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Overview

ID MAG02034
Name LYD1_bin.18
Sample SMP0052
Taxonomy
Kingdom Bacteria
Phylum Myxococcota
Class Polyangia
Order Fen-1088
Family Fen-1088
Genus Fen-1118
Species
Assembly information
Completeness (%) 82.94
Contamination (%) 3.35
GC content (%) 68.0
N50 (bp) 7,172
Genome size (bp) 5,635,979

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes4127

Gene name Description KEGG GOs EC E-value Score Sequence
LYD1_k127_1021317_0 metal-dependent phosphohydrolase HD region - - - 3.149e-215 687.0
LYD1_k127_1021317_1 PIN domain K07175 - - 3.259e-203 643.0
LYD1_k127_1021317_10 feruloyl esterase activity - GO:0000272,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0016052,GO:0016787,GO:0016788,GO:0030600,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0045491,GO:0045493,GO:0052689,GO:0071554,GO:0071704,GO:1901575 - 0.0000000000000000000000000000000000000000000000000001559 198.0
LYD1_k127_1021317_11 Predicted permease - - - 0.000000000000000000000000000001279 138.0
LYD1_k127_1021317_12 Cupin - - - 0.00000000000000000000000001353 113.0
LYD1_k127_1021317_13 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K14161 - - 0.000000000000000000001141 109.0
LYD1_k127_1021317_14 recA bacterial DNA recombination protein - - - 0.000000000000000000009139 100.0
LYD1_k127_1021317_2 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family K08137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 599.0
LYD1_k127_1021317_3 SMART Elongator protein 3 MiaB NifB K04034 - 1.21.98.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 594.0
LYD1_k127_1021317_4 type IV pilus assembly PilZ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 514.0
LYD1_k127_1021317_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 456.0
LYD1_k127_1021317_6 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005943 427.0
LYD1_k127_1021317_7 carboxylic ester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007067 319.0
LYD1_k127_1021317_8 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 305.0
LYD1_k127_1021317_9 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000001278 250.0
LYD1_k127_102256_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 342.0
LYD1_k127_102256_1 ATPase (AAA superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000122 239.0
LYD1_k127_102256_2 type IV pilus assembly PilZ - - - 0.000000000000000000000000000000000000000000000000000000000000003715 227.0
LYD1_k127_102256_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000005274 78.0
LYD1_k127_102256_4 Porin-like glycoporin RafY - - - 0.000007953 60.0
LYD1_k127_102256_5 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0007176 49.0
LYD1_k127_1026325_0 Transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006195 448.0
LYD1_k127_1026325_1 Peptidase dimerisation domain K01439 - 3.5.1.18 0.00000000000000000000000000000000000000676 157.0
LYD1_k127_1029086_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000701 199.0
LYD1_k127_1029086_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000009115 76.0
LYD1_k127_1029086_2 Belongs to the peptidase S8 family - - - 0.0004613 51.0
LYD1_k127_1029086_3 cell-matrix adhesion K02599 - - 0.0009666 51.0
LYD1_k127_1041337_0 major facilitator superfamily K08191 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 351.0
LYD1_k127_1041337_1 depolymerase - - - 0.0000000000000000000000000000001422 138.0
LYD1_k127_1041951_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 347.0
LYD1_k127_1041951_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000000000000000000000000000000000000000000000212 222.0
LYD1_k127_1041951_2 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000000000000000000003073 222.0
LYD1_k127_1041951_3 PFAM Rieske 2Fe-2S K02636 - 1.10.9.1 0.0000000000003345 79.0
LYD1_k127_1041951_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000004356 61.0
LYD1_k127_1041951_5 Cytochrome c - - - 0.0000068 53.0
LYD1_k127_105166_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 490.0
LYD1_k127_105166_1 Asp/Glu/Hydantoin racemase K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007429 403.0
LYD1_k127_105166_2 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000003027 167.0
LYD1_k127_105166_3 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000001073 94.0
LYD1_k127_1059234_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 2.895e-199 629.0
LYD1_k127_1059234_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000822 462.0
LYD1_k127_1059234_2 - - - - 0.0000000001522 72.0
LYD1_k127_1059234_3 PFAM Planctomycete cytochrome C - - - 0.0003983 51.0
LYD1_k127_1074762_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 604.0
LYD1_k127_1075857_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 2.098e-209 682.0
LYD1_k127_1075857_1 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 387.0
LYD1_k127_1075857_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003299 269.0
LYD1_k127_1103730_0 Sulfate adenylyltransferase K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 389.0
LYD1_k127_1103730_1 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000005644 205.0
LYD1_k127_1103730_2 - - - - 0.000000000000000004718 90.0
LYD1_k127_111384_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000001083 248.0
LYD1_k127_111384_1 - - - - 0.000000002792 70.0
LYD1_k127_111384_2 Transposase domain (DUF772) K07487 - - 0.0000002848 56.0
LYD1_k127_1114975_0 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 419.0
LYD1_k127_1114975_1 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000003885 216.0
LYD1_k127_1114975_2 Rhomboid family - - - 0.000000000000000000000000000000000003382 145.0
LYD1_k127_1114975_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000343 136.0
LYD1_k127_1114975_4 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000001606 104.0
LYD1_k127_1114975_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000172 111.0
LYD1_k127_1116409_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 437.0
LYD1_k127_1116409_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 427.0
LYD1_k127_1116409_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 365.0
LYD1_k127_1116409_3 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 332.0
LYD1_k127_1116409_4 Putative TM nitroreductase - - - 0.0000000000000000000000000000000000000000000000002796 183.0
LYD1_k127_1116409_5 VIT family - - - 0.000000000000000000000000000000000000000000000001072 191.0
LYD1_k127_1116409_6 cellulose binding - - - 0.00000000000001811 88.0
LYD1_k127_1116409_7 TPR repeat - - - 0.0000000000000305 83.0
LYD1_k127_1116409_8 Cytochrome C assembly protein - - - 0.0000000002627 70.0
LYD1_k127_1119227_0 protein conserved in bacteria K11891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 432.0
LYD1_k127_1119227_1 Type VI secretion system protein DotU K11892 - - 0.00000000000000003675 85.0
LYD1_k127_1122261_0 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005274 456.0
LYD1_k127_112624_0 Aldo/keto reductase family K19265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 509.0
LYD1_k127_112624_1 Domain of unknown function (DUF3520) K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 359.0
LYD1_k127_112624_2 Nucleotidyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003726 277.0
LYD1_k127_1129587_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 1.126e-223 701.0
LYD1_k127_1129587_1 BNR repeat-containing family member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008915 332.0
LYD1_k127_1130866_0 PFAM Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000000000000003538 138.0
LYD1_k127_1130866_1 Helix-turn-helix domain - - - 0.0000000000000000000000001207 109.0
LYD1_k127_1140202_0 General secretory system II protein E domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 564.0
LYD1_k127_1140202_1 Signal transducing histidine kinase, homodimeric domain K02487,K03407,K06596 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001279 296.0
LYD1_k127_1140202_2 response regulator K02658 - - 0.0000000000000000000000000000000001934 147.0
LYD1_k127_1140202_3 Chemotaxis sensory transducer K03406 - - 0.00000000000000000003583 102.0
LYD1_k127_1140202_4 Tetratricopeptide repeat - - - 0.000000000369 67.0
LYD1_k127_1140202_5 Positive regulator of CheA protein activity CheW K03408 - - 0.0001343 50.0
LYD1_k127_1141560_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005641 516.0
LYD1_k127_1141560_1 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 336.0
LYD1_k127_1141560_2 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 336.0
LYD1_k127_1141560_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000006895 121.0
LYD1_k127_114287_0 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 345.0
LYD1_k127_114287_1 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000002251 224.0
LYD1_k127_114287_2 MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000002157 215.0
LYD1_k127_114287_3 Biopolymer transport protein ExbD/TolR K03560 - - 0.0000000000000000000000000000000000005045 143.0
LYD1_k127_114287_4 Rhomboid family K19225 - 3.4.21.105 0.00000002017 64.0
LYD1_k127_1152390_0 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 402.0
LYD1_k127_1160932_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 476.0
LYD1_k127_1160932_1 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.000000000000000000002852 99.0
LYD1_k127_116469_0 radical SAM domain protein K06139 - - 0.00000000000000000000000000001839 122.0
LYD1_k127_116469_1 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000001525 123.0
LYD1_k127_116469_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000001671 80.0
LYD1_k127_116469_3 calcium- and calmodulin-responsive adenylate cyclase activity K01406,K20276 - 3.4.24.40 0.00000002149 66.0
LYD1_k127_1171206_0 Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA K21782 - 1.3.8.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009458 479.0
LYD1_k127_1171206_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 404.0
LYD1_k127_1171206_2 Non-ribosomal peptide synthetase modules and related proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 407.0
LYD1_k127_1171206_3 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001001 276.0
LYD1_k127_1171206_4 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.0000000000000007925 78.0
LYD1_k127_117343_0 Iron hydrogenase small subunit K00123,K00336,K18332 - 1.12.1.3,1.17.1.9,1.6.5.3 3.962e-233 734.0
LYD1_k127_117343_1 Pyridine nucleotide-disulphide oxidoreductase K00335 - 1.6.5.3 3.096e-225 724.0
LYD1_k127_117343_2 Putative Fe-S cluster K02482 - 2.7.13.3 8.115e-201 646.0
LYD1_k127_117343_3 Biotin and Thiamin Synthesis associated domain K03150 - 4.1.99.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 569.0
LYD1_k127_117343_4 protein histidine kinase activity K02484,K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 333.0
LYD1_k127_117343_5 response regulator, receiver - - - 0.0000000000000000000000005137 119.0
LYD1_k127_1210054_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 450.0
LYD1_k127_1210054_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 401.0
LYD1_k127_1210054_2 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000004101 234.0
LYD1_k127_1210054_3 Protein of unknown function (DUF2723) - - - 0.0000000000000000000000000000000000000000000000000000000000001051 239.0
LYD1_k127_1210054_4 lipid A biosynthetic process K00973,K02414,K21449 - 2.7.7.24 0.0000000000000000000000000000000000000008915 164.0
LYD1_k127_1210054_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000001188 154.0
LYD1_k127_1210054_6 - - - - 0.0000000000000000000000000000000000001406 157.0
LYD1_k127_1210054_7 ankyrin repeats K06867 - - 0.0000000000000000000000001386 114.0
LYD1_k127_1210054_8 Stringent starvation protein B K03600 - - 0.0000000000000000000002233 104.0
LYD1_k127_1213761_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 333.0
LYD1_k127_1213761_1 COG1233 Phytoene dehydrogenase and related - - - 0.0000000000000000000000000000000000000000000000000216 201.0
LYD1_k127_1213761_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000003714 148.0
LYD1_k127_1213761_4 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000001126 87.0
LYD1_k127_1213761_5 Trm112p-like protein K09791 - - 0.00000000001094 67.0
LYD1_k127_1218555_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006520,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016884,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.5.3 0.0 1148.0
LYD1_k127_1218555_1 Type III restriction K01153 - 3.1.21.3 0.000000000000000000000000000000000000000000000000000000000000000000000002696 255.0
LYD1_k127_1218555_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000000000002779 130.0
LYD1_k127_1219676_0 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 529.0
LYD1_k127_1219676_1 peptidoglycan biosynthetic process K07121 - - 0.0000000000000000000000000000000000000000000000000000001405 217.0
LYD1_k127_1219676_2 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.0000000000000000000007231 108.0
LYD1_k127_1219676_3 - - - - 0.0000000000006429 78.0
LYD1_k127_1224822_0 FAD linked oxidase domain protein - - - 0.0 1150.0
LYD1_k127_1224822_1 FHA domain - - - 0.00000000007852 70.0
LYD1_k127_1234337_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005905 389.0
LYD1_k127_1234337_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 376.0
LYD1_k127_1234337_2 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000002472 126.0
LYD1_k127_1234337_3 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000004146 117.0
LYD1_k127_1245150_0 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005721 503.0
LYD1_k127_1245150_1 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000006414 263.0
LYD1_k127_1245150_2 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000004203 127.0
LYD1_k127_1245150_3 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000001392 102.0
LYD1_k127_1245150_4 TPR repeat - - - 0.000000002558 68.0
LYD1_k127_1247621_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 523.0
LYD1_k127_1247621_1 protein conserved in archaea - - - 0.0000000004067 73.0
LYD1_k127_1253786_0 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 434.0
LYD1_k127_1253786_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002861 291.0
LYD1_k127_1253786_2 glyoxalase III activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002081 261.0
LYD1_k127_1253786_3 Pyridine nucleotide-disulphide oxidoreductase K00362 - 1.7.1.15 0.000000000000000000000000000000000000000000000004889 185.0
LYD1_k127_1253786_4 Usher syndrome 2A (autosomal recessive, mild) K05635,K19636 GO:0001654,GO:0001894,GO:0001895,GO:0001917,GO:0002139,GO:0002141,GO:0002142,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0007275,GO:0007399,GO:0007423,GO:0007600,GO:0007605,GO:0008092,GO:0008104,GO:0008150,GO:0008544,GO:0009888,GO:0009913,GO:0009987,GO:0015630,GO:0016020,GO:0016324,GO:0017022,GO:0022008,GO:0030154,GO:0030182,GO:0030855,GO:0031012,GO:0031252,GO:0031253,GO:0031256,GO:0032391,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032589,GO:0032991,GO:0033036,GO:0035315,GO:0035869,GO:0036064,GO:0042490,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045177,GO:0045184,GO:0045202,GO:0045494,GO:0045595,GO:0045596,GO:0046983,GO:0048496,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050953,GO:0050954,GO:0051093,GO:0051179,GO:0051234,GO:0060041,GO:0060113,GO:0060171,GO:0060249,GO:0060429,GO:0062023,GO:0065007,GO:0065008,GO:0071944,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098858,GO:0098862,GO:0120025,GO:0120038,GO:1990075,GO:1990696 - 0.0002408 52.0
LYD1_k127_1277437_0 transport system, permease and ATPase K02471 - - 3.649e-201 638.0
LYD1_k127_1277437_1 Phospholipase D Active site motif K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 367.0
LYD1_k127_1277437_2 TIGRFAM alpha-glucan - - - 0.00000000000000000000001325 103.0
LYD1_k127_1277437_3 - - - - 0.000004913 56.0
LYD1_k127_1277437_4 - - - - 0.00005869 48.0
LYD1_k127_1285232_0 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.0000000000000000000000000000000000000000000000000002878 196.0
LYD1_k127_1285232_1 Nucleotidyl transferase - - - 0.000000000000000000000000000000000007244 150.0
LYD1_k127_1285232_2 PFAM Rhomboid family protein - - - 0.000000000000000000000000001388 124.0
LYD1_k127_1287320_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.696e-205 653.0
LYD1_k127_1287320_1 Sulfate adenylyltransferase K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007704 528.0
LYD1_k127_1287320_10 long-chain fatty acid transporting porin activity K06076 - - 0.000000000000000002301 99.0
LYD1_k127_1287320_2 Transketolase, pyrimidine binding domain K00162,K00167 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 466.0
LYD1_k127_1287320_3 acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 364.0
LYD1_k127_1287320_4 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 357.0
LYD1_k127_1287320_5 involved in fatty acid biosynthesis. catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl- acp. kas III catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. possesses both acetoacetyl-acp synthase and acetyl transacylase activities catalytic activity acyl- acyl-carrier protein malonyl- acyl-carrier protein 3-oxoacyl- acyl-carrier protein CO2 acyl-carrier protein K00648,K21378 - 2.3.1.180,2.3.1.194 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 299.0
LYD1_k127_1287320_6 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001649 247.0
LYD1_k127_1287320_7 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000000008811 213.0
LYD1_k127_1287320_8 - - - - 0.000000000000000000000000000000000000000000000000000000009816 218.0
LYD1_k127_1287320_9 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000003809 165.0
LYD1_k127_1291298_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 381.0
LYD1_k127_1291298_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000001715 232.0
LYD1_k127_1291298_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000003915 205.0
LYD1_k127_1291298_3 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.000000000000000000000000000000000111 143.0
LYD1_k127_1291298_4 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000001184 132.0
LYD1_k127_1291298_6 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00009619 55.0
LYD1_k127_1294483_0 Insulinase (Peptidase family M16) K07263 - - 4.693e-208 679.0
LYD1_k127_1294483_1 glutamine synthetase K01915 - 6.3.1.2 4.698e-195 619.0
LYD1_k127_1294483_10 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000005552 184.0
LYD1_k127_1294483_11 - - - - 0.0000000000000000000000000000000000000000001458 169.0
LYD1_k127_1294483_12 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000008156 155.0
LYD1_k127_1294483_13 zinc ion binding K00859,K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 2.7.1.24 0.00000000007634 64.0
LYD1_k127_1294483_14 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000001495 69.0
LYD1_k127_1294483_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 635.0
LYD1_k127_1294483_3 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 362.0
LYD1_k127_1294483_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 368.0
LYD1_k127_1294483_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 351.0
LYD1_k127_1294483_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 289.0
LYD1_k127_1294483_7 Belongs to the phosphatidylserine decarboxylase family K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000003292 239.0
LYD1_k127_1294483_8 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.00000000000000000000000000000000000000000000000000000000000128 219.0
LYD1_k127_1294483_9 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000003165 181.0
LYD1_k127_1297701_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 329.0
LYD1_k127_1297931_0 depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 354.0
LYD1_k127_1297931_1 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000005675 144.0
LYD1_k127_1297931_2 HAD superfamily K07025 - - 0.0000000000000000000000000000000004365 140.0
LYD1_k127_130589_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 521.0
LYD1_k127_130589_1 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 463.0
LYD1_k127_130589_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 386.0
LYD1_k127_1308832_0 oxidoreductase activity K07114 - - 0.0000000000000000000000007926 119.0
LYD1_k127_1308832_1 Lipoprotein K05811 - - 0.000000000000000004662 95.0
LYD1_k127_1308832_2 serine-type endopeptidase activity - - - 0.0000000000003162 82.0
LYD1_k127_1323948_0 ABC1 family K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 590.0
LYD1_k127_1323948_1 Belongs to the UPF0337 (CsbD) family - - - 0.00001274 51.0
LYD1_k127_1326194_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009186 328.0
LYD1_k127_1327810_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.0 1057.0
LYD1_k127_1328793_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 404.0
LYD1_k127_1328793_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000002905 201.0
LYD1_k127_1331211_0 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000001877 267.0
LYD1_k127_135831_0 - - - - 0.000000000000000000000000000000000002804 139.0
LYD1_k127_135831_1 cellulose binding - - - 0.00000000000000000000000003946 123.0
LYD1_k127_135831_2 - - - - 0.0000002931 52.0
LYD1_k127_1366180_0 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000001284 174.0
LYD1_k127_1366180_1 PFAM Mo-dependent nitrogenase - - - 0.00000000000001986 85.0
LYD1_k127_1385031_0 endonuclease activity - - - 0.0000000000000000000000000000000000000000000000006057 184.0
LYD1_k127_1385031_1 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000007131 166.0
LYD1_k127_1385031_2 Protein of unknown function (DUF5131) - - - 0.0000000005841 70.0
LYD1_k127_1387385_0 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 321.0
LYD1_k127_1387385_1 mevalonate kinase K00869 - 2.7.1.36 0.000000000000000000000000000000000000009443 162.0
LYD1_k127_1387385_2 decarboxylase K01597 - 4.1.1.33 0.00000000000000000000000001935 113.0
LYD1_k127_1387385_3 COG1522 Transcriptional regulators - - - 0.0000000000000000004349 89.0
LYD1_k127_1387555_0 RNA recognition motif - - - 0.0000000000000000000000003417 107.0
LYD1_k127_1387555_1 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000003548 94.0
LYD1_k127_1387555_2 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water K00507 - 1.14.19.1 0.00000000000141 68.0
LYD1_k127_1387754_0 Predicted membrane protein (DUF2254) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007088 404.0
LYD1_k127_1387754_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 306.0
LYD1_k127_1387754_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003112 243.0
LYD1_k127_1387754_3 HD domain - - - 0.000000000001792 70.0
LYD1_k127_1388102_0 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 579.0
LYD1_k127_1388102_1 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 321.0
LYD1_k127_1388102_2 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 306.0
LYD1_k127_1388102_3 - - - - 0.000000000000000000000001271 120.0
LYD1_k127_1388102_4 4Fe-4S binding domain - - - 0.0000000005776 61.0
LYD1_k127_1396052_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.507e-270 853.0
LYD1_k127_1396052_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0010468,GO:0016020,GO:0019222,GO:0030312,GO:0040007,GO:0043388,GO:0044093,GO:0044464,GO:0050789,GO:0051098,GO:0051099,GO:0051101,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:2000677,GO:2000679 - 0.00000000000000000000000001748 113.0
LYD1_k127_1396052_2 TPR repeat - - - 0.0001846 53.0
LYD1_k127_1403984_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 369.0
LYD1_k127_1403984_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000003831 212.0
LYD1_k127_1403984_2 - - - - 0.00000000000000000000000000001489 125.0
LYD1_k127_1407923_0 adenosylhomocysteinase activity K01251 - 3.3.1.1 1.085e-194 630.0
LYD1_k127_1407923_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005822 255.0
LYD1_k127_1407923_2 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000105 252.0
LYD1_k127_1407923_3 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000002642 204.0
LYD1_k127_1407923_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000005227 186.0
LYD1_k127_1407923_5 Mitochondrial small ribosomal subunit Rsm22 - - - 0.0000000000000000000000000000000000000155 157.0
LYD1_k127_1407923_6 PFAM glycosyl transferase family 2 - - - 0.000002056 60.0
LYD1_k127_1407923_7 PAP2 superfamily - - - 0.00009414 55.0
LYD1_k127_1411174_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 1.614e-250 807.0
LYD1_k127_1411174_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000005151 245.0
LYD1_k127_1411174_2 phosphate ion binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000003987 250.0
LYD1_k127_1411174_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000109 163.0
LYD1_k127_1416513_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 347.0
LYD1_k127_1416513_1 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000001567 183.0
LYD1_k127_1416513_2 Sulfotransferase family - - - 0.00000000000000000000000002011 121.0
LYD1_k127_1416513_3 Glycosyl transferase, family 2 - - - 0.00000000000000000006497 101.0
LYD1_k127_1416513_4 Glycosyltransferase like family 2 - - - 0.000000000000002007 90.0
LYD1_k127_1416513_5 - - - - 0.0000005689 59.0
LYD1_k127_1423981_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000484 441.0
LYD1_k127_1423981_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 359.0
LYD1_k127_1423981_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000001818 192.0
LYD1_k127_1423981_3 Belongs to the ompA family - - - 0.000000000001084 81.0
LYD1_k127_1423981_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000009225 68.0
LYD1_k127_1425666_0 Heterodisulfide reductase subunit A and related polyferredoxins K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 467.0
LYD1_k127_1425666_1 histidine kinase, dimerisation and phosphoacceptor region - - - 0.0000000000000000000000000000000000007022 151.0
LYD1_k127_1427612_0 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 316.0
LYD1_k127_1427612_1 Pectinesterase K01051 - 3.1.1.11 0.000000000000000000000000000000000000000000000000000000000001648 214.0
LYD1_k127_1427612_2 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000001593 128.0
LYD1_k127_1427612_3 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000002083 115.0
LYD1_k127_1427612_4 SPTR Hemolysin-type calcium-binding region - - - 0.000000000000000000001764 110.0
LYD1_k127_143877_0 mannose metabolic process K01191 - 3.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 551.0
LYD1_k127_143877_1 radical SAM domain protein K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004371 243.0
LYD1_k127_1463575_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 527.0
LYD1_k127_1463575_1 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 323.0
LYD1_k127_1463575_2 Polyprenyl synthetase K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006572 299.0
LYD1_k127_1463575_3 PFAM glycoside hydrolase family 10 - - - 0.0000000000000001016 91.0
LYD1_k127_1463575_4 Glycoside hydrolase family 44 K01179 - 3.2.1.4 0.000000000003932 77.0
LYD1_k127_1463575_5 Protein of unknown function (DUF2934) - - - 0.00004708 49.0
LYD1_k127_1463859_0 Beta-L-arabinofuranosidase, GH127 - - - 0.00000000000000000000000000000000000000000000000008326 193.0
LYD1_k127_1463859_1 Glycoside-hydrolase family GH114 - - - 0.000000000000000000000000000000000007294 139.0
LYD1_k127_1463859_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.00000000000000000000000000000001708 139.0
LYD1_k127_1463859_3 Protein of unknown function (DUF1565) - - - 0.0000000000000000000000000006753 120.0
LYD1_k127_1463859_4 - - - - 0.000000000003694 73.0
LYD1_k127_1463859_5 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.00000004168 66.0
LYD1_k127_1477309_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 452.0
LYD1_k127_1477309_1 SnoaL-like polyketide cyclase - - - 0.000000000000000000000005576 102.0
LYD1_k127_1481197_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0 1288.0
LYD1_k127_1481197_1 DNA helicase K03657 - 3.6.4.12 9.342e-203 656.0
LYD1_k127_1481197_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993,K02022,K03585 - - 0.00000000006411 76.0
LYD1_k127_1481197_3 Diguanylate cyclase - - - 0.0000000002328 65.0
LYD1_k127_1481197_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000002286 61.0
LYD1_k127_1485191_0 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 320.0
LYD1_k127_1485191_1 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000962 258.0
LYD1_k127_1485191_2 Integrase core domain - - - 0.0000000000000000000000000000000000000000000000000000001536 201.0
LYD1_k127_1485191_3 Bacterial PH domain - - - 0.0000000000000000000000000000000000000000000000001212 183.0
LYD1_k127_1485191_4 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000003666 179.0
LYD1_k127_1485191_5 B-box zinc finger - - - 0.00000000000000000000000000000000000000003268 171.0
LYD1_k127_1485191_6 - - - - 0.000000000000000000000000000000003035 134.0
LYD1_k127_1485191_7 Integrase core domain - - - 0.0000000000000000000000000000001156 132.0
LYD1_k127_1485191_8 Putative transposase - - - 0.0004321 52.0
LYD1_k127_1500970_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003166 261.0
LYD1_k127_1500970_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000001323 90.0
LYD1_k127_1500970_2 lyase activity - - - 0.000000000007592 76.0
LYD1_k127_1500970_3 - - - - 0.00001106 55.0
LYD1_k127_1536801_0 WD40-like Beta Propeller Repeat - - - 0.000000229 63.0
LYD1_k127_159364_0 Transcriptional regulator K03655,K10439,K11708 - 3.6.4.12 8.739e-203 648.0
LYD1_k127_159364_1 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 410.0
LYD1_k127_159364_10 SMART PDZ DHR GLGF domain protein K11749 - - 0.000000000000000000000000000000002584 132.0
LYD1_k127_159364_11 Histidine kinase-like ATPases - - - 0.000000000000000000000000000007723 135.0
LYD1_k127_159364_12 domain, Protein - - - 0.0000000000000000003057 97.0
LYD1_k127_159364_13 Amb_all K01728 - 4.2.2.2 0.00000000004625 73.0
LYD1_k127_159364_14 PFAM Polyketide cyclase dehydrase and lipid transport - - - 0.000000188 63.0
LYD1_k127_159364_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 402.0
LYD1_k127_159364_3 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 393.0
LYD1_k127_159364_4 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009618 312.0
LYD1_k127_159364_5 PFAM asparagine synthase K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 303.0
LYD1_k127_159364_6 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000001177 266.0
LYD1_k127_159364_7 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000005845 256.0
LYD1_k127_159364_8 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000005112 237.0
LYD1_k127_159364_9 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000001142 237.0
LYD1_k127_159756_1 PFAM Excinuclease ABC C subunit domain protein - - - 0.000000000000000000000000002936 113.0
LYD1_k127_159756_2 tail specific protease - - - 0.00000000000000000000000003151 123.0
LYD1_k127_1606717_0 Methylates ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000000000000000000223 213.0
LYD1_k127_1606717_1 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000001015 162.0
LYD1_k127_1606717_2 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.00000000000000000000004938 111.0
LYD1_k127_1606717_3 RDD family - - - 0.0000000000000000006169 96.0
LYD1_k127_1606717_4 structural constituent of ribosome K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000003999 70.0
LYD1_k127_1606717_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000003214 49.0
LYD1_k127_1609270_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2244.0
LYD1_k127_1609270_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2214.0
LYD1_k127_1609270_10 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000001375 121.0
LYD1_k127_1609270_11 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000001528 64.0
LYD1_k127_1609270_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 6.807e-262 825.0
LYD1_k127_1609270_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 321.0
LYD1_k127_1609270_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000002212 246.0
LYD1_k127_1609270_5 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000003841 222.0
LYD1_k127_1609270_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000004989 219.0
LYD1_k127_1609270_7 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000002979 223.0
LYD1_k127_1609270_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000004963 156.0
LYD1_k127_1609270_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000005596 131.0
LYD1_k127_1616531_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 563.0
LYD1_k127_1616531_1 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 572.0
LYD1_k127_1616531_2 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000005947 211.0
LYD1_k127_1616531_3 DinB superfamily - - - 0.000000000000000002091 93.0
LYD1_k127_1621578_0 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K18008 - 1.12.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 302.0
LYD1_k127_1625157_0 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001345 275.0
LYD1_k127_1625157_1 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000006588 272.0
LYD1_k127_1625157_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008129 273.0
LYD1_k127_1625157_3 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000000000003664 230.0
LYD1_k127_1625157_4 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000557 156.0
LYD1_k127_1625157_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001117 116.0
LYD1_k127_1625157_6 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000001477 107.0
LYD1_k127_1633031_0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 330.0
LYD1_k127_1633031_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001959 269.0
LYD1_k127_1633031_2 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000007188 203.0
LYD1_k127_1633031_3 cell adhesion involved in biofilm formation - - - 0.0000000000000000000115 107.0
LYD1_k127_1633031_4 Parallel beta-helix repeats - - - 0.00000000000005094 82.0
LYD1_k127_1633031_5 phosphinothricin N-acetyltransferase activity - - - 0.0000448 54.0
LYD1_k127_1641480_0 3-isopropylmalate dehydratase activity K01703 GO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009316,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.2.1.33,4.2.1.35 2.366e-209 668.0
LYD1_k127_1641480_1 Dioxygenases related to 2-nitropropane dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 432.0
LYD1_k127_1641480_2 Psort location CytoplasmicMembrane, score 10.00 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006583 351.0
LYD1_k127_1641480_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000976 236.0
LYD1_k127_1641480_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000003715 227.0
LYD1_k127_1641480_5 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000007582 179.0
LYD1_k127_1642361_0 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006983 374.0
LYD1_k127_1642361_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 314.0
LYD1_k127_1642361_2 - - - - 0.00000000000000000000000000003869 128.0
LYD1_k127_1642361_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00004216 55.0
LYD1_k127_165325_0 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 523.0
LYD1_k127_165325_1 NADH dehydrogenase K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 418.0
LYD1_k127_1658094_0 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 324.0
LYD1_k127_1658094_1 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002938 272.0
LYD1_k127_1662883_0 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 360.0
LYD1_k127_1662883_2 FecR protein - - - 0.00000000000000000000000000000008667 140.0
LYD1_k127_1662883_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000004617 133.0
LYD1_k127_1662883_5 - - - - 0.00000000000000002242 89.0
LYD1_k127_1662883_6 oxidoreductase activity K07114 - - 0.00000000000001423 87.0
LYD1_k127_166653_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 342.0
LYD1_k127_166653_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003773 279.0
LYD1_k127_166653_2 Methyltransferase domain - - - 0.0000000000000000000000000000558 131.0
LYD1_k127_1676637_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000002544 158.0
LYD1_k127_1676637_1 Belongs to the peptidase S11 family K07262 - - 0.000000000000000000000000000000000000007009 163.0
LYD1_k127_1676637_2 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000000004631 139.0
LYD1_k127_1676637_3 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000003339 116.0
LYD1_k127_168409_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 5.092e-260 829.0
LYD1_k127_168409_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 388.0
LYD1_k127_1685492_0 Major Facilitator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 508.0
LYD1_k127_1685492_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 394.0
LYD1_k127_1685492_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K02548,K03179,K17105 - 2.5.1.39,2.5.1.42,2.5.1.74 0.000000000000000000000000000000000000000000000000000000000007515 229.0
LYD1_k127_1685492_3 Isoprenylcysteine carboxyl methyltransferase K16168 - - 0.00000000000000000000000000000000003229 154.0
LYD1_k127_1685492_4 FAE1/Type III polyketide synthase-like protein K16167 - - 0.0000000000000000000000000008767 115.0
LYD1_k127_1685492_5 Regulatory protein MarR - - - 0.00000006845 61.0
LYD1_k127_1691451_0 - K07004 - - 0.00000000000000005721 96.0
LYD1_k127_1691451_1 - - - - 0.0000000001605 75.0
LYD1_k127_1691451_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000255 67.0
LYD1_k127_1712627_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.4.1.2,1.4.1.3,1.4.1.4 3.365e-217 706.0
LYD1_k127_1712627_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 419.0
LYD1_k127_1712627_2 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003825 343.0
LYD1_k127_1712627_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 311.0
LYD1_k127_1712627_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 307.0
LYD1_k127_1712627_5 Protein kinase domain K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000006065 218.0
LYD1_k127_1712627_7 PFAM macrophage migration inhibitory factor - - - 0.00000000000000000000000001413 113.0
LYD1_k127_1712627_8 oligosaccharyl transferase activity - - - 0.0000000000000000004126 102.0
LYD1_k127_1712627_9 capsule polysaccharide biosynthetic process - - - 0.0001584 54.0
LYD1_k127_1714616_0 Sodium/hydrogen exchanger family K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003788 623.0
LYD1_k127_1714616_1 ATP-dependent helicase HrpB K03579 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 527.0
LYD1_k127_1714616_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.00000000000000000000000000000000000000000001979 170.0
LYD1_k127_1714616_3 bacterial (prokaryotic) histone like domain K05788 - - 0.00000000000000000000000001267 115.0
LYD1_k127_1718985_0 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 344.0
LYD1_k127_1718985_1 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 328.0
LYD1_k127_1718985_2 Spore coat - - - 0.000000000000000000000000000000000000000000000000000007941 213.0
LYD1_k127_1718985_3 polysaccharide deacetylase - - - 0.000000000000000000000000000000000001584 155.0
LYD1_k127_1718985_4 superoxide dismutase activity - - - 0.000000000000000000000000004228 119.0
LYD1_k127_1718985_5 Parallel beta-helix repeats - - - 0.00000000000000000001818 107.0
LYD1_k127_1718985_6 Belongs to the pirin family K06911 - - 0.000003138 50.0
LYD1_k127_1718985_7 NlpC/P60 family - - - 0.00005869 48.0
LYD1_k127_1718985_8 metallopeptidase activity - - - 0.0001966 51.0
LYD1_k127_1719649_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08244 - 2.7.9.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 490.0
LYD1_k127_1719649_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000001032 233.0
LYD1_k127_1719649_2 PFAM Xylose isomerase - - - 0.000000001077 69.0
LYD1_k127_1728664_0 NUBPL iron-transfer P-loop NTPase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 309.0
LYD1_k127_1728664_1 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002805 286.0
LYD1_k127_1728664_2 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000002331 276.0
LYD1_k127_1728664_3 endonuclease III K07457 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001557 251.0
LYD1_k127_1728664_4 Transcriptional regulator - - - 0.00000000000008958 83.0
LYD1_k127_1730329_0 GTP-binding protein K06207 - - 4.173e-232 730.0
LYD1_k127_1730329_1 PFAM H transporting two-sector ATPase alpha beta subunit central region K02412,K03224 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 537.0
LYD1_k127_1730329_2 Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000005702 117.0
LYD1_k127_1730329_3 flagellar assembly protein FliH K02411 - - 0.0000001153 63.0
LYD1_k127_1730329_4 PD-(D/E)XK nuclease superfamily - - - 0.0001958 47.0
LYD1_k127_1731929_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 533.0
LYD1_k127_1731929_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001156 280.0
LYD1_k127_1731929_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000004097 180.0
LYD1_k127_1731929_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000008014 144.0
LYD1_k127_1731929_4 Zn-dependent proteases and their inactivated homologs K03592 - - 0.000000000000000004974 84.0
LYD1_k127_173764_0 PFAM Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004776 532.0
LYD1_k127_173764_1 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 430.0
LYD1_k127_173764_2 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 423.0
LYD1_k127_173764_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000004141 168.0
LYD1_k127_1761370_0 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 420.0
LYD1_k127_1761370_1 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006003 250.0
LYD1_k127_1775452_0 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 321.0
LYD1_k127_1775452_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002668 280.0
LYD1_k127_1775452_2 6-phosphofructokinase activity K00850,K00895,K21071 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005975,GO:0006002,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008443,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019637,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0046835,GO:0046872,GO:0047334,GO:0071704,GO:1901135 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000005882 246.0
LYD1_k127_1775452_3 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000002094 192.0
LYD1_k127_1775452_4 Bacterial membrane protein YfhO - - - 0.00000000000000000000000000000000000000003261 175.0
LYD1_k127_1775452_5 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000001389 158.0
LYD1_k127_1775452_6 Membrane-associated phospholipid phosphatase K19302 - 3.6.1.27 0.0000000000000000000000000000005166 130.0
LYD1_k127_1775452_7 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00002388 49.0
LYD1_k127_1775452_8 Belongs to the TPP enzyme family K00156,K00158 - 1.2.3.3,1.2.5.1 0.00004089 48.0
LYD1_k127_1787815_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1080.0
LYD1_k127_1787815_1 Condensation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006922 436.0
LYD1_k127_1787815_2 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 369.0
LYD1_k127_1787815_3 RNA pseudouridylate synthase K06175 - 5.4.99.26 0.0000000000000000000000000000000000000000000000000000000000008555 238.0
LYD1_k127_1787815_4 depolymerase - - - 0.00003974 51.0
LYD1_k127_1794583_0 2 iron, 2 sulfur cluster binding K02823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 475.0
LYD1_k127_1794583_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K16950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172 409.0
LYD1_k127_1804524_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009012 374.0
LYD1_k127_1804524_1 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006211 279.0
LYD1_k127_180693_0 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007771 543.0
LYD1_k127_180693_1 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 351.0
LYD1_k127_180693_2 GAF domain - - - 0.00000000000000000000000000000000000000000000006479 175.0
LYD1_k127_180693_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000003405 164.0
LYD1_k127_180693_4 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000001323 129.0
LYD1_k127_180693_5 cheY-homologous receiver domain - - - 0.0000000000000000000000001659 114.0
LYD1_k127_180693_6 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.00000000000000002227 83.0
LYD1_k127_1807908_0 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.000000000000000000000000000000000000004454 161.0
LYD1_k127_1807908_1 - - - - 0.0000001457 57.0
LYD1_k127_1807908_2 Protein kinase domain K12132 - 2.7.11.1 0.0002665 53.0
LYD1_k127_1808469_0 Belongs to the glycosyl hydrolase 43 family - - - 7.975e-217 681.0
LYD1_k127_1808469_1 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 355.0
LYD1_k127_1808469_2 Uncharacterized protein conserved in bacteria (DUF2135) - - - 0.00005411 55.0
LYD1_k127_1809084_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 2.247e-247 782.0
LYD1_k127_1809084_1 Peptidase family S58 K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 468.0
LYD1_k127_1809084_2 COG1668 ABC-type Na efflux pump, permease component K01992,K09696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004708 276.0
LYD1_k127_1809084_3 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007447 244.0
LYD1_k127_1809084_4 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000244 215.0
LYD1_k127_1809084_5 diguanylate cyclase - - - 0.000000000000000000000000000000000000002217 162.0
LYD1_k127_1809084_6 ABC transporter (ATP-binding protein)-putative sodium extrusion ABC transporter K09697 - 3.6.3.7 0.0000000000000000000000000000003087 125.0
LYD1_k127_1809084_7 cheY-homologous receiver domain - - - 0.0000000000000000000002636 112.0
LYD1_k127_180947_0 formate C-acetyltransferase glycine radical - - - 3.667e-285 902.0
LYD1_k127_180947_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 596.0
LYD1_k127_180947_11 - - - - 0.0000000000000009582 79.0
LYD1_k127_180947_12 Membrane protease subunits, stomatin prohibitin homologs - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000009285 72.0
LYD1_k127_180947_13 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000005561 75.0
LYD1_k127_180947_14 - - - - 0.0000003356 57.0
LYD1_k127_180947_2 Group II intron, maturase-specific domain K00986 - 2.7.7.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 526.0
LYD1_k127_180947_3 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 312.0
LYD1_k127_180947_4 TIGRFAM glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001121 280.0
LYD1_k127_180947_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001797 267.0
LYD1_k127_180947_6 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009894 269.0
LYD1_k127_180947_7 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000218 194.0
LYD1_k127_180947_8 - - - - 0.0000000000000000000000004407 113.0
LYD1_k127_180947_9 PFAM plasmid K06218 - - 0.00000000000000000000001433 102.0
LYD1_k127_1824178_0 MgtC family - - - 0.0000000000000000000000000000000000000474 151.0
LYD1_k127_1824178_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000001245 141.0
LYD1_k127_1824178_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000004047 117.0
LYD1_k127_1824178_3 Belongs to the ompA family K03286,K20276 - - 0.000000000002148 79.0
LYD1_k127_1824178_4 TIGRFAM DNA topoisomerase III K03169 - 5.99.1.2 0.00000000002042 64.0
LYD1_k127_1824178_5 Belongs to the ompA family - - - 0.000000007352 68.0
LYD1_k127_1826888_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008032 412.0
LYD1_k127_1826888_1 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 402.0
LYD1_k127_1829478_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B - - - 7.008e-244 778.0
LYD1_k127_1829478_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 357.0
LYD1_k127_1829478_2 signal sequence binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009054 282.0
LYD1_k127_1829478_3 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000001483 259.0
LYD1_k127_1829478_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0001126 49.0
LYD1_k127_1839261_0 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003913 367.0
LYD1_k127_1839261_1 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 310.0
LYD1_k127_1839261_2 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 317.0
LYD1_k127_1839261_3 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008764 268.0
LYD1_k127_1839990_0 transporter K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006091 271.0
LYD1_k127_1839990_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000324 276.0
LYD1_k127_1839990_2 M6 family metalloprotease domain protein - - - 0.0000000000000000000005766 109.0
LYD1_k127_1839990_3 regulator of chromosome condensation, RCC1 - - - 0.00000000000000007248 96.0
LYD1_k127_1839990_4 Amb_all K01728 - 4.2.2.2 0.00000003681 56.0
LYD1_k127_184298_0 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0001846 49.0
