding protein domain K10439 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 347.0
LYD1_k127_4856257_2 Branched-chain amino acid transport system / permease component K10440 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003857 340.0
LYD1_k127_4856257_3 NAD-dependent epimerase dehydratase K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 305.0
LYD1_k127_4856257_4 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002978 290.0
LYD1_k127_4856257_5 PFAM Inosine uridine-preferring nucleoside hydrolase K01239 - 3.2.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004142 293.0
LYD1_k127_4856257_6 arylsulfatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001217 271.0
LYD1_k127_4856257_7 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000009025 66.0
LYD1_k127_4858958_0 Belongs to the PdxA family K22024 - 1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 328.0
LYD1_k127_4858958_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000001776 239.0
LYD1_k127_4858958_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000000000000000000001753 212.0
LYD1_k127_4858958_3 riboflavin synthase alpha chain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000263 181.0
LYD1_k127_4858958_4 general secretion pathway protein - - - 0.000000000003206 76.0
LYD1_k127_4858958_5 PFAM PPIC-type K03769 - 5.2.1.8 0.0000000002941 66.0
LYD1_k127_4870124_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008764 424.0
LYD1_k127_4870124_1 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 383.0
LYD1_k127_4870124_2 Inosine-uridine preferring nucleoside hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 342.0
LYD1_k127_4870124_3 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579 344.0
LYD1_k127_4870124_4 Putative TM nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000001762 213.0
LYD1_k127_4870124_5 - - - - 0.000000000000000000000000002387 129.0
LYD1_k127_4870124_6 Passenger-associated-transport-repeat - - - 0.0001389 54.0
LYD1_k127_4870124_7 metallocarboxypeptidase activity K14054 - - 0.0003676 45.0
LYD1_k127_4871701_0 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 411.0
LYD1_k127_4871701_1 Utp--glucose-1-phosphate uridylyltransferase K00972,K11442 - 2.7.7.23,2.7.7.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009369 396.0
LYD1_k127_4871701_2 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003138 369.0
LYD1_k127_4871701_3 Sigma-70 region 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000184 226.0
LYD1_k127_4878744_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 1.112e-204 646.0
LYD1_k127_4878744_1 NADH-quinone oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 577.0
LYD1_k127_4878744_2 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000009838 171.0
LYD1_k127_4878744_3 CTP reductase activity K21636 - 1.1.98.6 0.0000000000003949 78.0
LYD1_k127_4899373_0 TOBE domain K15497 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000001735 254.0
LYD1_k127_4899373_1 ATPase-coupled sulfate transmembrane transporter activity K02018 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000001259 207.0
LYD1_k127_4899373_2 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000000000000008364 113.0
LYD1_k127_4899373_3 - - - - 0.0000000000000617 78.0
LYD1_k127_4910420_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 320.0
LYD1_k127_4910420_1 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.00000000000000000000000000000000000000001836 166.0
LYD1_k127_49157_0 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007903 497.0
LYD1_k127_49157_1 ioli protein K06606 - 5.3.99.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 381.0
LYD1_k127_49157_2 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 380.0
LYD1_k127_49157_3 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 357.0
LYD1_k127_49157_4 Uncharacterized protein family UPF0016 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003566 254.0
LYD1_k127_49157_5 Protein of unknown function (DUF1638) - - - 0.00000000000000000000000000000000000000000000000000000000000000000004348 238.0
LYD1_k127_49157_6 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000003491 132.0
LYD1_k127_49157_7 manganese ion transmembrane transporter activity - - - 0.0000000000000000000000000000001359 127.0
LYD1_k127_49157_8 Staphylococcal nuclease homologue K01174 - 3.1.31.1 0.000000001792 68.0
LYD1_k127_49157_9 Domain of unknown function (DUF1805) - - - 0.0001627 48.0
LYD1_k127_4920563_0 Domain of unknown function (DUF4956) - - - 0.0000000000000000000000000364 114.0
LYD1_k127_4920563_1 VTC domain - - - 0.0000003567 61.0
LYD1_k127_4924819_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 508.0
LYD1_k127_4924819_1 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008673 296.0
LYD1_k127_4925551_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 337.0
LYD1_k127_4925551_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005184 267.0
LYD1_k127_4936743_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001576 282.0
LYD1_k127_4936743_1 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000000000000000000000000003585 198.0
LYD1_k127_4943214_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 5.53e-278 871.0
LYD1_k127_4943214_1 Aspartate-ammonia ligase K01914 GO:0003674,GO:0003824,GO:0004071,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.1.1 1.88e-209 657.0
LYD1_k127_4943214_10 Iron (Metal) dependent repressor, DtxR family K03709 - - 0.0000000000000000000000000000000000129 141.0
LYD1_k127_4943214_11 PFAM Transcription termination factor nusG K05785 - - 0.000000000000000000000000000001497 127.0
LYD1_k127_4943214_12 Protein of unknown function DUF86 - - - 0.0000000000000000136 84.0
LYD1_k127_4943214_13 FeoA K04758 - - 0.00000000000009333 74.0
LYD1_k127_4943214_14 DNA polymerase beta domain protein region K07075 - - 0.0000000000001134 74.0
LYD1_k127_4943214_15 RDD family - - - 0.000000000002316 75.0
LYD1_k127_4943214_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02472,K02474,K13015 - 1.1.1.136,1.1.1.336 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 550.0
LYD1_k127_4943214_3 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 470.0
LYD1_k127_4943214_4 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 432.0
LYD1_k127_4943214_5 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007806 366.0
LYD1_k127_4943214_6 Xylose isomerase-like TIM barrel K03335 - 4.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 321.0
LYD1_k127_4943214_7 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001668 263.0
LYD1_k127_4943214_8 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000005628 204.0
LYD1_k127_4943214_9 - - - - 0.000000000000000000000000000000000000000000000000000002104 199.0
LYD1_k127_5026817_0 General secretion pathway protein F K02455,K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007474 256.0
LYD1_k127_5026817_1 general secretion pathway protein G K02456 - - 0.000000000000000000000000008245 115.0
LYD1_k127_5026817_2 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.00000546 48.0
LYD1_k127_5029170_0 Domain of unknown function (DUF4838) - - - 1.374e-217 696.0
LYD1_k127_5029170_1 Phosphorylase superfamily K01243 - 3.2.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000002791 256.0
LYD1_k127_5029170_2 PFAM Xanthine uracil vitamin C permease K06901 - - 0.0000000000000000000000000000000000000000007169 162.0
LYD1_k127_5029170_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000008514 52.0
LYD1_k127_5056026_0 metallocarboxypeptidase activity K14054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 295.0
LYD1_k127_5056026_1 polygalacturonase activity - - - 0.0000000000000000000000000001141 121.0
LYD1_k127_5056035_0 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 352.0
LYD1_k127_5056035_1 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002778 269.0
LYD1_k127_5056035_2 - - - - 0.00009078 55.0
LYD1_k127_5063929_0 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 371.0
LYD1_k127_5063929_1 Disaggregatase related - - - 0.0000000000000008606 92.0
LYD1_k127_5063929_2 Pectate lyase - - - 0.000000000002684 80.0
LYD1_k127_5063929_3 general secretion pathway protein K02456 - - 0.00000000006526 69.0
LYD1_k127_5063929_4 arylsulfatase activity - - - 0.000002767 61.0
LYD1_k127_5077293_0 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000156 162.0
LYD1_k127_5077293_1 Group 1 family - - - 0.00000000000000002139 86.0
LYD1_k127_5078024_0 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 526.0
LYD1_k127_5078024_1 TIGRFAM prepilin-type N-terminal cleavage methylation domain - - - 0.000000000006953 76.0
LYD1_k127_5078024_2 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.00000000003018 65.0
