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Overview

ID MAG02038
Name LYD2_bin.1
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Nitrospirota
Class Thermodesulfovibrionia
Order Thermodesulfovibrionales
Family UBA6898
Genus Sulfobium
Species
Assembly information
Completeness (%) 82.87
Contamination (%) 2.15
GC content (%) 51.0
N50 (bp) 8,283
Genome size (bp) 2,186,184

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2172

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1001667_0 ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 305.0
LYD2_k127_1001667_1 GNAT family acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000002207 222.0
LYD2_k127_1001667_2 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000006044 161.0
LYD2_k127_100925_0 PD-(D/E)XK nuclease superfamily - - - 3.112e-239 773.0
LYD2_k127_100925_1 C-terminal domain of tail specific protease (DUF3340) K03797 - 3.4.21.102 2.379e-225 721.0
LYD2_k127_100925_2 transcriptional regulator - GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000006571 117.0
LYD2_k127_1043918_0 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008816 586.0
LYD2_k127_1043918_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 369.0
LYD2_k127_1043918_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000275 254.0
LYD2_k127_1043918_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000005683 233.0
LYD2_k127_1043918_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000002121 80.0
LYD2_k127_1043918_5 Phospholipase D Transphosphatidylase K06131 - - 0.000000002702 59.0
LYD2_k127_1046756_0 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000008662 164.0
LYD2_k127_1046756_1 peptidyl-prolyl isomerase K07533 - 5.2.1.8 0.000000005083 69.0
LYD2_k127_1046756_2 peptidylprolyl isomerase K03770 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0008150,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031233,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0061077,GO:0071575,GO:0071944,GO:0098552 5.2.1.8 0.00001638 57.0
LYD2_k127_1046756_3 Tetratricopeptide repeat - - - 0.0002643 53.0
LYD2_k127_1054312_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 2.696e-236 740.0
LYD2_k127_1054312_1 ACT domain K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004594 519.0
LYD2_k127_1054312_2 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 484.0
LYD2_k127_1054312_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 461.0
LYD2_k127_1054312_4 PFAM response regulator receiver - - - 0.0000007783 59.0
LYD2_k127_1057099_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 3.863e-299 926.0
LYD2_k127_1057099_1 - - - - 0.000000000000000000000000000000000000003985 153.0
LYD2_k127_107736_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1079.0
LYD2_k127_107736_1 Fructose-bisphosphate aldolase class-II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005697 608.0
LYD2_k127_107736_10 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000001428 138.0
LYD2_k127_107736_11 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K13640 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000008491 128.0
LYD2_k127_107736_12 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000002749 96.0
LYD2_k127_107736_13 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000001207 79.0
LYD2_k127_107736_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 364.0
LYD2_k127_107736_3 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 346.0
LYD2_k127_107736_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000001263 228.0
LYD2_k127_107736_5 - - - - 0.0000000000000000000000000000000000000000000000000000404 197.0
LYD2_k127_107736_6 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000001548 183.0
LYD2_k127_107736_7 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000005898 179.0
LYD2_k127_107736_8 PFAM Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000001231 177.0
LYD2_k127_107736_9 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000000000000000000001671 149.0
LYD2_k127_1077658_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 6.983e-213 670.0
LYD2_k127_1077658_1 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 504.0
LYD2_k127_1077658_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005418 498.0
LYD2_k127_1077658_3 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 389.0
LYD2_k127_1077658_4 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000009754 237.0
LYD2_k127_1099407_0 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009946 480.0
LYD2_k127_1099407_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006204 431.0
LYD2_k127_1099407_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 389.0
LYD2_k127_1099407_3 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 378.0
LYD2_k127_1099407_4 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001214 274.0