LYD1_k127_1864180_0 - - - - 0.000000000000000000000000000000000000000000000000000008607 207.0
LYD1_k127_1864180_1 - - - - 0.000001949 61.0
LYD1_k127_187507_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005444 460.0
LYD1_k127_187507_1 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005254 249.0
LYD1_k127_187507_2 Acid phosphatase homologues - - - 0.000000000000000000000000000000000000000000000000000000009924 208.0
LYD1_k127_187507_4 Protein of unknown function, DUF393 - - - 0.0000000000000000000000000000000000000001058 156.0
LYD1_k127_187507_6 Acid phosphatase homologues - - - 0.0000000000298 75.0
LYD1_k127_187507_7 SMART diacylglycerol kinase catalytic region K07029 - 2.7.1.107 0.00000207 60.0
LYD1_k127_1877800_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 424.0
LYD1_k127_1877800_1 Belongs to the frataxin family K06202 GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0016530,GO:0016722,GO:0016724,GO:0018282,GO:0018283,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0033554,GO:0034599,GO:0034986,GO:0036211,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0050896,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071840,GO:0098771,GO:0140104,GO:1901564 - 0.00000000000002437 79.0
LYD1_k127_1892062_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 439.0
LYD1_k127_1892062_1 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000174 262.0
LYD1_k127_1897571_0 Transporter K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 400.0
LYD1_k127_1897571_1 Sulfotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003764 246.0
LYD1_k127_1897571_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 0.000000000000000000000000000000000000000000000000000000000001633 211.0
LYD1_k127_190053_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 503.0
LYD1_k127_190053_1 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000001512 206.0
LYD1_k127_190053_2 FHA domain - - - 0.0000000000000000000001169 112.0
LYD1_k127_190053_3 PFAM Forkhead-associated protein - - - 0.0000000000000006538 91.0
LYD1_k127_190053_4 Domain of unknown function (DUF4215) - - - 0.00000000000006932 77.0
LYD1_k127_1903507_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 7.97e-230 726.0
LYD1_k127_1903507_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
LYD1_k127_1903507_10 - - - - 0.000000000000000001496 96.0
LYD1_k127_1903507_11 Preprotein translocase SecG subunit K03075 - - 0.00000000000000001605 94.0
LYD1_k127_1903507_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 405.0
LYD1_k127_1903507_3 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 340.0
LYD1_k127_1903507_4 regulation of RNA biosynthetic process - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 291.0
LYD1_k127_1903507_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005046 280.0
LYD1_k127_1903507_6 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003674 254.0
LYD1_k127_1903507_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.00000000000000000000000000000000000004065 150.0
LYD1_k127_1903507_8 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000001625 145.0
LYD1_k127_1903507_9 FtsX-like permease family - - - 0.00000000000000000000006665 100.0
LYD1_k127_1905645_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000857 351.0
LYD1_k127_1905645_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 337.0
LYD1_k127_1906074_0 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 361.0
LYD1_k127_1906074_1 Transcriptional regulator K03717 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 338.0
LYD1_k127_1906074_2 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 317.0
LYD1_k127_1906074_3 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000001501 79.0
LYD1_k127_1907727_0 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000009014 194.0
LYD1_k127_1907727_1 TIGRFAM Nucleotidyltransferase substrate binding protein, HI0074 - - - 0.0000000000000000000000001314 115.0
LYD1_k127_1926397_0 Belongs to the glycosyl hydrolase family 6 - - - 1.478e-262 827.0
LYD1_k127_1926397_1 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 349.0
LYD1_k127_1926397_2 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000001495 219.0
LYD1_k127_1926397_3 - - - - 0.000000000000000000000000000000000000000000000000000000001227 221.0
LYD1_k127_1926397_4 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000001903 199.0
LYD1_k127_1926397_5 long-chain fatty acid transporting porin activity K06076 - - 0.000000000000006751 88.0
LYD1_k127_1926397_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000008913 75.0
LYD1_k127_1932524_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.983e-271 846.0
LYD1_k127_1932524_1 PFAM Aldo keto reductase family K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 430.0
LYD1_k127_1932524_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009282 361.0
LYD1_k127_1932524_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000007547 216.0
LYD1_k127_1932524_4 PFAM Homoserine dehydrogenase K00003 - 1.1.1.3 0.0000000000000000000000000000000000000000000000000000134 195.0
LYD1_k127_1932524_5 sulfuric ester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000002728 214.0
LYD1_k127_1932524_6 Ribbon-helix-helix domain - - - 0.00000000000000000003794 93.0
LYD1_k127_1932524_7 repeat protein - - - 0.00007322 56.0
LYD1_k127_1940208_0 4Fe-4S dicluster domain K00184 - - 5.312e-285 905.0
LYD1_k127_1940208_1 PFAM Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002119 266.0
LYD1_k127_1940208_2 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000002543 143.0
LYD1_k127_194645_0 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000379 240.0
LYD1_k127_194645_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000005414 250.0
LYD1_k127_194645_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K00556,K03218,K03437 - 2.1.1.185,2.1.1.34 0.00000000000000000000000000000000000000000000000000004247 192.0
LYD1_k127_194645_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000001202 163.0
LYD1_k127_194645_4 - - - - 0.0000000000000000000000003452 111.0
LYD1_k127_194645_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000006072 76.0
LYD1_k127_194645_6 - - - - 0.000000008938 64.0
LYD1_k127_1952489_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007665 323.0
LYD1_k127_1952489_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000003447 139.0
LYD1_k127_1953458_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 373.0
LYD1_k127_1953458_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009207 378.0
LYD1_k127_1953458_2 Belongs to the serpin family K13963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 344.0
LYD1_k127_1953458_3 Hydrolase Family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 308.0
LYD1_k127_1953458_4 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006898 274.0
LYD1_k127_1953458_5 domain, Protein K00712,K21471 - 2.4.1.52 0.000000000000000000000000000000000000000000000000000000001445 224.0
LYD1_k127_1953458_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000001448 201.0
LYD1_k127_1953458_7 N-acetylmuramoyl-L-alanine amidase K01447 - 3.5.1.28 0.00000000001123 76.0
LYD1_k127_1953458_8 Forkhead associated domain - - - 0.000000002477 67.0
LYD1_k127_1953458_9 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000004607 69.0
LYD1_k127_1956976_0 cell adhesion involved in biofilm formation - - - 0.0000001036 64.0
LYD1_k127_1965673_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1159.0
LYD1_k127_1965673_1 Peptidase, M61 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 419.0
LYD1_k127_1965673_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004764 284.0
LYD1_k127_1965673_4 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000001141 81.0
LYD1_k127_1965673_5 guanyl-nucleotide exchange factor activity K01179,K01183,K02034 - 3.2.1.14,3.2.1.4 0.000000006844 69.0
LYD1_k127_1965673_6 Parallel beta-helix repeats - - - 0.0000005713 63.0
LYD1_k127_1965673_7 PFAM PEGA domain - - - 0.0001721 53.0
LYD1_k127_1972058_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003622 293.0
LYD1_k127_1972058_1 Stage II sporulation protein E K07315 - 3.1.3.3 0.00000000000000000000000000000000000000004557 174.0
LYD1_k127_1972058_2 phosphorelay signal transduction system - - - 0.00000000000000000000000002271 111.0
LYD1_k127_1972058_3 lipoprotein biosynthetic process - - - 0.00000000000568 79.0
LYD1_k127_1983319_0 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009504 607.0
LYD1_k127_1983319_1 High confidence in function and specificity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 601.0
LYD1_k127_1987717_0 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009017 419.0
LYD1_k127_1987717_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 372.0
LYD1_k127_1987717_2 Belongs to the glycosyl hydrolase 28 family K01184 - 3.2.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000006915 267.0
LYD1_k127_1987717_3 - - - - 0.0002039 47.0
LYD1_k127_1988985_0 Protein of unknown function (DUF3237) - - - 0.000000000000000000000000000000000000000000000000000000000000000001734 231.0
LYD1_k127_1988985_1 - - - - 0.0000000000000000000000003612 109.0
LYD1_k127_1988985_2 - - - - 0.0000000000000000000005696 104.0
LYD1_k127_1988985_3 Phosphodiester glycosidase - - - 0.0000000000000000102 94.0
LYD1_k127_1988985_4 CBD_II K19668 - 3.2.1.91 0.00000000000000002177 88.0
LYD1_k127_1993223_0 - K22017 GO:0001894,GO:0002218,GO:0002220,GO:0002223,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003008,GO:0003674,GO:0005102,GO:0005176,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0005887,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007586,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010669,GO:0012505,GO:0016020,GO:0016021,GO:0016266,GO:0019538,GO:0022600,GO:0023052,GO:0030197,GO:0030277,GO:0031012,GO:0031224,GO:0031226,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0034645,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0048871,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 373.0
LYD1_k127_1993223_1 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002174 263.0
LYD1_k127_1993223_2 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000000008443 184.0
LYD1_k127_1993223_3 peptide transport - - - 0.000000000000000000000000000000000000002357 158.0
LYD1_k127_1993223_4 Alpha-tubulin suppressor and related RCC1 domain-containing proteins - - - 0.000000000000000406 93.0
LYD1_k127_1997111_0 formate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 337.0
LYD1_k127_1997111_1 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002091 265.0
LYD1_k127_1997111_2 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000001644 225.0
LYD1_k127_1997111_3 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000001563 142.0
LYD1_k127_1997111_4 tRNA methyltransferase complex GCD14 subunit - - - 0.0000000000000000000000000002965 116.0
LYD1_k127_1997111_5 tRNA methyltransferase complex GCD14 subunit - - - 0.00000000000000000001928 94.0
LYD1_k127_1997111_6 Cytochrome c bacterial - - - 0.0000000000000001579 82.0
LYD1_k127_1997111_8 Competence protein ComEC K02238 - - 0.0001024 46.0
LYD1_k127_1998055_0 Flagellar Motor Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 342.0
LYD1_k127_1998055_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006404 334.0
LYD1_k127_1998055_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000006868 155.0
LYD1_k127_2011726_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 465.0
LYD1_k127_2011726_1 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000003577 147.0
LYD1_k127_2011726_2 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000001291 139.0
LYD1_k127_2011726_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000005189 122.0
LYD1_k127_2017280_0 ABC transporter K06020 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 505.0
LYD1_k127_2017280_1 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 306.0
LYD1_k127_2017280_2 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.00000000000000000000000000000008073 140.0
LYD1_k127_2018100_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 375.0
LYD1_k127_2018100_1 Organic Anion Transporter Polypeptide (OATP) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 314.0
LYD1_k127_2018100_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000002474 261.0
LYD1_k127_2018100_3 3'(2'),5'-bisphosphate nucleotidase activity K01082 - 3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000001745 239.0
LYD1_k127_2018100_4 - - - - 0.000000000000000000000000000000000000000000000000000000002462 220.0
LYD1_k127_2018100_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000007152 209.0
LYD1_k127_2018100_6 Transglycosylase K08309 - - 0.00000000000000000000000000000000000000001037 166.0
LYD1_k127_2018100_7 Mitochondrial biogenesis AIM24 - - - 0.0000000000000000000000000000001168 139.0
LYD1_k127_2018100_8 - - - - 0.000000000000000000000000000004726 125.0
LYD1_k127_2018100_9 PD-(D/E)XK nuclease superfamily - - - 0.00002387 48.0
LYD1_k127_2020094_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 425.0
LYD1_k127_2020094_1 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 362.0
LYD1_k127_2020094_10 phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000000004348 213.0
LYD1_k127_2020094_11 phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000005406 174.0
LYD1_k127_2020094_12 - - - - 0.0000001673 55.0
LYD1_k127_2020094_2 Phosphate transport system permease K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 357.0
LYD1_k127_2020094_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007937 364.0
LYD1_k127_2020094_4 Phosphate sensor histidine kinase, HAMP and PAS domain-containing K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 353.0
LYD1_k127_2020094_5 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005427 330.0
LYD1_k127_2020094_6 peptidase m48, ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 306.0
LYD1_k127_2020094_7 PFAM response regulator receiver K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002595 283.0
LYD1_k127_2020094_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004978 247.0
LYD1_k127_2020094_9 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000000000000000000000000000003167 201.0
LYD1_k127_2035069_0 Glycosyl hydrolases family 2 - - - 1.2e-241 766.0
LYD1_k127_2038190_0 GMC oxidoreductase K03333 - 1.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 554.0
LYD1_k127_2038190_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 531.0
LYD1_k127_2038190_2 Aldehyde dehydrogenase family K22445 - 1.2.99.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 325.0
LYD1_k127_2038190_3 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001887 264.0
LYD1_k127_2038190_4 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.00000000000000000000000000000000000001442 147.0
LYD1_k127_2038190_5 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381 - 1.8.1.2 0.000000000000000000000000000000000003505 139.0
LYD1_k127_2047700_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K18501 - - 2.308e-204 644.0
LYD1_k127_2047700_1 transcription factor binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005209 488.0
LYD1_k127_2047700_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01697,K01738,K12339 - 2.5.1.47,4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 431.0
LYD1_k127_2048633_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458 366.0
LYD1_k127_2048633_1 Peptidase family M54 K06974 - - 0.0000000000000000000000000000000000003849 150.0
LYD1_k127_2049418_0 Ricin-type beta-trefoil - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 420.0
LYD1_k127_2049418_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002532 281.0
LYD1_k127_2049496_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 426.0
LYD1_k127_2049496_1 Ricin-type beta-trefoil - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 400.0
LYD1_k127_2049496_2 DUF3160 - - - 0.00000000000000000000000000000000000000001601 158.0
LYD1_k127_2052826_0 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 298.0
LYD1_k127_2052826_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001444 274.0
LYD1_k127_2052826_2 glycine decarboxylation via glycine cleavage system K02437 - - 0.0000000002981 72.0
LYD1_k127_2056630_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007535 503.0
LYD1_k127_2056630_1 Glycosyl hydrolase family 59 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 371.0
LYD1_k127_2056630_2 Pyruvate phosphate dikinase - - - 0.000000000000000000000000000000000000000000000000000000000000000001716 254.0
LYD1_k127_2056630_3 Putative esterase - - - 0.0000000000000000000001305 101.0
LYD1_k127_2056630_4 Ricin-type beta-trefoil - - - 0.0000000000009939 70.0
LYD1_k127_2059333_0 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
LYD1_k127_2059333_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000001748 196.0
LYD1_k127_2059333_2 SAM-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000001131 176.0
LYD1_k127_2059333_3 - - - - 0.000000000000002973 86.0
LYD1_k127_2059333_4 Anti-sigma-K factor rskA - - - 0.0002978 52.0
LYD1_k127_2063774_0 Esterase, phb depolymerase family K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 427.0
LYD1_k127_2063774_1 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 346.0
LYD1_k127_2063774_2 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000367 78.0
LYD1_k127_2063774_3 protein kinase activity - - - 0.0009002 51.0
LYD1_k127_2063997_0 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000002904 242.0
LYD1_k127_2063997_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000002182 222.0
LYD1_k127_2063997_2 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000001026 180.0
LYD1_k127_2063997_4 - - - - 0.000000000000000000000000000000001309 147.0
LYD1_k127_2063997_5 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.000000807 61.0
LYD1_k127_2063997_6 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00004023 50.0
LYD1_k127_2069650_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007303 321.0
LYD1_k127_2069650_1 Carboxylesterase K06999 - - 0.00002536 53.0
LYD1_k127_2072996_0 Arsenic resistance protein K03325 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015104,GO:0015105,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0015699,GO:0015700,GO:0016020,GO:0022804,GO:0022857,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 360.0
LYD1_k127_2072996_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000733 196.0
LYD1_k127_2072996_2 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000009874 164.0
LYD1_k127_2076975_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.849e-277 874.0
LYD1_k127_2081027_0 Homologues of snake disintegrins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007039 466.0
LYD1_k127_2081027_1 CAAX prenyl protease N-terminal, five membrane helices - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 431.0
LYD1_k127_2081027_2 Belongs to the DegT DnrJ EryC1 family K18653 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009987,GO:0016740,GO:0016769,GO:0016999,GO:0017000,GO:0017144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004439 372.0
LYD1_k127_2081027_3 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 349.0
LYD1_k127_2081027_4 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001455 237.0
LYD1_k127_2081027_5 Family membership - - - 0.0000000000000000000000000000000000000000000000003334 196.0
LYD1_k127_2081027_6 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.00000006748 65.0
LYD1_k127_2081027_7 Low-density lipoprotein receptor domain class A - - - 0.00001996 56.0
LYD1_k127_2088469_0 DNA-binding transcriptional activator of the SARP family - - - 4.723e-207 665.0
LYD1_k127_2088469_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 317.0
LYD1_k127_2088469_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005697 306.0
LYD1_k127_2088469_3 Bacterial-like globin - - - 0.000000000000000000000000000000000000000002027 170.0
LYD1_k127_2088469_4 Beta propeller domain - - - 0.00000000000000000000000000005422 136.0
LYD1_k127_2088469_5 cheY-homologous receiver domain K11443 - - 0.0000000000000000000000000005056 115.0
LYD1_k127_2093692_0 PFAM NHL repeat containing protein - - - 3.344e-260 862.0
LYD1_k127_2093692_1 ClpX C4-type zinc finger - - - 0.0000004437 60.0
LYD1_k127_2099217_0 AAA ATPase domain - - - 5.377e-199 668.0
LYD1_k127_2099217_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 465.0
LYD1_k127_2099217_2 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 361.0
LYD1_k127_2099217_3 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 355.0
LYD1_k127_2099217_4 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 312.0
LYD1_k127_2099217_5 (EAL) domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 321.0
LYD1_k127_2099217_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005286 315.0
LYD1_k127_2099217_7 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000001778 226.0
LYD1_k127_2099217_8 methyltransferase - - - 0.0000000000000000000000000000000000002707 154.0
LYD1_k127_2099217_9 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000007368 143.0
LYD1_k127_2118825_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 422.0
LYD1_k127_2118825_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000001476 216.0
LYD1_k127_2118825_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000003937 202.0
LYD1_k127_2118825_3 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000217 179.0
LYD1_k127_2118825_4 Belongs to the pseudouridine synthase RsuA family K06178,K06182 - 5.4.99.21,5.4.99.22 0.000000000000000000000000000000000000774 148.0
LYD1_k127_2118825_5 - - - - 0.0000000000000000000000000009476 119.0
LYD1_k127_2138582_0 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002046 250.0
LYD1_k127_2138582_1 - - - - 0.0000000000000000000000000000000000000000000000009236 181.0
LYD1_k127_2138582_2 DUF3160 - - - 0.000000000000000000000000001542 123.0
LYD1_k127_2138582_3 - - - - 0.00000000000000000000000004667 119.0
LYD1_k127_2138582_4 Mannosyltransferase (PIG-V) - - - 0.00000000000000000000000009073 121.0
LYD1_k127_2138582_5 Protein of unknown function (DUF2845) - - - 0.00000001255 62.0
LYD1_k127_2138673_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 469.0
LYD1_k127_2138673_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 302.0
LYD1_k127_2138673_2 Two component regulator propeller - - - 0.0000000000004986 81.0
LYD1_k127_2141865_0 Kinase, PfkB family K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 499.0
LYD1_k127_2141865_1 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005785 494.0
LYD1_k127_2141865_2 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000009917 141.0
LYD1_k127_2141865_3 Methyl-transferase - - - 0.000000000000000000000000000000005037 139.0
LYD1_k127_2141865_4 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000005953 66.0
LYD1_k127_214951_0 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000497 346.0
LYD1_k127_214951_1 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000003185 181.0
LYD1_k127_214951_2 The glycine cleavage system catalyzes the degradation of glycine K00605,K06980,K22086 - 1.5.99.5,2.1.2.10 0.0000000000000000000004335 105.0
LYD1_k127_2152801_0 Glycosyl hydrolases family 2, sugar binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 484.0
LYD1_k127_2152801_1 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000006971 261.0
LYD1_k127_2152801_2 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000006493 132.0
LYD1_k127_2164221_0 heme binding - - - 0.00001487 59.0
LYD1_k127_2164221_1 signal transduction histidine kinase regulating citrate malate metabolism K02476 - 2.7.13.3 0.00003119 51.0
LYD1_k127_2167742_0 glycosyl transferase family K00697 - 2.4.1.15,2.4.1.347 9.326e-288 904.0
LYD1_k127_2167742_1 ABC transporter K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 608.0
LYD1_k127_2167742_2 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 390.0
LYD1_k127_2169153_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 428.0
LYD1_k127_2169153_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000006532 237.0
LYD1_k127_2169153_2 hydrolase of the alpha beta superfamily K07018 - - 0.0000000000000000000000000000000000000000000000000000000002734 207.0
LYD1_k127_2169153_3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000001034 179.0
LYD1_k127_216979_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07306,K08352 - 1.8.5.3,1.8.5.5 0.0 1147.0
LYD1_k127_216979_1 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006047 460.0
LYD1_k127_216979_2 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 332.0
LYD1_k127_216979_3 short chain dehydrogenase - - - 0.00000001254 58.0
LYD1_k127_2172158_0 Rhs Family - - - 8.989e-274 923.0
LYD1_k127_2172158_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 287.0
LYD1_k127_2172158_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000003731 155.0
LYD1_k127_2172158_3 COG3209 Rhs family protein - - - 0.0006963 55.0
LYD1_k127_2190471_0 malic protein domain protein K00027,K00029 - 1.1.1.38,1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 561.0
LYD1_k127_2190471_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 373.0
LYD1_k127_2190471_2 Type III restriction enzyme, res subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 323.0
LYD1_k127_2190471_3 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.0000000000000000000000000000000000000000000000007966 193.0
LYD1_k127_2190471_4 FMN binding - - - 0.000000000000000000000000000000000000000002669 160.0
LYD1_k127_2194118_0 OPT oligopeptide transporter protein - - - 2.292e-215 696.0
LYD1_k127_2194118_1 FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 368.0
LYD1_k127_2194118_2 alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 334.0
LYD1_k127_2194118_3 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 323.0
LYD1_k127_2194118_4 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000386 231.0
LYD1_k127_2194118_5 - - - - 0.0003327 52.0
LYD1_k127_2195084_0 Belongs to the bacterial solute-binding protein 9 family K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007439 267.0
LYD1_k127_2195084_1 PFAM ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000005569 199.0
LYD1_k127_2195084_2 Tfp pilus assembly protein FimV - - - 0.00000000000000000000000000000000000000000000006064 184.0
LYD1_k127_2195084_3 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000003445 174.0
LYD1_k127_2195084_4 6-phosphogluconolactonase 4 K01057 GO:0002229,GO:0002239,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0006081,GO:0006082,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0031090,GO:0034641,GO:0042126,GO:0042128,GO:0042579,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046496,GO:0050896,GO:0051156,GO:0051186,GO:0051704,GO:0051707,GO:0051775,GO:0052689,GO:0055086,GO:0071461,GO:0071704,GO:0071941,GO:0072524,GO:0098542,GO:0098588,GO:0098805,GO:1901135,GO:1901360,GO:1901564,GO:2001057 3.1.1.31 0.000000000002947 69.0
LYD1_k127_2195084_6 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.0000000005738 72.0
LYD1_k127_2195084_8 oxidoreductase activity K00505 - 1.14.18.1 0.0002101 55.0
LYD1_k127_2197416_0 GGGtGRT protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 501.0
LYD1_k127_2197416_1 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 341.0
LYD1_k127_2197416_2 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.0000000000006423 74.0
LYD1_k127_2199425_0 OmpA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006942 362.0
LYD1_k127_2199425_1 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000001093 168.0
LYD1_k127_2217065_0 IMG reference gene - - - 0.0000000000000000000000000000000000000000000000000000000000000001422 244.0
LYD1_k127_2217065_1 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000007502 206.0
LYD1_k127_2217065_3 Long-chain fatty acid transport protein K06076 - - 0.000000000000000004408 97.0
LYD1_k127_2217589_0 TIGRFAM Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 476.0
LYD1_k127_2217589_1 Sporulation related domain - - - 0.0000000000000000000000000000016 132.0
LYD1_k127_2217589_2 amine dehydrogenase activity - - - 0.0000000000000000000001347 114.0
LYD1_k127_2217589_3 ABC transporter substrate-binding protein - - - 0.00008874 46.0
LYD1_k127_2218086_0 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002571 556.0
LYD1_k127_2218086_1 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 353.0
LYD1_k127_2218086_2 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008452 341.0
LYD1_k127_2218086_3 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007709 299.0
LYD1_k127_2218086_4 MFS/sugar transport protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001178 284.0
LYD1_k127_2218086_5 Glycosyl hydrolases family 16 - - - 0.0000000000000000000000000000000000000000000000004361 193.0
LYD1_k127_2229732_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 408.0
LYD1_k127_2229732_1 Formyl transferase K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000001757 250.0
LYD1_k127_2229732_2 nucleotidyltransferase activity - - - 0.0000000004263 67.0
LYD1_k127_2229732_3 Protein of unknown function DUF86 - - - 0.0007889 49.0
LYD1_k127_2234822_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 594.0
LYD1_k127_2234822_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000005585 247.0
LYD1_k127_2235352_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 5.712e-269 861.0
LYD1_k127_2235352_1 oxidoreductase activity K07114 - - 0.0000000000000000000000004131 119.0
LYD1_k127_2235352_2 polysaccharide catabolic process K01218 - 3.2.1.78 0.0001117 54.0
LYD1_k127_2236766_0 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 497.0
LYD1_k127_2236766_1 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 327.0
LYD1_k127_2236766_2 Proton-conducting membrane transporter K12141 GO:0005575,GO:0005623,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0033554,GO:0044425,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 314.0
LYD1_k127_2236766_3 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000001966 168.0
LYD1_k127_2238442_0 YD repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 372.0
LYD1_k127_2238442_1 protein kinase activity - - - 0.000000000000002433 92.0
LYD1_k127_2238442_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000001971 86.0
LYD1_k127_2240010_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 369.0
LYD1_k127_2240010_1 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 314.0
LYD1_k127_2240010_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000001228 175.0
LYD1_k127_2249449_0 radical SAM domain protein K04034 - 1.21.98.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000255 269.0
LYD1_k127_2249449_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001203 263.0
LYD1_k127_2249449_2 - - - - 0.000000003992 66.0
LYD1_k127_2253438_0 Pyruvate phosphate dikinase PEP K01007 - 2.7.9.2 2.7e-255 814.0
LYD1_k127_2253438_1 Outer membrane lipoprotein-sorting protein K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006572 265.0
LYD1_k127_2256683_0 endonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001606 282.0
LYD1_k127_2256683_1 Protein of unknown function (DUF2442) - - - 0.0000000000000000000000000000005766 124.0
LYD1_k127_2256683_2 Protein of unknown function (DUF3644) - - - 0.0000000000000000000000000007817 129.0
LYD1_k127_2256683_4 - K03655 - 3.6.4.12 0.00000003544 66.0
LYD1_k127_2256683_5 Arylsulfotransferase (ASST) - - - 0.0002409 53.0
LYD1_k127_2260428_0 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 375.0
LYD1_k127_2260428_1 desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009285 321.0
LYD1_k127_2260428_2 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 313.0
LYD1_k127_2260428_3 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000006597 231.0
LYD1_k127_2260428_4 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000009566 199.0
LYD1_k127_2261130_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 591.0
LYD1_k127_2261130_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 472.0
LYD1_k127_2261130_2 Cytochrome C oxidase, cbb3-type, subunit III K12263 - - 0.0000003738 56.0
LYD1_k127_2265845_0 Glycosyl hydrolases family 43 - - - 0.0000000000000000000000000000000000000000000000128 175.0
LYD1_k127_2265845_1 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000003766 146.0
LYD1_k127_2265845_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000001855 90.0
LYD1_k127_2265845_3 protein trimerization - - - 0.0006417 53.0
LYD1_k127_2275877_0 Response regulator receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000001964 201.0
LYD1_k127_2275877_1 HIT domain K02503 - - 0.0000000000000000000000000000000000000000000000001967 178.0
LYD1_k127_2275877_2 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000001852 151.0
LYD1_k127_2275877_3 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000198 137.0
LYD1_k127_2275877_4 Transcriptional regulator - - - 0.000000000000000000000000000001414 129.0
LYD1_k127_2275877_5 chemotaxis K02659,K03408 - - 0.00000000000000000000000001377 111.0
LYD1_k127_2275877_6 Putative zinc-finger - - - 0.0000000002007 70.0
LYD1_k127_2276160_0 - - - - 0.00000000000000000000000000000000000000000000000000000000005206 218.0
LYD1_k127_2280916_0 Domain of unknown function (DUF362) - - - 1.545e-241 753.0
LYD1_k127_2280916_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 408.0
LYD1_k127_2280916_2 ATPase (AAA superfamily K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000191 239.0
LYD1_k127_2283204_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 385.0
LYD1_k127_2283204_1 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000000000000000000000000000000003219 228.0
LYD1_k127_2283204_2 High confidence in function and specificity - - - 0.000000000000000000000000000000000000000000000003864 178.0
LYD1_k127_2283204_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000002669 139.0
LYD1_k127_2283204_4 Oxidoreductase family, C-terminal alpha/beta domain K00118,K13020 - 1.1.1.335,1.1.99.28 0.000000000000000000003284 100.0
LYD1_k127_2283204_5 DNA ligase K01971 - 6.5.1.1 0.000000000000001429 81.0
LYD1_k127_2283204_6 Histidine kinase K07777 - 2.7.13.3 0.0000000001628 66.0
LYD1_k127_2283204_7 Peptidase_C39 like family - - - 0.00002873 56.0
LYD1_k127_2283204_8 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 0.0001166 53.0
LYD1_k127_230073_0 Glycosyl hydrolases family 8 K15531 - 3.2.1.156 0.00000000000000000000000000000000000000000000000000000000000001098 235.0
LYD1_k127_230073_1 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.000000000000000000000000001014 125.0
LYD1_k127_230073_2 iron ion homeostasis - - - 0.0000000000001197 79.0
LYD1_k127_2301178_0 Ricin-type beta-trefoil - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 416.0
LYD1_k127_2301178_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 355.0
LYD1_k127_2301178_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000001956 64.0
LYD1_k127_2301178_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000866 67.0
LYD1_k127_2301178_12 Nitroreductase family - - - 0.00000001583 59.0
LYD1_k127_2301178_13 FabA-like domain - - - 0.0000001649 59.0
LYD1_k127_2301178_14 nucleotidyltransferase activity K07061,K07075 - - 0.0000005438 57.0
LYD1_k127_2301178_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 316.0
LYD1_k127_2301178_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000001505 237.0
LYD1_k127_2301178_4 superoxide dismutase activity - - - 0.00000000000000000000000000000000001359 140.0
LYD1_k127_2301178_5 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000003977 134.0
LYD1_k127_2301178_6 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000005937 114.0
LYD1_k127_2301178_7 PFAM Patatin K07001 - - 0.000000000000000000002513 100.0
LYD1_k127_2301178_8 cheY-homologous receiver domain - - - 0.000000000000000003736 89.0
LYD1_k127_2301178_9 HEPN domain - - - 0.0000000000006153 75.0
LYD1_k127_2301686_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 541.0
LYD1_k127_2301686_2 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000008215 186.0
LYD1_k127_2301686_3 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.000000000000000000000003055 119.0
LYD1_k127_2301686_4 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000002923 92.0
LYD1_k127_2304847_0 Carbohydrate esterase, sialic acid-specific acetylesterase K05970 - 3.1.1.53 3.783e-219 716.0
LYD1_k127_2304847_1 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 2.792e-212 672.0
LYD1_k127_2304847_2 hydrolase family 30 K15924 - 3.2.1.136 0.00000000000000002522 85.0
LYD1_k127_2306814_0 Pyruvate kinase, alpha/beta domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 424.0
LYD1_k127_2306814_1 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 351.0
LYD1_k127_2306814_2 Bacterial membrane protein, YfhO - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 310.0
LYD1_k127_2306814_3 Aminotransferase class-V K03430 - 2.6.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000008947 261.0
LYD1_k127_2306814_4 Belongs to the pseudouridine synthase RsuA family K06178,K06183 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.19,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000008949 209.0
LYD1_k127_2306814_5 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00003,K01139 - 1.1.1.3,2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000000000000000009045 203.0
LYD1_k127_2306814_7 - - - - 0.0000000000000000000000001059 115.0
LYD1_k127_2306814_8 Domain of unknown function (DUF4154) - - - 0.00000000000000000007285 104.0
LYD1_k127_2306814_9 Transcriptional regulator PadR-like family K10947 - - 0.0007322 46.0
LYD1_k127_2311101_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 568.0
LYD1_k127_2311101_1 Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001607 263.0
LYD1_k127_2311101_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000001492 251.0
LYD1_k127_2311101_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000001491 189.0
LYD1_k127_2311101_4 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000988 174.0
LYD1_k127_2311101_5 peptidyl-tyrosine sulfation - - - 0.0000000002066 75.0
LYD1_k127_2316901_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 1.246e-230 729.0
LYD1_k127_2316901_2 COG1045 Serine acetyltransferase K00640 - 2.3.1.30 0.0000000000000003898 85.0
LYD1_k127_2316901_3 Smr protein MutS2 - - - 0.0000000000000007768 86.0
LYD1_k127_232015_0 type VI secretion protein K11900 - - 2.195e-259 805.0
LYD1_k127_232015_1 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 2.708e-235 743.0
LYD1_k127_232015_2 ImpE protein K11898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003816 304.0
LYD1_k127_232015_3 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 285.0
LYD1_k127_232015_4 ImpA, N-terminal, type VI secretion system K11902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002082 289.0
LYD1_k127_232015_5 TIGRFAM Type VI secretion system, lysozyme-related K11897 - - 0.00000000000000000000000000000000000000000000000000000003685 204.0
LYD1_k127_232015_6 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000006233 144.0
LYD1_k127_232015_7 This family consists of several bacterial proteins of K11903 - - 0.0000000000000000000000002327 111.0
LYD1_k127_232015_8 Forkhead associated domain K11894,K11913 - - 0.0000000000000000000000309 116.0
LYD1_k127_2322410_0 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000009933 140.0
LYD1_k127_233048_0 retrograde transport, endosome to Golgi K07095 - - 0.0000000000000000000000000000000000000007716 154.0
LYD1_k127_233048_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 0.00000000000000000000000000000000003583 145.0
LYD1_k127_233048_2 Membrane-bound metallopeptidase - - - 0.000000001407 68.0
LYD1_k127_233048_3 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000121 52.0
LYD1_k127_2334363_0 of the major facilitator superfamily K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003951 263.0
LYD1_k127_2334363_1 homoserine kinase K15635 - 5.4.2.12 0.0000000000000000000002561 100.0
LYD1_k127_2334363_2 COG0553 Superfamily II DNA RNA - - - 0.0003293 49.0
LYD1_k127_2336001_0 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.0000000000000000000000000000000000000000000000000000000000003174 215.0
LYD1_k127_2336001_1 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000001869 131.0
LYD1_k127_2336001_2 Methyltransferase domain - - - 0.0000000000002127 81.0
LYD1_k127_2341865_0 High confidence in function and specificity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 589.0
LYD1_k127_2341865_1 23S rRNA-intervening sequence protein - - - 0.0001347 51.0
LYD1_k127_2347457_0 heat shock protein 70 K04043 - - 2.768e-251 790.0
LYD1_k127_2347457_1 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001445 254.0
LYD1_k127_2347457_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000001931 145.0
LYD1_k127_2347457_3 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000005694 145.0
LYD1_k127_2347457_4 - - - - 0.0000000000000000000000000000004743 126.0
LYD1_k127_2347457_5 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000001158 116.0
LYD1_k127_2347457_6 Ig domain protein group 2 domain protein - - - 0.000005938 59.0
LYD1_k127_2354125_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 525.0
LYD1_k127_2354125_1 Prolyl oligopeptidase family K00433 - 1.11.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009604 475.0
LYD1_k127_2354125_2 PFAM coagulation factor 5 8 type K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007964 292.0
LYD1_k127_2354125_3 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006903 246.0
LYD1_k127_2354125_4 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.0000000002657 73.0
LYD1_k127_2354125_5 PFAM glycoside hydrolase family 8 K20542 - 3.2.1.4 0.0007381 52.0
LYD1_k127_2362064_0 Belongs to the ompA family K03286,K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 340.0
LYD1_k127_2362064_1 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001149 291.0
LYD1_k127_2362064_2 - - - - 0.000000000000000000000000000000000000000000000001328 194.0
LYD1_k127_2362064_3 LexA-binding, inner membrane-associated putative hydrolase K07038 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000003051 153.0
LYD1_k127_2362064_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000002393 72.0
LYD1_k127_2362064_5 Stigma-specific protein, Stig1 - GO:0000003,GO:0003006,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0042335,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458 - 0.00001168 58.0
LYD1_k127_2370060_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 572.0
LYD1_k127_2370060_1 Pfam:HxxPF_rpt - - - 0.0000000000000000000000000000000000000000000000003627 192.0
LYD1_k127_2370060_2 Integrase - - - 0.00000000000324 71.0
LYD1_k127_2373502_0 EcsC protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001381 273.0
LYD1_k127_2373502_2 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.00001948 55.0
LYD1_k127_237602_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 471.0
LYD1_k127_237602_1 transcription regulator containing HTH domain K18831 - - 0.0000000000000000000000000000000000000000001902 161.0
LYD1_k127_237602_2 DUF218 domain - - - 0.000000000000000000000000000006836 123.0
LYD1_k127_237602_3 protein conserved in bacteria K19166 - - 0.0000000000000000000000001997 116.0
LYD1_k127_2382464_0 Belongs to the xylose isomerase family K01805 - 5.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005426 605.0
LYD1_k127_2382464_1 FGGY family of carbohydrate kinases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 514.0
LYD1_k127_2382464_2 - K08223 - - 0.000000000000000000000000000001096 134.0
LYD1_k127_2382464_3 Glycosyltransferase family 87 K13671 - - 0.0001541 54.0
LYD1_k127_2386882_0 PFAM Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 315.0
LYD1_k127_2386882_1 Lipopolysaccharide kinase (Kdo/WaaP) family K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006651 302.0
LYD1_k127_2386882_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000001502 246.0
LYD1_k127_2386882_3 FHA domain - - - 0.0000000000000000000000000000000000000000000000003598 186.0
LYD1_k127_2386882_4 DHH family K07462 - - 0.0000000000000000000000000000000000000000006518 165.0
LYD1_k127_2390370_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000001043 274.0
LYD1_k127_2390370_1 Protein of unknown function (DUF1232) - - - 0.0000000000000000000000000000002412 131.0
LYD1_k127_2392633_0 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 7.265e-262 812.0
LYD1_k127_2392633_1 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 524.0
LYD1_k127_2392633_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008187 396.0
LYD1_k127_2392633_3 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 289.0
LYD1_k127_2392633_4 Belongs to the glycosyl hydrolase 32 family K01193 - 3.2.1.26 0.00000000000000000000000000000000000000000000000000000000000000005445 251.0
LYD1_k127_2392633_5 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000002508 132.0
LYD1_k127_2392633_6 Putative transposase - - - 0.0000000000008097 73.0
LYD1_k127_2397746_0 DEAD DEAH box helicase - - - 1.668e-318 995.0
LYD1_k127_2397746_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007085 549.0
LYD1_k127_2397746_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009614 356.0
LYD1_k127_2397746_3 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000004135 242.0
LYD1_k127_2397746_4 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000001037 232.0
LYD1_k127_2399027_0 Bacterial regulatory protein, Fis family K02584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 441.0
LYD1_k127_2399027_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 392.0
LYD1_k127_2399027_2 - - - - 0.00000000000000000000000000000000000000005958 166.0
LYD1_k127_2399027_3 - - - - 0.0000000000002908 72.0
LYD1_k127_2399027_4 - - - - 0.000000009016 66.0
LYD1_k127_2406890_0 Glycosyl transferase family 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 477.0
LYD1_k127_2406890_1 - - - - 0.0000000000000000000000009977 114.0
LYD1_k127_2416726_0 Peptidase inhibitor I9 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005415 463.0
LYD1_k127_2416726_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000009031 259.0
LYD1_k127_2416726_2 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.000000000000000000000000000000000000000000000000000000000001627 224.0
LYD1_k127_2417092_0 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 313.0
LYD1_k127_2417092_1 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.0000000000000000000000000000000006872 136.0
LYD1_k127_2417092_2 Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000007072 96.0
LYD1_k127_2417092_3 FHA domain - - - 0.0003162 49.0
LYD1_k127_2417092_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0003549 51.0
LYD1_k127_2422567_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 609.0
LYD1_k127_2422567_1 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008499 511.0
LYD1_k127_2422567_2 PFAM membrane bound O-acyl transferase MBOAT K19294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 451.0
LYD1_k127_2422567_3 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 329.0
LYD1_k127_2422567_4 SGNH hydrolase-like domain, acetyltransferase AlgX - - - 0.000000000000000005927 92.0
LYD1_k127_2422567_5 Phosphopantetheine attachment site K02078 - - 0.000000000000004375 82.0
LYD1_k127_2435478_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 403.0
LYD1_k127_2435478_1 cellulose binding K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000005623 224.0
LYD1_k127_2435478_2 Cysteine-rich secretory protein family K13449 - - 0.0000000000000000004771 99.0
LYD1_k127_2435478_3 Homologues of snake disintegrins - - - 0.000000000000001635 92.0
LYD1_k127_2436900_0 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000784 211.0
LYD1_k127_2436900_1 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.00000000000000000000000000000000000000000000000009225 183.0
LYD1_k127_2436900_2 SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity K03547 - - 0.0003859 52.0
LYD1_k127_2443902_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000003913 218.0
LYD1_k127_2443902_1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin - - - 0.00007118 52.0
LYD1_k127_245813_0 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 474.0
LYD1_k127_245813_1 Immunity protein 35 - - - 0.0000000000000000314 82.0
LYD1_k127_245813_3 - - - - 0.000009817 54.0
LYD1_k127_2467237_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006778 264.0
LYD1_k127_2467237_1 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.000000000000000000000000000002824 123.0
LYD1_k127_2467237_2 Bacterial membrane protein, YfhO - - - 0.00000000000000000000000003869 126.0
LYD1_k127_2504364_0 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 0.0 1053.0
LYD1_k127_2504364_1 Cephalosporin hydroxylase - - - 0.000000000000000000000000000000000000000000000000001733 194.0
LYD1_k127_2504364_2 - - - - 0.0000000000000000000000000000000000000000000000004666 187.0
LYD1_k127_2504364_3 PFAM Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000003454 136.0
LYD1_k127_2504472_0 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.000000000000000000000000000000000000000000000000000000003852 204.0