LYD1_k127_5078024_3 - - - - 0.0000000001919 64.0
LYD1_k127_5078786_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 5.404e-225 719.0
LYD1_k127_5078786_1 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666,K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 495.0
LYD1_k127_5078786_2 NAD synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 357.0
LYD1_k127_5078786_3 Glycosyl transferase family 2 - - - 0.0000005545 54.0
LYD1_k127_5095338_0 Aminotransferase class-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 522.0
LYD1_k127_5095338_1 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 433.0
LYD1_k127_5095338_2 inositol 2-dehydrogenase activity K18106 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006564 425.0
LYD1_k127_5095338_3 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 330.0
LYD1_k127_5095338_4 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000007688 226.0
LYD1_k127_5095338_5 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00176 - 1.2.7.3 0.0000000000000000624 84.0
LYD1_k127_5096507_0 NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 396.0
LYD1_k127_5096507_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000002833 200.0
LYD1_k127_5096507_3 Phosphoglycerate mutase K15634 - 5.4.2.12 0.000002693 57.0
LYD1_k127_5105035_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 1.643e-207 654.0
LYD1_k127_5105035_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 409.0
LYD1_k127_5105035_2 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008124 316.0
LYD1_k127_5105035_3 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000139 223.0
LYD1_k127_5105035_4 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000002903 170.0
LYD1_k127_5105035_5 Protein of unknown function DUF45 K07043 - - 0.000000000000000000000000000000005123 136.0
LYD1_k127_5105035_6 - - - - 0.0000000000000001285 95.0
LYD1_k127_510514_0 glucuronate isomerase activity K01812 GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0019585,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0042839,GO:0042840,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0071704,GO:0072329,GO:1901575 5.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 455.0
LYD1_k127_510514_1 Glucuronate isomerase K01812 - 5.3.1.12 0.0000000000000000000000000000000000000000000000000004012 185.0
LYD1_k127_511058_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 578.0
LYD1_k127_511058_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 406.0
LYD1_k127_511058_2 Aldo Keto reductase - - - 0.000000000000000000000000000000000000000000003712 168.0
LYD1_k127_511058_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000002004 150.0
LYD1_k127_5122870_0 Electron transfer flavoprotein, alpha subunit K03522 - - 7.566e-263 827.0
LYD1_k127_5122870_1 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 465.0
LYD1_k127_512396_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005248 403.0
LYD1_k127_512396_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000007358 228.0
LYD1_k127_512396_2 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000002415 184.0
LYD1_k127_512396_3 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000004928 169.0
LYD1_k127_512396_4 PFAM Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000001745 139.0
LYD1_k127_512396_5 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000006916 125.0
LYD1_k127_512396_6 - - - - 0.00001661 47.0
LYD1_k127_5139313_0 family protein, PEP-CTERM locus subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000003374 239.0
LYD1_k127_5139313_1 TIGRFAM FemAB-related protein, PEP-CTERM - - - 0.00000000000000000000000000000000000000000000000000000000000000004063 235.0
LYD1_k127_5139313_3 - - - - 0.0000000000000000000008776 103.0
LYD1_k127_5139313_4 kinase activity K02850 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0044237 - 0.000000000000000000002151 106.0
LYD1_k127_5139313_5 ABC transporter - - - 0.0000000000000000003199 87.0
LYD1_k127_514958_0 Alpha-L-rhamnosidase - - - 0.0000000000000000000000000000000000000000000000000000000000009738 218.0
LYD1_k127_514958_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000002303 74.0
LYD1_k127_5151189_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007477 307.0
LYD1_k127_5151189_1 Domain of unknown function (DUF1972) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001814 277.0
LYD1_k127_5160874_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004906 518.0
LYD1_k127_5160874_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 394.0
LYD1_k127_5160874_2 Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001973 274.0
LYD1_k127_5160874_3 Glucokinase K00845 GO:0003674,GO:0003824,GO:0004340,GO:0004396,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019637,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044464,GO:0046835,GO:0051156,GO:0071704,GO:1901135 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000002951 243.0
LYD1_k127_5160874_4 - - - - 0.000008486 56.0
LYD1_k127_5191419_0 Phosphoenolpyruvate synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002833 272.0
LYD1_k127_5191419_1 COG3119 Arylsulfatase A K01134 - 3.1.6.8 0.00000000000000000000000000000000000000000000000000000002307 198.0
LYD1_k127_5191419_2 C-terminal region of aryl-sulfatase - - - 0.00000000000000000000000000000000000000000000004562 181.0
LYD1_k127_5214272_0 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006278 246.0
LYD1_k127_5214272_1 5'-nucleotidase - - - 0.00000000000000000000000000000000000000000000000009287 195.0
LYD1_k127_5214272_2 Protein of unknown function (DUF3795) - - - 0.00000000000000001139 87.0
LYD1_k127_5214272_3 Protein of unknown function (DUF1573) - - - 0.000002034 59.0
LYD1_k127_5228809_0 Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms K07027,K14205 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.3.2.3 5.357e-260 824.0
LYD1_k127_5242036_0 Transglutaminase-like superfamily - - - 1.371e-317 991.0
LYD1_k127_5242036_1 dehydrogenases and related proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
LYD1_k127_5242036_2 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000000000000000000001882 122.0
LYD1_k127_5242036_3 Putative collagen-binding domain of a collagenase - - - 0.000000000000007811 79.0
LYD1_k127_5245801_0 Glycosyl hydrolases family 2 - - - 7.57e-306 963.0
LYD1_k127_5245801_1 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 535.0
LYD1_k127_5245801_3 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000001524 152.0
LYD1_k127_5280117_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 349.0
LYD1_k127_5280117_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 347.0
LYD1_k127_5280117_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003909 287.0
LYD1_k127_5283388_0 Endoribonuclease L-PSP - - - 0.0000000000000000000001929 108.0
LYD1_k127_5283388_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000002541 67.0
LYD1_k127_5289302_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000001359 201.0
LYD1_k127_5331647_0 PFAM oxidoreductase FAD NAD(P)-binding domain protein, Ferric reductase domain protein transmembrane component domain-containing protein, FAD-binding 8 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006494 265.0
LYD1_k127_5343247_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 302.0
LYD1_k127_5343247_1 biosynthesis protein K16710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008991 259.0
LYD1_k127_5343247_2 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000266 154.0
LYD1_k127_5359275_0 Seven times multi-haem cytochrome CxxCH - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 535.0
LYD1_k127_5359275_1 2-epimerase K16213 - 5.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 488.0
LYD1_k127_536900_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1552.0
LYD1_k127_5377475_0 Belongs to the CarA family K01956 GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0040007,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 467.0
LYD1_k127_5377475_1 Belongs to the CarB family K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 360.0
LYD1_k127_5388195_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1401.0
LYD1_k127_5422282_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 5.676e-202 650.0
LYD1_k127_5422282_1 COG3119 Arylsulfatase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 358.0
LYD1_k127_5422282_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005166 353.0
LYD1_k127_5422282_3 HI0933 family K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 326.0
LYD1_k127_5451370_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 485.0