LYD2_k127_1099407_5 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.0000000000000001336 79.0
LYD2_k127_1099407_6 Required for transformation and DNA binding K02245,K02456 GO:0005575,GO:0005623,GO:0005886,GO:0009986,GO:0016020,GO:0044464,GO:0071944 - 0.00003306 53.0
LYD2_k127_110807_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 559.0
LYD2_k127_110807_1 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008592 244.0
LYD2_k127_110807_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000007342 234.0
LYD2_k127_110807_3 PFAM MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000525 217.0
LYD2_k127_110807_4 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000175 207.0
LYD2_k127_110807_5 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.000000000000000000000000000000000000001318 151.0
LYD2_k127_110807_6 - - - - 0.0000000000000000000000000000000004247 134.0
LYD2_k127_110807_8 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000002053 58.0
LYD2_k127_1114144_0 histidine-tRNA ligase activity K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 405.0
LYD2_k127_1114144_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000251 261.0
LYD2_k127_1114144_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003223 252.0
LYD2_k127_1114144_3 DivIVA protein K04074 - - 0.00000000000000000000000000000000000000000000000000000000003612 208.0
LYD2_k127_1114144_4 LysE type translocator - - - 0.000000000000000000000000000000000000000000000000000000002205 208.0
LYD2_k127_1114144_5 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000001409 180.0
LYD2_k127_1114144_6 YGGT family K02221 - - 0.00000000000000000000000000000004231 128.0
LYD2_k127_1117670_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008966,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019538,GO:0034641,GO:0034654,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0046777,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 529.0
LYD2_k127_1117670_1 all-trans-retinol 13,14-reductase activity K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 485.0
LYD2_k127_1117670_10 Protein of unknown function (DUF520) K09767 - - 0.0000000000000000000000000000000000000000000000000000001572 200.0
LYD2_k127_1117670_11 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000006093 202.0
LYD2_k127_1117670_12 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000745 168.0
LYD2_k127_1117670_13 CO dehydrogenase acetyl-CoA synthase gamma subunit (Corrinoid Fe-S protein) - - - 0.000000000000000000000000000000000000000008586 163.0
LYD2_k127_1117670_14 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000004823 155.0
LYD2_k127_1117670_15 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000008341 126.0
LYD2_k127_1117670_16 - - - - 0.000000000000000000000000003437 111.0
LYD2_k127_1117670_17 cheY-homologous receiver domain - - - 0.000000000000000000002044 98.0
LYD2_k127_1117670_18 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000003882 102.0
LYD2_k127_1117670_19 YbbR-like protein - - - 0.00002212 55.0
LYD2_k127_1117670_2 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 405.0
LYD2_k127_1117670_20 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00003734 55.0
LYD2_k127_1117670_3 Biotin-lipoyl like K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 388.0
LYD2_k127_1117670_4 Cation efflux family K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 355.0
LYD2_k127_1117670_5 NMT1/THI5 like K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 350.0
LYD2_k127_1117670_6 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 323.0
LYD2_k127_1117670_7 PFAM ATP-binding region, ATPase-like histidine kinase A-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007926 318.0
LYD2_k127_1117670_8 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002321 250.0
LYD2_k127_1117670_9 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789,K18138 - - 0.00000000000000000000000000000000000000000000000000000007429 197.0
LYD2_k127_1121432_0 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007827 394.0
LYD2_k127_1121432_1 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 340.0
LYD2_k127_1121432_10 General secretion pathway protein K02457 - - 0.000000008829 64.0
LYD2_k127_1121432_11 fimbrial assembly K02461 - - 0.00000002016 67.0
LYD2_k127_1121432_12 Prokaryotic N-terminal methylation motif K02458 - - 0.000004126 54.0
LYD2_k127_1121432_13 Type II secretion system (T2SS), protein M subtype b - - - 0.000004602 56.0
LYD2_k127_1121432_14 Prokaryotic N-terminal methylation motif K02456,K02457,K02458,K02459,K02655,K10926 - - 0.0001581 52.0
LYD2_k127_1121432_15 - - - - 0.0009762 49.0
LYD2_k127_1121432_2 ATPases associated with a variety of cellular activities K09689,K09691 - 3.6.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005824 331.0
LYD2_k127_1121432_3 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02652 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000000000000000000001318 231.0