LYD1_k127_2504472_1 Right handed beta helix region - - - 0.00000000000000000000000000000000000000000000000000000001379 209.0
LYD1_k127_2510537_0 Protein of unknown function (DUF763) K09003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 494.0
LYD1_k127_2510537_1 - - - - 0.000000000001734 75.0
LYD1_k127_2510537_2 Neisseria PilC beta-propeller domain K02674 - - 0.0003777 48.0
LYD1_k127_2515332_0 PFAM CheB methylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 318.0
LYD1_k127_2515332_1 Citrate transporter K03893 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003557 278.0
LYD1_k127_2515332_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001096 276.0
LYD1_k127_2515332_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000001237 206.0
LYD1_k127_2515332_4 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000008161 195.0
LYD1_k127_2515332_5 phosphoenolpyruvate carboxylase activity K01595 - 4.1.1.31 0.000000000000000000000000000000001578 145.0
LYD1_k127_2515332_7 Sodium/hydrogen exchanger family - - - 0.000000002003 66.0
LYD1_k127_2515332_8 PQQ enzyme repeat K05889,K12132 - 1.1.2.6,2.7.11.1 0.0005209 51.0
LYD1_k127_2515332_9 PQQ-like domain - - - 0.0006909 51.0
LYD1_k127_2518403_0 PFAM glycosyl transferase family 51 K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 589.0
LYD1_k127_2518403_1 Family membership - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004209 285.0
LYD1_k127_2518403_2 - - - - 0.000000000000000000000000000007635 129.0
LYD1_k127_2528443_0 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 434.0
LYD1_k127_2528443_1 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000001103 227.0
LYD1_k127_2528443_2 PIN domain - - - 0.00000000000000000000000000000000000000001584 156.0
LYD1_k127_2528443_3 Belongs to the glycosyl hydrolase family 6 - - - 0.0000000000000000000000000000000000002875 158.0
LYD1_k127_2532654_0 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 426.0
LYD1_k127_2532654_1 General secretion pathway protein C K02452 - - 0.000000000000004773 83.0
LYD1_k127_2534853_0 FHA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 349.0
LYD1_k127_2534853_1 PGAP1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000562 208.0
LYD1_k127_2534853_2 AAA ATPase domain - - - 0.00000002784 67.0
LYD1_k127_254558_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005911 426.0
LYD1_k127_254558_1 oxidoreductase activity K07114 - - 0.00000000000000000000000000000006406 139.0
LYD1_k127_254558_2 PFAM PEGA domain - - - 0.00000002411 63.0
LYD1_k127_2554893_0 hydrogenase large subunit K00436 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007988 296.0
LYD1_k127_2554893_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K17999 - 1.12.1.4,1.6.5.3 0.000000000000000000000000000000000000000000000000002479 187.0
LYD1_k127_2554893_2 hydrogenase maturation protease - - - 0.000000000000000000000000000000001764 135.0
LYD1_k127_2554893_3 Histidine kinase - - - 0.000000000000000000000000000000006588 143.0
LYD1_k127_2554893_4 response regulator receiver - - - 0.00000000000000004722 88.0
LYD1_k127_2566467_0 oligosaccharyl transferase activity - - - 0.00000000001341 76.0
LYD1_k127_2566467_1 Pfam:DUF2029 - - - 0.000000004106 68.0
LYD1_k127_2566467_2 - - - - 0.0000005163 55.0
LYD1_k127_2573533_0 alpha-L-arabinofuranosidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001052 266.0
LYD1_k127_2574014_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 7.331e-255 800.0
LYD1_k127_2574014_1 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 404.0
LYD1_k127_2574014_12 TPR repeat - - - 0.0009762 49.0
LYD1_k127_2574014_2 Adventurous gliding motility - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002102 248.0
LYD1_k127_2574014_3 3-methyl-2-oxobutanoate hydroxymethyltransferase activity K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000008269 223.0
LYD1_k127_2574014_4 MotA/TolQ/ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000000003389 220.0
LYD1_k127_2574014_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000001091 194.0
LYD1_k127_2574014_6 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000004185 136.0
LYD1_k127_2574014_7 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000437 123.0
LYD1_k127_2574014_8 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000002193 103.0
LYD1_k127_2574014_9 domain, Protein - - - 0.00000000000000000001027 107.0
LYD1_k127_2587525_0 DHH family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 297.0
LYD1_k127_2587525_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003357 299.0
LYD1_k127_2587525_2 - - - - 0.00000000000000000000000000000000000000000000000000186 193.0
LYD1_k127_2587525_5 Sigma-70 region 2 K03088 - - 0.000000007269 64.0
LYD1_k127_2587525_6 Inosine-uridine preferring nucleoside hydrolase - - - 0.0005726 51.0
LYD1_k127_2592478_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 1.44e-229 729.0
LYD1_k127_2596865_0 Sulfatase - - - 2.658e-267 839.0
LYD1_k127_2596865_1 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 356.0
LYD1_k127_2596865_2 pyruvate-flavodoxin oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 342.0
LYD1_k127_2596865_3 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007357 267.0
LYD1_k127_2596865_4 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000000000001966 256.0
LYD1_k127_2596865_5 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000001362 224.0
LYD1_k127_2596865_6 PFAM Uncharacterised protein family (UPF0153) - - - 0.00000000000000000000000000000003686 133.0
LYD1_k127_2596865_7 Bacterial membrane protein, YfhO - - - 0.0000000000004553 83.0
LYD1_k127_2596865_8 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000002031 73.0
LYD1_k127_2607712_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 353.0
LYD1_k127_2607712_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000001046 273.0
LYD1_k127_2607712_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000008073 234.0
LYD1_k127_2607712_3 PFAM PHP domain protein K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000000000000000001448 226.0
LYD1_k127_2607712_4 biotin lipoyl attachment domain-containing protein K02160 - - 0.00000000000000005932 85.0
LYD1_k127_2607712_5 - - - - 0.0000000000001183 81.0
LYD1_k127_2610904_0 SMART serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003104 263.0
LYD1_k127_2610904_1 Glycosyl hydrolases family 43 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002428 257.0
LYD1_k127_2610904_2 Belongs to the P-Pant transferase superfamily K02362,K06133 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008897,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009366,GO:0009712,GO:0009713,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 6.3.2.14 0.00000000000000000000000000000000000000001425 173.0
LYD1_k127_2614114_0 TIGRFAM Hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.00000000000000000000000000000000000000000000000000000000000001158 239.0
LYD1_k127_2614114_1 Tetratricopeptide repeat - - - 0.00000000000000000003517 97.0
LYD1_k127_2619280_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000112 235.0
LYD1_k127_2619280_1 Histidine kinase - - - 0.000000000000000000000000000002513 139.0
LYD1_k127_2619280_2 cellulose binding - - - 0.0000000000000000000000001602 120.0
LYD1_k127_2627415_0 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 405.0
LYD1_k127_2627415_1 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 341.0
LYD1_k127_2627415_10 TIGRFAM hydrogenase maturation protease K03605 - - 0.00000000000000004325 89.0
LYD1_k127_2627415_11 OmpA family K03286 - - 0.0000000000005583 79.0
LYD1_k127_2627415_12 4Fe-4S binding domain - - - 0.00000000002038 74.0
LYD1_k127_2627415_13 Glycosyl transferase K00728 - 2.4.1.109 0.00000000004031 74.0
LYD1_k127_2627415_14 Glycosyl transferase K00728 - 2.4.1.109 0.000000001336 68.0
LYD1_k127_2627415_15 biological adhesion K04005,K04011,K04012,K17495 GO:0001701,GO:0001775,GO:0001846,GO:0001847,GO:0001848,GO:0001851,GO:0001855,GO:0001861,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002429,GO:0002430,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002673,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002712,GO:0002713,GO:0002757,GO:0002764,GO:0002768,GO:0002819,GO:0002820,GO:0002822,GO:0002823,GO:0002889,GO:0002890,GO:0002920,GO:0002921,GO:0002923,GO:0002924,GO:0003674,GO:0003676,GO:0003677,GO:0004875,GO:0004877,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008283,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009897,GO:0009986,GO:0009987,GO:0010466,GO:0010468,GO:0010604,GO:0010605,GO:0010629,GO:0010950,GO:0010951,GO:0010952,GO:0010955,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0019222,GO:0023052,GO:0030097,GO:0030098,GO:0030141,GO:0030154,GO:0030162,GO:0030183,GO:0030449,GO:0030450,GO:0030451,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032991,GO:0036230,GO:0038023,GO:0042100,GO:0042113,GO:0042119,GO:0042802,GO:0042803,GO:0043009,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043235,GO:0043299,GO:0043312,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045055,GO:0045088,GO:0045321,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045824,GO:0045861,GO:0045862,GO:0045916,GO:0045957,GO:0045959,GO:0046649,GO:0046651,GO:0046903,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050727,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051336,GO:0051345,GO:0051346,GO:0051716,GO:0052547,GO:0052548,GO:0060089,GO:0060255,GO:0065007,GO:0065009,GO:0070613,GO:0070661,GO:0070820,GO:0071944,GO:0080090,GO:0080134,GO:0097159,GO:0097708,GO:0098552,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003,GO:1900003,GO:1900004,GO:1900005,GO:1901363,GO:1902105,GO:1902571,GO:1902572,GO:1902573,GO:1903317,GO:1903318,GO:1903706,GO:2000026,GO:2000257,GO:2000258 - 0.000009701 59.0
LYD1_k127_2627415_2 Belongs to the glycosyl hydrolase 26 family K01218 - 3.2.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 329.0
LYD1_k127_2627415_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006313 261.0
LYD1_k127_2627415_4 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000002501 190.0
LYD1_k127_2627415_5 Belongs to the glycosyl hydrolase 12 (cellulase H) family K01179 - 3.2.1.4 0.00000000000000000000000000000126 139.0
LYD1_k127_2627415_6 PFAM Roadblock LC7 family protein K07131 - - 0.00000000000000000000000000001864 121.0
LYD1_k127_2627415_7 4-vinyl reductase, 4VR K07013,K17763 - - 0.000000000000000000000000001053 125.0
LYD1_k127_2627415_8 phosphorelay signal transduction system - - - 0.00000000000000000000000003124 120.0
LYD1_k127_263114_0 Transcriptional regulator with HTH domain and aminotransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005816 341.0
LYD1_k127_263114_1 4Fe-4S dicluster domain K03389,K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000004735 210.0
LYD1_k127_263114_2 synthase - - - 0.00000000000000000000000000000000000000000000000000001673 206.0
LYD1_k127_263114_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000007952 177.0
LYD1_k127_263114_4 Involved in the tonB-independent uptake of proteins - - - 0.0000000000005671 82.0
LYD1_k127_263114_5 TPR repeat - - - 0.0004736 50.0
LYD1_k127_263114_6 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0007587 49.0
LYD1_k127_2634699_0 UTP--glucose-1-phosphate uridylyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 407.0
LYD1_k127_2634699_1 polysaccharide export K01991 - - 0.0000000000000000000000000000000000000000001104 169.0
LYD1_k127_2634699_2 Transposase - - - 0.000000000000000000000000000000000000000001724 162.0
LYD1_k127_2634699_3 PIN domain - - - 0.0000001305 62.0
LYD1_k127_2634699_4 PilZ domain K07001,K07003,K10914 - - 0.0000003102 57.0
LYD1_k127_2634699_5 positive regulation of growth K01081 - 3.1.3.5 0.0001398 49.0
LYD1_k127_2634699_6 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040008,GO:0044464,GO:0045926,GO:0048519,GO:0050789,GO:0065007,GO:0071944 - 0.0001728 51.0
LYD1_k127_2641779_0 ABC transporter transmembrane region K06147 - - 1.963e-196 630.0
LYD1_k127_2641779_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 537.0
LYD1_k127_2641779_2 TrkA-C domain K03455 - - 0.000000000000000002258 90.0
LYD1_k127_2645285_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 574.0
LYD1_k127_2645285_1 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005784 488.0
LYD1_k127_2645285_10 PD-(D/E)XK nuclease superfamily - - - 0.00000002188 61.0
LYD1_k127_2645285_2 NADPH:quinone reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 388.0
LYD1_k127_2645285_3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005487 295.0
LYD1_k127_2645285_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000134 273.0
LYD1_k127_2645285_5 Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus K07261 GO:0000270,GO:0003674,GO:0003824,GO:0004175,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016787,GO:0019538,GO:0030203,GO:0034645,GO:0042221,GO:0042493,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0050896,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000002973 248.0
LYD1_k127_2645285_6 Alpha/beta hydrolase family K03928 - 3.1.1.1 0.00000000000000000000000000000000000006676 162.0
LYD1_k127_2645285_7 Protein serine threonine phosphatase K20074 - 3.1.3.16 0.000000000000000000000001077 109.0
LYD1_k127_2645285_8 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000001682 86.0
LYD1_k127_2645285_9 metallopeptidase activity - - - 0.000000004726 69.0
LYD1_k127_2651916_1 Methyltransferase domain - - - 0.000000000000000000000000008606 115.0
LYD1_k127_2656193_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000454 392.0
LYD1_k127_2656193_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0000028,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 293.0
LYD1_k127_2656193_10 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000006687 145.0
LYD1_k127_2656193_11 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000001228 119.0
LYD1_k127_2656193_12 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000003572 123.0
LYD1_k127_2656193_13 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000006967 109.0
LYD1_k127_2656193_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000001142 104.0
LYD1_k127_2656193_15 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000672 94.0
LYD1_k127_2656193_16 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000009978 93.0
LYD1_k127_2656193_17 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000003255 77.0
LYD1_k127_2656193_18 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000005868 58.0
LYD1_k127_2656193_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000001127 243.0
LYD1_k127_2656193_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000001842 231.0
LYD1_k127_2656193_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000002179 207.0
LYD1_k127_2656193_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000005029 208.0
LYD1_k127_2656193_6 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000006421 188.0
LYD1_k127_2656193_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000008945 164.0
LYD1_k127_2656193_8 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000008873 156.0
LYD1_k127_2656193_9 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000004856 145.0
LYD1_k127_2671521_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 4.665e-204 648.0
LYD1_k127_2671521_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002481 289.0
LYD1_k127_2671521_2 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000003457 228.0
LYD1_k127_2671521_3 oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000001351 166.0
LYD1_k127_2671521_4 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000003969 90.0
LYD1_k127_2671521_5 TPR repeat - - - 0.00004585 53.0
LYD1_k127_2671521_6 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0001825 54.0
LYD1_k127_2677551_0 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002635 286.0
LYD1_k127_2677551_1 Domain of unknown function (DUF4150) - - - 0.0000000000000000000000000000000002341 153.0
LYD1_k127_2677551_2 - - - - 0.0000000000000000005786 101.0
LYD1_k127_2677551_3 - - - - 0.0000000000000001149 91.0
LYD1_k127_2678091_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 407.0
LYD1_k127_2678091_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 319.0
LYD1_k127_2678091_2 PQQ enzyme repeat K17713 - - 0.0000000000000000000000000000000000000000000000000000000000006024 224.0
LYD1_k127_2678091_3 PilZ domain - - - 0.0000000000000000000000004377 114.0
LYD1_k127_2678091_4 DJ-1/PfpI family - - - 0.00000000000006282 75.0
LYD1_k127_2679473_0 EcoEI R protein C-terminal K01153 - 3.1.21.3 0.0 1241.0
LYD1_k127_2679473_1 PFAM N-6 DNA methylase K03427 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 314.0
LYD1_k127_2679473_2 Type I restriction modification DNA specificity domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003894 250.0
LYD1_k127_2686607_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000312 283.0
LYD1_k127_2686607_1 Fic/DOC family - - - 0.0000000000000000000000000000000000000000000000000007002 193.0
LYD1_k127_2686607_2 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000006057 59.0
LYD1_k127_2686607_3 Cell division protein FtsL - - - 0.000417 49.0
LYD1_k127_2688681_0 PFAM glycoside hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 533.0
LYD1_k127_2688681_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 372.0
LYD1_k127_2688681_2 Fructosamine kinase - GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0044237 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000825 312.0
LYD1_k127_2688681_3 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000001578 194.0
LYD1_k127_2688681_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000001425 177.0
LYD1_k127_2688681_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000007685 146.0
LYD1_k127_2688681_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000001593 146.0
LYD1_k127_2688681_7 Exonuclease of the beta-lactamase fold involved in RNA processing K07577 - - 0.0000000000000000000000000001262 129.0
LYD1_k127_2688681_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.00000001497 65.0
LYD1_k127_2689822_0 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000004457 227.0
LYD1_k127_2703615_0 Cation efflux family - - - 0.00000000000000000000000000000000000000000000001267 186.0
LYD1_k127_2703615_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.00000000000000000000000000000782 136.0
LYD1_k127_2703615_2 - - - - 0.00007723 49.0
LYD1_k127_2708252_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 1.976e-268 835.0
LYD1_k127_2708252_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 2.812e-201 639.0
LYD1_k127_2708252_2 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 470.0
LYD1_k127_271240_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 3.079e-253 792.0
LYD1_k127_271240_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 372.0
LYD1_k127_271240_2 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000221 188.0
LYD1_k127_271240_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000000000000009694 143.0
LYD1_k127_271240_4 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000002129 117.0
LYD1_k127_271240_5 - - - - 0.0004888 47.0
LYD1_k127_2714867_0 Peptidase C14, caspase catalytic - - - 0.0000000000000000000000000000000000000000000000000000006203 215.0
LYD1_k127_2714867_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000001186 104.0
LYD1_k127_2714867_2 AntiSigma factor - - - 0.000000000000003787 85.0
LYD1_k127_2716548_0 PFAM Smr protein MutS2 - - - 0.0000000000000000000000000000002703 125.0
LYD1_k127_2716548_1 pathogenesis - - - 0.000000000000000000000000004005 124.0
LYD1_k127_2716548_2 PFAM Chromate transporter K07240 - - 0.0000000000005059 80.0
LYD1_k127_2716548_3 Short-chain dehydrogenase reductase Sdr - - - 0.0000000002899 61.0
LYD1_k127_2719219_0 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 554.0
LYD1_k127_2719219_1 Iron-containing alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 389.0
LYD1_k127_2719219_2 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000007126 209.0
LYD1_k127_2719219_4 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000005529 132.0
LYD1_k127_2719219_6 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.00000000000002011 83.0
LYD1_k127_2726296_0 Stage II sporulation protein M - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003991 338.0
LYD1_k127_2726296_1 RDD family - - - 0.0000000000000000000000000000000000000000000002652 173.0
LYD1_k127_2726296_2 - - - - 0.00000000000000000000000000000000000000001896 168.0
LYD1_k127_273338_0 PilZ domain - - - 0.000000000000000000003819 100.0
LYD1_k127_273338_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000001552 62.0
LYD1_k127_273338_2 CarboxypepD_reg-like domain - - - 0.0000001119 64.0
LYD1_k127_2736894_0 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001414 271.0
LYD1_k127_2736894_1 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000004442 185.0
LYD1_k127_2736894_2 Protein of unknown function (DUF2442) - - - 0.00000000000248 74.0
LYD1_k127_2739279_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 362.0
LYD1_k127_2739279_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 311.0
LYD1_k127_2739279_2 - - - - 0.00000000000000000000000000000000000000000000000000008414 202.0
LYD1_k127_2739279_3 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000001407 186.0
LYD1_k127_2742779_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 334.0
LYD1_k127_2742779_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000655 265.0
LYD1_k127_2742779_2 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001239 251.0
LYD1_k127_2742779_3 Ricin-type beta-trefoil - - - 0.00000000000000000000000000000000000000000008619 182.0
LYD1_k127_2744887_0 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 567.0
LYD1_k127_2744887_1 Belongs to the methyltransferase superfamily K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 387.0
LYD1_k127_2744887_2 Putative metal-binding motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 331.0
LYD1_k127_2744887_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 290.0
LYD1_k127_2744887_4 nucleotide metabolic process - - - 0.00000000000000000000000000000000000000000000000000000000376 210.0
LYD1_k127_2744887_5 NAT, N-acetyltransferase, of N-acetylglutamate synthase K12659,K22478 - 1.2.1.38,2.3.1.1,2.7.2.8 0.00000000000000000000000000000000000000000000003593 192.0
LYD1_k127_2744887_6 - - - - 0.00000000000000000000000001814 114.0
LYD1_k127_2746082_0 N-acetylmuramoyl-L-alanine amidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004676 283.0
LYD1_k127_2746082_1 Forkhead associated domain - - - 0.0002292 53.0
LYD1_k127_2746434_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 3.806e-222 717.0
LYD1_k127_2746434_1 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003535 520.0
LYD1_k127_2746434_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000001391 235.0
LYD1_k127_2746434_3 Protein of unknown function (DUF503) K09764 - - 0.0000000000000005724 89.0
LYD1_k127_2746434_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000001183 70.0
LYD1_k127_2746434_5 Protein of unknown function (DUF448) K07742 - - 0.000002813 54.0
LYD1_k127_2748164_0 cellulose binding - - - 9.173e-213 685.0
LYD1_k127_2748164_1 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 379.0
LYD1_k127_2748164_2 cellulase activity K01183 - 3.2.1.14 0.00001253 55.0
LYD1_k127_2748251_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 322.0
LYD1_k127_2748251_1 CBD_II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002368 276.0
LYD1_k127_2748251_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009552 273.0
LYD1_k127_2748251_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000003418 124.0
LYD1_k127_2748251_4 Polysaccharide lyase - - - 0.00000000000000000008127 104.0
LYD1_k127_2748251_5 domain, Protein - - - 0.000001287 60.0
LYD1_k127_2748251_6 - - - - 0.000004961 57.0
LYD1_k127_2762728_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004241 453.0
LYD1_k127_2762728_1 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000246 254.0
LYD1_k127_2762728_2 peptidase U62 modulator of DNA gyrase - - - 0.0000000000000000000000000001402 125.0
LYD1_k127_2777486_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 561.0
LYD1_k127_2777486_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 333.0
LYD1_k127_2777486_2 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000002727 182.0
LYD1_k127_2779871_0 beta-galactosidase activity K01190 - 3.2.1.23 0.0 1104.0
LYD1_k127_2779871_1 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.00000004069 65.0
LYD1_k127_2780430_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005774 577.0
LYD1_k127_2780430_1 Ferrous iron transport protein B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 542.0
LYD1_k127_2780430_2 Beta propeller domain - - - 0.0000000000000000000000000000000000000003946 173.0
LYD1_k127_2780430_3 Methyltransferase domain K03183 - 2.1.1.163,2.1.1.201 0.000000000004456 77.0
LYD1_k127_2780430_4 Transposase - - - 0.000005122 53.0
LYD1_k127_2780430_5 - - - - 0.00003284 48.0
LYD1_k127_2787161_0 Aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009872 502.0
LYD1_k127_2787161_1 DNA Topoisomerase IV K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 388.0
LYD1_k127_2787161_2 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005902 252.0
LYD1_k127_2787161_3 - - - - 0.0000000000008586 72.0
LYD1_k127_2797155_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 3.625e-211 665.0
LYD1_k127_2797155_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 2.75e-198 630.0
LYD1_k127_2797155_2 3-isopropylmalate dehydrogenase activity K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 532.0
LYD1_k127_2797155_3 Protein of unknown function DUF99 K09120 - - 0.00000000000000000000000000000000000000000000000000001405 205.0
LYD1_k127_2797155_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000001624 160.0
LYD1_k127_2797155_6 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000004559 132.0
LYD1_k127_2797155_7 PilZ domain - - - 0.0000000000000000006593 92.0
LYD1_k127_2797155_8 OmpA family - - - 0.00002748 59.0
LYD1_k127_2816019_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008621 474.0
LYD1_k127_2816019_1 PA14 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 425.0
LYD1_k127_2816019_10 multi-organism process K20628 GO:0001871,GO:0003674,GO:0005488,GO:0008150,GO:0009653,GO:0030246,GO:0030247,GO:0030248,GO:0030587,GO:0031150,GO:0031153,GO:0031154,GO:0031288,GO:0032502,GO:0036360,GO:0048856,GO:0051703,GO:0051704,GO:0090702,GO:0099120 - 0.00002653 56.0
LYD1_k127_2816019_2 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001904 267.0
LYD1_k127_2816019_3 Esterase, phb depolymerase family K03932 - - 0.000000000000000000000000000000000000000000000000000000001182 219.0
LYD1_k127_2816019_4 ABC transporter K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000009529 191.0
LYD1_k127_2816019_5 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000009783 162.0
LYD1_k127_2816019_6 ABC-type transport system involved in cytochrome c biogenesis permease component K02194 - - 0.00000000000000000000000001446 123.0
LYD1_k127_2816019_7 peptidyl-tyrosine sulfation - - - 0.00000000000000000000001333 111.0
LYD1_k127_2816019_8 sequence-specific DNA binding K02099,K13529,K15051 - 3.2.2.21 0.000000000000000126 92.0
LYD1_k127_2816019_9 GGDEF family - - - 0.000003708 59.0
LYD1_k127_2817464_0 sigma factor activity K02405 - - 0.00000000000000000000000000000000000002501 153.0
LYD1_k127_2817464_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000000000000000000000000000003239 151.0
LYD1_k127_2817464_2 Secretory protein of YscJ/FliF family K03222 - - 0.000000000000000000000000000000001142 150.0
LYD1_k127_2817464_3 Phage shock protein A, PspA K03969 - - 0.0000000000000000000000000000007735 130.0
LYD1_k127_2820578_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 390.0
LYD1_k127_2820578_1 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 299.0
LYD1_k127_2820578_2 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000005319 63.0
LYD1_k127_2821542_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009705 531.0
LYD1_k127_2821542_1 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001613 265.0
LYD1_k127_2821542_2 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000001531 212.0
LYD1_k127_2821542_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000002312 106.0
LYD1_k127_2825470_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 392.0
LYD1_k127_2825470_1 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 376.0
LYD1_k127_2825470_2 - - - - 0.00000000000000000000000000000000000000000000000000002002 199.0
LYD1_k127_2825470_3 Domain of unknown function (DUF4145) - - - 0.0000000000000000000000000000000000000000000000001053 184.0
LYD1_k127_2825470_4 nucleic acid-binding protein contains PIN domain - - - 0.0000002374 58.0
LYD1_k127_2828292_0 pyridine nucleotide-disulfide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007718 587.0
LYD1_k127_2828292_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 395.0
LYD1_k127_2828292_2 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000002734 199.0
LYD1_k127_2828292_3 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000006942 138.0
LYD1_k127_2828292_4 DnaJ molecular chaperone homology domain - - - 0.0000000000000003375 84.0
LYD1_k127_2828292_5 Domain of unknown function (DUF4178) - - - 0.00000004046 63.0
LYD1_k127_2828292_6 cytochrome C peroxidase - - - 0.000005992 53.0
LYD1_k127_2831690_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000006637 253.0
LYD1_k127_2831690_1 copper ion binding K05810 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914 - 0.0000000000000000000000004004 108.0
LYD1_k127_2831751_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002552 293.0
LYD1_k127_2831751_2 Cysteine rich repeat - - - 0.0000665 55.0
LYD1_k127_2834289_0 Rieske [2Fe-2S] domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 405.0
LYD1_k127_2834289_1 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004585 314.0
LYD1_k127_2834289_2 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 297.0
LYD1_k127_2834289_3 Transglycosylase associated protein - - - 0.0000000000000000000000001817 108.0
LYD1_k127_2834289_4 Peptidoglycan-binding domain 1 protein - - - 0.00000000004587 73.0
LYD1_k127_2834289_5 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0003158 49.0
LYD1_k127_2839736_0 HMGL-like K01666 - 4.1.3.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 437.0
LYD1_k127_286161_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 404.0
LYD1_k127_286161_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007551 357.0
LYD1_k127_286161_10 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000008415 109.0
LYD1_k127_286161_11 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000004136 98.0
LYD1_k127_286161_12 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000138 76.0
LYD1_k127_286161_13 Ribosomal L29 protein K02904 - - 0.00003901 51.0
LYD1_k127_286161_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000001725 261.0
LYD1_k127_286161_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000006126 204.0
LYD1_k127_286161_4 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000001586 201.0
LYD1_k127_286161_5 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000003746 205.0
LYD1_k127_286161_6 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000009914 186.0
LYD1_k127_286161_7 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000001529 149.0
LYD1_k127_286161_8 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000002829 125.0
LYD1_k127_286161_9 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 - - 0.00000000000000000000000000001152 127.0
LYD1_k127_2862784_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1021.0
LYD1_k127_2862784_1 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005174 442.0
LYD1_k127_2862784_2 Reprolysin (M12B) family zinc metalloprotease - - - 0.000000000000000000000000000000004324 149.0
LYD1_k127_2862784_3 cheY-homologous receiver domain - - - 0.00000000000000000000000000006071 131.0
LYD1_k127_2862784_4 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000008527 102.0
LYD1_k127_2862784_5 sequence-specific DNA binding - - - 0.000000000000003418 83.0
LYD1_k127_2862784_7 Hemerythrin HHE cation binding domain K07216 - - 0.00013 51.0
LYD1_k127_2874131_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000002709 234.0
LYD1_k127_2874131_1 PFAM PSP1 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000004023 239.0
LYD1_k127_2874131_2 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000002895 171.0
LYD1_k127_2874131_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000001423 155.0
LYD1_k127_2874131_4 PspA/IM30 family K03969 - - 0.000000000000000000000000003572 117.0
LYD1_k127_2875977_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000266 151.0
LYD1_k127_2875977_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000007423 123.0
LYD1_k127_2875977_2 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000002481 85.0
LYD1_k127_2877401_0 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009797 524.0
LYD1_k127_2877401_1 Belongs to the SAICAR synthetase family K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 398.0
LYD1_k127_2877401_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620,K00930 - 2.3.1.1,2.3.1.35,2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 328.0
LYD1_k127_2877401_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145,K05829 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 309.0
LYD1_k127_2877401_4 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000000000000000000001669 175.0
LYD1_k127_2878579_0 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0 1130.0
LYD1_k127_2878579_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007243 410.0
LYD1_k127_2878579_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005451 376.0
LYD1_k127_2878579_3 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 363.0
LYD1_k127_2878579_4 PIN domain - - - 0.00000000000000000000000000000000000000000402 162.0
LYD1_k127_2878579_5 Belongs to the FPP GGPP synthase family K02523 GO:0003674,GO:0003824,GO:0004659,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009108,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0042180,GO:0042181,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663 2.5.1.90 0.00000000000000000000005398 102.0
LYD1_k127_2878579_6 positive regulation of growth K01081 - 3.1.3.5 0.000000000000000004345 85.0
LYD1_k127_288028_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000007028 192.0
LYD1_k127_288028_1 CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000001646 121.0
LYD1_k127_2881034_0 Involved in the tonB-independent uptake of proteins K03641 - - 1.213e-251 789.0
LYD1_k127_2881034_1 Glycosyl hydrolases family 8 K15531 - 3.2.1.156 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 422.0
LYD1_k127_2881034_2 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000001069 253.0
LYD1_k127_2881034_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000000000002721 211.0
LYD1_k127_2881034_6 Protein conserved in bacteria K09955 - - 0.000001909 56.0
LYD1_k127_2887590_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 331.0
LYD1_k127_2887590_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000006163 229.0
LYD1_k127_2887590_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000008197 113.0
LYD1_k127_2887590_3 PFAM Polysulphide reductase, NrfD K00185 - - 0.000643 53.0
LYD1_k127_2889337_0 radical SAM K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003835 583.0
LYD1_k127_2889337_1 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000004881 193.0
LYD1_k127_2896821_0 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001582 269.0
LYD1_k127_2896821_1 iron ion homeostasis - - - 0.000000000000000000001972 109.0
LYD1_k127_2896821_3 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000006363 78.0
LYD1_k127_2908530_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000001737 225.0
LYD1_k127_2908530_1 zinc-ribbon domain - - - 0.00000000000478 78.0
LYD1_k127_2914529_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 399.0
LYD1_k127_2914529_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000009521 211.0
LYD1_k127_2914529_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000001395 174.0
LYD1_k127_2914529_3 MafB19-like deaminase - - - 0.00000000000000000000000000000000000009382 153.0
LYD1_k127_2926388_0 Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04068 - 1.97.1.4 0.00000000000000000000000000000000000000000000000007869 186.0
LYD1_k127_2926388_1 pyrroloquinoline quinone binding - - - 0.0000000000000000000000001049 124.0
LYD1_k127_2926388_2 Protein of unknown function (DUF3494) - - - 0.000000000000007309 89.0
LYD1_k127_2926388_3 Protein of unknown function (DUF2997) - - - 0.0003961 46.0
LYD1_k127_2932583_0 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 328.0
LYD1_k127_2932583_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000002708 193.0
LYD1_k127_2941377_0 Nickel-dependent hydrogenase K14126 - 1.8.98.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007003 631.0
LYD1_k127_2941377_1 NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 382.0
LYD1_k127_2941377_2 PFAM methyl-viologen-reducing hydrogenase delta subunit K14127 - 1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000005995 227.0
LYD1_k127_2941377_3 FAD binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000001641 124.0
LYD1_k127_2941377_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000006454 117.0
LYD1_k127_2941377_5 spore germination K03605 - - 0.000000000000000000001106 111.0
LYD1_k127_2941377_6 Putative zinc-finger - - - 0.0008134 46.0
LYD1_k127_2947179_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 441.0
LYD1_k127_2947179_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000003981 265.0
LYD1_k127_2947179_2 hydrolases of the HAD superfamily - - - 0.000000000000000000001126 102.0
LYD1_k127_2947179_3 Belongs to the UPF0235 family K09131 - - 0.00000000000000000001543 94.0
LYD1_k127_2951733_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 333.0
LYD1_k127_2951733_1 Outer membrane efflux protein K12543 - - 0.00000000000000000000000000000005569 143.0
LYD1_k127_2953235_0 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000003529 202.0
LYD1_k127_2953235_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000001099 168.0
LYD1_k127_2953235_2 Endoribonuclease L-PSP K09021,K09022 GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009987,GO:0017144,GO:0019740,GO:0019860,GO:0034641,GO:0042737,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0046113,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575 3.5.99.10 0.0000000000000000000000000000000000000003371 156.0
LYD1_k127_2953235_3 domain protein K20276 - - 0.0000000000000000000003566 111.0
LYD1_k127_2953235_4 - - - - 0.00000000000004272 76.0
LYD1_k127_2953235_5 Zinc-dependent metalloprotease - - - 0.0000000000004685 80.0
LYD1_k127_2953235_6 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000007469 76.0
LYD1_k127_2953235_7 Pectate lyase - - - 0.000000001188 69.0
LYD1_k127_2953235_8 Protein of unknown function (DUF721) - - - 0.00001808 52.0
LYD1_k127_2954171_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 9.388e-292 914.0
LYD1_k127_2954171_1 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta) - - - 2.968e-218 689.0
LYD1_k127_2954171_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003059 494.0
LYD1_k127_2954171_4 cheY-homologous receiver domain - - - 0.0000000000000231 80.0
LYD1_k127_2954171_6 DnaK suppressor protein - - - 0.000000000003918 74.0
LYD1_k127_2954171_7 Integrase - - - 0.0000001626 53.0
LYD1_k127_2954171_8 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0004861 48.0
LYD1_k127_2967432_0 Domain of unknown function (DUF4034) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 342.0
LYD1_k127_2967432_1 Protein-arginine deiminase (PAD) K01481 - 3.5.3.15 0.0000000002739 66.0
LYD1_k127_2967432_2 alkaline phosphatase activity - - - 0.000000007193 69.0
LYD1_k127_2967432_3 Arylsulfotransferase (ASST) - - - 0.00000001437 68.0
LYD1_k127_2967432_5 EF-hand, calcium binding motif - - - 0.0005863 49.0
LYD1_k127_2967432_6 Arylsulfotransferase Ig-like domain K01023 - 2.8.2.22 0.0009444 49.0
LYD1_k127_297874_0 Elongation factor Tu domain 2 K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007453 608.0
LYD1_k127_297874_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000775 480.0
LYD1_k127_297874_2 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 477.0
LYD1_k127_297874_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 430.0
LYD1_k127_297874_4 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000009603 209.0
LYD1_k127_297874_5 transcriptional regulator - - - 0.00000000000000000000000000001601 123.0
LYD1_k127_297988_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000162 272.0
LYD1_k127_297988_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000007604 193.0
LYD1_k127_297988_2 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000001096 136.0
LYD1_k127_297988_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000004875 126.0
LYD1_k127_297988_4 Polysaccharide lyase - - - 0.0000000000000000009054 97.0
LYD1_k127_297988_5 - - - - 0.000000000000000001083 102.0
LYD1_k127_297988_6 - - - - 0.00000000266 66.0
LYD1_k127_297988_7 domain, Protein - - - 0.000000004239 68.0
LYD1_k127_300116_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 0.0 1061.0
LYD1_k127_300129_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000001395 247.0
LYD1_k127_300129_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000000000000000000000000005944 193.0
LYD1_k127_300129_2 Putative zinc-finger - - - 0.00000000000000000008491 103.0
LYD1_k127_300129_3 Response regulator receiver domain - - - 0.00000000000002559 86.0
LYD1_k127_3008208_0 aminotransferase K14260 - 2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 460.0
LYD1_k127_3008208_1 Periplasmic protein TonB links inner and outer membranes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 313.0
LYD1_k127_3008208_2 ABC-type multidrug transport system, ATPase and permease K06147 - - 0.0000000000000000000000000000000000000000000001888 179.0
LYD1_k127_3008208_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.0000000000000000108 95.0
LYD1_k127_301537_0 NAD(P)H dehydrogenase (quinone) K00355 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000128 285.0
LYD1_k127_301537_1 - - - - 0.00000000000000000000000000000000006515 143.0
LYD1_k127_301537_2 NAD(P)H dehydrogenase (quinone) K00355 - 1.6.5.2 0.000000000000000000000000000000001118 135.0
LYD1_k127_3030403_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000001094 273.0
LYD1_k127_3030403_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000001129 256.0
LYD1_k127_3030403_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000003496 170.0
LYD1_k127_3030403_3 COG1715 Restriction endonuclease K07448 - - 0.000001933 61.0
LYD1_k127_3073295_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 4.224e-218 679.0
LYD1_k127_3073295_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004726 443.0
LYD1_k127_3073295_2 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009006 295.0
LYD1_k127_3073295_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000000000000000009821 214.0
LYD1_k127_3082138_0 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541 334.0
LYD1_k127_3082138_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 323.0
LYD1_k127_3082138_2 DTW K05812 - - 0.0000000000000000000000000000000000000000000000000000000293 205.0
LYD1_k127_3082138_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.00000000000000000000000000000000000000001206 157.0
LYD1_k127_3082138_4 belongs to the CobB CobQ family K00625 - 2.3.1.8 0.000000000000000000000007436 101.0
LYD1_k127_3082138_5 - - - - 0.0002845 49.0
LYD1_k127_3086356_0 glycosyl transferase family K00697 - 2.4.1.15,2.4.1.347 1.088e-275 867.0
LYD1_k127_3086356_1 Belongs to the glycosyl hydrolase 31 family K07407 - 3.2.1.22 5.667e-243 766.0
LYD1_k127_3086356_2 A-macroglobulin complement component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004733 429.0
LYD1_k127_3086356_3 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.00000000000000000000000000000000000000000000000007669 203.0
LYD1_k127_3102192_0 Histidine kinase K03407,K13490 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 396.0
LYD1_k127_3102192_1 - - - - 0.000000000000000000000007733 106.0
LYD1_k127_3102192_2 protein heterodimerization activity - - - 0.00000000001584 69.0
LYD1_k127_3104260_0 Tetratricopeptide TPR_2 repeat protein - - - 0.00000001617 68.0
LYD1_k127_3104260_1 ABC transporter K15738 - - 0.00000008033 55.0
LYD1_k127_3104260_2 Nucleotidyltransferase - - - 0.00000008272 60.0
LYD1_k127_3122871_0 NADP Oxidoreductase K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 319.0
LYD1_k127_3122871_1 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002403 258.0
LYD1_k127_3122871_3 - - - - 0.000000000000000003478 86.0
LYD1_k127_314359_0 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003216 486.0
LYD1_k127_314359_1 Transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 308.0
LYD1_k127_314359_2 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001913 280.0
LYD1_k127_314359_3 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000000000000000000000000000006745 209.0
LYD1_k127_31549_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 9.746e-269 857.0
LYD1_k127_31549_1 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003548 321.0
LYD1_k127_31549_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000001334 132.0
LYD1_k127_31549_3 FecR protein - - - 0.000000000000000000000000000001181 137.0
LYD1_k127_31549_4 domain, Protein K00573,K02335 - 2.1.1.77,2.7.7.7 0.000718 48.0
LYD1_k127_316848_0 FAD binding domain of DNA photolyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006069 524.0
LYD1_k127_316848_1 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 353.0
LYD1_k127_316848_2 Flavin containing amine oxidoreductase K06955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007354 284.0
LYD1_k127_316848_3 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001898 254.0
LYD1_k127_316848_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000003227 248.0
LYD1_k127_316848_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000005061 228.0
LYD1_k127_3179113_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000907 565.0
LYD1_k127_3194911_0 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000003397 200.0
LYD1_k127_3194911_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000001547 162.0
LYD1_k127_3196250_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1415.0
LYD1_k127_3196250_1 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003668 289.0
LYD1_k127_3196250_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000001852 179.0
LYD1_k127_3196250_3 4Fe-4S dicluster domain K03390,K16887 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000009379 137.0
LYD1_k127_3206303_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 519.0
LYD1_k127_3206303_1 Histidine kinase K11383 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 509.0
LYD1_k127_3206303_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030955,GO:0031420,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132 3.6.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 414.0
LYD1_k127_3221498_0 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 348.0
LYD1_k127_3221498_1 MMPL family K07003 - - 0.000000000000000000000000000000000000000000000000000000000000004689 244.0
LYD1_k127_3221498_2 - - - - 0.0000000000000000000000000000000000001036 149.0
LYD1_k127_3221498_3 Tetratricopeptide repeat - - - 0.000000000001081 74.0
LYD1_k127_3224699_0 S-layer homology domain - - - 0.00000000000000000000000000008831 135.0
LYD1_k127_3224699_1 domain, Protein - - - 0.0000000000000000004729 103.0
LYD1_k127_3224699_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000009868 99.0
LYD1_k127_3236566_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002764 492.0
LYD1_k127_3236566_1 response regulator K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008322 387.0
LYD1_k127_3236566_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002809 249.0
LYD1_k127_3236566_3 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.0001137 51.0
LYD1_k127_323990_0 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005387 410.0
LYD1_k127_323990_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001112 267.0
LYD1_k127_323990_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001707 256.0
LYD1_k127_323990_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000009654 145.0
LYD1_k127_324153_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 368.0
LYD1_k127_324153_1 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
LYD1_k127_3267567_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 389.0
LYD1_k127_3267567_1 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005641 345.0
LYD1_k127_3267567_2 Belongs to the peptidase M10A family - - - 0.0000000007877 70.0
LYD1_k127_3267567_3 Cupin - - - 0.0003332 53.0