LYD1_k127_5451370_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000001936 232.0
LYD1_k127_5451370_2 binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000017 145.0
LYD1_k127_5451370_3 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000004777 85.0
LYD1_k127_5454125_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 550.0
LYD1_k127_5454125_1 Putative oxidoreductase C terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 437.0
LYD1_k127_5454125_2 Neutral/alkaline non-lysosomal ceramidase, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 307.0
LYD1_k127_5456994_0 polysaccharide export K01991 - - 0.00000000000000000000000000000000000000000000000003888 200.0
LYD1_k127_5456994_1 PFAM Transmembrane exosortase (Exosortase_EpsH) - - - 0.000000000000000000000000002142 123.0
LYD1_k127_5466699_0 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 340.0
LYD1_k127_5466699_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000001994 72.0
LYD1_k127_5471920_0 Protein of unknown function (DUF2867) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 314.0
LYD1_k127_5471920_1 pathogenesis K06972,K18195 - 4.2.2.23 0.00000000000000000000000000000001163 140.0
LYD1_k127_547659_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 299.0
LYD1_k127_547659_1 pyrroloquinoline quinone binding K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000004542 258.0
LYD1_k127_547659_2 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000001051 239.0
LYD1_k127_547659_3 COG0534 Na -driven multidrug efflux pump K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000362 235.0
LYD1_k127_547659_4 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000000002447 211.0
LYD1_k127_547659_5 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000008203 215.0
LYD1_k127_547659_6 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03972 - - 0.00000000000000000000000036 110.0
LYD1_k127_547659_7 DUF167 K09131 - - 0.000000008064 61.0
LYD1_k127_5477704_0 L-fucose isomerase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006156 481.0
LYD1_k127_5488936_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008563 557.0
LYD1_k127_5488936_1 Phospholipase/Carboxylesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001286 278.0
LYD1_k127_5488936_2 RNA pseudouridylate synthase K06178 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000001897 228.0
LYD1_k127_5488936_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000007369 201.0
LYD1_k127_5488936_4 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000005833 184.0
LYD1_k127_5488936_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000001498 120.0
LYD1_k127_5488936_6 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000003286 95.0
LYD1_k127_5509867_0 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 464.0
LYD1_k127_5509867_1 Cyclophilin-like K09143 - - 0.000000000000000000000000000000000001972 141.0
LYD1_k127_5509867_2 TIGRFAM Hopanoid biosynthesis associated radical SAM protein HpnJ - - - 0.00000000005566 71.0
LYD1_k127_5535811_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1137.0
LYD1_k127_5559483_0 CBS domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 363.0
LYD1_k127_5559483_1 mannose-6-phosphate isomerase, class I K01809 - 5.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000001656 261.0
LYD1_k127_5559483_2 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000000000000000000000000000000000000000000000000000001358 213.0
LYD1_k127_5559483_3 Belongs to the ribF family K11753 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000002698 209.0
LYD1_k127_5559483_4 - - - - 0.0000000000000000000000000000000000000000000000000000004281 200.0
LYD1_k127_5559483_5 Belongs to the Fur family K03711 - - 0.0000000000000000003518 93.0
LYD1_k127_5563275_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.126e-240 761.0
LYD1_k127_5563275_1 signal peptidase-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000193 228.0
LYD1_k127_5563275_2 endonuclease III - - - 0.00000000001734 65.0
LYD1_k127_5576263_0 - - - - 0.00000000000000000000000000000000000000000000001 198.0
LYD1_k127_5583791_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 367.0
LYD1_k127_5583791_1 Glycosyl hydrolase family 30 beta sandwich domain - - - 0.00000000000000000000000000000000001077 153.0
LYD1_k127_5583791_2 PFAM sulfatase - - - 0.0000000000000000000000000000000001718 133.0
LYD1_k127_5584813_0 Chromate K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 523.0
LYD1_k127_5584813_1 Biotin and Thiamin Synthesis associated K03150 - 4.1.99.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000855 361.0
LYD1_k127_5584813_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 349.0
LYD1_k127_5584813_3 Pfam Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002226 242.0
LYD1_k127_5584813_4 ThiS family K03154 - - 0.00000005396 57.0
LYD1_k127_5584813_5 Methionine biosynthesis protein MetW - - - 0.0000001034 55.0
LYD1_k127_5593018_0 COG3119 Arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 453.0
LYD1_k127_5593018_1 PFAM glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 414.0
LYD1_k127_5593018_2 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001318 275.0
LYD1_k127_5638957_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 550.0
LYD1_k127_5638957_1 Fructose-1,6-bisphosphate aldolase, class II K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009915 332.0
LYD1_k127_5638957_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000002793 234.0
LYD1_k127_5638957_3 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000949 144.0
LYD1_k127_5638957_4 TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000001506 63.0
LYD1_k127_564094_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 3.934e-204 653.0
LYD1_k127_564094_1 Prephenate dehydrogenase K00210,K00220,K04517 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046983,GO:0047794,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.3.1.12,1.3.1.43 0.0000000000000000000000000000000000000000000000000004069 196.0
LYD1_k127_564094_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 GO:0001676,GO:0003674,GO:0003824,GO:0003989,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009317,GO:0009329,GO:0009987,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019752,GO:0032787,GO:0032991,GO:0042759,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576,GO:1902494,GO:1990234 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000002047 154.0
LYD1_k127_5670860_0 AP endonuclease family 2 C terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 518.0
LYD1_k127_5670860_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004984 467.0
LYD1_k127_5670860_2 Methane oxygenase PmoA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 365.0
LYD1_k127_5670860_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 336.0
LYD1_k127_5670860_4 Trehalose utilisation - - - 0.00000000000000002039 87.0
LYD1_k127_5670860_5 Domain of Unknown Function (DUF1080) - - - 0.000000001675 71.0
LYD1_k127_56786_0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 469.0
LYD1_k127_5691553_0 FAD dependent oxidoreductase - - - 3.122e-203 641.0
LYD1_k127_5691553_1 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000854 250.0
LYD1_k127_5691553_2 Protein of unknown function (DUF1800) - - - 0.0000000000001772 76.0
LYD1_k127_571160_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 333.0
LYD1_k127_571160_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000004623 190.0
LYD1_k127_571160_2 Right handed beta helix region - - - 0.000000000000000000000000000000000000002351 157.0
LYD1_k127_571160_3 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000253 143.0
LYD1_k127_571160_4 Right handed beta helix region - - - 0.000000000000000000000000000000000003586 145.0
LYD1_k127_5727668_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 331.0
LYD1_k127_5727668_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 GO:0003674,GO:0003824,GO:0004735,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0017144,GO:0018130,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0055129,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000001308 213.0
LYD1_k127_5727668_2 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000141 134.0
LYD1_k127_5727668_3 flavin reductase - - - 0.00000000000000001758 87.0
LYD1_k127_5727668_4 4Fe-4S single cluster domain K05337 - - 0.0000000000002662 72.0
LYD1_k127_5763360_0 COG0210 Superfamily I DNA and RNA K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008602 601.0
LYD1_k127_5763360_1 PFAM glycoside hydrolase, family 10 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 313.0