LYD2_k127_1121432_4 Peptidylprolyl isomerase K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000017 202.0
LYD2_k127_1121432_5 Type II secretion system (T2SS), protein K K02460 - - 0.00000000000000000000000000000000000000000004064 175.0
LYD2_k127_1121432_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000001389 153.0
LYD2_k127_1121432_7 ABC-2 type transporter K09690 - - 0.00000000000000000000000000001346 126.0
LYD2_k127_1121432_8 Glycosyl transferase, family 2 K12992 - - 0.00000000000000000004794 94.0
LYD2_k127_1121432_9 Fimbrial assembly protein (PilN) - - - 0.0000000009365 71.0
LYD2_k127_1161812_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1159.0
LYD2_k127_1195902_0 ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 518.0
LYD2_k127_1195902_1 Protein of unknown function (DUF1460) - - - 0.0002339 51.0
LYD2_k127_1218427_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 7.273e-319 990.0
LYD2_k127_1218427_1 Nicotinic acid phosphoribosyltransferase K00763 - 6.3.4.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007683 557.0
LYD2_k127_1218427_2 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 465.0
LYD2_k127_1218427_3 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 379.0
LYD2_k127_1218427_4 cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 378.0
LYD2_k127_1218427_5 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000006415 229.0
LYD2_k127_1218427_6 - - - - 0.00000000000000000000000000000000000000000005426 184.0
LYD2_k127_1218427_7 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000001231 116.0
LYD2_k127_1236438_0 (Rhomboid) family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000000003583 238.0
LYD2_k127_1236438_1 PHP-associated K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000002218 226.0
LYD2_k127_1236438_2 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000008521 180.0
LYD2_k127_1236438_3 zinc-ribbon domain - - - 0.000000000000000000000000000000000000000000005968 181.0
LYD2_k127_1236438_4 PFAM ATP-binding region, ATPase domain protein - - - 0.0000000000000000000000000000000000000004356 158.0
LYD2_k127_1236438_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000005274 133.0
LYD2_k127_1236438_6 DRTGG domain - - - 0.000000000000000000000000000004415 124.0
LYD2_k127_1236438_7 DRTGG domain protein - - - 0.00000000000000000000000001631 112.0
LYD2_k127_1236438_8 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299 - 1.17.1.10,1.17.1.9 0.0000000000000000000008082 98.0
LYD2_k127_1236438_9 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000001769 77.0
LYD2_k127_1268335_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 4.445e-273 852.0
LYD2_k127_1268335_1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 573.0
LYD2_k127_1268335_2 DRTGG domain protein - - - 0.0000000000000005609 80.0
LYD2_k127_1268335_3 Ferredoxin K17992 - 1.12.1.3 0.000000000000000739 78.0
LYD2_k127_1289992_0 Domain of unknown function (DUF4139) - - - 5.413e-198 630.0
LYD2_k127_1289992_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 566.0
LYD2_k127_1289992_2 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 485.0
LYD2_k127_1289992_3 Protein of unknown function (DUF1810) - - - 0.00000000000000000000000000000000000000000000000000002948 191.0
LYD2_k127_1289992_4 PFAM Smr protein MutS2 - - - 0.000000000000000000000000001257 121.0
LYD2_k127_1289992_5 response to copper ion - - - 0.000000000000000000005216 104.0
LYD2_k127_1289992_6 OsmC-like protein K07397 - - 0.0000000000000000009838 87.0
LYD2_k127_1289992_7 COG0655 Multimeric flavodoxin WrbA - - - 0.0000000000005246 72.0
LYD2_k127_12955_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 351.0
LYD2_k127_12955_1 ABC-2 type transporter K09694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 339.0
LYD2_k127_12955_2 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004366 261.0
LYD2_k127_12955_3 Protein phosphatase 2C domain K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000002792 252.0
LYD2_k127_12955_4 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000000000000001017 117.0
LYD2_k127_12955_5 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000003588 85.0
LYD2_k127_12955_6 antisigma factor binding K04749,K05946,K06378 - 2.4.1.187 0.00000000000000009318 83.0
LYD2_k127_1334010_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 1.44e-229 727.0
LYD2_k127_1334010_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 1.7e-227 719.0
LYD2_k127_1334010_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 429.0
LYD2_k127_1334010_3 Transcriptional regulator - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 378.0
LYD2_k127_1334010_4 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003005 247.0
LYD2_k127_1334010_5 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000886 227.0
LYD2_k127_1334010_6 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000003118 160.0