LYD1_k127_3283788_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002831 424.0
LYD1_k127_3283788_1 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 417.0
LYD1_k127_3283788_2 Domain of unknown function (DUF4350) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002668 257.0
LYD1_k127_3283788_3 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000003288 243.0
LYD1_k127_3283788_5 - - - - 0.0000000000000000000002229 112.0
LYD1_k127_3283788_6 Alpha-L-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Able to hydrolyze 1,5-, 1,3- and 1,2-alpha-linkages not only in L- arabinofuranosyl oligosaccharides, but also in polysaccharides containing terminal non-reducing L-arabinofuranoses in side chains, like L-arabinan, arabinogalactan and arabinoxylan K20844 - 3.2.1.55 0.000000000000000000001242 98.0
LYD1_k127_3283788_7 PD-(D/E)XK nuclease superfamily - - - 0.00001506 49.0
LYD1_k127_3283788_8 Tetratricopeptide repeat - - - 0.00002098 57.0
LYD1_k127_3287103_0 UDP binding domain K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 516.0
LYD1_k127_3287103_1 Belongs to the ompA family K03286,K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 293.0
LYD1_k127_3287103_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001403 248.0
LYD1_k127_3287103_3 - - - - 0.0000000000000000000000000000000000000000000000001921 187.0
LYD1_k127_3287900_0 Glycosyltransferase WbsX - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 471.0
LYD1_k127_3287900_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 350.0
LYD1_k127_3287900_10 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.000000000000000000003311 105.0
LYD1_k127_3287900_11 - - - - 0.0000000000000009486 87.0
LYD1_k127_3287900_12 PAS fold - - - 0.0003791 49.0
LYD1_k127_3287900_2 ATPases associated with a variety of cellular activities K01990,K09689,K09691 - 3.6.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006056 332.0
LYD1_k127_3287900_3 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 300.0
LYD1_k127_3287900_4 Transport permease protein K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000203 288.0
LYD1_k127_3287900_5 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001838 278.0
LYD1_k127_3287900_6 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009779 281.0
LYD1_k127_3287900_7 Glycosyltransferase WbsX - - - 0.0000000000000000000000000000000000000000000000000000000005087 225.0
LYD1_k127_3287900_8 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000008143 206.0
LYD1_k127_3287900_9 Glycosyl transferases group 1 - - - 0.0000000000000000000000000002277 128.0
LYD1_k127_3293522_0 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000003434 106.0
LYD1_k127_3293522_1 Belongs to the peptidase S1C family K04691,K04771,K04772 - 3.4.21.107 0.000000001203 71.0
LYD1_k127_3300625_0 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000001067 200.0
LYD1_k127_3300625_1 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00000000000006342 85.0
LYD1_k127_3300625_2 ABC-2 family transporter protein K01992 - - 0.0000004239 52.0
LYD1_k127_3316923_0 Metallo-beta-lactamase superfamily K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000524 312.0
LYD1_k127_3316923_1 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000002291 246.0
LYD1_k127_3316923_2 - - - - 0.0000000000000000000006507 98.0
LYD1_k127_3316923_4 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.0004605 44.0
LYD1_k127_3335107_0 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008506 589.0
LYD1_k127_3335107_1 Elongator protein 3, MiaB family, Radical SAM K22318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 354.0
LYD1_k127_3335107_2 alpha-L-arabinofuranosidase - - - 0.000000000000003054 91.0
LYD1_k127_3335107_3 TPR repeat - - - 0.00000000007166 74.0
LYD1_k127_3336521_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 462.0
LYD1_k127_3336521_1 Glycine cleavage system regulatory protein - - - 0.000000000000000000000000000000000000000000000161 175.0
LYD1_k127_3336521_3 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000381 76.0
LYD1_k127_3336521_4 Tetratricopeptide repeats - - - 0.0000000007755 71.0
LYD1_k127_3336521_5 PFAM PEGA domain - - - 0.0002764 54.0
LYD1_k127_3337186_1 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.00000000000000000005346 95.0
LYD1_k127_3337186_2 Universal bacterial protein YeaZ K14742 - - 0.000000000000000006231 90.0
LYD1_k127_3337186_3 - - - - 0.0000000000000000216 94.0
LYD1_k127_3337186_5 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000002236 75.0
LYD1_k127_3343566_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000002152 219.0
LYD1_k127_3354674_0 Belongs to the glycosyl hydrolase family 6 K01179,K01218,K19668 - 3.2.1.4,3.2.1.78,3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 393.0
LYD1_k127_3354674_1 IstB-like ATP binding protein - - - 0.000009178 50.0
LYD1_k127_3384015_0 PFAM HypF finger K04656 - - 1.975e-282 887.0
LYD1_k127_3384015_1 NADH-quinone oxidoreductase subunit F K18005 - 1.12.1.2 6.811e-199 638.0
LYD1_k127_3384015_2 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006218 559.0
LYD1_k127_3384015_3 Hydrogenase formation hypA family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008442 392.0
LYD1_k127_3384015_4 4Fe-4S single cluster domain K18006 - 1.12.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001853 281.0
LYD1_k127_3384015_5 Coenzyme F420-reducing hydrogenase, gamma subunit K18007 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000000000002046 226.0
LYD1_k127_3384015_6 Glycosyl hydrolase catalytic core - - - 0.0000000000000000000000000000000000000000000000000000000000003919 228.0
LYD1_k127_3384015_7 HupF/HypC family K04653 - - 0.000000000000000000000004702 106.0
LYD1_k127_3397127_0 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 509.0
LYD1_k127_3397127_1 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000124 104.0
LYD1_k127_340172_0 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 595.0
LYD1_k127_340172_1 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 541.0
LYD1_k127_340172_2 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000004234 267.0
LYD1_k127_340172_3 - - - - 0.00000698 50.0
LYD1_k127_340172_4 Resolvase - - - 0.00001017 47.0
LYD1_k127_3402877_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 1.276e-194 643.0
LYD1_k127_3402877_1 Glycosyl transferases group 1 K16703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 370.0
LYD1_k127_3402877_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.000000000000000000000000000000000000000000000000000000000000000004577 234.0
LYD1_k127_3402877_3 membrane - - - 0.0000000000000000000000000000000000000000000000001982 181.0
LYD1_k127_3404367_0 Belongs to the serpin family K13963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 352.0
LYD1_k127_3404367_1 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.000000000000000000000000000000000000007366 150.0
LYD1_k127_3404367_3 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000001641 101.0
LYD1_k127_3404367_4 Protein of unknown function (DUF2892) - - - 0.0000000002887 70.0
LYD1_k127_3404367_5 - - - - 0.00000003585 59.0
LYD1_k127_3405043_0 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 617.0
LYD1_k127_3405043_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000802 393.0
LYD1_k127_3405043_2 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000009216 214.0
LYD1_k127_3405960_0 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 361.0
LYD1_k127_3405960_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 306.0
LYD1_k127_3405960_2 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009724 271.0
LYD1_k127_3410542_0 Belongs to the glycosyl hydrolase family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004246 301.0
LYD1_k127_3410542_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000003098 169.0
LYD1_k127_3410542_2 negative regulation of transforming growth factor beta1 production K03068,K06261,K06593,K08867,K09187,K12488,K13738,K14972,K20050,K20371 GO:0000003,GO:0001654,GO:0001667,GO:0001745,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0017124,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030496,GO:0030707,GO:0030855,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032794,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0040011,GO:0043062,GO:0043063,GO:0044085,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0045171,GO:0045177,GO:0045179,GO:0045216,GO:0045807,GO:0048259,GO:0048260,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050839,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051302,GO:0051674,GO:0051704,GO:0051726,GO:0060429,GO:0060627,GO:0065007,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0090596,GO:0097435,GO:0098590,GO:0099568,GO:0099738 2.1.1.43,2.7.11.1 0.000000000000000000000000000000004842 149.0
LYD1_k127_3410542_3 Fibronectin type 3 domain - - - 0.00001365 59.0
LYD1_k127_3410542_4 Belongs to the glycosyl hydrolase 26 family K01218 - 3.2.1.78 0.0001237 56.0
LYD1_k127_3415396_0 Family membership K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000002032 256.0
LYD1_k127_3415396_1 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000001022 216.0
LYD1_k127_3415396_2 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000001665 199.0
LYD1_k127_3415396_3 pyridine nucleotide-disulfide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 0.0005102 43.0
LYD1_k127_3416411_0 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000003493 167.0
LYD1_k127_3418447_0 4Fe-4S dicluster domain - - - 9.346e-249 777.0
LYD1_k127_3418447_1 PFAM nitrite and sulphite reductase 4Fe-4S K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 519.0
LYD1_k127_3418447_10 - - - - 0.000000000000000826 90.0
LYD1_k127_3418447_2 TIGRFAM sulfite reductase, dissimilatory-type beta subunit K11181 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006431 500.0
LYD1_k127_3418447_3 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 421.0
LYD1_k127_3418447_4 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 348.0
LYD1_k127_3418447_5 PFAM Nitrate reductase gamma subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001131 255.0
LYD1_k127_3418447_6 TIGRFAM Tat (twin-arginine translocation) pathway signal sequence K00184 - - 0.0000000000000000000000000000000000000000000000000000007135 198.0
LYD1_k127_3418447_7 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000005631 196.0
LYD1_k127_3418447_8 sulfur relay protein, TusE DsrC DsvC family K11179 - - 0.000000000000000000000000000000000000001085 160.0
LYD1_k127_3418447_9 PFAM Nitrate reductase gamma subunit - - - 0.000000000000000004997 93.0
LYD1_k127_3426203_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 644.0
LYD1_k127_3426203_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008501 471.0
LYD1_k127_3426203_10 Psort location Cytoplasmic, score 8.96 K02078 - - 0.00000000005196 74.0
LYD1_k127_3426203_11 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity K02372 - 4.2.1.59 0.00000003489 64.0
LYD1_k127_3426203_12 Belongs to the beta-ketoacyl-ACP synthases family K05551,K09458 - 2.3.1.179,2.3.1.235,2.3.1.260 0.00000006474 66.0
LYD1_k127_3426203_13 PD-(D/E)XK nuclease superfamily - - - 0.000002366 53.0
LYD1_k127_3426203_14 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.000004586 58.0
LYD1_k127_3426203_2 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 432.0
LYD1_k127_3426203_3 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 357.0
LYD1_k127_3426203_4 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 291.0
LYD1_k127_3426203_5 Beta-ketoacyl synthase, C-terminal domain K09458,K21789 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000003629 269.0
LYD1_k127_3426203_6 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000000000000000000000000000000000006661 199.0
LYD1_k127_3426203_7 - - - - 0.0000000000000000000000001954 109.0
LYD1_k127_3426203_8 Belongs to the bacterial histone-like protein family K05788 - - 0.0000000000000000000000137 104.0
LYD1_k127_3426203_9 amp-dependent synthetase and ligase - - - 0.0000000000000000000001062 112.0
LYD1_k127_3426251_0 iron ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002421 279.0
LYD1_k127_3426251_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000001231 164.0
LYD1_k127_3426251_2 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000000003124 156.0
LYD1_k127_3426251_4 cellulose binding - - - 0.00000000001561 74.0
LYD1_k127_3432143_0 Pectate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000007713 231.0
LYD1_k127_3432143_1 cellulose-binding family ii - - - 0.00000000000000000000000000000000000000002547 174.0
LYD1_k127_3432143_2 - - - - 0.000000000000000000000000000000001997 143.0
LYD1_k127_3432143_3 FIST N domain - - - 0.000000000000007002 79.0
LYD1_k127_3437093_0 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000000000000000000000000000000006378 186.0
LYD1_k127_3437093_1 iron ion homeostasis - - - 0.000000000000000000000005645 106.0
LYD1_k127_3437093_2 PAS fold - - - 0.0000000000002633 70.0
LYD1_k127_3438123_0 TIGRFAM Hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.00000000000000000000000000000000000003734 153.0
LYD1_k127_3438123_1 Iron-storage protein K02217 - 1.16.3.2 0.0000000000000000000000000000001199 127.0
LYD1_k127_3438123_2 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000003187 104.0
LYD1_k127_3438123_3 Tetratricopeptide repeat - - - 0.00000000000000001213 95.0
LYD1_k127_3438123_4 ferric iron binding K02217,K02255 GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008199,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033554,GO:0042221,GO:0042592,GO:0042802,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0097577,GO:0098771 1.16.3.2 0.0000000003165 62.0
LYD1_k127_3438123_5 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18590 GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363 1.5.1.3 0.0001078 46.0
LYD1_k127_3438123_6 PD-(D/E)XK nuclease superfamily - - - 0.000786 45.0
LYD1_k127_3459981_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001055 263.0
LYD1_k127_3459981_1 PFAM amino acid permease-associated region K03294 - - 0.00000000000000000000000000000000000000000000000000000000000009716 230.0
LYD1_k127_3459981_2 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000001126 212.0
LYD1_k127_3473924_0 stress-induced mitochondrial fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842 314.0
LYD1_k127_3473924_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001387 274.0
LYD1_k127_3473924_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006402 258.0
LYD1_k127_3473924_3 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000007908 226.0
LYD1_k127_3473924_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000003483 124.0
LYD1_k127_3473924_5 Protein of unknown function (DUF2914) - - - 0.000000000003511 80.0
LYD1_k127_3476890_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000005127 213.0
LYD1_k127_3480824_0 Peptidoglycan-binding domain 1 protein K07260 - 3.4.17.14 0.000000000000945 70.0
LYD1_k127_3484085_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.0 1352.0
LYD1_k127_3484085_1 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009362 362.0
LYD1_k127_3484085_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009457 285.0
LYD1_k127_3484085_3 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000003924 218.0
LYD1_k127_3484085_4 Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair K03573 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.00000000000000000000000000000000000000002009 161.0
LYD1_k127_3484085_5 - - - - 0.000000000000000000000000000000000175 144.0
LYD1_k127_3491270_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 1.934e-259 810.0
LYD1_k127_3491270_1 Serine Threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 317.0
LYD1_k127_3491270_2 Serine threonine protein kinase - - - 0.0000000117 68.0
LYD1_k127_3504715_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007676 606.0
LYD1_k127_3504715_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 592.0
LYD1_k127_3504715_2 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000002368 216.0
LYD1_k127_3504715_3 MerR, DNA binding K19591 - - 0.000000000000000000000000000000000000004183 151.0
LYD1_k127_3504715_4 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000007755 132.0
LYD1_k127_3504715_5 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000003263 119.0
LYD1_k127_3522949_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 374.0
LYD1_k127_3522949_1 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 328.0
LYD1_k127_3522949_2 repeat protein - - - 0.000000000000000000000000000000000000000127 157.0
LYD1_k127_3524829_0 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 521.0
LYD1_k127_3524829_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01219 - 3.2.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 351.0
LYD1_k127_3524829_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 295.0
LYD1_k127_3524829_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0000004852 53.0
LYD1_k127_3526303_0 Tetratricopeptide repeat - - - 0.0 1280.0
LYD1_k127_3526588_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 1.235e-239 753.0
LYD1_k127_3526588_1 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 573.0
LYD1_k127_3526588_2 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004722 447.0
LYD1_k127_3526588_3 Histidine kinase K02668,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 353.0
LYD1_k127_3533030_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 1.948e-244 764.0
LYD1_k127_3533030_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 2.731e-210 668.0
LYD1_k127_3533030_10 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000009969 71.0
LYD1_k127_3533030_11 - - - - 0.000000005398 60.0
LYD1_k127_3533030_13 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.0000000324 57.0
LYD1_k127_3533030_2 Aminotransferase K11358 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 441.0
LYD1_k127_3533030_3 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000007285 211.0
LYD1_k127_3533030_4 PIN domain - - - 0.0000000000000000000000000000000000000000000007703 174.0
LYD1_k127_3533030_5 ACT domain - - - 0.0000000000000000000000000000000000004936 153.0
LYD1_k127_3533030_6 - - - - 0.000000000000000000000000000004183 124.0
LYD1_k127_3533030_7 positive regulation of growth K01081 - 3.1.3.5 0.000000000000000000148 91.0
LYD1_k127_3533030_8 Toxin-antitoxin system, toxin component, PIN family - - - 0.000000000000000001199 93.0
LYD1_k127_3533030_9 PFAM DNA polymerase beta domain protein region - - - 0.000000000000005234 81.0
LYD1_k127_3533549_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 610.0
LYD1_k127_3533549_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 413.0
LYD1_k127_3533549_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 346.0
LYD1_k127_3533549_3 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000003328 242.0
LYD1_k127_3533549_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.00000000005293 64.0
LYD1_k127_3544228_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 443.0
LYD1_k127_3544228_1 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 343.0
LYD1_k127_3544228_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000001638 250.0
LYD1_k127_3544228_3 Roadblock/LC7 domain - - - 0.0000000000000000000000000000000000000000000000000000004288 198.0
LYD1_k127_3554805_0 Membrane - - - 0.000000000000000000000000000000000000000000000000000004722 205.0
LYD1_k127_3554805_1 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000005733 184.0
LYD1_k127_3554805_2 - - - - 0.0000000000000000000000005329 121.0
LYD1_k127_3554805_3 Alpha galactosidase A K07407 - 3.2.1.22 0.000000000000000004103 98.0
LYD1_k127_3581202_0 PFAM Acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 474.0
LYD1_k127_3581202_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 360.0
LYD1_k127_3581202_2 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007565 353.0
LYD1_k127_3581202_3 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 348.0
LYD1_k127_3581202_4 serine threonine protein kinase K08282,K08884,K11916,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000005691 219.0
LYD1_k127_3581202_5 OmpA family - - - 0.0000000000000000000000000000000000000000000005699 178.0
LYD1_k127_3581202_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000001781 158.0
LYD1_k127_3581202_7 PLD-like domain - - - 0.0000000000000000001902 103.0
LYD1_k127_358133_0 aspartate kinase activity K00651,K00928 - 2.3.1.46,2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 426.0
LYD1_k127_358133_1 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001501 273.0
LYD1_k127_358133_10 Rieske-like [2Fe-2S] domain - - - 0.000307 45.0
LYD1_k127_358133_2 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004283 232.0
LYD1_k127_358133_3 - - - - 0.0000000000000000000000000000000000000000000001608 183.0
LYD1_k127_358133_4 hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000167 165.0
LYD1_k127_358133_5 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000005059 161.0
LYD1_k127_358133_6 - - - - 0.00000000000000000000000000000000000002416 153.0
LYD1_k127_358133_7 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000009135 143.0
LYD1_k127_358133_8 Secreted repeat of unknown function - - - 0.000000000000000000000003506 115.0
LYD1_k127_3593599_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001966 273.0
LYD1_k127_3593599_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000001277 97.0
LYD1_k127_3593599_2 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000001194 75.0
LYD1_k127_3593599_3 Ribosomal protein L34 K02914 - - 0.00000000005891 63.0
LYD1_k127_3605913_0 cellulase activity - - - 0.000001098 57.0
LYD1_k127_3607410_0 membrane protein (DUF2231) - - - 0.000000000000000003197 93.0
LYD1_k127_3607410_1 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000001729 66.0
LYD1_k127_3607410_2 - - - - 0.000000006102 62.0
LYD1_k127_3607410_3 SMART Elongator protein 3 MiaB NifB - - - 0.000000733 63.0
LYD1_k127_361937_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 5.539e-290 914.0
LYD1_k127_3623919_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008452 411.0
LYD1_k127_3623919_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 413.0
LYD1_k127_3623919_2 Protein of unknown function (DUF2845) - - - 0.000002366 53.0
LYD1_k127_3624835_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 381.0
LYD1_k127_3624835_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000006476 192.0
LYD1_k127_3624835_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000007472 192.0
LYD1_k127_3624835_3 polysaccharide deacetylase - - - 0.0004873 46.0
LYD1_k127_3625231_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 411.0
LYD1_k127_3625231_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 379.0
LYD1_k127_3625231_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004943 346.0
LYD1_k127_3625231_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003489 325.0
LYD1_k127_3625231_4 - - - - 0.000000000000000000000000000000000003312 147.0
LYD1_k127_3625231_5 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000006484 107.0
LYD1_k127_3629236_0 COGs COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 286.0
LYD1_k127_3639512_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008462 554.0
LYD1_k127_3639512_1 von Willebrand factor (vWF) type A domain - - - 0.0000006108 60.0
LYD1_k127_3639512_2 Tetratricopeptide repeat - - - 0.000003179 53.0
LYD1_k127_3643613_0 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 589.0
LYD1_k127_3643613_1 Integrin alpha (beta-propellor repeats). - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 411.0
LYD1_k127_3643613_2 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 303.0
LYD1_k127_3643613_3 Protein containing a von Willebrand factor type A domain - - - 0.0000000000000000000000000003161 120.0
LYD1_k127_3643613_4 B12 binding domain - - - 0.000000000000001196 92.0
LYD1_k127_3644352_0 Rhs Element Vgr Protein K11904 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005528 451.0
LYD1_k127_3644352_1 Transporter associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 371.0
LYD1_k127_3644352_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000005057 76.0
LYD1_k127_3649601_0 transcriptional regulator K12266 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 482.0
LYD1_k127_3649601_1 PAS domain K09155 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 350.0
LYD1_k127_3649601_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000000000000000000000000000000008798 151.0
LYD1_k127_3649601_3 PFAM thioesterase superfamily - - - 0.00000000000002526 75.0
LYD1_k127_3654677_0 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 539.0
LYD1_k127_3654677_1 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005543 457.0
LYD1_k127_3654677_2 NAD(P)H-binding K01784,K12448 - 5.1.3.2,5.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 439.0
LYD1_k127_3666216_0 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 304.0
LYD1_k127_3666216_1 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 0.000000000000000000000000004199 123.0
LYD1_k127_3675289_0 Putative glutamine amidotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006508 510.0
LYD1_k127_3675289_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00004897 55.0
LYD1_k127_3679145_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 6.066e-272 863.0
LYD1_k127_3679145_2 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000005354 229.0
LYD1_k127_368403_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002271 248.0
LYD1_k127_368403_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000007709 136.0
LYD1_k127_368403_2 peptidyl-tyrosine sulfation - - - 0.0007598 50.0
LYD1_k127_371312_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008641 554.0
LYD1_k127_371312_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000724 539.0
LYD1_k127_371312_10 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000001985 214.0
LYD1_k127_371312_11 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000003261 203.0
LYD1_k127_371312_12 Dockerin type I repeat - - - 0.000000000000000000000000000000000000000000000000001678 196.0
LYD1_k127_371312_13 PA14 domain - - - 0.0000000000000000000000000000000000000000000000001402 199.0
LYD1_k127_371312_14 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000001402 151.0
LYD1_k127_371312_15 cephalosporin hydroxylase - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0016999,GO:0017000,GO:0017144,GO:0030770,GO:0032259,GO:0044237,GO:0044249 - 0.0000000000000000000000000006179 125.0
LYD1_k127_371312_16 - - - - 0.0000008032 55.0
LYD1_k127_371312_2 Ammonium Transporter Family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 467.0
LYD1_k127_371312_3 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 421.0
LYD1_k127_371312_4 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 396.0
LYD1_k127_371312_5 Methyltransferase small domain K15460 - 2.1.1.223 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 331.0
LYD1_k127_371312_6 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000005705 258.0
LYD1_k127_371312_7 short chain amide porin - - - 0.000000000000000000000000000000000000000000000000000000000000000000004072 250.0
LYD1_k127_371312_8 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000001983 230.0
LYD1_k127_3716676_0 topoisomerase K02469 - 5.99.1.3 2.488e-302 947.0
LYD1_k127_3716676_1 COG0187 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02470,K02622 - 5.99.1.3 2.544e-237 749.0
LYD1_k127_3716676_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 369.0
LYD1_k127_3716676_3 deaminase K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000419 244.0
LYD1_k127_3716676_4 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000001747 185.0
LYD1_k127_3716676_5 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000001257 163.0
LYD1_k127_3716676_6 - - - - 0.0000004185 62.0
LYD1_k127_3721728_0 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007877 351.0
LYD1_k127_3721728_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 355.0
LYD1_k127_3721728_2 MacB-like periplasmic core domain K02004 - - 0.0000001519 55.0
LYD1_k127_3721728_3 - - - - 0.0000002499 53.0
LYD1_k127_3722215_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 585.0
LYD1_k127_3722215_1 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.000000000000000000000000000000000000000000000000000002725 192.0
LYD1_k127_3722215_2 FecR protein - - - 0.000000000000000000000000000000905 128.0
LYD1_k127_3722215_4 Tetratricopeptide repeat - - - 0.0000000002854 70.0
LYD1_k127_372810_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 312.0
LYD1_k127_372810_1 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000472 289.0
LYD1_k127_372810_2 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000005341 225.0
LYD1_k127_372810_3 ZIP Zinc transporter K07238 GO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006826,GO:0006828,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015086,GO:0015087,GO:0015093,GO:0015318,GO:0015684,GO:0015691,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0034755,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070574,GO:0070838,GO:0071421,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903874 - 0.0000000000000000000000000000000000000004832 153.0
LYD1_k127_372810_4 - - - - 0.000000000001197 74.0
LYD1_k127_3733383_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1142.0
LYD1_k127_3733383_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 470.0
LYD1_k127_3733383_10 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000004092 95.0
LYD1_k127_3733383_11 Belongs to the ompA family K03286 - - 0.0000000003189 73.0
LYD1_k127_3733383_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009057 334.0
LYD1_k127_3733383_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001131 274.0
LYD1_k127_3733383_4 MotA/TolQ/ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000006682 212.0
LYD1_k127_3733383_5 TonB C terminal K03832 - - 0.0000000000000000000000000000000000000000000000146 186.0
LYD1_k127_3733383_6 Response regulator, receiver K02657,K20972 - - 0.000000000000000000000000000000000000000000000786 179.0
LYD1_k127_3733383_7 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000009858 116.0
LYD1_k127_3733383_8 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000004821 117.0
LYD1_k127_3733383_9 Putative transposase of IS4/5 family (DUF4096) - - - 0.000000000000000000000007341 103.0
LYD1_k127_3740072_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 613.0
LYD1_k127_3745036_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016874,GO:0016886,GO:0030312,GO:0033554,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 3.449e-199 643.0
LYD1_k127_3745036_1 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 484.0
LYD1_k127_3745036_10 SMART Tetratricopeptide - - - 0.000000000008689 78.0
LYD1_k127_3745036_11 Periplasmic binding protein domain K10439 - - 0.000000009418 68.0
LYD1_k127_3745036_2 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 421.0
LYD1_k127_3745036_3 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009161 304.0
LYD1_k127_3745036_4 epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000008401 262.0
LYD1_k127_3745036_5 Transcriptional regulator, CarD family K07736 - - 0.00000000000000000000000000000000000000000000000000003427 192.0
LYD1_k127_3745036_6 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K11954 - - 0.0000000000000000000000000000000000000000000000000001048 203.0
LYD1_k127_3745036_7 Male sterility protein K01897 - 6.2.1.3 0.0000000000000000000000000000000000000002755 155.0
LYD1_k127_3745036_8 Prokaryotic N-terminal methylation motif K02650 - - 0.0000000000000000000002951 104.0
LYD1_k127_3745036_9 Prokaryotic N-terminal methylation motif K02650,K02655 - - 0.00000000000001477 81.0
LYD1_k127_3750257_0 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 395.0
LYD1_k127_3750257_1 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003575 271.0
LYD1_k127_3750257_2 peptidase - - - 0.000000000000000000000000000000000000000000000000000000007373 213.0
LYD1_k127_3750257_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000006837 147.0
LYD1_k127_3750257_5 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00002013 57.0
LYD1_k127_3752023_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007494 432.0
LYD1_k127_3752023_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004404 280.0
LYD1_k127_3752023_2 Belongs to the Dps family K04047 - - 0.00000000000000000000000003108 119.0
LYD1_k127_3752023_3 SpoIVB peptidase S55 - - - 0.000146 48.0
LYD1_k127_3753706_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 370.0
LYD1_k127_3753706_1 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000008577 149.0
LYD1_k127_3753706_2 PilZ domain - - - 0.0000000000000000000000000002546 127.0
LYD1_k127_3753706_3 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000001034 60.0
LYD1_k127_3761709_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005284 445.0
LYD1_k127_3761709_1 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 421.0
LYD1_k127_3761709_2 Glycosyl hydrolases family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001134 258.0
LYD1_k127_3761709_3 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000009735 214.0
LYD1_k127_3761709_4 - - - - 0.000000000000000000000000000000000000000001843 161.0
LYD1_k127_3761709_5 Glycosyl hydrolases family 2, sugar binding domain - - - 0.000000000000000000000000000000000000005008 150.0
LYD1_k127_3761709_6 - - - - 0.000000000000000000000000000009416 137.0
LYD1_k127_3761709_7 pilus organization K07346 - - 0.000000000000328 83.0
LYD1_k127_3761709_8 Helix-turn-helix domain - - - 0.0007487 45.0
LYD1_k127_3772503_0 Non-ribosomal peptide synthetase modules and related proteins - - - 0.0 1329.0
LYD1_k127_3772503_1 Glycosyltransferase like family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 308.0
LYD1_k127_3772503_2 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000000000000000000000000000000000002418 226.0
LYD1_k127_3772503_3 Integrase core domain K07497 - - 0.0000000000000000000000000000000000000000000000008416 182.0
LYD1_k127_3772503_4 PFAM Nitroreductase - - - 0.0000000000000000000000000000000000000000001461 172.0
LYD1_k127_3772503_5 Putative transposase - - - 0.0000002897 61.0
LYD1_k127_3772503_6 AMP-binding enzyme C-terminal domain - - - 0.000002395 57.0
LYD1_k127_377640_0 polysaccharide biosynthetic process K06409 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001017 277.0
LYD1_k127_377640_1 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000001132 243.0
LYD1_k127_377640_2 PilZ domain K02676 - - 0.0000000000000000000000000000000000003153 145.0
LYD1_k127_3776403_0 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001874 254.0
LYD1_k127_3776403_1 THUMP domain K07444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005192 253.0
LYD1_k127_3776403_2 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000005825 190.0
LYD1_k127_3776403_3 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000003613 142.0
LYD1_k127_3780031_0 Belongs to the glycosyl hydrolase 11 (cellulase G) family K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000005621 271.0
LYD1_k127_3780031_1 Alpha/beta hydrolase family K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000007781 244.0
LYD1_k127_3780031_2 family 8 K15531 - 3.2.1.156 0.00000000001826 65.0
LYD1_k127_379684_0 beta-lactamase - - - 1.464e-209 676.0
LYD1_k127_379684_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 593.0
LYD1_k127_379684_2 4fe-4S ferredoxin, iron-sulfur binding domain protein K02572 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0044424,GO:0044464,GO:0050896 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 416.0
LYD1_k127_379684_3 virion core protein (lumpy skin disease virus) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009015 382.0
LYD1_k127_379684_4 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000005314 194.0
LYD1_k127_379684_5 - K07283 - - 0.0000000000000000000000000000000000000000000006157 181.0
LYD1_k127_3804542_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002446 273.0
LYD1_k127_3804542_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000000000000000009651 202.0
LYD1_k127_3804542_2 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000005722 190.0
LYD1_k127_3804542_3 DNA mismatch repair protein MutT K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000001077 168.0
LYD1_k127_3804542_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000002279 113.0
LYD1_k127_3804542_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0003037 48.0
LYD1_k127_3811840_0 phosphoenolpyruvate carboxylase activity K01595 - 4.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 340.0
LYD1_k127_3811840_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000001954 114.0
LYD1_k127_3811840_2 Mycolic acid cyclopropane synthetase K15467 - 2.1.1.315 0.00000000000000000323 94.0
LYD1_k127_3811840_3 - - - - 0.00000005334 55.0
LYD1_k127_3812946_0 - - - - 0.0000000000000000000000001194 124.0
LYD1_k127_3812946_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000002572 100.0
LYD1_k127_3812946_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000002433 77.0
LYD1_k127_3819375_0 Glyco_18 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 338.0
LYD1_k127_3819375_1 metallopeptidase activity K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000008935 257.0
LYD1_k127_3837741_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 6.28e-254 802.0
LYD1_k127_3837741_1 protein kinase activity - - - 0.00000000000000000000000000000000000002581 165.0
LYD1_k127_3837741_2 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000009743 61.0
LYD1_k127_3841110_0 Belongs to the glycosyl hydrolase 67 family K01235 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0010413,GO:0016052,GO:0016787,GO:0016798,GO:0033939,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0045491,GO:0045493,GO:0071554,GO:0071704,GO:1901575,GO:2000886 3.2.1.139 2.941e-204 640.0
LYD1_k127_3841986_0 TIGRFAM tungstate ABC transporter binding protein WtpA K15495 - - 0.0000000000000000000000000000000000000000000000000000866 199.0
LYD1_k127_3841986_1 PFAM binding-protein-dependent transport systems inner membrane component K02018,K02046,K15496 - - 0.00000000000000000000000000000000000000001556 174.0
LYD1_k127_3841986_2 Psort location CytoplasmicMembrane, score - - - 0.000000001264 73.0
LYD1_k127_3841986_3 Protein conserved in bacteria - - - 0.00000367 61.0
LYD1_k127_3860727_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 337.0
LYD1_k127_3860727_1 Sigma-70, region 4 - - - 0.00001476 52.0
LYD1_k127_3863778_0 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 460.0
LYD1_k127_3863778_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004878 254.0
LYD1_k127_3863778_2 NADP Oxidoreductase K06988 - 1.5.1.40 0.000000000000000000000000000000002619 130.0
LYD1_k127_3863778_3 ORF6N domain - - - 0.00000000000000004671 82.0
LYD1_k127_3863778_4 MEDS: MEthanogen/methylotroph, DcmR Sensory domain - - - 0.000000000000001391 81.0
LYD1_k127_3863778_5 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.000000291 52.0
LYD1_k127_3863778_6 TPR repeat - - - 0.000008529 59.0
LYD1_k127_3863778_7 Histidine kinase - - - 0.0002171 48.0
LYD1_k127_3879828_0 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001316 262.0
LYD1_k127_3879828_2 Esterase PHB depolymerase K03932 - - 0.00001039 59.0
LYD1_k127_3890687_0 endonuclease activity - - - 0.0000000000000000000000000000000000000000001076 173.0
LYD1_k127_3890687_1 DinB family - - - 0.00000000000000000000000000000000000000005488 157.0
LYD1_k127_3890687_2 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000005077 110.0
LYD1_k127_3890687_3 - - - - 0.0000000000000000001163 94.0
LYD1_k127_3890687_4 integral membrane protein - - - 0.0000000001254 70.0
LYD1_k127_3890687_5 Putative prokaryotic signal transducing protein - - - 0.000004961 57.0
LYD1_k127_3902128_0 Putative metal-binding motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000007722 256.0
LYD1_k127_3902128_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000301 247.0
LYD1_k127_3902128_2 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000004116 175.0
LYD1_k127_3902128_3 diguanylate cyclase - - - 0.00000000000000000007417 104.0
LYD1_k127_3904266_0 Beta propeller domain - - - 0.0000000000000007424 93.0
LYD1_k127_3908324_0 repeat protein - - - 7.764e-295 987.0
LYD1_k127_3908324_1 Biotin carboxylase K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 538.0
LYD1_k127_3908324_2 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 332.0
LYD1_k127_3926284_0 AcrB/AcrD/AcrF family K15726 - - 8.008e-197 638.0
LYD1_k127_3926284_1 PFAM GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000004955 211.0
LYD1_k127_3926284_2 Histidine kinase K13587 - 2.7.13.3 0.000000001134 70.0
LYD1_k127_3930252_0 hydrolase, family 3 K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006418 618.0
LYD1_k127_3930252_1 ABC transporter substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 421.0
LYD1_k127_3930252_2 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 409.0
LYD1_k127_3930252_3 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 357.0
LYD1_k127_3930252_4 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000001736 162.0
LYD1_k127_3930963_0 glycosyl transferase, family 39 K00728 - 2.4.1.109 0.000000000000000000003247 109.0
LYD1_k127_3930963_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000004359 64.0
LYD1_k127_3930963_3 GTPase inhibitor activity K13758 GO:0001750,GO:0003008,GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004857,GO:0005095,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005929,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007601,GO:0007602,GO:0008081,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009987,GO:0016020,GO:0016319,GO:0016787,GO:0016788,GO:0017016,GO:0017137,GO:0019899,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031253,GO:0031267,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0034260,GO:0042578,GO:0042622,GO:0042995,GO:0043005,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044441,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0047555,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051336,GO:0051346,GO:0051606,GO:0051716,GO:0060170,GO:0060322,GO:0060589,GO:0065007,GO:0065009,GO:0071944,GO:0097458,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0098772,GO:0120025,GO:0120038 - 0.0000991 54.0
LYD1_k127_3932595_0 Helix-hairpin-helix motif K02237 - - 0.00000000000386 74.0
LYD1_k127_3932595_1 - - - - 0.0001893 54.0
LYD1_k127_3938694_0 ABC transporter K15738 - - 0.00000008033 55.0
LYD1_k127_3938694_1 domain, Protein - - - 0.0000001922 63.0
LYD1_k127_3938694_2 Transposase - - - 0.000001693 57.0
LYD1_k127_3938694_3 Belongs to the peptidase S8 family K14645 - - 0.0005763 52.0
LYD1_k127_3941083_0 Endoglucanase K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 342.0
LYD1_k127_3941083_1 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000001051 239.0
LYD1_k127_3941083_2 Glycoside hydrolase family - - - 0.00004459 55.0
LYD1_k127_3956780_0 Belongs to the pseudouridine synthase RluA family K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 312.0
LYD1_k127_3956780_1 PFAM HhH-GPD superfamily base excision DNA repair protein K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000009769 247.0
LYD1_k127_3956780_2 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.00000000000000000000000000000000000000000000000004777 199.0
LYD1_k127_3956780_3 MazG-like family - - - 0.0000000000000006124 79.0
LYD1_k127_3967115_0 COG0618 Exopolyphosphatase-related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 336.0
LYD1_k127_3967115_1 PFAM Glycosyl transferase family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 328.0
LYD1_k127_3967115_2 Predicted membrane protein (DUF2079) K07778 - 2.7.13.3 0.0000000000000000000000000000000000000000001265 181.0
LYD1_k127_3967115_3 Predicted membrane protein (DUF2079) - - - 0.000000000000000000000006012 119.0
LYD1_k127_3967115_4 F5/8 type C domain - - - 0.0002408 52.0
LYD1_k127_396745_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 1.798e-198 643.0
LYD1_k127_396745_1 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009594 558.0
LYD1_k127_396745_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000001261 260.0
LYD1_k127_396745_3 Two component regulator propeller - - - 0.000000000000000000000000000003198 134.0
LYD1_k127_3974713_0 beta-galactosidase activity K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932 337.0
LYD1_k127_3974713_1 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 294.0
LYD1_k127_3976451_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 598.0
LYD1_k127_3976451_1 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000002139 86.0
LYD1_k127_3977625_0 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000002935 145.0
LYD1_k127_3982931_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000008791 228.0
LYD1_k127_3982931_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000005114 157.0
LYD1_k127_3982931_2 Belongs to the bacterial histone-like protein family K05788 - - 0.00000000000000000000000000001478 135.0
LYD1_k127_3983919_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 2.958e-216 706.0
LYD1_k127_3983919_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 595.0
LYD1_k127_3983919_10 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000000000004403 158.0
LYD1_k127_3983919_11 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000001016 146.0
LYD1_k127_3983919_12 Tetratricopeptide repeat - - - 0.00000000000000000000000000000005784 140.0
LYD1_k127_3983919_13 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000001563 89.0
LYD1_k127_3983919_14 PTS HPr component phosphorylation site K11189 - - 0.000000000000000003782 87.0
LYD1_k127_3983919_15 PTS system fructose IIA component K02793 - 2.7.1.191 0.00000000000000001923 90.0
LYD1_k127_3983919_2 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 486.0
LYD1_k127_3983919_3 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007459 425.0
LYD1_k127_3983919_4 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 383.0
LYD1_k127_3983919_5 Domain of unknown function DUF11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 405.0
LYD1_k127_3983919_6 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009592 375.0
LYD1_k127_3983919_7 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007855 357.0
LYD1_k127_3983919_8 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002181 282.0
LYD1_k127_3983919_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000107 251.0
LYD1_k127_4013063_0 Sigma-54 interaction domain - - - 7.893e-196 624.0
LYD1_k127_4013063_1 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004284 611.0
LYD1_k127_4013174_0 Belongs to the glycosyl hydrolase 43 family K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008552 561.0
LYD1_k127_4013174_1 Belongs to the glycosyl hydrolase 43 family K01181,K09955 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 544.0
LYD1_k127_4013174_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 424.0
LYD1_k127_4013174_3 iron ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001032 286.0
LYD1_k127_4013174_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000001914 154.0
LYD1_k127_4013174_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000005881 138.0
LYD1_k127_402664_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 347.0
LYD1_k127_402664_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007452 299.0
LYD1_k127_402664_2 PFAM peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000000002101 231.0
LYD1_k127_402664_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000001292 143.0
LYD1_k127_402664_4 Protein of unknown function (DUF3467) - - - 0.000000000000000000001005 110.0
LYD1_k127_4033815_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 320.0
LYD1_k127_4033815_1 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000704 192.0
LYD1_k127_4033815_2 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000000007734 78.0
LYD1_k127_4034315_0 - - - - 0.00000000000000000000000000000000000000000000000004603 192.0
LYD1_k127_4034315_2 - - - - 0.0001254 50.0
LYD1_k127_4034686_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008104 501.0
LYD1_k127_4034686_1 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000000000000000000000002884 199.0
LYD1_k127_4034686_3 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.00000000000000000000002067 110.0
LYD1_k127_4034686_4 - - - - 0.0000000000000000000265 95.0
LYD1_k127_4034686_5 PEGA domain - - - 0.0000000001926 69.0
LYD1_k127_4036674_0 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006545 302.0
LYD1_k127_4043376_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 630.0
LYD1_k127_4043376_1 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000007624 158.0
LYD1_k127_4043523_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000009192 273.0
LYD1_k127_4043523_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000002948 157.0
LYD1_k127_4043523_2 - - - - 0.0000000000000000000000000000000003526 136.0
LYD1_k127_4043523_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000001348 87.0