LYD1_k127_5763360_2 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.0000000000000000000000000000000000000001309 168.0
LYD1_k127_5763360_3 Belongs to the GPI family K01810 - 5.3.1.9 0.000000008116 62.0
LYD1_k127_5763360_4 peptidoglycan binding K03642 - - 0.000007136 58.0
LYD1_k127_5768870_0 GDP-mannose 4,6 dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 352.0
LYD1_k127_5768870_1 PFAM lipopolysaccharide biosynthesis protein K16554 - - 0.00000000000000000000000000000000000000000000001633 194.0
LYD1_k127_5768870_2 PFAM PEGA domain - - - 0.00000000000000000001162 96.0
LYD1_k127_5768870_3 ATPase family associated with various cellular activities (AAA) - - - 0.000000000000000002741 86.0
LYD1_k127_5768870_4 peptidyl-tyrosine sulfation - - - 0.000000005249 70.0
LYD1_k127_57809_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate K03701 - - 0.0 1133.0
LYD1_k127_57809_1 PFAM NADH flavin oxidoreductase NADH oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 492.0
LYD1_k127_57809_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 292.0
LYD1_k127_57809_3 BNR repeat-containing family member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 287.0
LYD1_k127_57809_4 'glutamate synthase K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000001124 287.0
LYD1_k127_57809_5 PFAM KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000003986 100.0
LYD1_k127_5788361_0 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 4.858e-248 772.0
LYD1_k127_5788361_1 PFAM Aminotransferase class I and II - - - 0.000000000000000005249 85.0
LYD1_k127_5801989_0 dihydroxy-acid dehydratase activity K01687,K16786 GO:0003674,GO:0003824,GO:0004160,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.9 2.417e-238 748.0
LYD1_k127_5801989_1 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 289.0
LYD1_k127_5801989_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000003934 243.0
LYD1_k127_5801989_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000003671 172.0
LYD1_k127_5801989_4 - - - - 0.00000000000000000000000000000000000006769 149.0
LYD1_k127_5801989_5 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000002823 133.0
LYD1_k127_5801989_6 RDD family - - - 0.00000000000000000000000009331 114.0
LYD1_k127_5801989_7 Protein of unknown function (DUF433) - - - 0.000000000000000000000001663 106.0
LYD1_k127_5801989_8 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000009745 74.0
LYD1_k127_580665_0 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000001312 237.0
LYD1_k127_580665_1 Ig domain protein group 2 domain protein - - - 0.00000000000000000000000000000000000000000000000000001224 196.0
LYD1_k127_580665_2 Sulfatase - - - 0.00000000002293 71.0
LYD1_k127_5813457_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002181 246.0
LYD1_k127_5840345_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 2.458e-212 675.0
LYD1_k127_5840345_1 nuclease K00590,K01174,K02027 - 2.1.1.113,3.1.31.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 526.0
LYD1_k127_5840345_2 transmembrane transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006902 337.0
LYD1_k127_5840345_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 300.0
LYD1_k127_5840345_4 peptidase S9 prolyl oligopeptidase active site - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000001417 97.0
LYD1_k127_5840345_5 transmembrane transport - - - 0.00000000000000000002596 104.0
LYD1_k127_5840345_7 Effects nucleoid occlusion by binding relatively nonspecifically to DNA and preventing the assembly of the division machinery in the vicinity of the nucleoid, especially under conditions that disturb the cell cycle. It helps to coordinate cell division and chromosome segregation by preventing the formation of the Z ring through the nucleoid, which would cause chromosome breakage K03497 - - 0.00000001682 66.0
LYD1_k127_5850030_0 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000374 459.0
LYD1_k127_5850030_1 typically periplasmic contain C-terminal PDZ domain K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000001109 255.0
LYD1_k127_5850030_2 Diadenylate cyclase - - - 0.000000000000000000000000000000000000000006149 164.0
LYD1_k127_5868625_0 - - - - 0.0000000000359 74.0
LYD1_k127_5875677_0 Type II IV secretion system protein K02454,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003798 480.0
LYD1_k127_5875677_1 type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000003375 245.0
LYD1_k127_5875677_2 sporulation initiation inhibitor protein Soj K03496 - - 0.0000000000000000000000000000000000000000000000000000000000002237 222.0
LYD1_k127_5875677_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000003704 134.0
LYD1_k127_5875677_4 Secretin and TonB N terminus short domain K02666 - - 0.0000000000000000000000000883 123.0
LYD1_k127_5875677_5 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000002145 106.0
LYD1_k127_5875677_6 Belongs to the UPF0102 family K07460 - - 0.000000000000000005547 91.0
LYD1_k127_5875677_7 Diadenylate cyclase - - - 0.0000000000000001203 82.0
LYD1_k127_5875677_8 Prokaryotic N-terminal methylation motif K02456,K02650 - - 0.0000001896 59.0
LYD1_k127_5885773_0 Protein involved in outer membrane biogenesis - - - 0.0000001295 65.0
LYD1_k127_5889672_0 Oligoendopeptidase f K01283 - 3.4.15.1 1.161e-224 709.0
LYD1_k127_5889672_1 oligopeptide transporter - - - 1.973e-195 630.0
LYD1_k127_5889672_2 oligopeptide transport K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 510.0
LYD1_k127_5889672_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008207 358.0
LYD1_k127_5889672_4 Protein of unknown function (DUF2961) - - - 0.00000000000000000000000000001231 122.0
LYD1_k127_5889672_5 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000001588 110.0
LYD1_k127_5915526_0 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008023 407.0
LYD1_k127_5915526_1 PFAM Radical SAM domain protein K06871 - - 0.000000000000000000000000000000000000000007052 160.0
LYD1_k127_5915526_2 general secretion pathway protein K02456,K02679 - - 0.0000001006 63.0
LYD1_k127_5926425_0 geranylgeranyl reductase activity - - - 1.988e-199 658.0
LYD1_k127_5926425_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01077 - 3.1.3.1 0.0000000000000000000339 104.0
LYD1_k127_5926425_2 Prokaryotic N-terminal methylation motif - - - 0.000000000000002111 85.0
LYD1_k127_5928644_0 Beta-lactamase superfamily domain - - - 0.00000000000000000000002426 111.0
LYD1_k127_5928644_1 BNR repeat-like domain K01186 - 3.2.1.18 0.0000000000000001949 90.0
LYD1_k127_5928644_2 Pectate lyase - - - 0.00001842 55.0
LYD1_k127_594059_0 carbohydrate transport K01209 - 3.2.1.55 4.986e-219 702.0
LYD1_k127_594059_1 Belongs to the glycosyl hydrolase 32 family - - - 0.00000000000000000000000008148 118.0
LYD1_k127_594622_0 COG3119 Arylsulfatase A and related enzymes - - - 6.718e-215 678.0
LYD1_k127_594622_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 412.0
LYD1_k127_594622_2 Hypothetical glycosyl hydrolase 6 - - - 0.0000000004463 62.0
LYD1_k127_5995293_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007268 378.0
LYD1_k127_5995293_1 beta-galactosidase K01190 - 3.2.1.23 0.000000000000000000000000000002156 126.0
LYD1_k127_6004780_0 inositol 2-dehydrogenase activity - - - 3.409e-212 667.0
LYD1_k127_6004780_1 and related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 569.0
LYD1_k127_6004780_2 F5/8 type C domain - - - 0.0000000000000000000000000001626 124.0
LYD1_k127_6016968_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 574.0
LYD1_k127_6016968_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009311 316.0
LYD1_k127_6016968_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000007827 252.0
LYD1_k127_6016968_3 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000003844 144.0
LYD1_k127_6016968_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000001753 105.0
LYD1_k127_6024868_0 myo-inosose-2 dehydratase activity K03079 - 5.1.3.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001261 288.0
LYD1_k127_6024868_1 translation initiation factor activity K03496,K09000 GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0009295,GO:0016020,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044424,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000006989 233.0
LYD1_k127_603432_0 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 511.0
LYD1_k127_603432_1 glycogen cell differentiation involved in embryonic placenta development - GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564 - 0.00002723 54.0
LYD1_k127_6046293_0 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 338.0
LYD1_k127_6046293_1 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000001503 177.0