LYD2_k127_1334010_7 Glu-tRNAGln amidotransferase C subunit K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000001645 111.0
LYD2_k127_1334010_8 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000007023 86.0
LYD2_k127_1334010_9 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000003734 62.0
LYD2_k127_1352090_0 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 2.21e-227 709.0
LYD2_k127_1352090_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 605.0
LYD2_k127_1352090_10 Cytochrome P460 - - - 0.00000000000000000000000000000000000004387 149.0
LYD2_k127_1352090_11 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000001539 124.0
LYD2_k127_1352090_12 Alpha-acetolactate decarboxylase K01575 - 4.1.1.5 0.000000000000000000000002558 111.0
LYD2_k127_1352090_13 PKD domain K01179,K08651 - 3.2.1.4,3.4.21.66 0.000000000000000000004851 109.0
LYD2_k127_1352090_14 - - - - 0.00000000000000000008913 100.0
LYD2_k127_1352090_16 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000004032 87.0
LYD2_k127_1352090_17 mercury ion transmembrane transporter activity K07213 - - 0.0000000000000006051 79.0
LYD2_k127_1352090_18 Translation initiation factor IF-3, C-terminal domain K02520 - - 0.000000000000007712 75.0
LYD2_k127_1352090_2 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 499.0
LYD2_k127_1352090_20 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000001333 61.0
LYD2_k127_1352090_22 PilZ domain - - - 0.00003278 52.0
LYD2_k127_1352090_3 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 475.0
LYD2_k127_1352090_4 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 455.0
LYD2_k127_1352090_5 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003842 334.0
LYD2_k127_1352090_6 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005805 289.0
LYD2_k127_1352090_7 histidine kinase, HAMP K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000003871 220.0
LYD2_k127_1352090_8 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000001325 196.0
LYD2_k127_1352090_9 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000006678 151.0
LYD2_k127_1378124_0 Alpha-glucan water dikinase K08244 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009631,GO:0009941,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0031967,GO:0031975,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050521,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:1901575 2.7.9.4 1.497e-233 758.0
LYD2_k127_1378124_1 Phosphoglucan, water dikinase K15535 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019200,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046777,GO:0046835,GO:0051752,GO:0071704,GO:1901564,GO:1901575 2.7.9.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 591.0
LYD2_k127_1378124_2 Alpha amylase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 542.0
LYD2_k127_1378124_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001547 281.0
LYD2_k127_1378124_4 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001311 241.0
LYD2_k127_1378124_5 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.000000000000000000000000000000000000000000000000000000000000000005677 231.0
LYD2_k127_1378124_6 superoxide reductase activity K05919 - 1.15.1.2 0.00000000000000000000000000000000000000000000000000000000000003348 218.0
LYD2_k127_1378124_7 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000008149 192.0
LYD2_k127_1378124_8 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000000274 121.0
LYD2_k127_1404544_0 ABC transporter K06020 - 3.6.3.25 2.113e-311 959.0
LYD2_k127_1404544_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 548.0
LYD2_k127_1404544_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003165 333.0
LYD2_k127_1404544_3 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 329.0
LYD2_k127_1404544_4 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000124 221.0
LYD2_k127_1404544_5 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000939 196.0
LYD2_k127_1404544_6 6-carboxyhexanoate--CoA ligase K01906 - 6.2.1.14 0.0000000000000000000000000000000000000000000000006794 184.0
LYD2_k127_1404544_7 GGDEF domain - - - 0.000000111 59.0
LYD2_k127_1445044_0 metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 358.0
LYD2_k127_1445044_1 Ion channel K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001127 284.0
LYD2_k127_1445044_2 Vitamin K epoxide reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000333 248.0
LYD2_k127_1445044_3 Protein of unknown function (DUF4019) - - - 0.0000000000000000000000000000000000002372 149.0
LYD2_k127_1454299_0 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000166,GO:0000287,GO:0000820,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006541,GO:0006542,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008882,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0010565,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019222,GO:0019752,GO:0030554,GO:0031323,GO:0032553,GO:0032555,GO:0032559,GO:0033238,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000605 535.0