LYD1_k127_4043523_5 Furin-like repeats - - - 0.0000004221 63.0
LYD1_k127_4045679_1 - - - - 0.0000000000000000000000000000000000000000000008366 185.0
LYD1_k127_4045679_2 Type II IV secretion system protein K02283,K03609 - - 0.000000000000000000000000000000000000000165 170.0
LYD1_k127_4051745_0 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000000001644 125.0
LYD1_k127_4051745_1 PilZ domain - - - 0.00000001815 66.0
LYD1_k127_4051745_2 SEC-C Motif Domain Protein - - - 0.0000004718 61.0
LYD1_k127_4053468_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 318.0
LYD1_k127_4053468_2 PFAM ATP-binding region, ATPase domain protein K10125 - 2.7.13.3 0.0000115 57.0
LYD1_k127_405408_0 (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family) - - - 0.00000000000000000000000000000000000000000000000000000000000000001632 252.0
LYD1_k127_405408_1 Fibronectin type III - - - 0.00000000000000000000000000000000000000000000000002419 204.0
LYD1_k127_405408_2 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000003218 199.0
LYD1_k127_405408_3 Cupin domain - - - 0.000000000000000000000000000000000000007366 150.0
LYD1_k127_4056295_0 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000005473 217.0
LYD1_k127_4056295_1 membrane - - - 0.00000000000000000000007619 114.0
LYD1_k127_4058811_0 Required for chromosome condensation and partitioning K03529 - - 8.831e-232 762.0
LYD1_k127_4058811_1 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000206 216.0
LYD1_k127_4058811_2 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000001042 153.0
LYD1_k127_4058811_3 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.000000009308 67.0
LYD1_k127_4063812_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008966 254.0
LYD1_k127_4063812_1 polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000000000000009268 157.0
LYD1_k127_4063812_2 CHAP domain - - - 0.000000000000005295 81.0
LYD1_k127_4063812_3 DNA polymerase beta domain protein region K07075 - - 0.00000000006987 71.0
LYD1_k127_4066498_0 PFAM Carbamoyltransferase K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 450.0
LYD1_k127_4066498_1 Belongs to the glycosyl hydrolase family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000004541 274.0
LYD1_k127_4066498_2 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000000000000000000000001614 155.0
LYD1_k127_4066498_3 negative regulation of transforming growth factor beta1 production K03068,K06261,K06593,K08867,K09187,K12488,K13738,K14972,K20050,K20371 GO:0000003,GO:0001654,GO:0001667,GO:0001745,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0017124,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030496,GO:0030707,GO:0030855,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032794,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0040011,GO:0043062,GO:0043063,GO:0044085,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0045171,GO:0045177,GO:0045179,GO:0045216,GO:0045807,GO:0048259,GO:0048260,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050839,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051302,GO:0051674,GO:0051704,GO:0051726,GO:0060429,GO:0060627,GO:0065007,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0090596,GO:0097435,GO:0098590,GO:0099568,GO:0099738 2.1.1.43,2.7.11.1 0.0000000000000000000000000000001636 145.0
LYD1_k127_4066498_4 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000001409 124.0
LYD1_k127_4066498_5 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000008536 115.0
LYD1_k127_4076704_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 485.0
LYD1_k127_4076704_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 319.0
LYD1_k127_4076704_3 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000001539 78.0
LYD1_k127_4076704_4 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.0000000006086 64.0
LYD1_k127_4076850_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 430.0
LYD1_k127_4076850_1 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 406.0
LYD1_k127_4076850_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000002727 229.0
LYD1_k127_4079439_0 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003265 260.0
LYD1_k127_4079439_1 O-methyltransferase K00588 - 2.1.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000004177 249.0
LYD1_k127_4079439_2 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0000000000000000000000000000000000000000000000000000000000000000001586 237.0
LYD1_k127_4079439_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000006922 65.0
LYD1_k127_4083929_0 Putative transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006429 317.0
LYD1_k127_4083929_1 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000142 223.0
LYD1_k127_4094848_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 357.0
LYD1_k127_4094848_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000006294 171.0
LYD1_k127_4094848_2 gag-polyprotein putative aspartyl protease - - - 0.0000005462 63.0
LYD1_k127_4100985_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000766 263.0
LYD1_k127_4100985_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000003265 219.0
LYD1_k127_4112693_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 4.367e-276 889.0
LYD1_k127_4112693_1 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 544.0
LYD1_k127_4112693_10 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000001541 149.0
LYD1_k127_4112693_12 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000000003429 92.0
LYD1_k127_4112693_13 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000009889 90.0
LYD1_k127_4112693_14 Putative zinc-finger - - - 0.0000001694 56.0
LYD1_k127_4112693_15 IPT/TIG domain - - - 0.000002364 59.0
LYD1_k127_4112693_2 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 520.0
LYD1_k127_4112693_3 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 298.0
LYD1_k127_4112693_4 FHA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006055 259.0
LYD1_k127_4112693_5 Penicillin-insensitive murein endopeptidase K07261 - - 0.00000000000000000000000000000000000000000000000004072 192.0
LYD1_k127_4112693_6 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000001428 173.0
LYD1_k127_4112693_7 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000001586 172.0
LYD1_k127_4112693_8 SurA N-terminal domain K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000002282 176.0
LYD1_k127_4112693_9 MerR HTH family regulatory protein - - - 0.0000000000000000000000000000000000008204 147.0
LYD1_k127_4116424_0 S-layer homology domain - - - 0.0004414 53.0
LYD1_k127_4121927_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004269 464.0
LYD1_k127_4121927_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000007567 162.0
LYD1_k127_4121927_2 Periplasmic protein TonB links inner and outer membranes - - - 0.0000000000000000000000000000000006979 133.0
LYD1_k127_4121927_3 transferase activity, transferring glycosyl groups K08256 - 2.4.1.345 0.0000000000000000000000002092 115.0
LYD1_k127_4121927_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000004173 65.0
LYD1_k127_4125733_0 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 349.0
LYD1_k127_4137212_0 TNFR/NGFR cysteine-rich region K14965 - - 0.0000000000000000000000000000000000000000143 175.0
LYD1_k127_4137212_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000001824 155.0
LYD1_k127_4137212_2 Protein of unknown function (DUF790) K09744 - - 0.000000000000000000000000000000003929 142.0
LYD1_k127_4137212_3 Kazal type serine protease inhibitors - - - 0.000000000000000000001241 109.0
LYD1_k127_4137212_4 - - - - 0.000001879 56.0
LYD1_k127_4142382_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 8.161e-283 880.0
LYD1_k127_4142382_1 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006226 617.0
LYD1_k127_4142382_2 pyruvate phosphate dikinase K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002781 282.0
LYD1_k127_4142382_3 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000161 235.0
LYD1_k127_4142382_4 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000474 154.0
LYD1_k127_4142382_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000001047 149.0
LYD1_k127_4142382_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000009449 130.0
LYD1_k127_4142382_7 Helix-turn-helix domain - - - 0.00000000001167 72.0
LYD1_k127_4153539_0 Glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 1.957e-247 780.0
LYD1_k127_4153539_1 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009604 403.0
LYD1_k127_4153539_2 PFAM Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 349.0
LYD1_k127_4153539_3 PFAM Prephenate dehydratase K04518 - 4.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000009327 266.0
LYD1_k127_4153539_4 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000001055 231.0
LYD1_k127_4158357_0 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 2.624e-233 751.0
LYD1_k127_4158357_1 Belongs to the GPI family K01810 GO:0003674,GO:0003824,GO:0004347,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033554,GO:0034404,GO:0034599,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042802,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0070887,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.3.1.9 5.056e-209 655.0
LYD1_k127_4158357_2 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 394.0
LYD1_k127_4158357_3 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000001377 172.0
LYD1_k127_4158357_4 ATP-dependent clp protease ATP-binding subunit clpA K03694 - - 0.000000000000000000000000000000001437 132.0
LYD1_k127_4158357_5 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000001484 110.0
LYD1_k127_4158357_6 Belongs to the glycosyl hydrolase family 6 K19668,K20844 - 3.2.1.55,3.2.1.91 0.000000000003697 79.0
LYD1_k127_416825_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000005631 229.0
LYD1_k127_416825_1 ABC-type transport system involved in resistance to organic solvents auxiliary component K07323 - - 0.000000000000000000000003751 112.0
LYD1_k127_416825_2 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589,K13052 - - 0.00000001469 62.0
LYD1_k127_4170370_0 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006027 552.0
LYD1_k127_4170370_1 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 305.0
LYD1_k127_4170370_2 amino acid activation for nonribosomal peptide biosynthetic process K20952 - - 0.000004588 59.0
LYD1_k127_4175092_0 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 479.0
LYD1_k127_4175092_1 belongs to the phosphoglycerate kinase family K00927,K01803 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3,5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 391.0
LYD1_k127_4175092_2 NAD(P)H dehydrogenase (quinone) activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009016 267.0
LYD1_k127_4175092_3 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000002727 209.0
LYD1_k127_4175092_4 Uncharacterized conserved protein (DUF2293) - - - 0.000000000000000000000000000000000000000000000000000001945 199.0
LYD1_k127_4175092_5 Putative heavy-metal-binding - - - 0.00000000000000000000001046 106.0
LYD1_k127_4175092_6 GtrA-like protein - - - 0.00000000005674 72.0
LYD1_k127_4175899_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 366.0
LYD1_k127_4175899_1 Riboflavin biosynthesis protein RibD K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008626 330.0
LYD1_k127_4175899_2 riboflavin synthase, alpha subunit K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000008423 196.0
LYD1_k127_4175899_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000000000000000000000000000000008488 182.0
LYD1_k127_4175899_4 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00003086 51.0
LYD1_k127_4182861_0 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 623.0
LYD1_k127_4182861_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 399.0
LYD1_k127_4189155_0 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000007453 195.0
LYD1_k127_4189155_1 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000001382 153.0
LYD1_k127_4189155_3 Domain of Unknown Function (DUF350) - - - 0.000000000000000000007576 102.0
LYD1_k127_4189155_4 FecR protein - - - 0.0003521 51.0
LYD1_k127_4193284_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1092.0
LYD1_k127_4193284_1 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000003467 176.0
LYD1_k127_4193284_2 Alg9-like mannosyltransferase family K05286 - - 0.000000000000000000000000000000000000005728 166.0
LYD1_k127_4193284_3 - - - - 0.000000002413 61.0
LYD1_k127_4193284_4 GxGYxY sequence motif in domain of unknown function N-terminal - - - 0.00000715 56.0
LYD1_k127_4218555_0 Belongs to the FtsK SpoIIIE SftA family K03466 - - 3.487e-210 686.0
LYD1_k127_4218555_1 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007919 305.0
LYD1_k127_4218555_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000001197 139.0
LYD1_k127_4218555_3 Domain of unknown function (DUF2341) - - - 0.0000000000000000000000000001422 132.0
LYD1_k127_4218555_4 Parallel beta-helix repeats - - - 0.000000000000000005348 100.0
LYD1_k127_4218632_0 Carbohydrate-selective porin, OprB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 591.0
LYD1_k127_4218632_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 321.0
LYD1_k127_4218632_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 316.0
LYD1_k127_4218632_3 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002293 286.0
LYD1_k127_4218632_4 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000007206 248.0
LYD1_k127_4218632_5 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000005387 179.0
LYD1_k127_4218632_6 Alpha galactosidase A - - - 0.000000000000000000000000000000000000000000000001185 186.0
LYD1_k127_4218632_7 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000001068 166.0
LYD1_k127_4218632_8 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000009063 143.0
LYD1_k127_422750_0 Cytochrome c-type biogenesis protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 546.0
LYD1_k127_422750_1 protein containing a von Willebrand factor type A (vWA) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006565 309.0
LYD1_k127_422750_2 SNARE associated Golgi protein K03975,K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000001237 258.0
LYD1_k127_422750_3 DIM6 NTAB family - - - 0.000000000000000000000000000000000000000000005707 171.0
LYD1_k127_422750_4 - - - - 0.00000000000000000000000000000000000000000004365 183.0
LYD1_k127_4232924_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 541.0
LYD1_k127_4232924_1 cell adhesion involved in biofilm formation - - - 0.0000000000000004294 90.0
LYD1_k127_4235305_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000003847 192.0
LYD1_k127_4237312_0 response regulator K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 590.0
LYD1_k127_4237312_1 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 285.0
LYD1_k127_4237312_2 secreted protein - - - 0.00000000000000000000000000000000000000000000000000000000000005073 225.0
LYD1_k127_4237312_3 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000000000000003383 236.0
LYD1_k127_4237312_4 Belongs to the eIF-2B alpha beta delta subunits family K03680 GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0019899,GO:0030234,GO:0031323,GO:0031326,GO:0032045,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0002976 54.0
LYD1_k127_4239496_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 4.277e-257 818.0
LYD1_k127_4239496_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 540.0
LYD1_k127_4239496_2 PCRF K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009919 401.0
LYD1_k127_4239496_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 345.0
LYD1_k127_4239496_4 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 315.0
LYD1_k127_4239496_5 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001806 275.0
LYD1_k127_4239496_6 Iron-sulfur K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000002495 196.0
LYD1_k127_4239496_7 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000000000000000000000005183 108.0
LYD1_k127_4244681_0 Tetratricopeptide repeats - - - 0.0 1156.0
LYD1_k127_4244681_1 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 309.0
LYD1_k127_4245329_0 Domain of unknown function (DUF4215) - - - 7.05e-203 660.0
LYD1_k127_4245329_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000184 252.0
LYD1_k127_4245329_2 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000001303 224.0
LYD1_k127_4245329_3 OmpA family K02557 - - 0.0000000000000000000000000000000000000000000000003136 189.0
LYD1_k127_4245329_4 Glycerate kinase family K00865 - 2.7.1.165 0.00000000000000000000000000000000000373 148.0
LYD1_k127_4245329_5 Phage derived protein Gp49-like (DUF891) - - - 0.000000000000000000000000000003286 124.0
LYD1_k127_4245329_6 Helix-turn-helix domain - - - 0.000000000000006514 80.0
LYD1_k127_4245329_7 protein kinase activity - - - 0.0005959 50.0
LYD1_k127_4252468_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004348 272.0
LYD1_k127_4252468_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000002654 235.0
LYD1_k127_4264747_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 7.346e-211 662.0
LYD1_k127_4264747_1 dTDP-glucose 4,6-dehydratase activity K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 451.0
LYD1_k127_4264747_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000002186 147.0
LYD1_k127_4266419_0 F COG0518 GMP synthase - Glutamine amidotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000118 205.0
LYD1_k127_4266419_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000002673 192.0
LYD1_k127_4266419_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000003718 189.0
LYD1_k127_4266419_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000001737 140.0
LYD1_k127_4271478_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 319.0
LYD1_k127_4271478_1 AI-2E family transporter - - - 0.000000000000000000000000000000000456 145.0
LYD1_k127_4271478_2 CsbD-like - - - 0.0002115 47.0
LYD1_k127_4276785_0 Archaea bacterial proteins of unknown function K06921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006723 269.0
LYD1_k127_4276785_1 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000002774 195.0
LYD1_k127_4276785_2 PIN domain - - - 0.00000000000000000000000000000000000002561 147.0
LYD1_k127_4276785_3 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000000000000004415 100.0
LYD1_k127_4285082_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000002021 107.0
LYD1_k127_4285082_3 Fe2 -dicitrate sensor, membrane component K07165 - - 0.0000001632 63.0
LYD1_k127_4286971_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 486.0
LYD1_k127_4286971_1 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004201 355.0
LYD1_k127_428985_0 ferredoxin-NADP+ reductase activity K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 393.0
LYD1_k127_428985_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000006275 244.0
LYD1_k127_428985_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000001154 194.0
LYD1_k127_428985_3 MatE K03327 - - 0.000000000000000000000000000000000000000004738 160.0
LYD1_k127_428985_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000001745 91.0
LYD1_k127_428985_5 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0000002642 58.0
LYD1_k127_4294950_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 606.0
LYD1_k127_4294950_1 Helicase K17675 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 576.0
LYD1_k127_4302871_0 TIGRFAM type VI secretion ATPase, ClpV1 family K11907 - - 0.0 1364.0
LYD1_k127_4302871_1 Phage late control gene D protein (GPD) K11904 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005588 447.0
LYD1_k127_4302871_2 Pfam:T6SS_VasB K11895 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 365.0
LYD1_k127_4302871_3 synthase K00647 - 2.3.1.41 0.00000000000000000000000000008667 133.0
LYD1_k127_4302871_4 Transcriptional regulator - - - 0.0000009399 62.0
LYD1_k127_4304476_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009662 625.0
LYD1_k127_4304476_1 FAD linked oxidase domain protein K00102 - 1.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 488.0
LYD1_k127_4304476_2 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000000004001 233.0
LYD1_k127_4309834_0 Belongs to the ClpA ClpB family K03694 - - 1.76e-253 804.0
LYD1_k127_4309834_1 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 302.0
LYD1_k127_4309834_2 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0050896,GO:0051087 - 0.0000000000000000000000009877 108.0
LYD1_k127_4324510_0 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 422.0
LYD1_k127_4324510_1 DisA bacterial checkpoint controller nucleotide-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002746 263.0
LYD1_k127_4324510_2 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000002155 74.0
LYD1_k127_4324510_3 Tetratricopeptide TPR_2 repeat protein - - - 0.000002887 60.0
LYD1_k127_4336257_0 Iron only hydrogenase large subunit, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003589 286.0
LYD1_k127_4336257_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000002658 163.0
LYD1_k127_4336257_2 anti-sigma regulatory factor - - - 0.0000000000000000000000000000000001519 137.0
LYD1_k127_4336257_3 PFAM DRTGG domain - - - 0.00000000000000000000000003343 111.0
LYD1_k127_4336257_4 DRTGG domain - - - 0.000000000003843 70.0
LYD1_k127_4336257_5 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335,K18331 - 1.12.1.3,1.6.5.3 0.0000000003246 62.0
LYD1_k127_435084_0 Protein of unknown function (DUF1211) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 302.0
LYD1_k127_435084_1 Serine dehydrogenase proteinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003406 298.0
LYD1_k127_435084_2 - - - - 0.000000000000000000000000000000003913 140.0
LYD1_k127_435084_3 HNH endonuclease - - - 0.000000000000008807 78.0
LYD1_k127_435084_4 - - - - 0.00000000000003018 82.0
LYD1_k127_4357476_0 Domain of unknown function (DUF3520) K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 337.0
LYD1_k127_4357476_1 domain, Protein K02674 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001069 267.0
LYD1_k127_4357476_2 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000003238 221.0
LYD1_k127_4357476_3 Anp1 - - - 0.00000000000000000000000000000000000000000003915 171.0
LYD1_k127_4357476_4 - - - - 0.0000000000000000000000000000003187 135.0
LYD1_k127_4357476_5 Domain of unknown function (DUF4215) - - - 0.00000000000000000009938 105.0
LYD1_k127_4357476_6 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.0000000004124 72.0
LYD1_k127_4359847_0 PFAM Orn DAP Arg decarboxylase 2 K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 536.0
LYD1_k127_4359847_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 0.000000000000000000000000000000000002927 143.0
LYD1_k127_4361599_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 4.357e-205 646.0
LYD1_k127_4361599_1 TIGRFAM methyltransferase FkbM - - - 0.000000000000000000000331 108.0
LYD1_k127_436437_0 Putative peptidoglycan binding domain - - - 0.0000000000000000000001199 105.0
LYD1_k127_436437_1 Domain of unknown function (DUF4157) - - - 0.0000002239 64.0
LYD1_k127_436437_2 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0001715 55.0
LYD1_k127_4364724_0 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 307.0
LYD1_k127_4364724_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004808 302.0
LYD1_k127_4364724_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000244 278.0
LYD1_k127_4364724_3 - - - - 0.0000000000000000000000000001964 119.0
LYD1_k127_4364724_4 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000002787 71.0
LYD1_k127_4364724_5 Tetratricopeptide repeat - - - 0.000003365 58.0
LYD1_k127_4364724_6 - - - - 0.0002198 49.0
LYD1_k127_4366816_0 PFAM glycoside hydrolase family 3 K05349 - 3.2.1.21 1.633e-265 842.0
LYD1_k127_4366816_1 Cellulase (glycosyl hydrolase family 5) K01218 - 3.2.1.78 0.000174 53.0
LYD1_k127_4371590_0 Sulfatase K01133 - 3.1.6.6 0.000000000000000000000000000000000000000000000000000000000000000000803 254.0
LYD1_k127_4371590_1 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000002314 162.0
LYD1_k127_4371590_10 PD-(D/E)XK nuclease superfamily - - - 0.000928 50.0
LYD1_k127_4371590_2 methyltransferase - - - 0.000000000000000000000000000000000000001955 158.0
LYD1_k127_4371590_3 - - - - 0.0000000000000000000000000002883 131.0
LYD1_k127_4371590_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000002086 128.0
LYD1_k127_4371590_5 regulation of translation K03530,K05788 - - 0.00000000000000000001579 95.0
LYD1_k127_4371590_6 PFAM glycosyl transferase family 39 - - - 0.000000000000006295 88.0
LYD1_k127_4371590_7 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.0000000000001377 87.0
LYD1_k127_4371590_9 - - - - 0.00003732 55.0
LYD1_k127_4373777_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 348.0
LYD1_k127_4373777_1 outer membrane efflux protein - - - 0.000000000000000000000000000000004211 145.0
LYD1_k127_4373777_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000377 117.0
LYD1_k127_4373777_3 PFAM regulatory protein TetR - - - 0.000000000001081 74.0
LYD1_k127_4376265_0 Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 329.0
LYD1_k127_4376265_1 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.000000000000000000000000000000000000000008076 172.0
LYD1_k127_4376265_2 - - - - 0.0000000000000000000000000000000000176 153.0
LYD1_k127_4376265_3 Nucleotidyltransferase - - - 0.0000000000000000000000001756 110.0
LYD1_k127_4376265_4 PFAM glycosyl transferase family 39 K00728 - 2.4.1.109 0.000000000000000008368 96.0
LYD1_k127_4383991_0 NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006931 474.0
LYD1_k127_4383991_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 313.0
LYD1_k127_4383991_2 ABC-2 family transporter protein - - - 0.00000000000000000000000000000000000000000000000000006303 204.0
LYD1_k127_4383991_3 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.00000000000000000000649 94.0
LYD1_k127_4386496_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 542.0
LYD1_k127_4386496_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000002432 131.0
LYD1_k127_4386496_2 PA14 - - - 0.000001604 55.0
LYD1_k127_4386496_3 DNA-templated transcription, initiation - - - 0.000192 52.0
LYD1_k127_4396040_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 507.0
LYD1_k127_4396040_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006743 349.0
LYD1_k127_4396040_2 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 314.0
LYD1_k127_4396040_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042802,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000003601 266.0
LYD1_k127_4396040_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000002286 232.0
LYD1_k127_4396351_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 479.0
LYD1_k127_4396351_1 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 332.0
LYD1_k127_4396351_2 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000003683 239.0
LYD1_k127_4396351_3 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000003724 242.0
LYD1_k127_4396351_4 - - - - 0.0000000000000000000000000000004187 141.0
LYD1_k127_4396351_5 cytochrome c biogenesis protein transmembrane region K06196 - - 0.00002828 54.0
LYD1_k127_4396653_0 PQQ-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 406.0
LYD1_k127_4396653_1 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000949 122.0
LYD1_k127_4405135_0 PQQ enzyme repeat K05889,K12132 - 1.1.2.6,2.7.11.1 0.000000000000000000000002216 116.0
LYD1_k127_4405135_1 Prokaryotic N-terminal methylation motif K02650 - - 0.00000000000000000001299 99.0
LYD1_k127_4405135_2 response to abiotic stimulus K07126 - - 0.00000000000000003468 94.0
LYD1_k127_4406654_0 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008805 516.0
LYD1_k127_4406654_1 RibD C-terminal domain - - - 0.00000000000000000000000000000000000008593 152.0
LYD1_k127_4406654_2 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding - - - 0.00000000000000000001321 98.0
LYD1_k127_4406654_4 Protein of unknown function DUF86 K07075 - - 0.00004577 51.0
LYD1_k127_4408587_0 Pyridine nucleotide-disulphide oxidoreductase - - - 1.158e-226 719.0
LYD1_k127_4408587_1 Glycosyl hydrolase family 9 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008141 469.0
LYD1_k127_4408587_2 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000002835 105.0
LYD1_k127_4408587_3 hydrolase, family 16 - - - 0.00000000000003591 87.0
LYD1_k127_4408587_4 Rhodanese Homology Domain - - - 0.0000001088 64.0
LYD1_k127_4412525_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000001297 228.0
LYD1_k127_4412525_1 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000000000000000003561 208.0
LYD1_k127_4412525_2 DnaK suppressor protein - - - 0.0000000000000000000000000000003686 128.0
LYD1_k127_4412525_3 - - - - 0.0000000000000000001076 100.0
LYD1_k127_4412525_4 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000002982 69.0
LYD1_k127_4417261_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 504.0
LYD1_k127_4417261_1 Belongs to the WrbA family K03809 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 318.0
LYD1_k127_4417261_2 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 298.0
LYD1_k127_4417261_3 Ferritin Dps family protein K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000001197 239.0
LYD1_k127_4417261_4 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000002266 246.0
LYD1_k127_4417261_5 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000002889 246.0
LYD1_k127_4417261_6 oligosaccharyl transferase activity - - - 0.0000000000000000004495 102.0
LYD1_k127_4417261_7 - - - - 0.00004291 52.0
LYD1_k127_4419179_0 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007891 294.0
LYD1_k127_4419179_1 Esterase, phb depolymerase family K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001094 295.0
LYD1_k127_4419179_2 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001476 292.0
LYD1_k127_442069_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 287.0
LYD1_k127_4432141_0 PFAM RNA-directed DNA polymerase (Reverse transcriptase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 430.0
LYD1_k127_4432141_1 Protein of unknown function (DUF1501) - - - 0.000000000000000000000000000000000000000001421 160.0
LYD1_k127_4456933_0 Belongs to the GSP D family K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 551.0
LYD1_k127_4456933_1 Response regulator, receiver K02282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 321.0
LYD1_k127_4456933_2 TIGRFAM Flp pilus assembly protein CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000005005 228.0
LYD1_k127_4456933_3 PFAM Type II secretion system protein E K02283,K03609 - - 0.000000000000000000000000000000000000000000000000000000001644 207.0
LYD1_k127_4456933_4 TadE-like protein - - - 0.00000000000007088 79.0
LYD1_k127_4475008_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 444.0
LYD1_k127_4475008_1 RelA SpoT domain protein - - - 0.0000000000000000000000000000000000000000000000000000001602 213.0
LYD1_k127_4475008_2 Ferredoxin - - - 0.000000000000000000000000000000000000000000003428 168.0
LYD1_k127_4475008_4 PEP-CTERM motif - - - 0.0000001528 65.0
LYD1_k127_4475008_5 Sterol carrier protein - - - 0.000499 50.0
LYD1_k127_4498507_0 - - - - 0.0000000000000000000000000000000000000000000000000000001861 213.0
LYD1_k127_4498529_0 Beta propeller domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 402.0
LYD1_k127_4498529_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 327.0
LYD1_k127_4518517_0 Signal transducing histidine kinase, homodimeric domain K02487,K03407,K06596 GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010605,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019220,GO:0019222,GO:0019538,GO:0019904,GO:0023014,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032879,GO:0032991,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0035556,GO:0036211,GO:0040011,GO:0040012,GO:0042221,GO:0042330,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046777,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050920,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0098561,GO:0140096,GO:1901564,GO:1901873,GO:1901875,GO:1902021,GO:2000145 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000003843 253.0
LYD1_k127_4518517_1 Two component signalling adaptor domain K03408 - - 0.00000000000000000000000001292 117.0
LYD1_k127_4518517_2 chemotaxis protein K03406 - - 0.0000002238 64.0
LYD1_k127_4518517_3 Domain of unknown function (DUF4388) - - - 0.00002264 56.0
LYD1_k127_4553309_0 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009492 331.0
LYD1_k127_4553309_1 CoA-binding protein K06929 - - 0.000000000000000000000000000000001302 133.0
LYD1_k127_4553309_2 Aldo/keto reductase family - - - 0.0000000000000002401 80.0
LYD1_k127_4553309_4 - - - - 0.000001166 50.0
LYD1_k127_4558336_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 503.0
LYD1_k127_4558336_1 OmpA family K02557 - - 0.0000000000000000000000000000000000000000000000000000007689 203.0
LYD1_k127_4558336_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000002316 176.0
LYD1_k127_4558336_3 Cell division protein FtsQ K03589 - - 0.000000000000000000000000000002055 134.0
LYD1_k127_4558336_4 2 iron, 2 sulfur cluster binding - - - 0.000000000000000000000000005975 117.0
LYD1_k127_4558336_5 endoribonuclease L-PSP - - - 0.000000000000000000004635 108.0
LYD1_k127_4558336_6 Rhodanese Homology Domain - - - 0.000000000000002953 85.0
LYD1_k127_4558336_7 Cytochrome c - - - 0.00000000000001233 88.0
LYD1_k127_4558336_8 von Willebrand factor (vWF) type A domain - - - 0.0000000000002741 82.0
LYD1_k127_4564391_0 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004408 278.0
LYD1_k127_4564391_1 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000002691 209.0
LYD1_k127_4564391_2 Methyltransferase domain - - - 0.00000000000000000000000000000004172 136.0
LYD1_k127_4564391_3 Transposase Tn5 dimerisation domain - - - 0.0004335 46.0
LYD1_k127_4572795_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 1.872e-275 854.0
LYD1_k127_4572795_1 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 1.529e-237 766.0
LYD1_k127_4572795_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006898 488.0
LYD1_k127_4572795_3 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 415.0
LYD1_k127_4572795_4 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 309.0
LYD1_k127_4572795_5 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000003085 201.0
LYD1_k127_4582067_0 Cellulase N-terminal ig-like domain K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 418.0
LYD1_k127_4582067_1 - - - - 0.0000000000000000000002871 101.0
LYD1_k127_4582067_2 Protein of unknown function (DUF433) - - - 0.0000000000000000001125 91.0
LYD1_k127_4583681_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 516.0
LYD1_k127_4583681_1 - - - - 0.0000000000000000000000000000000000000000000001265 188.0
LYD1_k127_4583681_2 Vault protein inter-alpha-trypsin domain - - - 0.000000005009 66.0
LYD1_k127_4587100_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 2.963e-269 838.0
LYD1_k127_4587100_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 331.0
LYD1_k127_4587100_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000717 125.0
LYD1_k127_460644_0 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K00833 GO:0003674,GO:0003824,GO:0004015,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 466.0
LYD1_k127_460644_1 Flagellar Motor Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 381.0
LYD1_k127_460644_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000001656 216.0
LYD1_k127_460644_3 Stigma-specific protein, Stig1 - - - 0.00000000000000000000000000000000003356 156.0
LYD1_k127_460644_4 Stigma-specific protein, Stig1 - - - 0.00000000000000000000000000001494 138.0
LYD1_k127_460644_5 - - - - 0.0000000000000000000000003129 124.0
LYD1_k127_460756_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 0.0 3904.0
LYD1_k127_460756_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 488.0
LYD1_k127_460756_4 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000002675 209.0
LYD1_k127_4611123_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 559.0
LYD1_k127_4611123_1 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 556.0
LYD1_k127_4611123_2 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 503.0
LYD1_k127_4611123_3 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002621 418.0
LYD1_k127_4616314_0 Pectinesterase K01051 - 3.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004229 291.0
LYD1_k127_4616314_1 WD40 repeats K20332 - - 0.000000000000000000000000000000000000000000000000000000000000004797 249.0
LYD1_k127_4616314_2 PFAM Archaeal ATPase - - - 0.0000000000000000000000000000000000000000000412 187.0
LYD1_k127_4616314_3 RsgA GTPase K06949 - 3.1.3.100 0.0000000000000000000000000000000000000001321 157.0
LYD1_k127_4616314_4 Cephalosporin hydroxylase - - - 0.00000000000000000000000000000005555 136.0
LYD1_k127_4616314_5 PFAM Peptidase M23 - - - 0.0000000000001828 83.0
LYD1_k127_4616314_6 Glycosyl hydrolase family 12 - - - 0.00000001246 67.0
LYD1_k127_4619767_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 610.0
LYD1_k127_4627041_0 Non-ribosomal peptide synthetase modules and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008531 509.0
LYD1_k127_4627041_1 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.00000000000000000000000000000000002979 154.0
LYD1_k127_4627041_2 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.0000000000000000000000000000001009 143.0
LYD1_k127_4630806_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000007765 239.0
LYD1_k127_4630806_1 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000404 160.0
LYD1_k127_4630806_2 competence protein ComEA helix-hairpin-helix K02237 - - 0.000001563 54.0
LYD1_k127_4630806_3 cysteine-type peptidase activity - - - 0.00001763 53.0
LYD1_k127_4635349_0 CBD_II K01728 - 4.2.2.2 0.00000000000000000000000000000000000000000000000000000000000000232 236.0
LYD1_k127_4635349_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000002016 138.0
LYD1_k127_4687270_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000217 212.0
LYD1_k127_4687270_1 - - - - 0.00000000000000000000000000000001524 132.0
LYD1_k127_4687270_2 heat shock protein binding - - - 0.000000000000000007884 98.0
LYD1_k127_4687270_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000009479 83.0
LYD1_k127_4694887_0 Belongs to the catalase family K03781 - 1.11.1.6 0.0 1088.0
LYD1_k127_4694887_1 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000007735 202.0
LYD1_k127_4694887_2 Transglycosylase associated protein - - - 0.00000000000000000000001749 112.0
LYD1_k127_4694887_3 Tetratricopeptide repeat - - - 0.000000000000000000003504 111.0
LYD1_k127_4694887_4 repeat protein - - - 0.000000000000001085 88.0
LYD1_k127_4694887_5 SNARE-like domain protein - - - 0.000001809 59.0
LYD1_k127_4694887_6 SIR2-like domain - - - 0.000002251 62.0
LYD1_k127_4717309_0 DbpA RNA binding domain K03732,K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 369.0
LYD1_k127_4759608_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000001291 249.0
LYD1_k127_4759608_1 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001964 249.0
LYD1_k127_4759608_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000007593 233.0
LYD1_k127_4759608_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000000000000000000000000201 179.0
LYD1_k127_4759608_4 - - - - 0.0000000000000000000000004162 115.0
LYD1_k127_4759608_5 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000005601 114.0
LYD1_k127_4759608_6 shikimate 3-dehydrogenase (NADP+) activity K13832 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25,4.2.1.10 0.0000000000000000006041 87.0
LYD1_k127_4759608_7 ATP-binding region ATPase domain protein K03407,K13490 - 2.7.13.3 0.000000009471 64.0
LYD1_k127_4759608_8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07669 - - 0.00000002755 64.0
LYD1_k127_4759608_9 Two component signalling adaptor domain K03408 - - 0.00000008877 64.0
LYD1_k127_4790303_0 Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 342.0
LYD1_k127_4790303_1 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000175 273.0
LYD1_k127_4790303_2 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001475 278.0
LYD1_k127_4790303_4 PFAM Radical SAM superfamily - - - 0.00000000000000000000000000000000001699 152.0
LYD1_k127_4790303_5 Pectinesterase K01051 - 3.1.1.11 0.000000000000000000000003021 115.0
LYD1_k127_479736_0 FHA domain - - - 0.000000000000000000000000000000000000000003856 179.0
LYD1_k127_479736_1 - - - - 0.00000000000000000000001478 117.0
LYD1_k127_479736_2 Vault protein inter-alpha-trypsin domain - - - 0.0000007319 63.0
LYD1_k127_4805262_0 PFAM transposase, IS4 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 347.0
LYD1_k127_4805262_1 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000000000000000000000000000002169 183.0
LYD1_k127_4805262_2 - - - - 0.0000000000000000000004411 102.0
LYD1_k127_4811290_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007537 470.0
LYD1_k127_4811290_1 HEAT repeats - - - 0.000000000000000000000000000000000000000000000001375 199.0
LYD1_k127_4811290_2 peptidyl-tyrosine sulfation - - - 0.00002618 56.0
LYD1_k127_4839402_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 370.0
LYD1_k127_4839402_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006273 324.0
LYD1_k127_4839402_2 Belongs to the P(II) protein family K04751 - - 0.0000000000000000000000000000000000000004239 151.0
LYD1_k127_4839402_3 oxidoreductase activity K07114 - - 0.0000001366 63.0
LYD1_k127_4839402_4 WD40 repeats - - - 0.00001698 58.0
LYD1_k127_4853356_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1034.0
LYD1_k127_4853356_1 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000001391 263.0
LYD1_k127_4853356_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000002065 142.0
LYD1_k127_4853356_3 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000776 136.0
LYD1_k127_4853356_4 - - - - 0.0000000003047 66.0
LYD1_k127_4853356_5 - - - - 0.0008612 50.0
LYD1_k127_4867188_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 492.0
LYD1_k127_4867188_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005065 465.0
LYD1_k127_4867188_10 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000017 130.0
LYD1_k127_4867188_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000659 125.0
LYD1_k127_4867188_12 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000003764 96.0
LYD1_k127_4867188_13 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000001008 75.0
LYD1_k127_4867188_14 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000004535 74.0
LYD1_k127_4867188_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 327.0
LYD1_k127_4867188_3 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006519 310.0
LYD1_k127_4867188_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000007597 251.0
LYD1_k127_4867188_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002937 201.0
LYD1_k127_4867188_6 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000002248 194.0
LYD1_k127_4867188_7 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000003943 167.0
LYD1_k127_4867188_8 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000001082 161.0
LYD1_k127_4867188_9 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000003912 145.0
LYD1_k127_4895292_0 Surface antigen K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001155 312.0
LYD1_k127_4895292_1 Pfam:DUF490 K09800 - - 0.00000000000000000000000000000001447 143.0
LYD1_k127_4904661_0 Beta-xylanase K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 361.0
LYD1_k127_4905638_0 Heat shock 70 kDa protein K04043 - - 0.0000000000000000000000002968 123.0
LYD1_k127_4905638_1 Protein of unknown function (DUF1549) - - - 0.0000000000359 68.0
LYD1_k127_4905638_2 Stigma-specific protein, Stig1 - - - 0.0000132 49.0
LYD1_k127_4910117_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 355.0
LYD1_k127_4910117_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003759 348.0
LYD1_k127_4910117_2 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000486 258.0
LYD1_k127_4911637_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 606.0
LYD1_k127_4911637_1 YXWGXW repeat (2 copies) - - - 0.0000000000236 74.0
LYD1_k127_4912667_0 Secreted repeat of unknown function - - - 0.000000000000000000000002415 116.0
LYD1_k127_4912667_1 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02481,K07712 - - 0.00000000000000000000001947 106.0
LYD1_k127_4912667_2 - - - - 0.0000000000000000000837 93.0
LYD1_k127_4912667_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000005968 76.0
LYD1_k127_4913589_0 ABC transporter - - - 1.133e-258 807.0
LYD1_k127_4913589_10 - - - - 0.00000000000000000000000000000000000007049 164.0
LYD1_k127_4913589_11 Appr-1-p processing domain protein - - - 0.0000000000000000000000000000000000002672 147.0
LYD1_k127_4913589_12 amino acid transport - - - 0.0000000000007114 70.0
LYD1_k127_4913589_13 - - - - 0.0000000000008578 75.0
LYD1_k127_4913589_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 342.0
LYD1_k127_4913589_3 Domain of unknown function (DUF3488) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 346.0
LYD1_k127_4913589_4 Electron transfer flavoprotein domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 320.0
LYD1_k127_4913589_5 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004233 276.0
LYD1_k127_4913589_6 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001612 289.0
LYD1_k127_4913589_7 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003376 262.0
LYD1_k127_4913589_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000006529 230.0
LYD1_k127_4913589_9 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000007905 237.0
LYD1_k127_4914925_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 611.0
LYD1_k127_4914925_1 Belongs to the glycosyl hydrolase 31 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 556.0
LYD1_k127_4914925_2 Glycosyl hydrolase family 62 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009281 332.0
LYD1_k127_4914925_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000000000000000000000000000000000000000000005157 246.0
LYD1_k127_4914925_4 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000005996 224.0
LYD1_k127_4914925_5 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.00000002527 63.0
LYD1_k127_4920565_0 ATPase activity K06027 - 3.6.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006295 510.0
LYD1_k127_4920565_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 390.0
LYD1_k127_4920565_2 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 326.0
LYD1_k127_4920565_3 Protein of unknown function (DUF1257) - - - 0.00000000000000000000402 104.0
LYD1_k127_4920565_4 cellulase activity - - - 0.0000001677 64.0
LYD1_k127_4920565_5 IgA Peptidase M64 - - - 0.0005267 53.0
LYD1_k127_4923599_0 - - - - 0.00000000000000000000000000000000000000000000001592 190.0
LYD1_k127_4923599_1 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000006797 163.0
LYD1_k127_4923599_2 Esterase PHB depolymerase K03932 - - 0.0000000000001942 78.0
LYD1_k127_4923599_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000001062 59.0
LYD1_k127_4933751_0 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000432 323.0
LYD1_k127_4933751_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000003234 219.0
LYD1_k127_5002779_0 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000007244 197.0
LYD1_k127_5002779_1 Domain of unknown function (DUF3368) - - - 0.0000000000000000001358 92.0
LYD1_k127_5002779_2 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0001104 48.0
LYD1_k127_5004745_0 pfam abc - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 475.0
LYD1_k127_5004745_1 S1 domain K00243 - - 0.0000000000000000000000000000000000000000000000000000000000000000001908 233.0
LYD1_k127_5004745_2 PD-(D/E)XK nuclease superfamily - - - 0.000009252 51.0
LYD1_k127_5018920_0 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000004128 229.0
LYD1_k127_5018920_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000002281 202.0
LYD1_k127_5018920_2 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000008504 179.0
LYD1_k127_5018920_3 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000189 147.0
LYD1_k127_5030751_0 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 550.0
LYD1_k127_5030751_1 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 475.0
LYD1_k127_5030751_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009105 473.0
LYD1_k127_5030751_3 Phosphopantetheine attachment site - - - 0.0000000002753 61.0
LYD1_k127_5039314_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 1.592e-257 812.0
LYD1_k127_5039314_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 440.0
LYD1_k127_5039314_2 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 432.0
LYD1_k127_5039314_3 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000000000000000000000000000000000000000000000000000000003822 242.0
LYD1_k127_5039314_4 Glycosyltransferase like family 2 - - - 0.000000000000003157 80.0
LYD1_k127_5039314_5 Sigma-70, region 4 - - - 0.000000001202 66.0