LYD1_k127_6046293_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000002238 175.0
LYD1_k127_6046293_3 PFAM histidine triad (HIT) protein K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000004227 175.0
LYD1_k127_605617_0 zinc D-Ala-D-Ala carboxypeptidase activity K08641 - 3.4.13.22 0.0000000000000000000000000000000000000000000000000000000000000000009573 237.0
LYD1_k127_6069643_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 571.0
LYD1_k127_6069643_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004135 342.0
LYD1_k127_6069643_2 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000001917 231.0
LYD1_k127_6069643_3 peptidase U32 - - - 0.000000000000000000000000000000000005563 139.0
LYD1_k127_6069643_4 - - - - 0.00000000000000000001385 99.0
LYD1_k127_6109741_0 Glycosyl hydrolase, family 20, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 379.0
LYD1_k127_6118895_0 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 326.0
LYD1_k127_6118895_1 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.00000000000000000000000000000000000000003409 166.0
LYD1_k127_6118895_2 Protein of unknown function (DUF456) K09793 - - 0.0000000000000000000001143 104.0
LYD1_k127_6118895_3 - - - - 0.00000000000000002147 85.0
LYD1_k127_6163005_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007476 379.0
LYD1_k127_6163005_1 Glycosyl Transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000003549 242.0
LYD1_k127_6163005_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.00000000000000000000000000000000000000000006149 165.0
LYD1_k127_6163005_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000004289 130.0
LYD1_k127_6163005_4 PAP2 superfamily C-terminal - - - 0.00000000000002492 81.0
LYD1_k127_6163005_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0005538 45.0
LYD1_k127_6183542_0 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 1.115e-255 804.0
LYD1_k127_6183542_1 Periplasmic copper-binding protein (NosD) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 467.0
LYD1_k127_6183542_10 arylsulfatase A - - - 0.000000000000000000000000000000003206 130.0
LYD1_k127_6183542_11 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000006021 73.0
LYD1_k127_6183542_2 dehydrogenases and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 448.0
LYD1_k127_6183542_3 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 406.0
LYD1_k127_6183542_4 FHA domain K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000004243 259.0
LYD1_k127_6183542_5 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002186 248.0
LYD1_k127_6183542_6 dehydrogenases and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000006866 220.0
LYD1_k127_6183542_7 - - - - 0.0000000000000000000000000000000000000000000000000000002442 200.0
LYD1_k127_6183542_8 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.0000000000000000000000000000000000000000000000000000003163 201.0
LYD1_k127_6183542_9 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000001517 159.0
LYD1_k127_6186848_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009138 272.0
LYD1_k127_6186848_1 - - - - 0.0000000000000000000000000000287 135.0
LYD1_k127_6186848_2 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.000000000000000000000004146 106.0
LYD1_k127_6216146_0 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 424.0
LYD1_k127_6216146_1 Alcohol dehydrogenase GroES-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 342.0
LYD1_k127_6216146_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.0000000000000000000000000000000000000000000000000000000000004173 214.0
LYD1_k127_6216146_3 - - - - 0.000000000000000000000000000000000000000000000000000002188 199.0
LYD1_k127_6216146_4 Protein of unknown function (DUF1428) - - - 0.00000000000000000000000000000000000000000000000000009232 188.0
LYD1_k127_6216146_5 Trypsin - - - 0.000000000000000000000000000000000000000004037 159.0
LYD1_k127_6216146_6 Activator of Hsp90 ATPase - - - 0.000000000000000000000001601 117.0
LYD1_k127_6216146_7 YHS domain protein - - - 0.000000000000003283 78.0
LYD1_k127_623102_0 BNR repeat-containing family member - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 416.0
LYD1_k127_623102_1 FAD binding domain K00278,K03388 - 1.4.3.16,1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000212 241.0
LYD1_k127_6246610_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 9.566e-230 746.0
LYD1_k127_6246610_1 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 333.0
LYD1_k127_6246610_2 lipoprotein transporter activity K02003,K05685,K09810 - - 0.0000000000000000000000000000000000000000000000000000000000002433 218.0
LYD1_k127_6246610_3 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000006221 188.0
LYD1_k127_6246610_4 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.000000000000000000000000005622 120.0
LYD1_k127_6246610_5 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000003832 90.0
LYD1_k127_6246610_6 Bacterial extracellular solute-binding protein K10938 - - 0.00000000000000003094 90.0
LYD1_k127_6261172_0 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000004287 197.0
LYD1_k127_6261172_1 Converts the aldose L-fucose into the corresponding ketose L-fuculose - - - 0.00000000000000000000000000000001713 143.0
LYD1_k127_6265978_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 8.545e-196 623.0
LYD1_k127_6265978_1 Glycosyl hydrolase family 2, sugar binding domain protein K05970 - 3.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000001273 233.0
LYD1_k127_6265978_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000003934 177.0
LYD1_k127_6265978_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000001762 176.0
LYD1_k127_6265978_4 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000005155 153.0
LYD1_k127_6265978_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001817 108.0
LYD1_k127_6265978_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000005853 82.0
LYD1_k127_6265978_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000002478 73.0
LYD1_k127_6271461_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1255.0
LYD1_k127_6271461_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 439.0
LYD1_k127_6271461_2 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 303.0
LYD1_k127_6271461_3 PFAM Linocin_M18 bacteriocin protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001415 270.0
LYD1_k127_6271461_4 Desulfoferrodoxin ferrous iron-binding K05919 - 1.15.1.2 0.0000000000000000000000000000000000000000000000001766 180.0
LYD1_k127_6271461_5 Rubrerythrin - - - 0.00000000000000000000000000000000001344 141.0
LYD1_k127_6271461_6 Protein of unknown function (DUF2769) - - - 0.00000000009389 66.0
LYD1_k127_6271656_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008743 545.0
LYD1_k127_6271656_1 Sugar (and other) transporter K08138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 521.0
LYD1_k127_6271656_2 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 525.0
LYD1_k127_6271656_3 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 407.0
LYD1_k127_6271656_4 Branched-chain amino acid transport system / permease component K10440,K17203 - - 0.000000000000000000000000000000000000000000000000000000000199 205.0
LYD1_k127_6271656_5 thioesterase K07107 - - 0.0000000000000000000000000000000923 128.0
LYD1_k127_6271656_6 Protein of unknown function (DUF503) K09764 - - 0.0000000000000000000002663 101.0
LYD1_k127_6317343_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 575.0
LYD1_k127_6317343_1 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 477.0
LYD1_k127_6317343_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 307.0
LYD1_k127_6317343_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000944 167.0
LYD1_k127_6326049_0 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 473.0
LYD1_k127_6326049_1 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 461.0
LYD1_k127_6326049_2 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004065 437.0
LYD1_k127_6326049_3 pyrroloquinoline quinone binding K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000001673 274.0
LYD1_k127_6326049_4 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009646 258.0
LYD1_k127_6326049_5 Domain of Unknown Function (DUF1080) K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000001424 245.0
LYD1_k127_6326049_6 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000002234 155.0
LYD1_k127_6368567_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 416.0
LYD1_k127_6368567_1 Fibronectin type 3 domain - - - 0.0000000000000000001321 103.0
LYD1_k127_6396563_0 Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 434.0
LYD1_k127_6402668_0 SMART Pyrrolo-quinoline quinone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 388.0