LYD2_k127_1454299_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001161 258.0
LYD2_k127_1483191_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.257e-286 894.0
LYD2_k127_1483191_1 Dehydratase family K01687 - 4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006427 513.0
LYD2_k127_1483191_2 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 381.0
LYD2_k127_1483191_3 Ribosomal_S15 K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000005729 126.0
LYD2_k127_1493617_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008711 407.0
LYD2_k127_1493617_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001075 252.0
LYD2_k127_1493617_2 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.000000000000001124 87.0
LYD2_k127_1501979_0 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 466.0
LYD2_k127_1501979_1 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000000000000000000000000000000000000000000000000001792 195.0
LYD2_k127_1501979_2 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.000000000000000000000000000000000000008016 148.0
LYD2_k127_1517607_0 FtsX-like permease family K02004 - - 8.4e-323 1004.0
LYD2_k127_1517607_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000388 398.0
LYD2_k127_1517607_2 TIGRFAM efflux transporter, RND family, MFP subunit K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 383.0
LYD2_k127_1517607_3 PFAM ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 359.0
LYD2_k127_1522138_0 Putative RNA methylase family UPF0020 K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 460.0
LYD2_k127_1522138_1 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 302.0
LYD2_k127_1522138_2 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002915 286.0
LYD2_k127_1522138_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001649 247.0
LYD2_k127_1522138_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000317 253.0
LYD2_k127_1522138_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001851 234.0
LYD2_k127_1522138_6 Oligopeptidase F K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000007797 246.0
LYD2_k127_1550343_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 5.426e-225 715.0
LYD2_k127_1550343_1 Uroporphyrinogen decarboxylase (URO-D) K14080 - 2.1.1.246 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 418.0
LYD2_k127_1550343_10 TIGRFAM iron-sulfur cluster binding protein - - - 0.00000000000000000000000000000000000000000000009684 175.0
LYD2_k127_1550343_11 PFAM Carboxymuconolactone decarboxylase - - - 0.0000000000000000000000000000000000000006709 154.0
LYD2_k127_1550343_12 PFAM Nitrate reductase gamma subunit - - - 0.000000000000000000000002145 111.0
LYD2_k127_1550343_13 PFAM PBS lyase HEAT-like repeat - - - 0.0000000000000000005871 93.0
LYD2_k127_1550343_14 OsmC-like protein - - - 0.00000000000000001313 89.0
LYD2_k127_1550343_15 - - - - 0.000000000000008867 78.0
LYD2_k127_1550343_16 PFAM Nitrate reductase gamma subunit - - - 0.000000005146 66.0
LYD2_k127_1550343_17 Protein of unknown function (DUF2934) - - - 0.000001967 53.0
LYD2_k127_1550343_2 Tetrahydromethanopterin S-methyltransferase MtrH subunit K00584 - 2.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 374.0
LYD2_k127_1550343_3 Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate K15527 - 2.5.1.76 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 338.0
LYD2_k127_1550343_4 Methionine synthase, cobalamin (vitamin B12)-binding module, cap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 319.0
LYD2_k127_1550343_5 PFAM Cysteine-rich domain K08264 - 1.8.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 326.0
LYD2_k127_1550343_6 Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). HdrD may act as the catalytic subunit K08264 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009058,GO:0009061,GO:0009987,GO:0015947,GO:0015948,GO:0015975,GO:0015980,GO:0016491,GO:0016667,GO:0043446,GO:0043447,GO:0044237,GO:0044249,GO:0045333,GO:0051912,GO:0055114,GO:0071704,GO:1901576 1.8.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000425 325.0
LYD2_k127_1550343_7 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599,K14080 - 2.1.1.246,4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 314.0
LYD2_k127_1550343_8 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K13039 - 4.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 311.0
LYD2_k127_1550343_9 Part of the ABC transporter complex PstSACB involved in phosphate import - - - 0.0000000000000000000000000000000000000000000000000000000000000001135 233.0
LYD2_k127_1558334_0 chlorophyll binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004425 247.0
LYD2_k127_1558334_1 - - - - 0.0000000000000000000000003444 115.0