LYD1_k127_5039314_6 - - - - 0.000000004947 69.0
LYD1_k127_5039314_7 - - - - 0.000002384 55.0
LYD1_k127_504389_0 mannose-6-phosphate isomerase, class I K01809 - 5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000002574 238.0
LYD1_k127_504389_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000207 230.0
LYD1_k127_504389_2 Forkhead associated domain - - - 0.0000000000000000001161 100.0
LYD1_k127_504389_3 Heat shock 70 kDa protein K04043 - - 0.000000000000002226 80.0
LYD1_k127_5052178_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1434.0
LYD1_k127_5052178_1 Beta-galactosidase - - - 0.0 1095.0
LYD1_k127_5052178_10 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000001449 178.0
LYD1_k127_5052178_11 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000001748 134.0
LYD1_k127_5052178_12 HAMP domain K11383 - 2.7.13.3 0.0000000000000000000000000004069 116.0
LYD1_k127_5052178_13 Nitrogen regulatory protein P-II K04751,K04752 - - 0.000000000006848 71.0
LYD1_k127_5052178_14 Bacterial membrane protein, YfhO - - - 0.0000001057 63.0
LYD1_k127_5052178_15 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000001007 61.0
LYD1_k127_5052178_16 Belongs to the glycosyl hydrolase 30 family - - - 0.000001096 54.0
LYD1_k127_5052178_2 GXGXG motif - - - 0.0 1048.0
LYD1_k127_5052178_3 Domain of unknown function (DUF4215) - - - 1.151e-211 695.0
LYD1_k127_5052178_4 Glutamate synthase - - - 8.968e-205 651.0
LYD1_k127_5052178_5 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 526.0
LYD1_k127_5052178_6 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 293.0
LYD1_k127_5052178_7 Methylene-tetrahydrofolate reductase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000001127 249.0
LYD1_k127_5052178_8 glutamate synthase activity - - - 0.0000000000000000000000000000000000000000000000000000006485 201.0
LYD1_k127_5052178_9 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000202 205.0
LYD1_k127_5057740_0 Glycosyl hydrolases family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 482.0
LYD1_k127_5057740_1 Protein of unknown function (DUF1565) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 405.0
LYD1_k127_5057740_2 PFAM MscS Mechanosensitive ion channel K16052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009754 381.0
LYD1_k127_5057740_3 pilus organization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000517 245.0
LYD1_k127_5057740_4 Parallel beta-helix repeats - - - 0.000000000000003302 89.0
LYD1_k127_5059894_0 mannose-ethanolamine phosphotransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005571 492.0
LYD1_k127_5059894_1 alpha beta - - - 0.0000000000000000000000000000000000027 149.0
LYD1_k127_5059894_2 Major Facilitator Superfamily K03446 - - 0.00000000000000000002013 95.0
LYD1_k127_5059894_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000002618 78.0
LYD1_k127_5074811_0 smart pdz dhr glgf K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.000000000000000000000000000000000000000000000000000649 194.0
LYD1_k127_5074811_1 Cytosol aminopeptidase family, N-terminal domain - - - 0.000000000000000000000000493 111.0
LYD1_k127_5074811_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000001171 97.0
LYD1_k127_5074811_3 regulation of circadian rhythm - - - 0.00000000000000003303 95.0
LYD1_k127_5074811_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000002089 70.0
LYD1_k127_5080583_0 Enoyl-(Acyl carrier protein) reductase K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 352.0
LYD1_k127_5080583_1 Pectate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001551 246.0
LYD1_k127_5080583_2 enzyme involved in inositol metabolism K03337 - 5.3.1.30 0.000000000000000000000000000000000000000000000009144 173.0
LYD1_k127_5080583_3 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000008755 106.0
LYD1_k127_5080583_4 Dual specificity phosphatase, catalytic domain - - - 0.000000000000005388 78.0
LYD1_k127_5080583_5 - - - - 0.00000001779 67.0
LYD1_k127_508575_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 6.823e-197 634.0
LYD1_k127_508575_1 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 348.0
LYD1_k127_508575_2 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 318.0
LYD1_k127_508575_3 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004379 262.0
LYD1_k127_508575_4 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000001743 199.0
LYD1_k127_508575_5 proteolysis K19225 - 3.4.21.105 0.0000000000000000000000000000004723 136.0
LYD1_k127_5089153_0 Stage II sporulation protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 403.0
LYD1_k127_5089153_1 involved in cell wall biogenesis K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 324.0
LYD1_k127_5089153_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000004728 192.0
LYD1_k127_5089153_3 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000001072 180.0
LYD1_k127_5089153_4 PHB/PHA accumulation regulator DNA-binding domain - - - 0.00000000000000001309 85.0
LYD1_k127_5099809_0 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 384.0
LYD1_k127_5099809_1 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000002466 248.0
LYD1_k127_5099809_2 Histidine kinase - - - 0.000000000000000000000000000001082 135.0
LYD1_k127_5106269_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002764 585.0
LYD1_k127_5106269_1 structural constituent of cuticle K19721 - - 0.00003386 56.0
LYD1_k127_5117274_0 Belongs to the glycosyl hydrolase 43 family K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 555.0
LYD1_k127_5121074_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008057 263.0
LYD1_k127_5121074_1 Domain of unknown function (DUF5011) - - - 0.00000000000000000000007865 114.0
LYD1_k127_5121074_2 Tetratricopeptide repeat - - - 0.0002838 52.0
LYD1_k127_5122830_0 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006576 389.0
LYD1_k127_5122830_1 Fimbrial assembly protein (PilN) K02663 - - 0.0000000000000000000000002081 117.0
LYD1_k127_5122830_2 Pilus assembly protein, PilO K02664 - - 0.000000000002296 74.0
LYD1_k127_5122830_3 Pilus assembly protein, PilP K02665 - - 0.00000000005534 73.0
LYD1_k127_5122830_4 type IV pilus secretin PilQ K02666 - - 0.000000001785 70.0
LYD1_k127_513612_0 TPR repeat - - - 0.00000004778 64.0
LYD1_k127_513612_1 Putative metal-binding motif - - - 0.000009315 57.0
LYD1_k127_5137926_0 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 411.0
LYD1_k127_5137926_1 Coproporphyrinogen III oxidase K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 340.0
LYD1_k127_5137926_2 phosphomevalonate kinase K00938 - 2.7.4.2 0.000000001889 65.0
LYD1_k127_5138540_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009485 443.0
LYD1_k127_5138540_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 334.0
LYD1_k127_5138540_12 Protein of unknown function (DUF3618) - - - 0.00007002 48.0
LYD1_k127_5138540_2 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 299.0
LYD1_k127_5138540_3 Domain of unknown function (DUF4398) - - - 0.00000000000000000000000000000000000000000000000000000007052 207.0
LYD1_k127_5138540_4 permease K03548 - - 0.000000000000000000000000000000000000000000787 172.0
LYD1_k127_5138540_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001227 119.0
LYD1_k127_5138540_6 YtxH-like protein - - - 0.000000000000000335 82.0
LYD1_k127_5138540_7 Peptidoglycan-binding domain 1 protein - - - 0.00000000000006424 77.0
LYD1_k127_5138540_9 Domain of unknown function (DUF4398) - - - 0.0000000000588 68.0
LYD1_k127_5140967_0 COG COG0383 Alpha-mannosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004956 462.0
LYD1_k127_5140967_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000003169 211.0
LYD1_k127_5140967_2 Peptidase M1, membrane alanine aminopeptidase - - - 0.00000000000000000000000000000000000000000000003088 171.0
LYD1_k127_5140967_3 HD domain - - - 0.000000000000000000000000000000000000000000000403 189.0
LYD1_k127_5144085_0 F5 8 type C domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 364.0
LYD1_k127_5166889_0 Non-ribosomal peptide synthetase modules and related proteins - - - 3.953e-260 842.0
LYD1_k127_5167331_0 Polysaccharide deacetylase K14659,K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000000000000000000000003151 222.0
LYD1_k127_5167331_1 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000001805 218.0
LYD1_k127_5167331_2 MMPL family K07003 - - 0.00000000000000000000000002716 110.0
LYD1_k127_5167331_3 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.00000000000001558 74.0
LYD1_k127_5167331_4 Aldo/keto reductase family K19265 - - 0.0000001853 63.0
LYD1_k127_5167331_6 nucleotidyltransferase activity - - - 0.0004972 46.0
LYD1_k127_5178363_0 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000208 224.0
LYD1_k127_5178363_1 FecR protein - - - 0.0000000000000000000000000000000000000212 164.0
LYD1_k127_5180668_0 Pectate lyase - - - 0.00000000000000000000000000000000002534 155.0
LYD1_k127_5180668_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000001287 117.0
LYD1_k127_5180668_2 M6 family metalloprotease domain protein - - - 0.000000000000000000004549 101.0
LYD1_k127_5194141_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 604.0
LYD1_k127_5194141_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 584.0
LYD1_k127_5194141_2 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 535.0
LYD1_k127_5194141_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000005383 232.0
LYD1_k127_5194141_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000007705 186.0
LYD1_k127_5194141_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000002898 118.0
LYD1_k127_5194141_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000703 83.0
LYD1_k127_5194141_7 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000101 74.0
LYD1_k127_520906_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007387 314.0
LYD1_k127_520906_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 314.0
LYD1_k127_520906_2 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002588 289.0
LYD1_k127_520906_3 Zn-dependent hydrolases of the - - - 0.0000000000000000000000000000000000000000000008651 177.0
LYD1_k127_520906_5 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.000000000000000000000000000000000000001056 154.0
LYD1_k127_520906_6 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000003985 153.0
LYD1_k127_520906_7 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.000000007763 68.0
LYD1_k127_521298_0 Flavin containing amine oxidoreductase K01854 - 5.4.99.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003325 358.0
LYD1_k127_5227561_0 HNH endonuclease K07454 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005303 265.0
LYD1_k127_5227561_1 cysteine-type peptidase activity K21471,K21473,K21687 - - 0.000000000000000000000000000000000000000000003984 174.0
LYD1_k127_5247403_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 522.0
LYD1_k127_5247403_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 319.0
LYD1_k127_5247403_2 aconitate hydratase K01681 - 4.2.1.3 0.000000000000000000000000000000006662 130.0
LYD1_k127_5264796_0 AMP-binding enzyme C-terminal domain K22319 - 6.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 395.0
LYD1_k127_5264796_1 TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004916 278.0
LYD1_k127_5264796_2 Cell division protein FtsI penicillin-binding protein 2 - - - 0.00000000000000000000000000000000000000000000000001624 189.0
LYD1_k127_526552_0 - - - - 4.625e-274 861.0
LYD1_k127_526552_1 O-Glycosyl hydrolase family 30 K18579 - 3.2.1.164 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 585.0
LYD1_k127_526552_2 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 434.0
LYD1_k127_526552_3 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 384.0
LYD1_k127_526552_4 Beta-xylanase K01181 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 377.0
LYD1_k127_526552_5 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000007322 204.0
LYD1_k127_526552_6 Fibronectin type III domain protein - - - 0.000000000000000002226 87.0
LYD1_k127_526552_7 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000004936 96.0
LYD1_k127_526552_8 Fe2 -dicitrate sensor, membrane component K07165 - - 0.00000000006782 74.0
LYD1_k127_5271034_0 Glucuronate isomerase K01812 GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0019585,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0042839,GO:0042840,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0071704,GO:0072329,GO:1901575 5.3.1.12 2.258e-204 645.0
LYD1_k127_5271034_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 1.419e-202 640.0
LYD1_k127_5271034_2 tagaturonate epimerase K21619 - 5.1.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 474.0
LYD1_k127_5271034_3 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 303.0
LYD1_k127_527975_0 von Willebrand factor, type A K07114 - - 2.364e-194 629.0
LYD1_k127_527975_1 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000117 154.0
LYD1_k127_5279790_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007862 369.0
LYD1_k127_5279790_1 Belongs to the beta-ketoacyl-ACP synthases family K14668 - - 0.0000000002382 69.0
LYD1_k127_5279790_2 MotA TolQ ExbB proton channel K03561 - - 0.00000001334 62.0
LYD1_k127_5280074_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008044 407.0
LYD1_k127_5280074_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000004235 179.0
LYD1_k127_5280074_4 oxidation-reduction process - - - 0.00003317 47.0
LYD1_k127_5286113_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 326.0
LYD1_k127_5286113_1 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000004257 219.0
LYD1_k127_529276_0 Protein conserved in bacteria K09955 - - 8.323e-241 781.0
LYD1_k127_529276_1 DNA-templated transcription, initiation - - - 0.0000000000000000006108 95.0
LYD1_k127_529611_0 AIR synthase related protein, C-terminal domain K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 306.0
LYD1_k127_529611_1 Serine Threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000005764 198.0
LYD1_k127_529611_2 - - - - 0.00000000000000000000000000000000000000000002158 169.0
LYD1_k127_529611_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000003803 119.0
LYD1_k127_5322309_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000006178 69.0
LYD1_k127_5323725_0 phospholipase Carboxylesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 383.0
LYD1_k127_5323725_1 PFAM heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000003602 141.0
LYD1_k127_5323725_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000774 136.0
LYD1_k127_5323725_3 response regulator, receiver - - - 0.00000000000000000000000000005816 126.0
LYD1_k127_5323725_5 Two component transcriptional regulator, winged helix family K02483,K07667 - - 0.0000000000298 76.0
LYD1_k127_5332138_0 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 491.0
LYD1_k127_5332138_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086 441.0
LYD1_k127_5332138_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000356 271.0
LYD1_k127_5333733_0 4-alpha-glucanotransferase - - - 3.663e-197 632.0
LYD1_k127_5333733_1 Glycosyl transferase, family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 304.0
LYD1_k127_5333733_2 transmembrane transport - - - 0.00000000000000000000000000000000000000000005994 169.0
LYD1_k127_5333733_3 Domain of unknown function (DUF4404) - - - 0.000000000000000000000000000000000000001418 151.0
LYD1_k127_5333733_4 trehalose biosynthetic process K00700,K05343,K16146 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016310,GO:0034637,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046835,GO:0071704,GO:0071944,GO:1901576 2.4.1.18,2.7.1.175,3.2.1.1,5.4.99.16 0.00000013 53.0
LYD1_k127_5337678_0 two component, sigma54 specific, transcriptional regulator, Fis family K10943 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 477.0
LYD1_k127_5337678_1 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000003762 181.0
LYD1_k127_5337678_2 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000000034 116.0
LYD1_k127_5337678_3 - K07164,K22391 - 3.5.4.16 0.000078 52.0
LYD1_k127_5337678_4 Pentapeptide repeat protein - - - 0.0009458 48.0
LYD1_k127_5339174_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.665e-297 936.0
LYD1_k127_5339174_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 4.613e-204 641.0
LYD1_k127_5339174_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008044 376.0
LYD1_k127_5339174_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000001076 232.0
LYD1_k127_5345306_0 Belongs to the glycosyl hydrolase 8 (cellulase D) family K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.0000000000000000000000269 115.0
LYD1_k127_5345306_1 - - - - 0.000000000000000007089 84.0
LYD1_k127_5345306_2 CUB and sushi K17495 - - 0.00000001237 66.0
LYD1_k127_5352594_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1425.0
LYD1_k127_5352594_1 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 566.0
LYD1_k127_5352594_10 - - - - 0.0000000000657 67.0
LYD1_k127_5352594_11 PAS fold - - - 0.000000005943 63.0
LYD1_k127_5352594_12 Histidine kinase K02668,K07708 - 2.7.13.3 0.00007062 45.0
LYD1_k127_5352594_13 - - - - 0.0002068 51.0
LYD1_k127_5352594_2 Flavin containing amine oxidoreductase K01854 - 5.4.99.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 559.0
LYD1_k127_5352594_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 368.0
LYD1_k127_5352594_4 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 364.0
LYD1_k127_5352594_5 efflux transmembrane transporter activity K15725 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 325.0
LYD1_k127_5352594_6 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005413 266.0
LYD1_k127_5352594_7 Histidine kinase K02668,K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001231 277.0
LYD1_k127_5352594_8 Sigma-70, region 4 K03088 - - 0.00000000000000000000000003768 118.0
LYD1_k127_5352594_9 S-layer homology domain - - - 0.0000000000000004198 92.0
LYD1_k127_5359455_0 GAF domain K08484 - 2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 571.0
LYD1_k127_5359455_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 406.0
LYD1_k127_5359455_2 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000004965 213.0
LYD1_k127_5359455_3 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000161 215.0
LYD1_k127_5359455_4 PFAM Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000002431 181.0
LYD1_k127_5359455_6 PFAM FecR protein - - - 0.00000000000005347 77.0
LYD1_k127_5359455_7 Belongs to the glycosyl hydrolase 3 family K01207,K05349 - 3.2.1.21,3.2.1.52 0.00006763 47.0
LYD1_k127_5366514_0 alpha-glucan phosphorylase K00688 - 2.4.1.1 0.0 1325.0
LYD1_k127_5366514_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 494.0
LYD1_k127_5366514_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 317.0
LYD1_k127_5366514_3 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000006188 242.0
LYD1_k127_5366514_4 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.00000000000000000000000000000000000000000000000000008736 197.0
LYD1_k127_5366514_5 Allomyces macrogynus ATCC 38327 - - - 0.00000000000000000000009304 100.0
LYD1_k127_5366514_6 cell adhesion involved in biofilm formation - - - 0.00000000000124 80.0
LYD1_k127_5376580_0 succinyl-diaminopimelate desuccinylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 432.0
LYD1_k127_5376580_1 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000009766 241.0
LYD1_k127_5376580_2 PFAM Acyltransferase - - - 0.0000000000000000000000000000000000000004861 164.0
LYD1_k127_5376580_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000004208 78.0
LYD1_k127_5378169_0 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 389.0
LYD1_k127_5378169_1 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000001854 199.0
LYD1_k127_5378169_2 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.000000000000000000000000000000000000000000000000693 183.0
LYD1_k127_5378169_3 Cellulose 1,4-beta-cellobiosidase - - - 0.0000000000004767 79.0
LYD1_k127_5387656_0 TIGRFAM Outer membrane protein K13735,K20276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 570.0
LYD1_k127_5387656_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 300.0
LYD1_k127_5387656_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007022 275.0
LYD1_k127_5387656_3 domain protein K02476,K12373,K20952 - 2.7.13.3,3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000001317 253.0
LYD1_k127_5387656_4 DNA-binding transcription factor activity - - - 0.0000000000000000000000001265 117.0
LYD1_k127_5387656_5 nickel cation binding K04651 - - 0.000000000000000000001901 98.0
LYD1_k127_5387656_7 Arylsulfotransferase (ASST) - - - 0.000000000005458 78.0
LYD1_k127_5398755_0 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000008042 207.0
LYD1_k127_5398755_1 pathogenesis - - - 0.00000000000000000000000000000000000000004973 175.0
LYD1_k127_5398755_2 PFAM Smr protein MutS2 - - - 0.000000000000000000000000000001607 131.0
LYD1_k127_5420352_0 Protein of unknown function (DUF3443) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008153 311.0
LYD1_k127_5420352_1 Protein of unknown function (DUF2844) - - - 0.00000000002805 75.0
LYD1_k127_5420352_2 PFAM GCN5-related N-acetyltransferase K03790 - 2.3.1.128 0.0004289 50.0
LYD1_k127_5426065_0 AAA ATPase domain - - - 5.825e-309 1010.0
LYD1_k127_5426065_1 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 4.324e-223 716.0
LYD1_k127_5426065_2 Homologues of snake disintegrins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 560.0
LYD1_k127_5426065_3 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 439.0
LYD1_k127_5426065_4 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000003904 192.0
LYD1_k127_5437742_1 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008378 249.0
LYD1_k127_5439551_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 572.0
LYD1_k127_5439551_1 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 458.0
LYD1_k127_5439551_2 General secretion pathway protein C K02452 - - 0.000000000000000000000008355 102.0
LYD1_k127_5443479_0 B-1 B cell differentiation K04771 - 3.4.21.107 0.0000000000004974 79.0
LYD1_k127_5443479_1 Belongs to the peptidase S1B family - - - 0.00000001261 68.0
LYD1_k127_5443479_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000009256 58.0
LYD1_k127_5443479_3 Putative transposase - - - 0.00009517 52.0
LYD1_k127_5459962_0 Mannosyltransferase (PIG-V) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004212 287.0
LYD1_k127_5459962_1 Peptidase family M23 - - - 0.000000000000000000008112 104.0
LYD1_k127_5459962_2 Psort location CytoplasmicMembrane, score - - - 0.0000004251 58.0
LYD1_k127_5459962_3 Bacterial membrane protein, YfhO - - - 0.0003251 52.0
LYD1_k127_5459962_4 integral membrane protein - - - 0.0007513 51.0
LYD1_k127_5476446_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 2.255e-226 710.0
LYD1_k127_5476446_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 453.0
LYD1_k127_5476446_2 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 317.0
LYD1_k127_5476446_3 Cobalt uptake substrate-specific transmembrane region K02007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002571 279.0
LYD1_k127_5476446_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000008417 232.0
LYD1_k127_5476446_5 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000005493 208.0
LYD1_k127_5476446_7 Domain of unknown function (DUF4198) K10094 - - 0.000000000000000000000000000000003729 138.0
LYD1_k127_5476446_8 response to copper ion K16915 - - 0.000000000000000000000000000000007278 136.0
LYD1_k127_5476446_9 NikR C terminal nickel binding domain K07722 - - 0.000000000000000000000000000128 120.0
LYD1_k127_5478538_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 418.0
LYD1_k127_5478538_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006985 394.0
LYD1_k127_5478538_2 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000001899 270.0
LYD1_k127_5478538_3 Serine Threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004859 249.0
LYD1_k127_5478538_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002081 232.0
LYD1_k127_5478538_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000409 193.0
LYD1_k127_5478538_6 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000001513 163.0
LYD1_k127_5478538_7 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000003196 153.0
LYD1_k127_5478538_8 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000001546 138.0
LYD1_k127_5478538_9 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000001493 108.0
LYD1_k127_5482784_0 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000765 229.0
LYD1_k127_5482784_1 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000001418 183.0
LYD1_k127_5482784_2 TIGRFAM autotransporter-associated beta strand repeat protein - - - 0.0000000008907 63.0
LYD1_k127_5482784_3 PKD domain K01179,K08651 - 3.2.1.4,3.4.21.66 0.000003664 59.0
LYD1_k127_5500998_0 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006785 482.0
LYD1_k127_5500998_1 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 407.0
LYD1_k127_5500998_2 - - - - 0.00000000000000000000000000000000000000000000004241 183.0
LYD1_k127_5500998_3 regulatory protein, arsR - - - 0.0000000000000000000001176 101.0
LYD1_k127_5500998_4 TIGRFAM redox-active disulfide protein 2 - - - 0.000000000000000001971 89.0
LYD1_k127_5500998_5 YXWGXW repeat (2 copies) - - - 0.000000000000001267 84.0
LYD1_k127_5500998_6 YXWGXW repeat (2 copies) - - - 0.000009944 49.0
LYD1_k127_5500998_7 Cytochrome C biogenesis protein K06196 - - 0.0003504 44.0
LYD1_k127_5506054_0 diaminopimelate decarboxylase activity K01586,K12526 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.4,4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 445.0
LYD1_k127_5506054_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000365 283.0
LYD1_k127_5506054_2 Signal transduction histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001715 269.0
LYD1_k127_5506321_0 AcrB/AcrD/AcrF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 538.0
LYD1_k127_5506321_1 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 395.0
LYD1_k127_5506321_2 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 296.0
LYD1_k127_5506321_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000002753 154.0
LYD1_k127_5506321_4 chitin catabolic process K01921,K03933,K06919,K08086,K08307,K13381 GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005575,GO:0005623,GO:0008843,GO:0016787,GO:0016798,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 3.2.1.14,3.2.1.17,6.3.2.4 0.000000000000006591 90.0
LYD1_k127_5520609_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 304.0
LYD1_k127_5520609_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000001335 190.0
LYD1_k127_5523586_0 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000005562 142.0
LYD1_k127_5523586_1 polysaccharide deacetylase - - - 0.000000000000000000000000000005803 123.0
LYD1_k127_5529776_0 TIGRFAM decaheme c-type cytochrome, OmcA MtrC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006914 593.0
LYD1_k127_5529776_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000007697 157.0
LYD1_k127_5529776_2 Large extracellular alpha-helical protein - - - 0.000000000000000000000000000000000000179 151.0
LYD1_k127_5529776_3 Large extracellular alpha-helical protein - - - 0.00000000000251 78.0
LYD1_k127_5529776_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000005645 76.0
LYD1_k127_5529776_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00001489 57.0
LYD1_k127_5539387_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 531.0
LYD1_k127_5539387_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 330.0
LYD1_k127_5539387_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 318.0
LYD1_k127_5539387_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000004572 92.0
LYD1_k127_554133_0 C-5 cytosine-specific DNA methylase K00558 - 2.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003617 558.0
LYD1_k127_554133_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 538.0
LYD1_k127_554133_10 - - - - 0.00000000000000000000000001328 127.0
LYD1_k127_554133_11 T/G mismatch-specific endonuclease activity K07458 - - 0.00000000000000000000000001441 126.0
LYD1_k127_554133_13 - - - - 0.0004221 50.0
LYD1_k127_554133_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 486.0
LYD1_k127_554133_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 458.0
LYD1_k127_554133_4 RecQ zinc-binding K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 437.0
LYD1_k127_554133_5 Aldo/keto reductase family K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 355.0
LYD1_k127_554133_6 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000000000000000008772 203.0
LYD1_k127_554133_7 RecQ zinc-binding K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000163 191.0
LYD1_k127_554133_9 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.000000000000000000000000000000000004856 154.0
LYD1_k127_5541589_0 PFAM ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005236 407.0
LYD1_k127_5541589_1 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 372.0
LYD1_k127_5541589_2 PFAM ABC transporter K01990,K01992,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000478 214.0
LYD1_k127_5542139_0 reductase alpha subunit K00394 - 1.8.99.2 4.919e-295 925.0
LYD1_k127_5542139_1 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 3.814e-238 759.0
LYD1_k127_5542139_2 binding domain K16885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009478 424.0
LYD1_k127_5542139_3 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 316.0
LYD1_k127_5542139_4 4Fe-4S dicluster domain K16887 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003459 264.0
LYD1_k127_5542139_5 reductase beta subunit K00395 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000000001243 209.0
LYD1_k127_5542139_6 TIGRFAM Tat (twin-arginine translocation) pathway signal sequence K00184 - - 0.0000000000000000000000000000000000000000000000007447 177.0
LYD1_k127_5542139_7 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000005124 153.0
LYD1_k127_5542139_8 - - - - 0.000000000369 72.0
LYD1_k127_5544063_0 Domain of unknown function (DUF4215) - - - 5.913e-217 712.0
LYD1_k127_5544063_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 510.0
LYD1_k127_5544063_10 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.00002189 53.0
LYD1_k127_5544063_2 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 425.0
LYD1_k127_5544063_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 368.0
LYD1_k127_5544063_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000001015 243.0
LYD1_k127_5544063_5 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000003568 140.0
LYD1_k127_5544063_6 - - - - 0.000000000000000000000000000000000478 143.0
LYD1_k127_5544063_7 Methylates ribosomal protein L11 K02687 - - 0.0000000000000000000000000001605 123.0
LYD1_k127_5544063_8 - - - - 0.00000000000000000005648 90.0
LYD1_k127_5544063_9 structural constituent of ribosome K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000255 90.0
LYD1_k127_5549685_0 SMART Elongator protein 3 MiaB NifB - - - 1.838e-270 860.0
LYD1_k127_5549685_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008223 494.0
LYD1_k127_5549685_2 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 433.0
LYD1_k127_5549685_3 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004567 403.0
LYD1_k127_5549685_4 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000001744 186.0
LYD1_k127_5549685_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000001782 89.0
LYD1_k127_5549685_6 - K07039 - - 0.000000000001938 79.0
LYD1_k127_5549685_7 zinc-ribbon domain - - - 0.000683 49.0
LYD1_k127_5559425_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003542 602.0
LYD1_k127_5559425_1 Belongs to the ompA family K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 396.0
LYD1_k127_5559425_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 372.0
LYD1_k127_5559425_3 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000001195 132.0
LYD1_k127_5566554_0 Formate-dependent nitrite reductase, membrane component K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007211 292.0
LYD1_k127_5566554_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000001083 248.0
LYD1_k127_5566554_2 LamB porin K02024 - - 0.000000000000000000000000000000000000000000000000000000000000000000007109 251.0
LYD1_k127_5566554_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 0.0000000005658 64.0
LYD1_k127_5566554_4 Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system K10545,K10548,K17215 - 3.6.3.17 0.00000000587 60.0
LYD1_k127_5566554_5 Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system K10441,K10545 - 3.6.3.17 0.000005071 50.0
LYD1_k127_556884_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 413.0
LYD1_k127_556884_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000004577 149.0
LYD1_k127_5570221_0 Evidence 5 No homology to any previously reported sequences K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005181 616.0
LYD1_k127_5570221_1 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008413 325.0
LYD1_k127_5570221_2 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000000000000000000001424 210.0
LYD1_k127_5570221_3 Predicted membrane protein (DUF2079) K07778 - 2.7.13.3 0.0000000000000000000000000000000000000002251 171.0
LYD1_k127_5570221_5 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.0000000000000000000000000000001449 131.0
LYD1_k127_5570221_6 - - - - 0.000000000000000000000000005885 120.0
LYD1_k127_5570221_7 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000001066 92.0
LYD1_k127_5570221_8 - - - - 0.0001095 50.0
LYD1_k127_5571248_0 Glycosyl hydrolases family 6 K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 415.0
LYD1_k127_5571248_1 Sigma-54 dependent transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000038 234.0
LYD1_k127_5571248_2 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000008193 241.0
LYD1_k127_5571248_3 Glycosyl hydrolases family 16 - - - 0.0000000000000000000001471 97.0
LYD1_k127_5579185_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 485.0
LYD1_k127_5579185_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005853 415.0
LYD1_k127_5579185_10 - - - - 0.00000000000000002919 89.0
LYD1_k127_5579185_11 - - - - 0.00002169 55.0
LYD1_k127_5579185_2 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 398.0
LYD1_k127_5579185_3 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 337.0
LYD1_k127_5579185_4 MazG nucleotide pyrophosphohydrolase domain K02499,K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009406 289.0
LYD1_k127_5579185_5 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001062 287.0
LYD1_k127_5579185_6 Methyltransferase small domain - - - 0.00000000000000000000000000000000000000001502 164.0
LYD1_k127_5579185_7 Glycosyltransferase family 87 - - - 0.000000000000000000000000000000000119 148.0
LYD1_k127_5579185_8 Belongs to the SUA5 family K07566 GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 2.7.7.87 0.000000000000000000000000000000002591 141.0
LYD1_k127_5579185_9 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000003401 113.0
LYD1_k127_5589869_0 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000006297 207.0
LYD1_k127_5589869_1 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000002493 213.0
LYD1_k127_5589869_2 Nucleotidyl transferase K00966,K16881 - 2.7.7.13,5.4.2.8 0.0000000000000000000000000000000000000000000000000002787 198.0
LYD1_k127_5589869_3 Divalent heavy-metal cations transporter K07238 - - 0.0000000000000000000000000000000000000000001076 172.0
LYD1_k127_5589869_4 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000002546 149.0
LYD1_k127_5589869_5 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000004126 125.0
LYD1_k127_5589869_6 - - - - 0.000000000000000000000000005634 125.0
LYD1_k127_5589869_8 Periplasmic binding protein-like domain K10439 - - 0.00000001263 66.0
LYD1_k127_5589869_9 Domain of Unknown Function (DUF350) - - - 0.00000001487 59.0
LYD1_k127_5590412_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 1.843e-227 739.0
LYD1_k127_5590412_1 PFAM major facilitator superfamily MFS_1 K02429 - - 2.212e-224 704.0
LYD1_k127_5590412_10 Putative transposase - - - 0.00000000007037 64.0
LYD1_k127_5590412_11 - - - - 0.00000000007273 68.0
LYD1_k127_5590412_12 CHAT domain - - - 0.0008996 43.0
LYD1_k127_5590412_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 389.0
LYD1_k127_5590412_3 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000174 282.0
LYD1_k127_5590412_4 Spermine spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000001926 249.0
LYD1_k127_5590412_5 secreted protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001052 233.0
LYD1_k127_5590412_6 xylan catabolic process K03932 - - 0.0000000000000000000002271 101.0
LYD1_k127_5590412_7 DUF3160 - - - 0.00000000000000000002215 93.0
LYD1_k127_5590412_8 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000001939 78.0
LYD1_k127_5590412_9 sequence-specific DNA binding K02099,K13529,K15051 - 3.2.2.21 0.0000000000147 76.0
LYD1_k127_5596369_0 repeat protein - - - 0.0 2096.0
LYD1_k127_5596369_1 FHA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 417.0
LYD1_k127_5596369_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009396 326.0
LYD1_k127_5596369_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000001013 113.0
LYD1_k127_5596369_4 - - - - 0.0000000002232 65.0
LYD1_k127_5596369_5 TPR repeat - - - 0.000008612 59.0
LYD1_k127_5597841_0 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 8.693e-303 946.0
LYD1_k127_5597841_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001887 280.0
LYD1_k127_5606564_0 - - - - 0.000000000000000000006424 107.0
LYD1_k127_5616691_0 peptidase activity, acting on L-amino acid peptides - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 300.0
LYD1_k127_5616691_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000001561 139.0
LYD1_k127_5616691_2 domain, Protein - - - 0.000000000005024 77.0
LYD1_k127_5626913_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006677 535.0
LYD1_k127_5626913_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 317.0
LYD1_k127_5626913_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 309.0
LYD1_k127_5626913_3 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005229 259.0
LYD1_k127_5626913_4 - - - - 0.000000000000000000000000924 106.0
LYD1_k127_5626913_5 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000001103 105.0
LYD1_k127_5626913_6 - - - - 0.000000000001 74.0
LYD1_k127_5626913_7 Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides K02759,K03478 - 2.7.1.196,2.7.1.205,3.5.1.105 0.000000008005 67.0
LYD1_k127_5626913_8 Tetratricopeptide repeat - - - 0.0000005821 61.0
LYD1_k127_5628213_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 336.0
LYD1_k127_5652406_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005141 380.0
LYD1_k127_5652406_1 Protein of unknown function (DUF3237) - - - 0.0000000000000000000000000000000000000000000000000001981 200.0
LYD1_k127_5652406_2 protein conserved in bacteria K09955 - - 0.000000000000000000000000000002931 135.0
LYD1_k127_5652406_3 - - - - 0.000000000000000000000003413 111.0
LYD1_k127_5658712_0 Alpha amylase K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 523.0
LYD1_k127_5658712_1 hydrolase family 9 K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004968 496.0
LYD1_k127_5658712_2 Archaea bacterial proteins of unknown function K06921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 389.0
LYD1_k127_5658712_3 YCII-related domain K09780 - - 0.0000000000000000000003834 103.0
LYD1_k127_5658712_4 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000003493 92.0
LYD1_k127_5658712_5 serine-type endopeptidase activity - - - 0.0000000000902 74.0
LYD1_k127_5658712_6 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000001809 63.0
LYD1_k127_5658712_7 Belongs to the glycosyl hydrolase 30 family K01179,K01181,K01218,K19668 - 3.2.1.4,3.2.1.78,3.2.1.8,3.2.1.91 0.000000002707 69.0
LYD1_k127_5676893_0 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006562 315.0
LYD1_k127_5680216_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 494.0
LYD1_k127_5680216_1 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000001456 240.0
LYD1_k127_5680216_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000004508 208.0
LYD1_k127_5680216_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000005738 184.0
LYD1_k127_5680216_4 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.000000000000000000000000000000000000000002376 166.0
LYD1_k127_5680216_5 RDD family - - - 0.0000000000000000000000000000005136 130.0
LYD1_k127_5680216_6 PFAM Excinuclease ABC C subunit domain protein K07461 - - 0.00000000000000000000000214 104.0
LYD1_k127_5680216_7 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000001592 107.0
LYD1_k127_5680216_9 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000002225 95.0
LYD1_k127_5684275_0 Pfam:HxxPF_rpt - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 530.0
LYD1_k127_5684275_1 alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 436.0
LYD1_k127_5684275_2 Alpha-L-arabinofuranosidase C-terminus K01209 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000002903 253.0
LYD1_k127_5684275_3 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000005029 234.0
LYD1_k127_5684275_4 TIGRFAM Polyketide-type polyunsaturated fatty acid synthase, PfaA - - - 0.0000004058 55.0
LYD1_k127_5693667_0 Peptidase S9, prolyl oligopeptidase active site domain protein K01322 - 3.4.21.26 1.401e-229 730.0
LYD1_k127_5693667_1 POT family K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 440.0
LYD1_k127_5693667_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000004447 140.0
LYD1_k127_5693667_3 - - - - 0.000000000000000000000006445 104.0
LYD1_k127_570854_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 3.229e-214 693.0
LYD1_k127_570854_1 PFAM Uncharacterised protein family UPF0027 K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001974 277.0
LYD1_k127_570854_2 ABC transporter I family member K12608 - - 0.000000000000000000000000000000000000000000000000000000002811 204.0
LYD1_k127_570854_3 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000768 149.0
LYD1_k127_570854_4 Protein of unknown function (DUF1573) - - - 0.0000000000001111 83.0
LYD1_k127_5708780_0 Involved in the tonB-independent uptake of proteins K03641 - - 1.019e-291 915.0
LYD1_k127_5708780_1 protein ubiquitination - - - 0.000000000000009922 86.0
LYD1_k127_5708780_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00001344 57.0
LYD1_k127_5708821_0 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000002386 217.0
LYD1_k127_5708821_1 Family membership K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000005326 149.0
LYD1_k127_5708821_2 negative chemotaxis - - - 0.0000000000008787 74.0
LYD1_k127_5709742_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 GO:0000049,GO:0000166,GO:0000287,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009069,GO:0009070,GO:0009987,GO:0010467,GO:0016020,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046983,GO:0070905,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 550.0
LYD1_k127_5709742_1 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 557.0
LYD1_k127_5709742_2 Glycosyl hydrolase family 45 - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000005139 205.0
LYD1_k127_5715037_0 Bacterial regulatory protein, Fis family K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 582.0
LYD1_k127_5715037_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 566.0
LYD1_k127_5715037_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000001974 198.0
LYD1_k127_5715037_3 ABC1 family - - - 0.000000000000000000000000000000000000000000001695 177.0
LYD1_k127_5715037_4 - - - - 0.0000532 49.0
LYD1_k127_5720904_0 Uncharacterised protein family (UPF0158) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007832 250.0
LYD1_k127_5720904_1 PFAM Nitrate reductase gamma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000005633 221.0
LYD1_k127_5720904_2 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000001689 180.0
LYD1_k127_5720904_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000009383 178.0
LYD1_k127_5720904_4 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000008539 179.0
LYD1_k127_5720904_6 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000002507 98.0
LYD1_k127_5720904_7 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000003193 105.0
LYD1_k127_5720904_8 chaperone-mediated protein folding - - - 0.00000000000000006337 90.0
LYD1_k127_5733865_0 tRNA nucleotidyltransferase domain 2 putative K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 388.0
LYD1_k127_5733865_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000000005045 203.0
LYD1_k127_5733865_2 unusual protein kinase K03688 - - 0.0000000000000000000000000000000004647 137.0
LYD1_k127_5733865_3 Electron transfer flavoprotein domain K03521 - - 0.00003285 55.0
LYD1_k127_5735295_0 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 495.0
LYD1_k127_5735295_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 366.0
LYD1_k127_5735295_2 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007804 297.0
LYD1_k127_5735295_3 histidine kinase, HAMP - - - 0.00000000000000000000000000000000000000000000000000000003857 215.0
LYD1_k127_5735295_4 PFAM NUDIX hydrolase - - - 0.0000000000000000000000000000000000000000000000000000004572 207.0
LYD1_k127_5735295_5 isoprenoid biosynthetic process K00795,K02523,K13789 GO:0003674,GO:0003824,GO:0004161,GO:0004311,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033383,GO:0033384,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.00000000000000000000000000000000000000000000000000002132 204.0
LYD1_k127_5735295_6 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000008685 68.0
LYD1_k127_5735295_7 Belongs to the ompA family - - - 0.0000003406 64.0
LYD1_k127_5735295_8 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0002108 54.0
LYD1_k127_5742077_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 9.152e-212 674.0
LYD1_k127_5742077_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 511.0
LYD1_k127_5742077_10 PFAM regulatory protein, MerR - - - 0.000000000000000000000000183 110.0
LYD1_k127_5742077_11 Domain of unknown function (DUF4395) - - - 0.000000000000000001653 93.0
LYD1_k127_5742077_12 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000005472 61.0
LYD1_k127_5742077_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 385.0
LYD1_k127_5742077_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000001 233.0
LYD1_k127_5742077_4 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000001273 205.0
LYD1_k127_5742077_5 Lysin motif K06194 - - 0.0000000000000000000000000000000000000000000005575 175.0
LYD1_k127_5742077_6 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000002135 163.0
LYD1_k127_5742077_7 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000008591 145.0
LYD1_k127_5742077_8 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000005086 131.0
LYD1_k127_5742077_9 Competence protein - - - 0.00000000000000000000000000000007594 136.0
LYD1_k127_5757816_0 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 588.0
LYD1_k127_5757816_1 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 465.0
LYD1_k127_5757816_2 ATP-dependent helicase HrpB K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 387.0
LYD1_k127_5757816_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009274 364.0
LYD1_k127_5757816_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000000000000000000000001833 185.0
LYD1_k127_5757816_5 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000001263 161.0
LYD1_k127_5757816_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000001545 159.0
LYD1_k127_5758310_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003743 376.0
LYD1_k127_5758310_1 PFAM Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 367.0
LYD1_k127_5758310_10 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000008326 74.0
LYD1_k127_5758310_11 Tetratricopeptide repeat - - - 0.000001539 61.0
LYD1_k127_5758310_12 - - - - 0.0001086 45.0
LYD1_k127_5758310_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 300.0
LYD1_k127_5758310_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000002741 243.0
LYD1_k127_5758310_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.00000000000000000000000000000000000000000000000000006163 192.0
LYD1_k127_5758310_5 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000004419 187.0
LYD1_k127_5758310_6 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000000000000002605 153.0
LYD1_k127_5758310_7 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000004671 108.0
LYD1_k127_5758310_8 C4-type zinc ribbon domain K07164 - - 0.0000000000000001254 87.0
LYD1_k127_5764019_0 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000009079 208.0
LYD1_k127_5764019_1 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000005045 171.0
LYD1_k127_5764019_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000000000001057 161.0
LYD1_k127_5764019_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000006002 130.0
LYD1_k127_5764019_4 cell adhesion involved in biofilm formation - - - 0.000000000000000000000000001932 129.0