LYD1_k127_6402668_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000001461 207.0
LYD1_k127_6459088_0 Putative glutamine amidotransferase - - - 0.0000000000000000000000000006672 132.0
LYD1_k127_6459088_1 Aerotolerance regulator N-terminal - - - 0.000297 54.0
LYD1_k127_6461534_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005062 354.0
LYD1_k127_6461534_1 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K02003,K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001177 246.0
LYD1_k127_6461534_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000001158 217.0
LYD1_k127_6461534_3 Lipoprotein releasing system transmembrane protein K09808 - - 0.0000006825 53.0
LYD1_k127_6461628_0 Trehalose-phosphatase K16055 - 2.4.1.15,3.1.3.12 1.289e-228 730.0
LYD1_k127_6461628_1 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 335.0
LYD1_k127_6461628_2 hydrolase family 20, catalytic K12373 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 305.0
LYD1_k127_6461628_3 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000003631 211.0
LYD1_k127_6478490_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 363.0
LYD1_k127_6478490_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003578 353.0
LYD1_k127_6478490_2 Leucine-rich repeats, outliers - - - 0.00000000000000000000000000000000000000000000000000000001259 207.0
LYD1_k127_6478490_3 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000139 145.0
LYD1_k127_6499016_0 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
LYD1_k127_6499016_1 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 402.0
LYD1_k127_6513771_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 6.97e-202 642.0
LYD1_k127_6513771_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 327.0
LYD1_k127_6513771_2 response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000003721 240.0
LYD1_k127_6513771_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000001689 182.0
LYD1_k127_6513771_4 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000002218 85.0
LYD1_k127_6526573_0 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 439.0
LYD1_k127_6526573_1 DNA-templated transcription, initiation - - - 0.00000000000000000000000000000000000000000001055 168.0
LYD1_k127_6555107_0 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000083 196.0
LYD1_k127_6555107_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000776 188.0
LYD1_k127_6555107_2 ATPase histidine kinase DNA gyrase B HSP90 domain protein K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000003605 192.0
LYD1_k127_6556604_0 amino acid activation for nonribosomal peptide biosynthetic process K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000893 566.0
LYD1_k127_6556604_1 ArgE DapE Acy1 family protein K01438,K01439 - 3.5.1.16,3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 358.0
LYD1_k127_6573015_0 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000001463 128.0
LYD1_k127_6573015_1 - - - - 0.00000005575 64.0
LYD1_k127_6578738_0 Elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000002758 241.0
LYD1_k127_6578738_1 cellulose binding - - - 0.00000000000000000000000002607 117.0
LYD1_k127_6583574_0 alpha-galactosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 479.0
LYD1_k127_6583574_1 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001003 256.0
LYD1_k127_6584619_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000002625 168.0
LYD1_k127_6584619_1 Belongs to the peptidase S1C family - - - 0.000001245 60.0
LYD1_k127_659159_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002915 443.0
LYD1_k127_659159_1 PQQ-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004385 325.0
LYD1_k127_6601457_0 metalloendopeptidase activity K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008735 409.0
LYD1_k127_6601457_1 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002454 252.0
LYD1_k127_6601457_2 Transcription factor zinc-finger K09981 - - 0.000000000000000000000000001286 116.0
LYD1_k127_6601457_3 metal-dependent hydrolase of the TIM-barrel fold K07045 - - 0.0003245 49.0
LYD1_k127_6605684_0 PFAM Mandelate racemase muconate lactonizing enzyme, C-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005279 405.0
LYD1_k127_6605684_1 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000253 251.0
LYD1_k127_6615279_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 563.0
LYD1_k127_6615279_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 334.0
LYD1_k127_6615279_2 Ferritin-like domain K02217 - 1.16.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000006526 244.0
LYD1_k127_6615279_3 Rubrerythrin - - - 0.000000000000000000000000000000000000005895 151.0
LYD1_k127_6615279_4 Psort location Cytoplasmic, score - - - 0.000000000000000000000001855 104.0
LYD1_k127_6635324_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 533.0
LYD1_k127_6635324_1 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 370.0
LYD1_k127_6635324_2 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000192 135.0
LYD1_k127_6642128_0 COG2804 Type II secretory pathway ATPase PulE Tfp pilus assembly pathway ATPase PilB K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 441.0
LYD1_k127_6642128_1 PFAM Type II secretion system protein E K02454,K02652,K12276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 312.0
LYD1_k127_6642128_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000003938 64.0
LYD1_k127_6645172_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000000000000000000000000000000000000000000000001081 225.0
LYD1_k127_6645172_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000008044 109.0
LYD1_k127_6645172_2 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr) K01868 GO:0002161,GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.000002071 59.0
LYD1_k127_6645172_3 helix_turn_helix, Lux Regulon - - - 0.00004623 53.0
LYD1_k127_6646490_0 COG3119 Arylsulfatase A and related enzymes K01138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 541.0
LYD1_k127_6646490_1 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 534.0
LYD1_k127_6646490_2 COG3119 Arylsulfatase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008936 507.0
LYD1_k127_6646490_3 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005674 268.0
LYD1_k127_6646490_4 Protein of unknown function (DUF952) K00799,K01560,K09705,K21420 - 2.3.2.29,2.5.1.18,3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000559 232.0
LYD1_k127_6646490_5 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000002585 202.0
LYD1_k127_6646490_6 Trehalose utilisation K09992 - - 0.0000000000000000000000000000000000002291 158.0
LYD1_k127_6646490_7 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000106 141.0
LYD1_k127_6646490_8 - - - - 0.00000000003097 72.0
LYD1_k127_6654840_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000001057 224.0
LYD1_k127_6654840_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000001557 124.0
LYD1_k127_6656023_0 FAD dependent oxidoreductase K15736 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007646 274.0
LYD1_k127_6656023_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000000000000000000000001249 198.0
LYD1_k127_6656023_2 - - - - 0.00000000000000000000000000000000000000000008943 167.0
LYD1_k127_6658246_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 465.0
LYD1_k127_6658246_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000939 231.0
LYD1_k127_6658246_2 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000001898 210.0
LYD1_k127_6658246_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000000000000000059 138.0
LYD1_k127_6658246_4 Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in the first half-reaction K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.00000000000000000000000000000001205 132.0
LYD1_k127_6658246_5 - - - - 0.000000003842 61.0
LYD1_k127_666981_0 dehydrogenases and related proteins - - - 8.264e-223 700.0
LYD1_k127_666981_1 Mandelate racemase muconate lactonizing enzyme K01683,K01684 GO:0000287,GO:0003674,GO:0005488,GO:0043167,GO:0043169,GO:0046872 4.2.1.5,4.2.1.6 0.000000000000000000000000000000000000000001095 158.0
LYD1_k127_666981_2 - - - - 0.000001455 56.0
LYD1_k127_6671064_0 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 455.0
LYD1_k127_6671064_1 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006687 401.0
LYD1_k127_6671064_10 Pkd domain containing protein - - - 0.000000000000001205 91.0
LYD1_k127_6671064_11 granule-associated protein - - - 0.00000009437 57.0
LYD1_k127_6671064_2 ABC1 family K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004568 408.0
LYD1_k127_6671064_3 beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 319.0