LYD2_k127_158992_0 Pyruvate phosphate dikinase, PEP K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007514 530.0
LYD2_k127_158992_1 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005916 377.0
LYD2_k127_158992_2 S1 domain K00243 - - 0.000000000000000000000000000000000000000000000000000009831 194.0
LYD2_k127_158992_3 DNA-binding protein VF530 - - - 0.000000000000000000000000000009006 119.0
LYD2_k127_158992_4 RNase H - - - 0.000000000000000000000000005754 121.0
LYD2_k127_158992_5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.0000000000000000004198 89.0
LYD2_k127_158992_6 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.000000000000002484 78.0
LYD2_k127_158992_7 endonuclease containing a URI domain K07461 - - 0.00000000003083 74.0
LYD2_k127_158992_8 PilZ domain - - - 0.00008728 52.0
LYD2_k127_158992_9 PFAM Transposase IS200 like - - - 0.0002926 46.0
LYD2_k127_1593579_0 Na dependent nucleoside transporter K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 493.0
LYD2_k127_1593579_1 phosphosulfolactate synthase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 422.0
LYD2_k127_1593579_2 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000004044 115.0
LYD2_k127_1613844_0 Glycosyl hydrolase family 57 - - - 6.377e-239 760.0
LYD2_k127_1613844_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000754 592.0
LYD2_k127_1613844_2 cell cycle K05589,K12065,K13052 - - 0.00000000000002536 76.0
LYD2_k127_1628805_0 cyclic 2,3-diphosphoglycerate synthetase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 582.0
LYD2_k127_1628805_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003928 549.0
LYD2_k127_1628805_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 449.0
LYD2_k127_1628805_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 342.0
LYD2_k127_1628805_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000005792 230.0
LYD2_k127_1628805_5 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000001423 188.0
LYD2_k127_1628805_6 (2R)-phospho-3-sulfolactate synthase (ComA) - - - 0.00000000000007646 72.0
LYD2_k127_1628805_7 Aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 0.000000009491 58.0
LYD2_k127_1634154_0 TIGRFAM hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 400.0
LYD2_k127_1634154_1 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002673 269.0
LYD2_k127_1634154_2 MlaC protein K07323 - - 0.0000000000000000000000000000000002093 140.0
LYD2_k127_1634154_3 - - - - 0.0000000000000000000000000006112 116.0
LYD2_k127_1634154_4 PFAM RNA recognition motif - - - 0.00000000000000000000002404 104.0
LYD2_k127_1634154_5 Ribosomal protein S21 K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000006062 78.0
LYD2_k127_1634154_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00007437 47.0
LYD2_k127_1660854_0 Heat shock 70 kDa protein K04043 - - 0.0 1018.0
LYD2_k127_1660854_1 diaminopimelate decarboxylase activity K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 492.0
LYD2_k127_1660854_10 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004042 276.0
LYD2_k127_1660854_11 SEC-C motif K09858 - - 0.00000000000000000000000000000000000000000000000000000000000009827 217.0
LYD2_k127_1660854_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000004926 218.0
LYD2_k127_1660854_13 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000006152 183.0
LYD2_k127_1660854_14 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000005126 150.0
LYD2_k127_1660854_15 His Kinase A (phosphoacceptor - - - 0.000000000003938 78.0
LYD2_k127_1660854_16 integral membrane protein - - - 0.000001877 58.0
LYD2_k127_1660854_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 480.0
LYD2_k127_1660854_3 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 448.0
LYD2_k127_1660854_4 spermidine synthase activity K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 415.0
LYD2_k127_1660854_5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005976 415.0
LYD2_k127_1660854_6 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 376.0
LYD2_k127_1660854_7 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 356.0
LYD2_k127_1660854_8 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 308.0
LYD2_k127_1660854_9 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 292.0
LYD2_k127_1686383_0 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 351.0
LYD2_k127_1686383_1 Domain of unknown function (DUF4337) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002939 247.0
LYD2_k127_1686383_2 Transmembrane exosortase (Exosortase_EpsH) - - - 0.000000000000006906 82.0
LYD2_k127_1692883_0 PBP superfamily domain K03750,K07219 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 535.0
LYD2_k127_1692883_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 378.0
LYD2_k127_1692883_2 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 371.0
LYD2_k127_1692883_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 320.0