LYD1_k127_5764242_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005345 402.0
LYD1_k127_5764242_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001641 263.0
LYD1_k127_5764242_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000003996 229.0
LYD1_k127_5764242_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000003289 179.0
LYD1_k127_5769652_0 Arabinogalactan endo-beta-1,4-galactanase K01224 - 3.2.1.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001265 293.0
LYD1_k127_5769652_1 Kelch - - - 0.000000000000000000000000001559 124.0
LYD1_k127_5770934_0 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004199 363.0
LYD1_k127_5770934_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001311 298.0
LYD1_k127_5770934_2 Transcriptional regulator, CarD family K07736 - - 0.000000000000000000000000000000000000000000000000000000000001177 213.0
LYD1_k127_5770934_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000006446 160.0
LYD1_k127_5770934_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000001223 155.0
LYD1_k127_5770934_5 R3H domain K06346 - - 0.00000000000000000000000000002985 124.0
LYD1_k127_5770934_6 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000001067 106.0
LYD1_k127_5788243_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 482.0
LYD1_k127_5788243_1 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 291.0
LYD1_k127_5788243_2 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000009248 245.0
LYD1_k127_5788243_3 VKc - - - 0.0000000000000000000000000000000000000000000000004833 191.0
LYD1_k127_5788243_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000001421 156.0
LYD1_k127_5788243_5 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000002898 106.0
LYD1_k127_5788243_6 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000001922 104.0
LYD1_k127_5794648_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 325.0
LYD1_k127_5794648_1 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000003576 240.0
LYD1_k127_5794648_2 - - - - 0.00000000000000000000000000000000000000000000000000001342 198.0
LYD1_k127_5794648_3 dockerin type K15924 - 3.2.1.136 0.000000000000000000000000000000000000000000001085 188.0
LYD1_k127_5794648_4 Thioredoxin - - - 0.00000000000000000000000000000000000001206 157.0
LYD1_k127_5794648_6 Methyltransferase domain - - - 0.0000000000000000007127 98.0
LYD1_k127_5794648_9 PFAM Tetratricopeptide repeat - - - 0.0000006835 61.0
LYD1_k127_5812828_0 3-oxo-5-alpha-steroid 4-dehydrogenase K12343 - 1.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000001412 263.0
LYD1_k127_5812828_1 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000000000000000976 176.0
LYD1_k127_5812828_2 Fic/DOC family K07341 - - 0.0000000000000000000000000000000000188 143.0
LYD1_k127_5812828_3 epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000000004396 140.0
LYD1_k127_5812828_4 PFAM SpoVT AbrB K07172,K18842 - - 0.0000000000003606 74.0
LYD1_k127_5812828_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000001228 81.0
LYD1_k127_5815339_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007811 280.0
LYD1_k127_5815339_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000574 261.0
LYD1_k127_5815339_2 SIS domain K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000000000000004781 213.0
LYD1_k127_5815339_3 Phosphoribulokinase / Uridine kinase family K00855,K00876 - 2.7.1.19,2.7.1.48 0.000000000000000000000000000000000000000000704 173.0
LYD1_k127_5815339_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000001007 106.0
LYD1_k127_5815339_5 Domain of unknown function (DUF4388) - - - 0.000000000000000051 91.0
LYD1_k127_5815339_6 RNA-binding - - - 0.0000000000000001393 86.0
LYD1_k127_5815339_7 - - - - 0.000000000003091 73.0
LYD1_k127_5815968_0 Insulinase (Peptidase family M16) K07263 - - 2.345e-209 685.0
LYD1_k127_5815968_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 501.0
LYD1_k127_5815968_2 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000006453 239.0
LYD1_k127_5820461_0 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000000000000000000000000000000000000000001358 226.0
LYD1_k127_5820461_1 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000003969 186.0
LYD1_k127_5820461_2 PFAM Class I peptide chain release factor - - - 0.00000000000000000000000000001374 122.0
LYD1_k127_5820461_3 Dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000001474 106.0
LYD1_k127_5820461_4 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000001467 61.0
LYD1_k127_5842565_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 578.0
LYD1_k127_5842565_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 294.0
LYD1_k127_5842565_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000006669 130.0
LYD1_k127_5842565_3 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000004455 123.0
LYD1_k127_5842565_4 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000002047 103.0
LYD1_k127_5842565_5 PD-(D/E)XK nuclease superfamily - - - 0.0000002078 56.0
LYD1_k127_5843655_0 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 426.0
LYD1_k127_5843655_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 378.0
LYD1_k127_5843655_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000006298 200.0
LYD1_k127_5845844_0 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 538.0
LYD1_k127_5845844_1 RDD family - - - 0.000000000000000000000000000000009334 137.0
LYD1_k127_5845844_2 RDD family - - - 0.00000000000000000000016 99.0
LYD1_k127_5846004_0 depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006875 323.0
LYD1_k127_5846004_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000001233 98.0
LYD1_k127_5857016_0 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000245 247.0
LYD1_k127_5857016_1 RsgA GTPase K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000067 244.0
LYD1_k127_5857016_2 membrane K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000004351 245.0
LYD1_k127_5857016_3 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000001913 137.0
LYD1_k127_5857016_4 COG1253 Hemolysins and related proteins containing CBS domains - - - 0.00000000000000000000005173 114.0
LYD1_k127_5857872_0 PIN domain - - - 0.0000000000000000000000000004007 119.0
LYD1_k127_5857872_1 PFAM PIN domain - - - 0.0000000000000000000000001341 112.0
LYD1_k127_5857872_2 - - - - 0.000000000000008844 79.0
LYD1_k127_5857872_3 Antidote-toxin recognition MazE, bacterial antitoxin - - - 0.00000000001709 69.0
LYD1_k127_5859770_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 444.0
LYD1_k127_5859770_1 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007822 430.0
LYD1_k127_5859770_3 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000005704 193.0
LYD1_k127_5859770_4 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000222 188.0
LYD1_k127_5859770_6 Glycosyltransferase family 87 - - - 0.000000000000003304 89.0
LYD1_k127_5862731_0 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 289.0
LYD1_k127_5862731_1 - - - - 0.0000000000000000000000000000000000000000006427 173.0
LYD1_k127_5862731_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000001557 141.0
LYD1_k127_5862731_3 Belongs to the glycosyl hydrolase family 6 - - - 0.0000000000000000000000008537 116.0
LYD1_k127_5863781_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008318 297.0
LYD1_k127_5865387_0 helix_turn_helix, Lux Regulon K11618 - - 0.000000000000000000000000000000000000000000000000000000000000000003672 233.0
LYD1_k127_5865387_1 PhoQ Sensor - - - 0.000000000000000000000000000000000000000384 169.0
LYD1_k127_5881102_0 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 564.0
LYD1_k127_5881102_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001534 246.0
LYD1_k127_5881102_2 Belongs to the beta-ketoacyl-ACP synthases family K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000007121 185.0
LYD1_k127_5881102_3 lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000001249 173.0
LYD1_k127_5890369_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005403 311.0
LYD1_k127_5890369_1 phosphoenolpyruvate-dependent sugar phosphotransferase system K02768,K02769,K02770,K02806 - 2.7.1.202 0.0000000000000000000000000000000000000002976 159.0
LYD1_k127_5890369_2 - - - - 0.000000000000000001322 93.0
LYD1_k127_5914480_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 425.0
LYD1_k127_5914480_1 tRNA synthetases class II (D, K and N) K04568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 314.0
LYD1_k127_5914480_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003096 291.0
LYD1_k127_5914480_3 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001791 268.0
LYD1_k127_5914480_4 Preprotein translocase subunit YajC K03210 - - 0.00000000000000000000002047 103.0
LYD1_k127_5914480_5 PD-(D/E)XK nuclease superfamily - - - 0.00000003838 61.0
LYD1_k127_5915983_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 319.0
LYD1_k127_5915983_1 Glycosyl Hydrolase Family 88 - - - 0.0000000000000000000001867 102.0
LYD1_k127_5915983_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.1 0.00000000000000000002286 107.0
LYD1_k127_5915983_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000445 100.0
LYD1_k127_5915983_4 oxidoreductase activity K07114 - - 0.00000000000000003163 96.0
LYD1_k127_5915983_5 - - - - 0.0000000000000007568 88.0
LYD1_k127_5915983_6 Peptidase dimerisation domain - - - 0.00000000001743 69.0
LYD1_k127_5915983_7 Domain of unknown function (DUF4880) K07165 - - 0.00000004047 66.0
LYD1_k127_5915983_8 Hydroxysteroid dehydrogenase like 2 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 - 0.0004847 50.0
LYD1_k127_5920055_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.087e-276 867.0
LYD1_k127_5920055_1 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001047 249.0
LYD1_k127_5920055_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000004163 207.0
LYD1_k127_5920055_3 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000003454 98.0
LYD1_k127_5920055_4 cyclic nucleotide-binding - - - 0.00000000002605 74.0
LYD1_k127_5920055_5 cyclic nucleotide-binding K10914 - - 0.0005702 50.0
LYD1_k127_5928913_0 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000000000000249 171.0
LYD1_k127_5928913_1 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000006709 147.0
LYD1_k127_5928913_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000003137 116.0
LYD1_k127_5946269_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 524.0
LYD1_k127_5946269_1 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003377 284.0
LYD1_k127_5946269_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000002687 153.0
LYD1_k127_5946269_4 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000005812 98.0
LYD1_k127_5946269_5 Heat shock 70 kDa protein K04043 - - 0.00000000000003361 81.0
LYD1_k127_5952659_0 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000006648 127.0
LYD1_k127_5952659_1 - - - - 0.0000000000000000000000000002496 123.0
LYD1_k127_5952659_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000003357 87.0
LYD1_k127_5952659_3 PFAM GCN5-related N-acetyltransferase - - - 0.00000000001156 74.0
LYD1_k127_5952659_4 Putative metal-binding motif - - - 0.0001156 54.0
LYD1_k127_5955783_0 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 332.0
LYD1_k127_5955783_1 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 318.0
LYD1_k127_5955783_2 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000243 274.0
LYD1_k127_5955783_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.00000000000000000000000000000000000000000001773 166.0
LYD1_k127_5962331_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 450.0
LYD1_k127_5962331_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005748 304.0
LYD1_k127_5962331_2 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007062 252.0
LYD1_k127_5974822_0 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 489.0
LYD1_k127_5974822_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 399.0
LYD1_k127_5974822_2 Elongator protein 3, MiaB family, Radical SAM K22318 - - 0.00000000000000000000000000000006804 132.0
LYD1_k127_5974822_3 Short-chain dehydrogenase reductase Sdr - - - 0.0000000000002185 76.0
LYD1_k127_5974822_4 oxidation-reduction process - - - 0.00003317 47.0
LYD1_k127_5977013_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1776.0
LYD1_k127_5977013_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 453.0
LYD1_k127_5977013_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 411.0
LYD1_k127_5977013_3 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 374.0
LYD1_k127_5984360_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 7.626e-223 711.0
LYD1_k127_5984360_1 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002691 468.0
LYD1_k127_5984360_10 - - - - 0.0000000000000000000000000000000000305 138.0
LYD1_k127_5984360_11 - - - - 0.0000000000000000004047 100.0
LYD1_k127_5984360_12 InterPro IPR007367 - - - 0.00000000000000001864 87.0
LYD1_k127_5984360_13 GHMP kinases N terminal domain K00938 - 2.7.4.2 0.00000000000000002336 96.0
LYD1_k127_5984360_14 - - - - 0.0000000000007549 70.0
LYD1_k127_5984360_15 Beta propeller domain - - - 0.00000000000318 78.0
LYD1_k127_5984360_16 polysaccharide biosynthetic process - - - 0.0000000001294 70.0
LYD1_k127_5984360_17 resolution of meiotic recombination intermediates - - - 0.00000004902 66.0
LYD1_k127_5984360_2 PFAM IS1 transposase K07480 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 359.0
LYD1_k127_5984360_3 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005953 314.0
LYD1_k127_5984360_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003499 292.0
LYD1_k127_5984360_5 -O-antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005994 261.0
LYD1_k127_5984360_6 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000005568 220.0
LYD1_k127_5984360_7 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000675 196.0
LYD1_k127_5984360_8 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000000000001563 186.0
LYD1_k127_5984360_9 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.000000000000000000000000000000000000001998 156.0
LYD1_k127_5987404_0 PFAM Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000008674 238.0
LYD1_k127_5987404_1 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000006909 126.0
LYD1_k127_5987404_2 - - - - 0.0000000000000000000000000006174 118.0
LYD1_k127_5988975_0 tape measure - - - 0.000000000000000000000000000000007436 147.0
LYD1_k127_5988975_1 oxidoreductase activity - - - 0.00000000000000000007134 102.0
LYD1_k127_5988975_2 - - - - 0.000000000131 70.0
LYD1_k127_5988975_3 phage tail tape measure protein - - - 0.00000001358 68.0
LYD1_k127_5988975_4 domain, Protein - - - 0.000006373 49.0
LYD1_k127_5990807_0 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 319.0
LYD1_k127_5990807_1 Phosphoglucomutase K01835 - 5.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 293.0
LYD1_k127_5990807_2 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 286.0
LYD1_k127_6002154_0 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007248 465.0
LYD1_k127_6002154_1 RecQ zinc-binding K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 454.0
LYD1_k127_6002154_2 Peptidase, M16 K07263,K07623 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 458.0
LYD1_k127_6002154_3 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002594 252.0
LYD1_k127_6002154_4 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000000006725 172.0
LYD1_k127_6004110_0 Amino acid permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 493.0
LYD1_k127_6004110_1 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009536 262.0
LYD1_k127_6004110_2 phage envelope protein - - - 0.0000000001344 72.0
LYD1_k127_6004110_3 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000004425 49.0
LYD1_k127_6004110_4 Transposase - - - 0.00001948 55.0
LYD1_k127_6016602_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000188 63.0
LYD1_k127_6016602_1 Autotransporter beta-domain - - - 0.0003404 53.0
LYD1_k127_6035381_0 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 1.067e-211 667.0
LYD1_k127_6035381_1 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001118 285.0
LYD1_k127_6035381_2 PD-(D/E)XK nuclease superfamily - - - 0.0005507 48.0
LYD1_k127_604514_0 ATP synthase alpha/beta chain, C terminal domain K02111 - 3.6.3.14 6.749e-233 730.0
LYD1_k127_604514_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 4.978e-227 727.0
LYD1_k127_604514_10 - - - - 0.0000006053 55.0
LYD1_k127_604514_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 519.0
LYD1_k127_604514_3 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 411.0
LYD1_k127_604514_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009536 286.0
LYD1_k127_604514_5 Nucleoside H+ symporter K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000001342 237.0
LYD1_k127_604514_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000007427 146.0
LYD1_k127_604514_7 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000001926 117.0
LYD1_k127_604514_8 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000002068 82.0
LYD1_k127_604514_9 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000008738 68.0
LYD1_k127_6046764_0 Caspase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 476.0
LYD1_k127_6046764_1 Glycosyl transferase family 21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001506 273.0
LYD1_k127_6046764_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000003991 185.0
LYD1_k127_6046764_3 AntiSigma factor - - - 0.0000000000000000000000000000000000000001127 165.0
LYD1_k127_6046764_4 NUDIX domain - - - 0.0000000000000000000000001742 115.0
LYD1_k127_6046764_5 polysaccharide biosynthetic process - - - 0.00000000000000004096 95.0
LYD1_k127_604833_0 iron-sulfur cluster assembly K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 1.696e-246 767.0
LYD1_k127_604833_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 499.0
LYD1_k127_604833_2 FeS assembly ATPase SufC K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 334.0
LYD1_k127_604833_3 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 314.0
LYD1_k127_604833_4 SUF system FeS assembly protein, NifU family K04488 - - 0.00000000000000000000000000000000000000000000006407 182.0
LYD1_k127_604833_5 FeS assembly SUF system protein SufT - - - 0.0000000000000000000000000001177 121.0
LYD1_k127_6054185_0 alginic acid biosynthetic process K01729 - 4.2.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 516.0
LYD1_k127_6054185_1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.00000000000000000000006239 99.0
LYD1_k127_6054185_2 BrnA antitoxin of type II toxin-antitoxin system - - - 0.00000000000000000004766 93.0
LYD1_k127_607036_0 PFAM short-chain dehydrogenase reductase SDR K15314 - - 0.0 1870.0
LYD1_k127_607036_1 4'-phosphopantetheinyl transferase superfamily - - - 0.000000000000059 84.0
LYD1_k127_6070468_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 550.0
LYD1_k127_6070468_1 PilZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000145 212.0
LYD1_k127_6070468_2 Aminotransferase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000004733 213.0
LYD1_k127_6070468_3 Belongs to the SAICAR synthetase family K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000006792 48.0
LYD1_k127_6070468_4 Protein tyrosine kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.00004024 51.0
LYD1_k127_6082802_0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000006072 259.0
LYD1_k127_6082802_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000002927 150.0
LYD1_k127_6082802_2 sigma factor activity K02405 - - 0.00000000000000000000000000000000008284 141.0
LYD1_k127_6082802_3 COG4669 Type III secretory pathway, lipoprotein EscJ K03222 - - 0.00000000000000000000003773 114.0
LYD1_k127_6082802_4 - - - - 0.0000000000000000061 96.0
LYD1_k127_6082802_5 ATPases associated with a variety of cellular activities K02056,K10441 - 3.6.3.17 0.00000000000004053 77.0
LYD1_k127_6098579_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 2.899e-238 750.0
LYD1_k127_6098579_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000366 221.0
LYD1_k127_6098579_2 acetolactate synthase activity K00003,K01653 - 1.1.1.3,2.2.1.6 0.000000000000000000000000000000000000000000000001134 181.0
LYD1_k127_6098579_3 - - - - 0.0000000002376 66.0
LYD1_k127_6102491_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000854 269.0
LYD1_k127_6102491_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000000001033 175.0
LYD1_k127_6102491_2 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000009177 153.0
LYD1_k127_6102491_3 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000009908 141.0
LYD1_k127_6102491_4 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000000000000002043 134.0
LYD1_k127_6102491_5 Belongs to the glycosyl hydrolase 43 family - - - 0.00000000000000000000007335 115.0
LYD1_k127_6102491_6 PFAM Major Facilitator Superfamily K08224 - - 0.000003763 59.0
LYD1_k127_6102491_7 FR47-like protein - - - 0.0000147 54.0
LYD1_k127_6128310_0 oligoendopeptidase F K08602 - - 3.92e-222 704.0
LYD1_k127_6128310_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 415.0
LYD1_k127_6128310_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000000001256 150.0
LYD1_k127_6128310_3 Binds the 23S rRNA K02909 - - 0.00000000000000000000000008257 110.0
LYD1_k127_6128310_4 Regulatory protein, FmdB family - - - 0.000000000000002322 80.0
LYD1_k127_6130165_0 cysteine synthase A K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 488.0
LYD1_k127_6130165_1 Short-chain dehydrogenase reductase Sdr - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007489 381.0
LYD1_k127_6130165_2 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 315.0
LYD1_k127_6130165_3 Hydrolase Family 16 - - - 0.0000000000000000000000000000000000000000000002098 195.0
LYD1_k127_6130165_4 cellulose binding - - - 0.00000000000000000000000000000000000685 160.0
LYD1_k127_6130165_5 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000009808 134.0
LYD1_k127_6130165_7 PFAM PKD domain containing protein - - - 0.000000000003879 81.0
LYD1_k127_6130165_8 Peptidase family M23 - - - 0.0000000000102 77.0
LYD1_k127_6133914_0 Domain of unknown function (DUF4175) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001397 270.0
LYD1_k127_6133914_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000001147 122.0
LYD1_k127_6140053_0 3-deoxy-7-phosphoheptulonate synthase activity K00661,K03856,K04092,K04093,K04516,K04518,K14170,K14187 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 1.3.1.12,2.3.1.79,2.5.1.54,4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 572.0
LYD1_k127_6140053_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 GO:0003674,GO:0003824,GO:0003852,GO:0003985,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046912,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009698 545.0
LYD1_k127_6140053_10 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00001399 57.0
LYD1_k127_6140053_11 Protein of unknown function (DUF3618) - - - 0.00002037 54.0
LYD1_k127_6140053_2 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 369.0
LYD1_k127_6140053_3 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 375.0
LYD1_k127_6140053_4 S-acyltransferase activity - - - 0.000000000000002716 88.0
LYD1_k127_6140053_6 DnaJ domain protein K03686 - - 0.0000000000008584 81.0
LYD1_k127_6140053_7 2TM domain - - - 0.00000000003322 72.0
LYD1_k127_6140053_9 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000002308 58.0
LYD1_k127_6143764_0 Putative transposase - - - 0.00000000000000005788 89.0
LYD1_k127_6143764_1 serine-type endopeptidase activity K08654 GO:0001655,GO:0001656,GO:0001822,GO:0002009,GO:0003338,GO:0005575,GO:0005576,GO:0005604,GO:0006810,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0015031,GO:0015833,GO:0030326,GO:0031012,GO:0032501,GO:0032502,GO:0033036,GO:0035107,GO:0035108,GO:0035113,GO:0042886,GO:0043588,GO:0044420,GO:0044421,GO:0045184,GO:0048513,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051234,GO:0060021,GO:0060173,GO:0060429,GO:0060993,GO:0061618,GO:0062023,GO:0071702,GO:0071705,GO:0072001 - 0.000000005694 69.0
LYD1_k127_6143764_2 adhesin AidA-related - - - 0.0000002799 63.0
LYD1_k127_6145975_0 RHS Repeat - - - 1.168e-216 751.0
LYD1_k127_6145975_1 pilus organization K02674,K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 368.0
LYD1_k127_6145975_2 antibiotic catabolic process K21449 - - 0.0000000000000000000000000002755 136.0
LYD1_k127_6145975_3 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000003744 85.0
LYD1_k127_6158062_0 Belongs to the beta-ketoacyl-ACP synthases family K00647,K09458 - 2.3.1.179,2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 475.0
LYD1_k127_6158062_1 PFAM Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 434.0
LYD1_k127_6158062_2 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009074 287.0
LYD1_k127_6158062_3 Polysaccharide deacetylase K22278 - 3.5.1.104 0.000000000000000000006479 108.0
LYD1_k127_6167526_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 483.0
LYD1_k127_6170186_0 CBD_II K01179 - 3.2.1.4 4.365e-280 880.0
LYD1_k127_6170186_1 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 2.505e-195 619.0
LYD1_k127_6170186_2 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000006553 211.0
LYD1_k127_6170186_3 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000003671 172.0
LYD1_k127_6170186_4 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000000000000000852 94.0
LYD1_k127_6170186_5 serine threonine protein kinase - - - 0.0000000001199 74.0
LYD1_k127_6187420_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1238.0
LYD1_k127_6187420_1 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.0000000000000000000000000000000000000000000000000000000000000000000005062 248.0
LYD1_k127_6187420_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000007716 189.0
LYD1_k127_6187420_3 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.00000000000000000000000000000000000000000000000003331 185.0
LYD1_k127_6187420_4 lyase activity - - - 0.000000000000000000000000000000000000000002365 167.0
LYD1_k127_6187420_5 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000004133 124.0
LYD1_k127_6187420_6 - - - - 0.0000000000000000000000001561 123.0
LYD1_k127_6188934_0 Belongs to the glycosyl hydrolase family 6 - - - 7.808e-235 747.0
LYD1_k127_6188934_1 Domain of unknown function (DUF2088) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 326.0
LYD1_k127_6188934_2 haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006781 254.0
LYD1_k127_6193297_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 349.0
LYD1_k127_6193297_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006227 263.0
LYD1_k127_6193297_2 Glycine cleavage H-protein - - - 0.000000000000000000000003441 113.0
LYD1_k127_6193297_3 PFAM glycine cleavage H-protein - - - 0.000000000001858 78.0
LYD1_k127_6193297_4 protein conserved in bacteria - - - 0.000000001917 70.0
LYD1_k127_6195845_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000633 183.0
LYD1_k127_6195845_1 Transcription factor zinc-finger - - - 0.0000000000000000000000000000000000025 149.0
LYD1_k127_6211886_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 301.0
LYD1_k127_6211886_1 Phospholipase D. Active site motifs. K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002755 261.0
LYD1_k127_6211886_2 PFAM ABC-1 domain protein K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003053 261.0
LYD1_k127_6211886_3 Ribose/Galactose Isomerase K01808,K01819 - 5.3.1.26,5.3.1.6 0.0000000000000000000000000000001097 141.0
LYD1_k127_6211886_4 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000001592 101.0
LYD1_k127_6213524_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 359.0
LYD1_k127_6213524_1 FGGY family of carbohydrate kinases, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007695 278.0
LYD1_k127_6213524_2 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000001088 168.0
LYD1_k127_6213524_3 PFAM Tetratricopeptide repeat - - - 0.0000000000001654 76.0
LYD1_k127_6217121_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 436.0
LYD1_k127_6217121_2 PFAM ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000003105 151.0
LYD1_k127_6217121_3 Periplasmic copper-binding protein (NosD) - - - 0.0000009095 62.0
LYD1_k127_6217121_4 Putative metal-binding motif - - - 0.0001003 55.0
LYD1_k127_6230590_0 Glycosyl hydrolase 36 superfamily, catalytic domain K00702 - 2.4.1.20 6.321e-207 709.0
LYD1_k127_6230590_1 dockerin type K15924 - 3.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 310.0
LYD1_k127_6230590_2 Alpha-L-arabinofuranosidase C-terminus - - - 0.00000009269 62.0
LYD1_k127_6232019_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 526.0
LYD1_k127_6232019_1 Sigma-54 interaction domain K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004499 444.0
LYD1_k127_6232019_2 MreB/Mbl protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007121 438.0
LYD1_k127_6232019_3 Transcriptional regulator, LysR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009547 379.0
LYD1_k127_6232019_4 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000005886 235.0
LYD1_k127_6232019_5 capsule polysaccharide biosynthetic process - - - 0.000000000000000000000001522 119.0
LYD1_k127_6232019_6 Histidine kinase - - - 0.000000000007843 67.0
LYD1_k127_6232019_7 DnaJ-class molecular chaperone with C-terminal Zn finger domain - - - 0.0000000003376 68.0
LYD1_k127_6251264_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.492e-222 698.0
LYD1_k127_6251264_1 Peptidase family M1 domain K01256 - 3.4.11.2 8.526e-199 659.0
LYD1_k127_6251264_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 570.0
LYD1_k127_6251264_3 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
LYD1_k127_6251264_4 - - - - 0.000000000000000000007037 106.0
LYD1_k127_6254988_0 acyl-CoA dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 579.0
LYD1_k127_6254988_1 PFAM short-chain dehydrogenase reductase SDR K15314 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 492.0
LYD1_k127_6256369_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 441.0
LYD1_k127_6256369_1 - - - - 0.000000000000000000000000000000006902 147.0
LYD1_k127_6260082_0 Protein of unknown function (DUF1593) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003609 519.0
LYD1_k127_6260082_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 444.0
LYD1_k127_6260082_2 Spore coat - - - 0.000000000000000009459 89.0
LYD1_k127_6260082_3 PAS fold - - - 0.0000000171 63.0
LYD1_k127_6260082_4 Arylsulfotransferase (ASST) - - - 0.0001902 54.0
LYD1_k127_6262122_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 1.977e-203 650.0
LYD1_k127_6262122_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 468.0
LYD1_k127_6262122_2 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000384 246.0
LYD1_k127_6262122_3 Domain of unknown function (DUF4861) K01051 - 3.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000001632 253.0
LYD1_k127_6262122_4 PFAM glycosyl hydrolase family 88 K15532 - 3.2.1.172 0.0000000000000000000000000000000000000000000000000000000000000001192 241.0
LYD1_k127_6262122_5 enzyme involved in inositol metabolism K03337 - 5.3.1.30 0.0000000000000000000000000000000000000000000000001558 183.0
LYD1_k127_6267429_0 Glycosyl hydrolases family 28 - - - 3.563e-205 654.0
LYD1_k127_6267429_1 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000001292 228.0
LYD1_k127_6267429_2 TIGRFAM thioredoxin K03672 - 1.8.1.8 0.00000000000000000000000000000000000001082 153.0
LYD1_k127_6267429_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000001 134.0
LYD1_k127_6267429_4 Glycosyl transferase family 41 - - - 0.000000000000001173 91.0
LYD1_k127_6270947_0 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 306.0
LYD1_k127_6270947_1 Belongs to the LarC family K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002957 288.0
LYD1_k127_6270947_2 HAMP domain K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001169 276.0
LYD1_k127_6270947_3 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001902 264.0
LYD1_k127_6270947_4 PASTA K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.0000000000000000000000000000000000000000000000000006279 205.0
LYD1_k127_6270947_5 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K13924 - 2.1.1.80,3.1.1.61 0.000007689 53.0
LYD1_k127_6271333_0 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003337 244.0
LYD1_k127_6271333_1 PFAM UbiA prenyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002638 243.0
LYD1_k127_6271333_2 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000000000000000000006277 165.0
LYD1_k127_6271333_3 cell adhesion involved in biofilm formation - - - 0.0000000000000000003021 102.0
LYD1_k127_6271333_5 Calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.0005025 51.0
LYD1_k127_6271485_0 type IV pilus secretin PilQ K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 533.0
LYD1_k127_6271485_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000001614 193.0
LYD1_k127_6271485_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.00000000000000000000000000002112 127.0
LYD1_k127_6271485_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000003305 133.0
LYD1_k127_6271485_4 Roadblock/LC7 domain - - - 0.000000000000000000000001276 107.0
LYD1_k127_6277303_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 475.0
LYD1_k127_6277303_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000001741 215.0
LYD1_k127_6277303_2 regulation of canonical Wnt signaling pathway involved in osteoblast differentiation K02599 - - 0.00006771 58.0
LYD1_k127_6289222_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009218 415.0
LYD1_k127_6289222_1 Anion-transporting ATPase K01551 - 3.6.3.16 0.00000000000000000000000000000000000000000000000000000000005987 222.0
LYD1_k127_6289222_2 GyrI-like small molecule binding domain - - - 0.000000000000000000000000000000000000000000000000000004803 196.0
LYD1_k127_6289222_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000002669 139.0
LYD1_k127_6290389_0 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007687 609.0
LYD1_k127_6290389_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 397.0
LYD1_k127_6290389_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000005264 235.0
LYD1_k127_6293799_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000004545 183.0
LYD1_k127_6293799_1 Domain of Unknown Function (DUF349) - - - 0.0000003686 63.0
LYD1_k127_6294419_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 1e-323 1007.0
LYD1_k127_6294419_1 C-terminus of AA_permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 293.0
LYD1_k127_6294419_2 EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003293 285.0
LYD1_k127_6294419_3 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004216 274.0
LYD1_k127_6294419_4 C-terminus of AA_permease K03294 - - 0.00000000000000000000007321 98.0
LYD1_k127_6306008_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 495.0
LYD1_k127_6306008_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 313.0
LYD1_k127_6306008_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000001123 94.0
LYD1_k127_6306008_11 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000002768 91.0
LYD1_k127_6306008_12 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000001773 73.0
LYD1_k127_6306008_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 307.0
LYD1_k127_6306008_3 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 287.0
LYD1_k127_6306008_4 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004985 297.0
LYD1_k127_6306008_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000001975 269.0
LYD1_k127_6306008_6 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000108 259.0
LYD1_k127_6306008_7 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000001836 209.0
LYD1_k127_6306008_8 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000001069 222.0
LYD1_k127_6306008_9 Crp-like helix-turn-helix domain K10914 - - 0.00000000000000000000000001235 119.0
LYD1_k127_6306137_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03169 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361 527.0
LYD1_k127_6306137_1 Protein of unknown function (DUF2786) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 370.0
LYD1_k127_6306137_2 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 317.0
LYD1_k127_6306137_3 rRNA methyltransferase - - - 0.000000000000000000000000000000000000000000000000346 186.0
LYD1_k127_6306137_4 family 8 K15531 - 3.2.1.156 0.00000000000000000000000000000000000000001428 178.0
LYD1_k127_6306137_5 - - - - 0.0000000000001163 79.0
LYD1_k127_6317315_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 5.257e-258 809.0
LYD1_k127_6317315_1 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000001017 166.0
LYD1_k127_6317315_2 VTC domain - - - 0.00000000000000000000000000004023 126.0
LYD1_k127_6317315_3 Spore coat protein CotH - - - 0.0000000000000000000002089 111.0
LYD1_k127_6317315_4 multidrug resistance efflux pump K03543 - - 0.000003821 59.0
LYD1_k127_6317315_5 efflux transmembrane transporter activity - - - 0.00005907 53.0
LYD1_k127_6321400_0 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000009611 136.0
LYD1_k127_6321400_1 HNH nucleases - - - 0.000000005864 62.0
LYD1_k127_6326235_0 Amidohydrolase family K06015 - 3.5.1.81 6.583e-250 794.0
LYD1_k127_6326235_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000006569 190.0
LYD1_k127_6327320_0 Glycosyl hydrolases family 8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001036 259.0
LYD1_k127_6327320_1 Kazal-type serine protease inhibitor domain - - - 0.0000000000000001222 91.0
LYD1_k127_6334482_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 410.0
LYD1_k127_6334482_1 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 357.0
LYD1_k127_6334482_10 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000009114 128.0
LYD1_k127_6334482_11 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000003326 90.0
LYD1_k127_6334482_2 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001133 263.0
LYD1_k127_6334482_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000003051 228.0
LYD1_k127_6334482_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000026 214.0
LYD1_k127_6334482_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000004472 199.0
LYD1_k127_6334482_6 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000004717 194.0
LYD1_k127_6334482_7 rRNA binding K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000005845 149.0
LYD1_k127_6334482_8 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000001303 143.0
LYD1_k127_6334482_9 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000154 145.0
LYD1_k127_6338791_0 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 375.0
LYD1_k127_6338791_1 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 314.0
LYD1_k127_6338791_2 Belongs to the ABC transporter superfamily K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 310.0
LYD1_k127_6338791_3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.00000000000000000000000000000000001655 136.0
LYD1_k127_6348040_0 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000006864 239.0
LYD1_k127_6348040_1 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.0000000000000000000000000000000000000000000001524 181.0
LYD1_k127_6357371_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 477.0
LYD1_k127_6357371_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 447.0
LYD1_k127_6357371_2 dihydrofolate reductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005156 282.0
LYD1_k127_6357371_3 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006951 252.0
LYD1_k127_6357371_4 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000007032 242.0
LYD1_k127_6357371_5 Spermine spermidine synthase K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000001699 229.0
LYD1_k127_6357371_6 belongs to the thioredoxin family K00384,K03671 - 1.8.1.9 0.000000000000000000000000000000000000000007007 158.0
LYD1_k127_6357371_7 Putative peptidoglycan binding domain - - - 0.000000000000001362 85.0
LYD1_k127_6381430_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 516.0
LYD1_k127_6381430_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004821 296.0
LYD1_k127_6381430_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000001796 175.0
LYD1_k127_6381430_3 Tetratricopeptide repeat K13342 - - 0.00000004886 67.0
LYD1_k127_6381430_4 - - - - 0.0000002903 60.0
LYD1_k127_6385098_0 Methyltransferase, chemotaxis proteins K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004485 499.0
LYD1_k127_6385098_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000001656 193.0
LYD1_k127_6385098_2 hemolysin activation secretion protein - - - 0.00000000000000000000000002214 126.0
LYD1_k127_6385098_3 Belongs to the glycosyl hydrolase 13 family - - - 0.000007923 49.0
LYD1_k127_6387403_0 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 537.0
LYD1_k127_6387403_1 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000003952 241.0
LYD1_k127_6387403_2 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000004558 188.0
LYD1_k127_6387403_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000005226 184.0
LYD1_k127_6387403_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000001079 192.0
LYD1_k127_6387403_5 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000195 131.0
LYD1_k127_6387494_0 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001431 269.0
LYD1_k127_6387494_1 Alg9-like mannosyltransferase family K05286 - - 0.0000000000000000000000000000000000000000000000000000004833 213.0
LYD1_k127_6387494_2 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000006388 132.0
LYD1_k127_6387494_3 HAD-superfamily subfamily IB hydrolase, TIGR01490 - - - 0.00000000000000000000007379 109.0
LYD1_k127_6387494_4 - - - - 0.0000000000000005569 91.0
LYD1_k127_6387494_5 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000001441 83.0
LYD1_k127_6387494_6 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000001816 81.0
LYD1_k127_6387494_7 Protein of unknown function (DUF2723) - - - 0.000000000006233 79.0
LYD1_k127_6387494_8 CarboxypepD_reg-like domain - - - 0.0002885 53.0
LYD1_k127_6389022_0 Von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 576.0
LYD1_k127_6389022_1 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 350.0
LYD1_k127_6389022_2 Protein of unknown function (DUF2914) - - - 0.00002173 54.0
LYD1_k127_6390285_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 328.0
LYD1_k127_6390285_1 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 0.0000009192 60.0
LYD1_k127_639127_0 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000087 261.0
LYD1_k127_639127_1 CBD_II - - - 0.00000000000000000000000000000000000000000000000000000001179 203.0
LYD1_k127_6391552_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005432 281.0
LYD1_k127_6391552_1 Histidine kinase - - - 0.000000000000000000000000000000000000002591 153.0
LYD1_k127_6395618_0 ABC transporter K03701 - - 0.0 1217.0
LYD1_k127_6395618_1 ABC-type Na transport system ATPase component K09697 - 3.6.3.7 0.000000000000000000000000000001559 131.0
LYD1_k127_6395618_2 Belongs to the bacterial histone-like protein family - - - 0.00000000000000000000000000001314 130.0
LYD1_k127_6395618_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000008406 122.0
LYD1_k127_6395618_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000007172 120.0
LYD1_k127_6398710_0 BadF BadG BcrA BcrD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006188 436.0
LYD1_k127_6398710_1 ATPase (AAA superfamily K07133 - - 0.0000000000000000000000000000001321 138.0
LYD1_k127_6398710_2 - K03655 - 3.6.4.12 0.00004123 55.0
LYD1_k127_6400586_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 2.384e-202 641.0
LYD1_k127_6400586_1 phosphoglycolate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 290.0
LYD1_k127_6400586_2 - - - - 0.000000000000000000000000000000000000001929 156.0
LYD1_k127_6400586_3 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000003664 128.0
LYD1_k127_6400586_4 Bacterial protein of unknown function (DUF937) - - - 0.00000000000000000000000002886 117.0
LYD1_k127_6401975_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 432.0
LYD1_k127_6401975_1 phosphoribosylamine-glycine ligase activity K01945,K01955 - 6.3.4.13,6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002071 307.0
LYD1_k127_6401975_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000001534 256.0
LYD1_k127_6401975_3 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000002435 206.0
LYD1_k127_6401975_4 Tetratricopeptide repeat - - - 0.00000000000000000005277 97.0
LYD1_k127_6401975_6 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.0000000000635 75.0
LYD1_k127_6401975_7 amine dehydrogenase activity - - - 0.0000000002976 73.0
LYD1_k127_6401975_8 PFAM WD40-like beta Propeller - - - 0.00006366 55.0
LYD1_k127_6403702_0 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003179 279.0
LYD1_k127_6414067_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 382.0
LYD1_k127_6414067_1 acid phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005022 292.0
LYD1_k127_6414067_2 endonuclease exonuclease phosphatase K07004 - - 0.0000000000000000000000000000000000000000000000000001878 212.0
LYD1_k127_6414067_3 Helix-turn-helix XRE-family like proteins K21498 - - 0.00000000000000000000006098 102.0
LYD1_k127_6414067_4 PIN domain - - - 0.0000000000000000004765 93.0
LYD1_k127_6414067_5 enoyl-[acyl-carrier-protein] reductase (NADH) activity - - - 0.000000000000003152 83.0
LYD1_k127_6414067_6 Domain of unknown function (DUF4143) - - - 0.00000002369 57.0
LYD1_k127_6414067_7 nucleotidyltransferase activity - - - 0.0000003609 56.0
LYD1_k127_6414067_8 plasmid stabilization protein K21495 - - 0.00001543 51.0
LYD1_k127_6414067_9 cubilin (intrinsic factor-cobalamin receptor) K14616 - - 0.0005402 53.0
LYD1_k127_641805_0 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000000000000000000000000000000000000000000001203 225.0
LYD1_k127_641805_1 - - - - 0.00000000003792 75.0
LYD1_k127_641805_2 - - - - 0.0000000006523 62.0
LYD1_k127_641805_3 - - - - 0.00003086 51.0
LYD1_k127_6419520_0 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K10855 - 6.4.1.6 1.151e-215 693.0
LYD1_k127_6419520_1 COG0146 N-methylhydantoinase B acetone carboxylase, alpha subunit - - - 1.517e-205 659.0
LYD1_k127_6419520_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 420.0
LYD1_k127_6419520_3 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K10855 - 6.4.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 356.0
LYD1_k127_6419520_4 Acetone carboxylase gamma subunit - - - 0.0000000000000000000000000000000000000000000356 165.0
LYD1_k127_6419520_5 Transposase IS200 like - - - 0.00000000000000000000000000009909 117.0
LYD1_k127_6419520_6 Belongs to the ompA family K20276 - - 0.000000000000000000001558 107.0
LYD1_k127_6419520_7 Psort location CytoplasmicMembrane, score - - - 0.00000007386 65.0
LYD1_k127_6425005_0 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000863 609.0
LYD1_k127_6425005_1 Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 514.0
LYD1_k127_6425005_10 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000003862 106.0
LYD1_k127_6425005_11 Cytochrome c - - - 0.00000000006131 71.0
LYD1_k127_6425005_12 Acyl-coenzyme A 6-aminopenicillanic acid acyl-transferase - - - 0.000000001907 70.0
LYD1_k127_6425005_13 Transcriptional regulatory protein, C terminal - - - 0.00000002794 61.0
LYD1_k127_6425005_14 - - - - 0.0000001198 65.0
LYD1_k127_6425005_16 Homologues of snake disintegrins - - - 0.000006179 55.0
LYD1_k127_6425005_17 Tumor necrosis factor receptor superfamily member K03158,K05160,K10130 GO:0002237,GO:0002376,GO:0003674,GO:0004888,GO:0005031,GO:0005035,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008219,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010941,GO:0012501,GO:0016020,GO:0016021,GO:0019221,GO:0023052,GO:0031224,GO:0031226,GO:0032496,GO:0032501,GO:0032502,GO:0033209,GO:0033993,GO:0034097,GO:0034612,GO:0038023,GO:0042127,GO:0042221,GO:0042981,GO:0043067,GO:0043207,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071944,GO:0097190,GO:1901700 - 0.0001212 48.0
LYD1_k127_6425005_18 peptidase inhibitor activity - - - 0.0002175 52.0
LYD1_k127_6425005_2 Pollen allergen - GO:0005575,GO:0005623,GO:0009986,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 449.0
LYD1_k127_6425005_3 ATPase (AAA superfamily K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 399.0
LYD1_k127_6425005_4 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 355.0
LYD1_k127_6425005_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009196 359.0
LYD1_k127_6425005_6 CBD_II - - - 0.000000000000000000000000000000000000000000008722 178.0
LYD1_k127_6425005_7 Glycosyl hydrolases family 8 - - - 0.0000000000000000000000000000000000001279 162.0
LYD1_k127_6425005_8 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000002345 145.0
LYD1_k127_6426282_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 462.0
LYD1_k127_6426282_1 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 426.0
LYD1_k127_6426282_2 PilZ domain - - - 0.000000000000000000002045 100.0
LYD1_k127_6426282_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000009487 93.0