LYD1_k127_6671064_4 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 299.0
LYD1_k127_6671064_5 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002071 264.0
LYD1_k127_6671064_6 small multidrug export protein - - - 0.0000000000000000000000000000000000000000000000000000000005553 209.0
LYD1_k127_6671064_7 Trimethylamine methyltransferase (MTTB) - - - 0.000000000000000000000000005191 126.0
LYD1_k127_6671064_8 - - - - 0.0000000000000000000000664 102.0
LYD1_k127_6671064_9 chlorophyll binding - - - 0.000000000000000000005935 109.0
LYD1_k127_6672024_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005911 578.0
LYD1_k127_6672024_1 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000238 290.0
LYD1_k127_6672024_2 Periplasmic binding protein domain K02058 - - 0.0000000000000000000000000000000000000000000000000001708 199.0
LYD1_k127_6672024_4 peptidase activity, acting on L-amino acid peptides - - - 0.0000000000000000000000000002607 130.0
LYD1_k127_6672024_5 cellulose binding - - - 0.0000000000000000000002246 113.0
LYD1_k127_6678630_0 Belongs to the glycosyl hydrolase 32 family K12308 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 458.0
LYD1_k127_6678630_1 Protein of unknown function (DUF434) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002299 266.0
LYD1_k127_6678630_2 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000004389 132.0
LYD1_k127_6679762_0 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000123 120.0
LYD1_k127_6679762_1 Peptidase S24-like - - - 0.0000000000002251 78.0
LYD1_k127_6683009_0 PFAM FAD linked oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 369.0
LYD1_k127_6695031_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.818e-272 860.0
LYD1_k127_6695031_1 TIGRFAM cysteine K12339 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008552 453.0
LYD1_k127_6695031_2 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 390.0
LYD1_k127_6695031_3 Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate K03473 - 1.1.1.290 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 319.0
LYD1_k127_6695031_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000007083 246.0
LYD1_k127_6695031_5 Uncharacterised protein family (UPF0158) - - - 0.000000000000000000000000000000000000000005954 159.0
LYD1_k127_6695031_6 NUDIX domain - - - 0.000000000000000000000000000000000000000272 155.0
LYD1_k127_6695031_7 TIGRFAM glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 - 1.1.5.3 0.00000000000000000000000000000000000182 144.0
LYD1_k127_6720668_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 2.47e-303 968.0
LYD1_k127_6720668_1 - - - - 0.00000000000000000000000000000000000000000000000000002208 198.0
LYD1_k127_6720668_2 general secretion pathway protein K02456,K02679 - - 0.0000000000000000000000000000000000000000002242 171.0
LYD1_k127_6720668_3 - - - - 0.0000000000000000000000000000000004633 137.0
LYD1_k127_6720668_4 RNA recognition motif - - - 0.000000000000000000106 96.0
LYD1_k127_6720668_5 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000004655 54.0
LYD1_k127_6724913_0 Transglutaminase/protease-like homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 530.0
LYD1_k127_6724913_1 ACT domain - - - 0.000000002175 61.0
LYD1_k127_6724913_2 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K04749 - - 0.0000001742 59.0
LYD1_k127_6736817_0 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 370.0
LYD1_k127_6736817_1 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 356.0
LYD1_k127_6736817_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000731 304.0
LYD1_k127_6736817_3 Pectate lyase superfamily protein - - - 0.000000000000000000000000000000000000000000000000000003698 200.0
LYD1_k127_6736817_4 Belongs to the carbohydrate kinase PfkB family. LacC subfamily K00882,K16370 - 2.7.1.11,2.7.1.56 0.00000000000000000000000000000007357 136.0
LYD1_k127_6736817_5 Putative addiction module component - - - 0.0000000000000000000003197 97.0
LYD1_k127_6736817_6 Plasmid stabilization system - - - 0.00000000000001752 76.0
LYD1_k127_6736817_7 Calcineurin-like phosphoesterase - - - 0.00000000000008966 73.0
LYD1_k127_6736817_8 Plasmid stabilization system - - - 0.00000002759 59.0
LYD1_k127_6770306_0 enzyme activase - - - 0.0 1130.0
LYD1_k127_6770306_1 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000001905 193.0
LYD1_k127_6770306_2 thioesterase - - - 0.00000000000000000000000000000000006146 139.0
LYD1_k127_6786087_0 NAD synthase K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 446.0
LYD1_k127_6804580_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000005664 85.0
LYD1_k127_6805341_0 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000003133 219.0
LYD1_k127_6805341_1 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000009576 223.0
LYD1_k127_6805341_2 Domain of unknown function (DUF4416) - - - 0.0000000000000000000000000000000000003812 147.0
LYD1_k127_6805341_3 PFAM O-Antigen - - - 0.0000000000009406 81.0
LYD1_k127_6817534_0 PFAM Heparinase II III family protein - - - 9.742e-201 651.0
LYD1_k127_6817534_1 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 333.0
LYD1_k127_6817534_2 Memo-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 328.0
LYD1_k127_6817534_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000007532 231.0
LYD1_k127_6817534_4 FMN_bind - - - 0.00000000000000000002632 108.0
LYD1_k127_704083_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007755 327.0
LYD1_k127_704083_1 FMN binding K03112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 320.0
LYD1_k127_712879_0 PFAM Type II secretion system protein E K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 503.0
LYD1_k127_712879_1 General secretion pathway protein F K02455,K02653 - - 0.0000000000000000000000000000000000000000000000002268 188.0
LYD1_k127_72927_0 COG1077 Actin-like ATPase involved in cell morphogenesis K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000002509 238.0
LYD1_k127_735755_0 Belongs to the NqrDE RnfAE family K03613 - - 0.000000000000000000000000000000000000000000000000000000000000292 217.0
LYD1_k127_735755_1 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000009513 201.0
LYD1_k127_735755_2 NQR2, RnfD, RnfE family K03614 - - 0.0000000000000000000000000000000000000000000000000005012 191.0
LYD1_k127_735755_3 TIGRFAM electron transport complex, RnfABCDGE type, B subunit K03616 - - 0.00000000000000000001153 99.0
LYD1_k127_735755_4 Part of a membrane complex involved in electron transport K03612 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000474 77.0
LYD1_k127_742786_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 2.355e-217 687.0
LYD1_k127_742786_1 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000009909 224.0
LYD1_k127_75768_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 5.029e-219 711.0
LYD1_k127_75768_1 PFAM Radical SAM - - - 1.563e-206 653.0
LYD1_k127_75768_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002615 281.0
LYD1_k127_75768_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004677 243.0
LYD1_k127_75768_4 - - - - 0.00000000000000000000000000000000000000000001471 167.0
LYD1_k127_761727_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 0.0 1034.0
LYD1_k127_761727_1 PFAM Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 8.845e-292 904.0
LYD1_k127_761727_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 351.0
LYD1_k127_761727_3 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007606 347.0
LYD1_k127_761727_4 2 iron, 2 sulfur cluster binding K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000003322 189.0
LYD1_k127_765570_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 601.0
LYD1_k127_765570_1 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 385.0
LYD1_k127_765570_2 Serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544 355.0
LYD1_k127_765570_3 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 351.0
LYD1_k127_765570_4 Transcriptional regulator - - - 0.00000000000000000000000000000000000004411 147.0
LYD1_k127_765570_5 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.0000001892 52.0
LYD1_k127_766426_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000002564 128.0
LYD1_k127_766426_1 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000004862 117.0
LYD1_k127_772823_0 BNR repeat-like domain - - - 1.462e-220 725.0
LYD1_k127_772823_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 419.0
LYD1_k127_772823_10 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.0000000002271 70.0
LYD1_k127_772823_11 Glycosyl hydrolase-like 10 - - - 0.000000004207 70.0
LYD1_k127_772823_12 - - - - 0.0004873 46.0
LYD1_k127_772823_2 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000002343 244.0
LYD1_k127_772823_3 Histidine kinase - - - 0.000000000000000000000000000000000000000001166 169.0
LYD1_k127_772823_4 nucleotidyltransferase activity - - - 0.0000000000000000000000000011 115.0
LYD1_k127_772823_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000001182 122.0
LYD1_k127_772823_6 protein deglycation K05520 - 3.5.1.124 0.000000000000000000000001354 108.0
LYD1_k127_772823_7 DNA-templated transcription, initiation K03088 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000144 90.0
LYD1_k127_772823_8 HEPN domain - - - 0.000000000000001022 84.0
LYD1_k127_772823_9 general secretion pathway protein K02456,K02679 - - 0.000000000000008026 84.0
LYD1_k127_793763_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 482.0
LYD1_k127_793763_1 acid phosphatase activity K03651 - 3.1.4.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000381 280.0
LYD1_k127_793763_2 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000002049 252.0
LYD1_k127_793763_3 Sodium:solute symporter family K03307 - - 0.00000000000000000000000002247 113.0
LYD1_k127_810543_0 TIGRFAM SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002407 240.0
LYD1_k127_810543_1 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000001109 129.0
LYD1_k127_810543_2 ATPases associated with a variety of cellular activities - - - 0.0000000000000003284 91.0
LYD1_k127_810543_3 Belongs to the ParB family K03497 - - 0.00000003048 61.0
LYD1_k127_824774_0 Dehydrogenase K00248,K00249,K20035 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016627,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0052890,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.3.8.1,1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007643 505.0
LYD1_k127_824774_1 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 340.0
LYD1_k127_824774_2 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016020,GO:0016491,GO:0022900,GO:0030312,GO:0040007,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 301.0
LYD1_k127_824774_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000004146 274.0
LYD1_k127_824774_4 NAD(P)H dehydrogenase (quinone) activity - - - 0.000000000000000000000000000000000000000000000000000000000000000005078 230.0
LYD1_k127_824774_5 Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000181 170.0
LYD1_k127_824774_6 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000004018 160.0
LYD1_k127_824774_7 Protein of unknown function DUF86 - - - 0.00000000000000000000000000000000001721 138.0
LYD1_k127_824774_8 Nucleotidyltransferase domain K07075 - - 0.0000000000000000003326 90.0
LYD1_k127_824774_9 general secretion pathway protein K02456,K02679 - - 0.000000002072 68.0
LYD1_k127_827708_0 PFAM Oxidoreductase family, NAD-binding Rossmann fold - - - 6.873e-215 677.0
LYD1_k127_827708_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07291 - 2.7.8.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 287.0
LYD1_k127_827708_2 Pectate lyase - - - 0.000000001336 69.0
LYD1_k127_844933_0 pfkB family carbohydrate kinase K00874 - 2.7.1.45 8.989e-195 615.0
LYD1_k127_844933_1 PFAM FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 485.0
LYD1_k127_844933_2 Alanine dehydrogenase/PNT, C-terminal domain K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 385.0
LYD1_k127_844933_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 358.0
LYD1_k127_844933_4 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.00000000000000000000000000006383 118.0
LYD1_k127_844933_5 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000006809 69.0
LYD1_k127_85047_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 559.0
LYD1_k127_85047_1 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008012 319.0
LYD1_k127_85047_2 COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT K02669 - - 0.0000000000000000000000003907 106.0
LYD1_k127_857835_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 355.0
LYD1_k127_857835_1 GHKL domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007655 312.0
LYD1_k127_857835_2 Domain of Unknown Function (DUF1080) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001601 267.0
LYD1_k127_857835_3 Methane oxygenase PmoA - - - 0.000000000000000000000000000000000000000000000000000000000000000000009078 251.0
LYD1_k127_857835_4 WYL domain K13572 - - 0.0000000000000000000000000000000000000000000000000000000000006543 222.0
LYD1_k127_879698_0 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000001216 216.0
LYD1_k127_879698_1 Psort location Cytoplasmic, score K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000004835 209.0
LYD1_k127_879698_2 - - - - 0.0000000000000000006842 92.0
LYD1_k127_879698_3 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000002799 96.0
LYD1_k127_879698_4 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000007216 68.0
LYD1_k127_886847_0 Membrane dipeptidase (Peptidase family M19) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 419.0
LYD1_k127_886847_1 dipeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 312.0
LYD1_k127_886847_2 UbiA prenyltransferase family K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000002135 189.0
LYD1_k127_893340_0 beta-galactosidase activity - - - 0.0000003781 61.0
LYD1_k127_921927_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 394.0
LYD1_k127_921927_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000001732 83.0
LYD1_k127_922886_0 aerobic electron transport chain K00425 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016679,GO:0016682,GO:0019646,GO:0020037,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0070069,GO:0071944,GO:0097159,GO:1901363 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 499.0
LYD1_k127_922886_1 Cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000005219 199.0
LYD1_k127_925917_0 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 514.0
LYD1_k127_925917_1 associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 391.0
LYD1_k127_925917_2 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 384.0
LYD1_k127_925917_3 PFAM oxidoreductase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 334.0
LYD1_k127_925917_4 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000004966 222.0
LYD1_k127_925917_5 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000007843 167.0
LYD1_k127_925917_6 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.00000000000000000000000000000001127 145.0
LYD1_k127_942189_0 Isocitrate isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000597 534.0
LYD1_k127_942189_1 TIGRFAM lipopolysaccharide heptosyltransferase II K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 422.0
LYD1_k127_942189_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000005227 242.0
LYD1_k127_942189_3 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000006313 195.0
LYD1_k127_942189_4 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000001958 194.0
LYD1_k127_942189_5 glucan 1,4-alpha-glucosidase activity - - - 0.00000000000000000000000000000000000000000000000001805 202.0
LYD1_k127_942189_6 Polynucleotide kinase 3 phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000002191 175.0
LYD1_k127_965938_0 arylsulfatase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005564 416.0
LYD1_k127_965938_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000005005 244.0
LYD1_k127_965938_2 COG3119 Arylsulfatase A - - - 0.00000000000000000000000000000000000000000000000000000003608 203.0
LYD1_k127_969831_0 Membrane protein, UPF0126 and UPF0126 domain-containing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003435 270.0
LYD1_k127_969831_1 Protein of unknown function (DUF1524) - - - 0.000000000000000000000000000000000816 135.0
LYD1_k127_969831_2 - - - - 0.0000000000000000005891 92.0
LYD1_k127_969831_3 Protein of unknown function (DUF1524) - - - 0.0000000000000729 75.0
LYD1_k127_969831_4 general secretion pathway protein K02456 - - 0.0000000000002615 80.0
LYD1_k127_969831_5 Conserved protein K09779 - - 0.000000003029 62.0
LYD1_k127_983606_0 Domain of unknown function (DUF5107) - - - 3.764e-306 974.0
LYD1_k127_983606_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 392.0
LYD1_k127_983606_2 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 306.0
LYD1_k127_983606_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000001986 258.0
LYD1_k127_983606_4 Parallel beta-helix repeats - - - 0.000000000000000000000000000001507 142.0
LYD1_k127_983606_5 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000003999 123.0
LYD1_k127_983606_6 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000003609 85.0
LYD1_k127_983606_7 Fibronectin type 3 domain - - - 0.00003263 58.0