LYD1_k127_6426282_4 self proteolysis - - - 0.0000000000000002005 92.0
LYD1_k127_6426282_5 - - - - 0.000000000001481 78.0
LYD1_k127_6426282_6 HEAT repeats - - - 0.000000000003839 76.0
LYD1_k127_6426298_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009977 463.0
LYD1_k127_6426298_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 408.0
LYD1_k127_6426298_2 chaperone-mediated protein folding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 314.0
LYD1_k127_6426298_3 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000139 157.0
LYD1_k127_6431851_0 Hexapeptide repeat of succinyl-transferase K13018 - 2.3.1.201 0.000000000000000000000000000000000000000000000005849 178.0
LYD1_k127_6431851_1 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000001403 97.0
LYD1_k127_6431851_2 - - - - 0.000000000000000006426 98.0
LYD1_k127_6431851_3 - - - - 0.00000000002144 77.0
LYD1_k127_6431851_4 23S rRNA-intervening sequence protein - - - 0.0000095 55.0
LYD1_k127_6441349_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 2.983e-211 677.0
LYD1_k127_6441349_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 357.0
LYD1_k127_6441349_2 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 346.0
LYD1_k127_6441349_3 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 329.0
LYD1_k127_6441349_4 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000004672 214.0
LYD1_k127_6441349_5 - - - - 0.0000000000000000000000000000000000000000000003412 177.0
LYD1_k127_6441349_6 Putative transposase - - - 0.0000000000000000000000000000000003835 136.0
LYD1_k127_644899_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 3.25e-316 988.0
LYD1_k127_644899_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 565.0
LYD1_k127_644899_10 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000003179 134.0
LYD1_k127_644899_11 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000000142 82.0
LYD1_k127_644899_12 - - - - 0.00000000007374 69.0
LYD1_k127_644899_2 chlorophyll binding K16191,K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 385.0
LYD1_k127_644899_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 289.0
LYD1_k127_644899_4 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000001217 234.0
LYD1_k127_644899_5 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000006963 233.0
LYD1_k127_644899_6 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000008106 230.0
LYD1_k127_644899_7 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000227 207.0
LYD1_k127_644899_8 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000005385 185.0
LYD1_k127_644899_9 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000001192 141.0
LYD1_k127_6450442_0 ATPase associated with various cellular activities K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 441.0
LYD1_k127_6450442_1 pilus organization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008778 339.0
LYD1_k127_6450442_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000005165 222.0
LYD1_k127_6450442_3 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000002361 169.0
LYD1_k127_6450442_4 FAD dependent oxidoreductase - - - 0.00000000000000000004875 91.0
LYD1_k127_6450442_5 sodium ion export across plasma membrane - - - 0.0000000000000000005031 96.0
LYD1_k127_6450442_6 CHAP domain - - - 0.0000004661 61.0
LYD1_k127_6457509_0 Belongs to the glycosyl hydrolase 31 family K01811 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.177 1.057e-268 850.0
LYD1_k127_6457509_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 GO:0003674,GO:0003824,GO:0003852,GO:0003985,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046912,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.3.13 0.000000000000000000000000000000000003255 142.0
LYD1_k127_6457509_2 oxidoreductase activity K07114 - - 0.000000000000000000000000003845 126.0
LYD1_k127_6472247_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 2.728e-244 771.0
LYD1_k127_6472247_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008533 381.0
LYD1_k127_6472247_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000003239 162.0
LYD1_k127_6472247_3 repeat protein - - - 0.0000000000000000000008403 107.0
LYD1_k127_6486029_0 alpha-L-arabinofuranosidase K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000002603 274.0
LYD1_k127_6486029_1 Galactose oxidase, central domain - - - 0.000000000000000000000000000000000000000000000000000007225 214.0
LYD1_k127_6486029_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000000000000000000000000963 164.0
LYD1_k127_6486029_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0002886 51.0
LYD1_k127_6486029_4 - - - - 0.0006068 53.0
LYD1_k127_6491515_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP - - - 2.576e-209 656.0
LYD1_k127_6491515_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 541.0
LYD1_k127_6491515_2 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008628 425.0
LYD1_k127_6491515_3 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000001377 256.0
LYD1_k127_6491515_4 zinc ion binding K06204 - - 0.00000000000000000000000000006554 121.0
LYD1_k127_6493178_0 Biotin-protein ligase, N terminal - - - 0.0000000000000000000000000000000000002389 160.0
LYD1_k127_6493178_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000008262 141.0
LYD1_k127_6493178_2 xylan catabolic process K03932 - - 0.0000000000000000000000000000005198 139.0
LYD1_k127_6493178_3 domain, Protein - - - 0.000000000000000000000001815 115.0
LYD1_k127_6493178_4 xylan catabolic process K03932 - - 0.0000000000000000000003764 108.0
LYD1_k127_6493178_5 - - - - 0.0000004978 62.0
LYD1_k127_6493923_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 316.0
LYD1_k127_6493923_1 lactoylglutathione lyase activity K08234 - - 0.000000000000000000000000000000001491 135.0
LYD1_k127_6493923_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000003303 115.0
LYD1_k127_6493923_3 Domain of unknown function (DUF1844) - - - 0.00000000000000000005534 96.0
LYD1_k127_6493923_4 Putative transposase - - - 0.0000002203 60.0
LYD1_k127_6493923_5 Belongs to the MEMO1 family K06990 - - 0.000008215 55.0
LYD1_k127_6499153_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001332 294.0
LYD1_k127_6499153_1 Thrombospondin type 3 repeat - - - 0.000000001065 72.0
LYD1_k127_6501761_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 339.0
LYD1_k127_6501761_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000005274 261.0
LYD1_k127_6501761_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000001612 192.0
LYD1_k127_6501761_3 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000002957 176.0
LYD1_k127_6501761_4 CoA-binding protein K06929 - - 0.000000000000000000000000005333 116.0
LYD1_k127_6501761_6 Kazal type serine protease inhibitors - - - 0.0000000000000004639 92.0
LYD1_k127_6501761_7 Tetratricopeptide repeat - - - 0.00000001317 64.0
LYD1_k127_6501761_8 PD-(D/E)XK nuclease superfamily - - - 0.00008235 46.0
LYD1_k127_650562_0 COG1520 FOG WD40-like repeat - - - 0.0000000000000000000000000000000000000000000000000000002468 209.0
LYD1_k127_650562_1 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000009285 184.0
LYD1_k127_650562_2 Beta propeller domain - - - 0.0000000000147 76.0
LYD1_k127_6509567_0 metallopeptidase activity K06974 - - 0.000000000000000000000000000000000000003521 154.0
LYD1_k127_6509567_1 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.00000000000000000000000001131 118.0
LYD1_k127_6524804_0 response regulator K07714 - - 6.088e-201 638.0
LYD1_k127_6524804_1 Belongs to the glycosyl hydrolase family 6 K01181,K19551 - 3.2.1.8,4.2.2.10,4.2.2.2 0.0000000000000000000000000000000000000000000000000000000007957 218.0
LYD1_k127_6526239_0 UPF0313 protein - - - 1.076e-240 754.0
LYD1_k127_6526239_1 PHB/PHA accumulation regulator DNA-binding domain - - - 0.0000000000000000004607 91.0
LYD1_k127_6526357_0 Parallel beta-helix repeats - - - 0.0 1049.0
LYD1_k127_6526413_0 Elongator protein 3, MiaB family, Radical SAM - - - 4.322e-202 636.0
LYD1_k127_6526413_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 501.0
LYD1_k127_6526413_2 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 304.0
LYD1_k127_6526413_3 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000002435 206.0
LYD1_k127_6526413_4 TIGRFAM acyl-CoA thioester hydrolase, YbgC YbaW family K07107 - - 0.0000000000000000000000000000000000000000004013 177.0
LYD1_k127_6526413_5 Polyketide synthase dehydratase - - - 0.000000000000000000000000989 119.0
LYD1_k127_6526413_6 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000201 112.0
LYD1_k127_6526413_8 dehydratase - - - 0.000000002416 65.0
LYD1_k127_6528937_0 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003727 305.0
LYD1_k127_6528937_1 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000000000002329 211.0
LYD1_k127_6528937_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000437 184.0
LYD1_k127_6528937_3 recombinase XerD K04763 GO:0008150,GO:0040007 - 0.00000089 51.0
LYD1_k127_6529938_0 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 410.0
LYD1_k127_6529938_1 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 321.0
LYD1_k127_6529938_2 membrane organization K07277 - - 0.00000000000001066 83.0
LYD1_k127_6531946_0 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.0000000000000000000000000000000000000000000000000001083 197.0
LYD1_k127_6531946_1 Domain of unknown function (DUF4388) - - - 0.00000000000002116 78.0
LYD1_k127_6531946_2 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000001904 71.0
LYD1_k127_6539412_0 Family membership K12132 - 2.7.11.1 0.000000000000000000002848 105.0
LYD1_k127_6539412_1 TPR repeat - - - 0.00000000000005942 84.0
LYD1_k127_6539412_2 xyloglucan:xyloglucosyl transferase activity - - - 0.00000001178 61.0
LYD1_k127_6540260_0 ABC-type multidrug transport system ATPase and permease K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 627.0
LYD1_k127_6540260_1 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 422.0
LYD1_k127_6540260_10 - - - - 0.0000000000000000000001492 111.0
LYD1_k127_6540260_11 - - - - 0.000000000000000000007478 102.0
LYD1_k127_6540260_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000001624 106.0
LYD1_k127_6540260_13 signal peptide processing K00564,K13280 - 2.1.1.172,3.4.21.89 0.000000000000000008716 96.0
LYD1_k127_6540260_14 Domain of unknown function (DUF4926) - - - 0.000000000000001411 82.0
LYD1_k127_6540260_15 - - - - 0.00000000004218 69.0
LYD1_k127_6540260_16 Uncharacterised nucleotidyltransferase - - - 0.0000000001148 74.0
LYD1_k127_6540260_18 PFAM PEGA domain - - - 0.000003251 53.0
LYD1_k127_6540260_19 von Willebrand factor (vWF) type A domain - - - 0.00001507 58.0
LYD1_k127_6540260_2 4Fe-4S single cluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006325 392.0
LYD1_k127_6540260_20 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00002544 54.0
LYD1_k127_6540260_21 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0008150,GO:0040008,GO:0045926,GO:0048519,GO:0050789,GO:0065007 - 0.0005335 50.0
LYD1_k127_6540260_3 Elongator protein 3, MiaB family, Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 406.0
LYD1_k127_6540260_4 Memo-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 314.0
LYD1_k127_6540260_5 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000006113 200.0
LYD1_k127_6540260_6 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000001367 168.0
LYD1_k127_6540260_7 PFAM ATP phosphoribosyltransferase - - - 0.0000000000000000000000004915 121.0
LYD1_k127_6540260_8 Protein conserved in bacteria - - - 0.0000000000000000000000008828 116.0
LYD1_k127_6540260_9 PFAM coenzyme PQQ synthesis - - - 0.000000000000000000000008097 103.0
LYD1_k127_6540843_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 506.0
LYD1_k127_6540843_1 dTDP-4-dehydrorhamnose 3,5-epimerase activity K19068 - 1.1.1.367 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 416.0
LYD1_k127_6540843_2 PFAM Chromate transporter K07240 - - 0.0000000000000000000000000000000002515 137.0
LYD1_k127_6540848_0 ADP-glyceromanno-heptose 6-epimerase activity K01709 - 4.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007974 477.0
LYD1_k127_6540848_1 C-methyltransferase C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003925 461.0
LYD1_k127_6540848_10 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000002585 189.0
LYD1_k127_6540848_11 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000002899 176.0
LYD1_k127_6540848_2 Glucose-1-phosphate cytidylyltransferase K00978 - 2.7.7.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006016 373.0
LYD1_k127_6540848_3 glycosyl transferase group 1 K12993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 366.0
LYD1_k127_6540848_4 Cephalosporin hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 347.0
LYD1_k127_6540848_5 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 343.0
LYD1_k127_6540848_6 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 317.0
LYD1_k127_6540848_7 Involved in glycosylation steps downstream of mono-O- methyl-glycosyl-p-hydroxybenzoic acid derivative (p-HBAD I) and 2- O-methyl-rhamnosyl-phenolphthiocerol dimycocerosate (mycoside B) during the p-hydroxybenzoic acid derivatives (p-HBAD) and glycosylated phenolphthiocerol dimycocerosates (PGL) biosynthesis - GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001921 282.0
LYD1_k127_6540848_8 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K00067,K01790 - 1.1.1.133,5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000004277 222.0
LYD1_k127_6540848_9 PFAM NAD dependent epimerase dehydratase family K19180 - 1.1.1.339 0.000000000000000000000000000000000000000000000000000009299 203.0
LYD1_k127_6544065_0 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000001533 240.0
LYD1_k127_6544065_1 GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000006401 169.0
LYD1_k127_6544065_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000000007329 152.0
LYD1_k127_6544065_3 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.000000000000000000000000000008022 128.0
LYD1_k127_6545045_0 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01740 - 2.5.1.49 2.379e-216 683.0
LYD1_k127_6545045_1 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009032 437.0
LYD1_k127_6545045_2 Leucine-rich repeat (LRR) protein K13730 - - 0.0000000000000000000000000000000000000000000002833 186.0
LYD1_k127_6545045_3 Cro/C1-type HTH DNA-binding domain - - - 0.00000000000000000000000000000000000003284 157.0
LYD1_k127_6545045_4 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000004556 145.0
LYD1_k127_6545045_5 Tetratricopeptide repeat - - - 0.0000000000000000000005181 109.0
LYD1_k127_6551666_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002105 281.0
LYD1_k127_6551666_1 CBD_II K01728 - 4.2.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000004987 253.0
LYD1_k127_6551666_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000003946 135.0
LYD1_k127_6551666_3 iron ion homeostasis - - - 0.000000000000000000004171 107.0
LYD1_k127_6551669_0 Glycosyl hydrolases family 43 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009205 455.0
LYD1_k127_6551669_1 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 395.0
LYD1_k127_6551669_2 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 345.0
LYD1_k127_6551669_3 Poly(3-hydroxybutyrate) depolymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009958 276.0
LYD1_k127_6551669_4 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005174 264.0
LYD1_k127_6551669_5 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000001881 241.0
LYD1_k127_6551669_6 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000002088 233.0
LYD1_k127_656745_0 PFAM Annexin repeat - - - 0.000000000000000000000000000000831 141.0
LYD1_k127_656745_2 LysM domain - - - 0.00000000000000009862 89.0
LYD1_k127_656745_3 Gram-negative-bacterium-type cell outer membrane assembly - - - 0.000000006679 63.0
LYD1_k127_6576926_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 394.0
LYD1_k127_6576926_1 Belongs to the FPP GGPP synthase family K00805,K02523 - 2.5.1.30,2.5.1.90 0.0000000000000000000000000000000000000000000000000001177 193.0
LYD1_k127_6576926_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000007266 181.0
LYD1_k127_6576926_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000001748 151.0
LYD1_k127_6576926_4 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.00003213 56.0
LYD1_k127_6576926_5 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0009174 44.0
LYD1_k127_6582753_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004619 283.0
LYD1_k127_6586269_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000003813 140.0
LYD1_k127_6586269_1 Glycosyl hydrolases family 8 - - - 0.0000000000000000000000000004152 131.0
LYD1_k127_6586269_2 - - - - 0.0000007494 62.0
LYD1_k127_6590182_0 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 526.0
LYD1_k127_6590182_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 531.0
LYD1_k127_6590182_2 PFAM bifunctional deaminase-reductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 299.0
LYD1_k127_6590182_3 protein conserved in bacteria K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000003031 260.0
LYD1_k127_6590182_4 Glycosyltransferase family 28 N-terminal domain - - - 0.00005964 49.0
LYD1_k127_6594018_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009134 605.0
LYD1_k127_6594018_1 Belongs to the glycosyl hydrolase 8 (cellulase D) family K15531 - 3.2.1.156 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 329.0
LYD1_k127_6594018_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008096 316.0
LYD1_k127_6594018_3 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000005228 277.0
LYD1_k127_6594018_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000001483 172.0
LYD1_k127_6594018_5 family 8 K15531 - 3.2.1.156 0.00000000000000000000000006344 109.0
LYD1_k127_660552_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007747 381.0
LYD1_k127_660552_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000002022 74.0
LYD1_k127_6610525_0 repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006949 414.0
LYD1_k127_6610525_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 313.0
LYD1_k127_6610525_2 PspA/IM30 family K03969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004898 270.0
LYD1_k127_6610525_3 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000006593 164.0
LYD1_k127_6610525_4 Involved in the degradation of specific anti-sigma factors - - - 0.000000000000000000000000000000000000001462 155.0
LYD1_k127_6610525_6 - - - - 0.00000000000005357 79.0
LYD1_k127_6610525_7 FHA domain - - - 0.000001934 57.0
LYD1_k127_66110_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 340.0
LYD1_k127_66110_1 efflux transmembrane transporter activity - - - 0.0000000000000000001073 103.0
LYD1_k127_6622072_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 473.0
LYD1_k127_6622072_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 464.0
LYD1_k127_6622072_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000001471 123.0
LYD1_k127_6622072_3 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.000000000000000000008628 98.0
LYD1_k127_6622379_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 301.0
LYD1_k127_6626258_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 449.0
LYD1_k127_6626258_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000991 400.0
LYD1_k127_6626258_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 381.0
LYD1_k127_6626258_3 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 340.0
LYD1_k127_6626258_4 PFAM ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001971 274.0
LYD1_k127_6626258_5 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002118 277.0
LYD1_k127_6626258_6 PFAM amino acid-binding ACT domain protein - - - 0.00000000000000000000000000000000000000000000005672 173.0
LYD1_k127_6626258_8 domain protein K20276 - - 0.0008997 53.0
LYD1_k127_664225_0 Domain of unknown function (DUF1846) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 524.0
LYD1_k127_664225_1 extracellular matrix structural constituent - - - 0.0000000000000000000000000000000000000003953 171.0
LYD1_k127_664225_2 M6 family metalloprotease domain protein - - - 0.00000000000000001898 93.0
LYD1_k127_664408_0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000005187 238.0
LYD1_k127_664408_1 TonB-dependent Receptor Plug Domain K02014 - - 0.000000000000008067 87.0
LYD1_k127_664408_2 Phosphatidylinositol-glycan-specific phospholipase D K01127 GO:0001501,GO:0001503,GO:0001525,GO:0001568,GO:0001667,GO:0001944,GO:0002040,GO:0002042,GO:0002062,GO:0002253,GO:0002376,GO:0002429,GO:0002430,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004620,GO:0004621,GO:0004630,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006109,GO:0006464,GO:0006497,GO:0006501,GO:0006505,GO:0006507,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008081,GO:0008150,GO:0008152,GO:0008285,GO:0008286,GO:0009058,GO:0009059,GO:0009268,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010243,GO:0010562,GO:0010594,GO:0010595,GO:0010604,GO:0010631,GO:0010632,GO:0010634,GO:0010646,GO:0010647,GO:0010675,GO:0010676,GO:0010692,GO:0010694,GO:0010817,GO:0010866,GO:0010867,GO:0010896,GO:0010897,GO:0010906,GO:0010907,GO:0010921,GO:0010922,GO:0010941,GO:0010942,GO:0010982,GO:0010983,GO:0010984,GO:0010986,GO:0014070,GO:0016247,GO:0016298,GO:0016477,GO:0016787,GO:0016788,GO:0017080,GO:0018410,GO:0019216,GO:0019220,GO:0019222,GO:0019538,GO:0019637,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030334,GO:0030335,GO:0031012,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0032024,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0033993,GO:0034014,GO:0034284,GO:0034645,GO:0035239,GO:0035295,GO:0035303,GO:0035306,GO:0035690,GO:0035701,GO:0035774,GO:0036211,GO:0036314,GO:0036315,GO:0040011,GO:0040012,GO:0040017,GO:0042127,GO:0042157,GO:0042158,GO:0042176,GO:0042221,GO:0042268,GO:0042493,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043434,GO:0043534,GO:0043542,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044421,GO:0044424,GO:0044464,GO:0045732,GO:0045833,GO:0045834,GO:0045862,GO:0045913,GO:0045919,GO:0045937,GO:0046470,GO:0046486,GO:0046488,GO:0046883,GO:0046887,GO:0046889,GO:0046890,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0050994,GO:0050995,GO:0051043,GO:0051044,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051216,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051592,GO:0051674,GO:0051716,GO:0060255,GO:0060341,GO:0061178,GO:0061448,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070633,GO:0070723,GO:0070887,GO:0071214,GO:0071241,GO:0071248,GO:0071277,GO:0071281,GO:0071282,GO:0071310,GO:0071375,GO:0071396,GO:0071397,GO:0071401,GO:0071407,GO:0071417,GO:0071467,GO:0071495,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0090087,GO:0090130,GO:0090132,GO:0090207,GO:0090208,GO:0090209,GO:0090276,GO:0090277,GO:0097164,GO:0097241,GO:0097305,GO:0097306,GO:0098772,GO:0104004,GO:1900076,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903509,GO:1903530,GO:1903532,GO:1904951,GO:2000145,GO:2000147 3.1.4.50 0.000002754 60.0
LYD1_k127_66523_0 epimerase K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 325.0
LYD1_k127_66523_1 Polysaccharide biosynthesis protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 326.0
LYD1_k127_66523_2 ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008552 273.0
LYD1_k127_66523_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.00000000000000000000000000000000000000000001561 168.0
LYD1_k127_66523_4 phosphoribosyl-AMP cyclohydrolase activity K01496,K01497,K01814,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.5.4.25,3.6.1.31,5.3.1.16 0.00000000000000000000000000000007288 127.0
LYD1_k127_666300_0 Rod shape-determining protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 544.0
LYD1_k127_666300_1 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 370.0
LYD1_k127_666300_2 Involved in formation and maintenance of cell shape K03570 - - 0.000000000000000000000000000000000000000000000000000000001201 217.0
LYD1_k127_666300_3 peptidyl-prolyl cis-trans isomerase activity K03770 - 5.2.1.8 0.00000000000000000000000001867 121.0
LYD1_k127_6665746_0 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 432.0
LYD1_k127_6665746_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 303.0
LYD1_k127_66665_0 Alginate lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 411.0
LYD1_k127_66665_1 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000000000001599 149.0
LYD1_k127_6671356_0 General secretion pathway protein F K02455,K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 422.0
LYD1_k127_6671356_1 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000000000000000000000000000002244 211.0
LYD1_k127_6671356_2 Type II secretion system (T2SS), protein J K02459 - - 0.0000000000000000000000000000003269 138.0
LYD1_k127_6671356_3 Type IV pilus assembly protein PilM; K02461 - - 0.00000000000000000000000000008048 130.0
LYD1_k127_6671356_4 General secretion pathway protein G K02456 - - 0.00000000000000002369 87.0
LYD1_k127_6671356_5 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.0000000000000117 75.0
LYD1_k127_6671356_6 Prokaryotic N-terminal methylation motif K02457 - - 0.0000000000002715 82.0
LYD1_k127_6671356_7 Prokaryotic N-terminal methylation motif K02458 - - 0.000000000007181 78.0
LYD1_k127_6673135_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000007272 128.0
LYD1_k127_6673135_1 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000004236 116.0
LYD1_k127_6673135_2 Domain of unknown function (DUF4388) - - - 0.000000000000514 78.0
LYD1_k127_6673750_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 339.0
LYD1_k127_6673750_1 Spore coat - - - 0.00000000000000000000000000000000000000000000000000000000000009614 222.0
LYD1_k127_6673835_0 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment - - - 0.00000000000000000000000000000000000000000000000001064 203.0
LYD1_k127_6673835_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000001917 119.0
LYD1_k127_6673835_2 cellulose binding - - - 0.0000000001237 74.0
LYD1_k127_6692578_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000001449 229.0
LYD1_k127_6692578_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000001498 162.0
LYD1_k127_6692578_2 - - - - 0.00000000000000201 85.0
LYD1_k127_6704793_0 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 367.0
LYD1_k127_6704793_1 Lysylphosphatidylglycerol synthase TM region - - - 0.00000000000000000000000002656 122.0
LYD1_k127_6704863_0 amine dehydrogenase activity - - - 1.261e-276 870.0
LYD1_k127_6704863_1 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007698 301.0
LYD1_k127_6711363_0 copper-translocating P-type ATPase K17686 - 3.6.3.54 4.637e-269 850.0
LYD1_k127_6711363_1 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 550.0
LYD1_k127_6711363_2 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009926 403.0
LYD1_k127_6711363_3 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000111 210.0
LYD1_k127_6711363_4 peptidase U62 modulator of DNA gyrase - - - 0.00000000000000000000000000000000000000000000000002322 190.0
LYD1_k127_6721585_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 481.0
LYD1_k127_6721585_1 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 295.0
LYD1_k127_6721585_3 Belongs to the peptidase M16 family K07263 - - 0.0003039 45.0
LYD1_k127_6750387_0 cyanophycin K03802 - 6.3.2.29,6.3.2.30 2.038e-234 753.0
LYD1_k127_6750387_1 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 4.578e-230 730.0
LYD1_k127_6760050_1 von Willebrand factor, type A K07114 - - 0.00000000000000000000001696 105.0
LYD1_k127_6760050_2 general secretion pathway protein G K02456 - - 0.000000006103 63.0
LYD1_k127_6769666_0 4-alpha-D-((1- 4)-alpha-D-glucano)trehalose trehalohydrolase K01236 - 3.2.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 485.0
LYD1_k127_6769666_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 447.0
LYD1_k127_6769666_2 1,4-alpha-glucan branching enzyme activity K01236 - 3.2.1.141 0.0000000000000000000000000000000002191 140.0
LYD1_k127_6769666_3 SMART alpha amylase catalytic sub domain K00705,K06044 - 2.4.1.25,5.4.99.15 0.000000000004275 70.0
LYD1_k127_6769666_4 - - - - 0.000000000005162 72.0
LYD1_k127_6770534_1 - - - - 0.00000002078 62.0
LYD1_k127_6770534_2 oxidoreductase activity K07114 - - 0.0000005306 62.0
LYD1_k127_6770782_0 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 4.69e-268 833.0
LYD1_k127_6770782_1 FR47-like protein - - - 0.000000000000000000000000000000000000001065 152.0
LYD1_k127_6770782_2 - - - - 0.000000000000000000000000000000000000003802 154.0
LYD1_k127_6770782_3 PFAM OsmC family protein K04063 - - 0.000000000000000000000000000000000000007911 149.0
LYD1_k127_6777207_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 2.513e-222 707.0
LYD1_k127_6777207_1 ATPase activity K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 331.0
LYD1_k127_6777207_2 Transport permease protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007774 282.0
LYD1_k127_6777207_3 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000639 196.0
LYD1_k127_6777207_4 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000003717 171.0
LYD1_k127_6777207_5 Putative regulatory protein - - - 0.0000000000000004994 79.0
LYD1_k127_6785541_0 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 386.0
LYD1_k127_6785541_1 - - - - 0.00000000000000000000000000000000000000000000008792 180.0
LYD1_k127_678666_0 - - - - 0.000000000000000000000000000000000000000000000000000000000003287 229.0
LYD1_k127_678666_1 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000003978 197.0
LYD1_k127_678666_2 - - - - 0.00000000000000000000000000000006472 145.0
LYD1_k127_678666_3 EamA-like transporter family - - - 0.0000000000000000000000000009775 128.0
LYD1_k127_6793960_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009135 617.0
LYD1_k127_6793960_1 Bacterial regulatory protein, Fis family K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 516.0
LYD1_k127_6793960_2 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000648 173.0
LYD1_k127_6793960_3 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000003102 156.0
LYD1_k127_6793960_4 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000731 139.0
LYD1_k127_679578_0 Gp5 C-terminal repeat (3 copies) K11904 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006569 611.0
LYD1_k127_679578_1 - - - - 0.0000000000000000000000000000000000000000000000000000000007971 207.0
LYD1_k127_679578_2 Immunity protein 49 - - - 0.000000000000000000000000000000000000000000000000000002876 205.0
LYD1_k127_679578_3 3-oxoacyl-[acyl-carrier-protein] synthase activity K00647 - 2.3.1.41 0.00000000000000000008584 98.0
LYD1_k127_6806279_0 COG3509 Poly(3-hydroxybutyrate) depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000108 206.0
LYD1_k127_682376_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 327.0
LYD1_k127_682376_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003056 268.0
LYD1_k127_682376_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000001657 212.0
LYD1_k127_682376_3 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000005679 197.0
LYD1_k127_682376_4 transport system involved in gliding motility, auxiliary component - - - 0.0000000000000000000000000000000002524 150.0
LYD1_k127_682376_5 phosphate transporter K03306 - - 0.000000000000000000001901 98.0
LYD1_k127_682376_6 Domain of unknown function (DUF4340) - - - 0.00006767 49.0
LYD1_k127_696691_0 B-1 B cell differentiation K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002515 584.0
LYD1_k127_696691_1 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 499.0
LYD1_k127_696691_11 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000009034 99.0
LYD1_k127_696691_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004339 442.0
LYD1_k127_696691_3 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 288.0
LYD1_k127_696691_4 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 301.0
LYD1_k127_696691_5 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005688 276.0
LYD1_k127_696691_6 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000001924 208.0
LYD1_k127_696691_7 - - - - 0.00000000000000000000000000000000000000000000000000004952 203.0
LYD1_k127_696691_9 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.000000000000000000000000004194 120.0
LYD1_k127_709937_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000001328 130.0
LYD1_k127_709937_1 nuclease activity - - - 0.0000000000000000000005645 97.0
LYD1_k127_709937_2 alkaline phosphatase activity - - - 0.000000000000000000000897 105.0
LYD1_k127_71090_0 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003035 286.0
LYD1_k127_71090_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000009807 266.0
LYD1_k127_71090_2 domain, Protein - - - 0.000000000000000008459 97.0
LYD1_k127_71090_3 TPR repeat - - - 0.00000000001705 76.0
LYD1_k127_733133_0 RecT family - - - 0.00000000000000000000000000000000000000000000000000000052 207.0
LYD1_k127_733133_1 - - - - 0.0000000000000000000000000000000000001173 156.0
LYD1_k127_733133_2 DNA recombination K03546 - - 0.0000006833 60.0
LYD1_k127_735920_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1563.0
LYD1_k127_735920_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 585.0
LYD1_k127_735920_2 PHP domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007753 464.0
LYD1_k127_735920_3 Biotin-lipoyl like K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 442.0
LYD1_k127_735920_4 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000001602 229.0
LYD1_k127_735920_5 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 GO:0000003,GO:0000272,GO:0003006,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009828,GO:0009845,GO:0009900,GO:0009987,GO:0010047,GO:0010154,GO:0010412,GO:0015923,GO:0016043,GO:0016052,GO:0016787,GO:0016798,GO:0016985,GO:0016998,GO:0022414,GO:0032501,GO:0032502,GO:0032504,GO:0042545,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044464,GO:0045229,GO:0046355,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0061458,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090351,GO:1901575,GO:1990059 3.2.1.78 0.00000000000000000000000000000000000000000000000000001877 208.0
LYD1_k127_735920_6 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000001981 154.0
LYD1_k127_735920_7 Methyltransferase FkbM domain - - - 0.000000000000005518 88.0
LYD1_k127_735920_8 ABC-type sugar transport system periplasmic component K17205 - - 0.0000000004351 71.0
LYD1_k127_739111_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.208e-197 624.0
LYD1_k127_739111_1 Rad51 K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 525.0
LYD1_k127_739111_2 Serine/threonine phosphatases, family 2C, catalytic domain K01090 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003898 339.0
LYD1_k127_739111_3 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 317.0
LYD1_k127_749964_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 561.0
LYD1_k127_749964_1 protein conserved in bacteria K11893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 429.0
LYD1_k127_749964_2 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000003032 229.0
LYD1_k127_749964_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000002305 218.0
LYD1_k127_749964_4 Type VI secretion system protein DotU K11892 - - 0.0000000000000000000000000000000000000000000002301 175.0
LYD1_k127_749964_6 PFAM Glycosyl transferase family 2 - - - 0.000000000000001838 88.0
LYD1_k127_749964_7 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07281,K07291 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0016780 2.7.7.74,2.7.8.34 0.0000000000001791 83.0
LYD1_k127_749964_8 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 K11906 - - 0.000002217 57.0
LYD1_k127_749964_9 Lysylphosphatidylglycerol synthase TM region - - - 0.0000501 55.0
LYD1_k127_761996_0 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001752 268.0
LYD1_k127_763134_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 538.0
LYD1_k127_763134_1 glutathione-regulated potassium exporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007197 439.0
LYD1_k127_763134_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 381.0
LYD1_k127_763134_3 dihydroxy-acid dehydratase activity K01687 - 4.2.1.9 0.000000000003851 67.0
LYD1_k127_763134_4 PFAM Dynamin family protein - - - 0.0000002583 58.0
LYD1_k127_793676_0 Cellulase (glycosyl hydrolase family 5) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 426.0
LYD1_k127_793676_1 Sigma-54 factor interaction domain-containing protein K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 363.0
LYD1_k127_793676_2 response to heat K07090 - - 0.0000000000000000000000000000000000000000000000000000000005909 205.0
LYD1_k127_793676_3 Four helix bundle sensory module for signal transduction - - - 0.000000000000000000000000000004168 134.0
LYD1_k127_793676_4 membrane - - - 0.0000000000000000000000000003573 118.0
LYD1_k127_793676_5 cheY-homologous receiver domain - - - 0.000000000003221 77.0
LYD1_k127_793676_6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000005531 64.0
LYD1_k127_804283_0 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 413.0
LYD1_k127_804283_1 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002527 279.0
LYD1_k127_804283_2 Lipocalin-like domain K03098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003896 261.0
LYD1_k127_804283_3 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000002627 222.0
LYD1_k127_804283_4 domain protein K20276 - - 0.0001489 55.0
LYD1_k127_809414_0 Periplasmic protein TonB links inner and outer membranes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007815 253.0
LYD1_k127_809414_1 transposition K07497 - - 0.0000000000000000000000000000000000000002073 153.0
LYD1_k127_811526_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001261 263.0
LYD1_k127_811526_1 Copper/zinc superoxide dismutase (SODC) K04565 - 1.15.1.1 0.00000000000000000000000000000000000000002529 176.0
LYD1_k127_811526_2 4Fe-4S binding domain - - - 0.0000000000000000000022 96.0
LYD1_k127_811526_3 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.0000000000000000001085 98.0
LYD1_k127_811526_4 Nucleotidyltransferase - - - 0.00000000000001519 81.0
LYD1_k127_811526_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000002009 79.0
LYD1_k127_811526_6 HAD-hyrolase-like - - - 0.000008291 56.0
LYD1_k127_832245_0 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 497.0
LYD1_k127_832245_1 BPG-independent PGAM N-terminus (iPGM_N) K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003769 275.0
LYD1_k127_832245_4 - - - - 0.0003117 53.0
LYD1_k127_845315_0 Protein conserved in bacteria K09955 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 529.0
LYD1_k127_845315_1 PFAM SPFH domain Band 7 family K07192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 387.0
LYD1_k127_845315_2 prohibitin homologues K07192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 361.0
LYD1_k127_845315_3 Inositol monophosphatase K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000001743 235.0
LYD1_k127_845315_4 - - - - 0.000000000000000001043 94.0
LYD1_k127_845315_5 - - - - 0.00000000000000001626 89.0
LYD1_k127_845315_6 - - - - 0.00001744 53.0
LYD1_k127_846215_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 321.0
LYD1_k127_846215_1 AsmA family K07289 - - 0.00000000000000000000000000000000000000000000000000000009635 224.0
LYD1_k127_846215_2 belongs to the thioredoxin family K03671,K05838 - - 0.0000000000000000000000000000000000000000000000009422 187.0
LYD1_k127_846215_3 PIN domain K07063 - - 0.0000000000000000000000000000009682 126.0
LYD1_k127_846215_4 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.00000000000000000005519 91.0
LYD1_k127_846215_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000302,GO:0000988,GO:0000990,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009410,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009889,GO:0010035,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0043207,GO:0043254,GO:0044087,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0075136,GO:0080090,GO:0090034,GO:0097159,GO:0140110,GO:1901363,GO:1901700,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000005691 91.0
LYD1_k127_846215_6 PQQ-like domain - - - 0.00000004402 66.0
LYD1_k127_884345_0 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005811 505.0
LYD1_k127_884345_1 3'(2'),5'-bisphosphate nucleotidase activity - - - 0.00000000000000002356 83.0
LYD1_k127_892667_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1006.0
LYD1_k127_892667_1 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 352.0
LYD1_k127_892667_2 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001663 226.0
LYD1_k127_892667_3 repeat-containing protein - - - 0.0000000000000000000000002143 115.0
LYD1_k127_89342_0 High confidence in function and specificity - - - 0.00000000000000000000000000000000000000000000000000000008756 207.0
LYD1_k127_89342_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000029 134.0
LYD1_k127_89342_2 Transposase IS200 like - - - 0.0000000000000000000000000001866 116.0
LYD1_k127_89342_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000001472 96.0
LYD1_k127_903003_0 TIR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 413.0
LYD1_k127_903003_1 PFAM integrase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001172 233.0
LYD1_k127_903003_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000002145 162.0
LYD1_k127_903003_3 - - - - 0.00000000000000000000000000000000000114 143.0
LYD1_k127_906331_0 lipolytic protein G-D-S-L family - - - 0.000000000000000000003012 106.0
LYD1_k127_906331_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000001952 98.0
LYD1_k127_912223_0 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 9.157e-197 621.0
LYD1_k127_912223_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 341.0
LYD1_k127_921081_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 410.0
LYD1_k127_921081_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K18478 - 2.7.1.15,2.7.1.184 0.0000000000000000000000000003838 128.0
LYD1_k127_921081_2 DoxX K15977 - - 0.000000000000007212 81.0
LYD1_k127_932083_0 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 556.0
LYD1_k127_932083_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 326.0
LYD1_k127_932083_2 cellulose binding K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000004005 263.0
LYD1_k127_932083_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000005831 109.0
LYD1_k127_932083_4 Homologues of snake disintegrins - - - 0.000000000000002159 91.0
LYD1_k127_940308_0 Glucan endo-1,3-beta-glucosidase K09955 K09955 - - 1.795e-248 795.0
LYD1_k127_940308_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000001318 148.0
LYD1_k127_940308_2 cytochrome c nitrite reductase K15876 - - 0.0000000000000000000001826 98.0
LYD1_k127_940308_3 sensory perception of sound - - - 0.00000000000000000003245 102.0
LYD1_k127_940308_5 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.00000003327 58.0
LYD1_k127_940308_6 domain, Protein - - - 0.000003789 60.0
LYD1_k127_946378_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00437,K00533 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.12.2.1,1.12.7.2 3.243e-208 664.0
LYD1_k127_946378_1 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000179 126.0
LYD1_k127_946378_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000003049 59.0
LYD1_k127_947051_0 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 537.0
LYD1_k127_947051_10 Spermidine putrescine ABC transporter ATPase K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000005829 228.0
LYD1_k127_947051_11 Pyruvate phosphate dikinase - - - 0.00000000000000000000000000000000000000000000001074 179.0
LYD1_k127_947051_12 FOG TPR repeat SEL1 subfamily K07126 GO:0003674,GO:0003824,GO:0008800,GO:0016787,GO:0016810,GO:0016812 - 0.0000000000000000000000000000000000003607 158.0
LYD1_k127_947051_13 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000000000001452 148.0
LYD1_k127_947051_14 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000165 118.0
LYD1_k127_947051_15 - - - - 0.000000000000000000000001954 112.0
LYD1_k127_947051_16 Putative peptidoglycan binding domain - - - 0.00000000000000000002159 97.0
LYD1_k127_947051_17 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000003009 96.0
LYD1_k127_947051_18 protein conserved in bacteria K09974 - - 0.00000000000000004035 94.0
LYD1_k127_947051_19 - - - - 0.00000000000003762 77.0
LYD1_k127_947051_2 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 352.0
LYD1_k127_947051_20 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0000000000002301 79.0
LYD1_k127_947051_21 Glycosyl hydrolases family 25 - - - 0.0000000002097 74.0
LYD1_k127_947051_22 - - - - 0.0000001912 53.0
LYD1_k127_947051_23 Chromate resistance exported protein - - - 0.00007259 53.0
LYD1_k127_947051_3 Vitamin K epoxide reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 353.0
LYD1_k127_947051_4 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 344.0
LYD1_k127_947051_5 Domain of Unknown Function (DUF1259) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 302.0
LYD1_k127_947051_6 Copper amine oxidase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006885 277.0
LYD1_k127_947051_7 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003196 250.0
LYD1_k127_947051_8 Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000001661 256.0
LYD1_k127_947051_9 NMT1/THI5 like - - - 0.000000000000000000000000000000000000000000000000000000000001035 229.0
LYD1_k127_958501_0 PFAM AhpC TSA family K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000005153 181.0
LYD1_k127_958501_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000001106 174.0
LYD1_k127_958501_2 vWA found in TerF C terminus - - - 0.00002022 54.0
LYD1_k127_959100_0 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 291.0
LYD1_k127_959100_1 TfoX N-terminal domain - - - 0.0000000000000000000000000003484 117.0
LYD1_k127_959100_2 Alpha beta hydrolase - - - 0.00000000000000000000000003026 113.0
LYD1_k127_959100_4 Peptidase family M28 - - - 0.0006148 46.0
LYD1_k127_962906_0 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 400.0
LYD1_k127_962906_1 histone H2A K63-linked ubiquitination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 385.0
LYD1_k127_962906_10 - - - - 0.000000000000000000000000004947 114.0
LYD1_k127_962906_12 Dodecin K09165 - - 0.0000000000000000004286 93.0
LYD1_k127_962906_13 - - - - 0.00000000000000002028 88.0
LYD1_k127_962906_14 Lysin motif - - - 0.00000000000000197 80.0
LYD1_k127_962906_15 protein trimerization - - - 0.000000000002757 79.0
LYD1_k127_962906_16 PFAM Transglycosylase-associated protein - - - 0.00000005132 61.0
LYD1_k127_962906_2 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 325.0
LYD1_k127_962906_3 PFAM glycoside hydrolase family 5 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 313.0
LYD1_k127_962906_4 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001953 280.0
LYD1_k127_962906_5 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000001012 268.0
LYD1_k127_962906_6 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000000000304 209.0
LYD1_k127_962906_7 - - - - 0.00000000000000000000000000000000000000000001289 168.0
LYD1_k127_962906_8 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.000000000000000000000000000000000000000002248 164.0
LYD1_k127_968207_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 528.0
LYD1_k127_968207_1 Periplasmic protein TonB links inner and outer membranes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007257 534.0
LYD1_k127_968207_2 Acyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001815 278.0
LYD1_k127_968207_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000001737 162.0
LYD1_k127_968207_4 Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000088 118.0
LYD1_k127_968207_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000001245 70.0
LYD1_k127_981317_0 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 555.0
LYD1_k127_981317_1 Type III secretion protein K03230 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 498.0
LYD1_k127_981317_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 449.0
LYD1_k127_981317_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000006377 127.0
LYD1_k127_981369_0 BadF BadG BcrA BcrD - - - 4.665e-197 638.0
LYD1_k127_981369_1 FHA domain - - - 0.000000000000000000000000000000000000000000000000000001515 214.0
LYD1_k127_981369_2 Uncharacterised conserved protein (DUF2156) K01163 - - 0.00000000000000000000000000000000000000000000000000005626 206.0
LYD1_k127_981369_3 esterase - - - 0.00000000000000000000000000000000000000000000001308 183.0
LYD1_k127_981369_4 PDZ DHR GLGF domain protein - - - 0.000000000000002828 89.0
LYD1_k127_984416_0 A-macroglobulin complement component - - - 0.0 1320.0
LYD1_k127_984416_1 trehalose biosynthetic process K00700,K05343,K16146 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016310,GO:0034637,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046835,GO:0071704,GO:0071944,GO:1901576 2.4.1.18,2.7.1.175,3.2.1.1,5.4.99.16 0.0000000000000000000000000000000000000000009378 161.0