LYD2_k127_170284_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004283 511.0
LYD2_k127_170284_1 Response regulator receiver modulated diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006571 489.0
LYD2_k127_170284_10 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.0000000000000000000000000000007414 128.0
LYD2_k127_170284_11 PASTA K12132 - 2.7.11.1 0.00000000009095 71.0
LYD2_k127_170284_12 Lipopolysaccharide-assembly, LptC-related - - - 0.0001684 50.0
LYD2_k127_170284_2 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007537 448.0
LYD2_k127_170284_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004992 286.0
LYD2_k127_170284_4 ATPases associated with a variety of cellular activities K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001836 286.0
LYD2_k127_170284_5 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000195 273.0
LYD2_k127_170284_6 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002035 271.0
LYD2_k127_170284_7 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000002125 204.0
LYD2_k127_170284_8 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.000000000000000000000000000000000000000000000000001567 188.0
LYD2_k127_170284_9 OstA-like protein K09774 - - 0.0000000000000000000000000000000000002615 145.0
LYD2_k127_1711579_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 4.388e-218 682.0
LYD2_k127_1711579_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009724 477.0
LYD2_k127_1711579_10 Cytochrome c K16966,K17049,K17052 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000005264 220.0
LYD2_k127_1711579_11 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000003494 185.0
LYD2_k127_1711579_12 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000001753 66.0
LYD2_k127_1711579_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005789 471.0
LYD2_k127_1711579_3 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 469.0
LYD2_k127_1711579_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 410.0
LYD2_k127_1711579_5 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 334.0
LYD2_k127_1711579_6 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005217 262.0
LYD2_k127_1711579_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000002011 234.0
LYD2_k127_1711579_8 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000004054 215.0
LYD2_k127_1711579_9 PFAM amino acid-binding ACT domain protein - - - 0.000000000000000000000000000000000000000000000000000000000008471 209.0
LYD2_k127_1722814_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001317 281.0
LYD2_k127_1722814_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K14986 - 2.7.13.3 0.0000000000000000000000000000006475 132.0
LYD2_k127_174752_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 1.031e-209 660.0
LYD2_k127_174752_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 6.079e-198 625.0
LYD2_k127_174752_10 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000000000000000002181 219.0
LYD2_k127_174752_11 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000002546 213.0
LYD2_k127_174752_12 protein phosphatase 2C domain protein K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000002453 211.0
LYD2_k127_174752_13 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000001588 190.0
LYD2_k127_174752_14 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000000000000000001292 177.0
LYD2_k127_174752_15 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000001373 171.0
LYD2_k127_174752_16 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000001469 174.0
LYD2_k127_174752_17 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000003767 173.0
LYD2_k127_174752_18 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000000000000000000003144 153.0
LYD2_k127_174752_19 FHA Domain - - - 0.000000000000000000000000000001463 129.0
LYD2_k127_174752_2 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 1.512e-195 615.0
LYD2_k127_174752_20 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000002555 124.0
LYD2_k127_174752_21 Belongs to the UPF0296 family K09777 - - 0.00000000000000000000000002723 111.0
LYD2_k127_174752_22 Ribbon-helix-helix protein, copG family - - - 0.00000000000000000000839 93.0
LYD2_k127_174752_23 Roadblock/LC7 domain - - - 0.0000000000000000002808 92.0
LYD2_k127_174752_24 belongs to the thioredoxin family K14949,K20543 - 2.7.11.1 0.0000000000000000007038 98.0
LYD2_k127_174752_25 Cytochrome c - - - 0.00000000000000004175 84.0
LYD2_k127_174752_26 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000006933 63.0
LYD2_k127_174752_3 C oxidoreductase subunit A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 422.0
LYD2_k127_174752_4 Receptor family ligand binding region K01999 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0008150,GO:0015711,GO:0015803,GO:0015804,GO:0015818,GO:0015820,GO:0015829,GO:0015849,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0070728,GO:0071702,GO:0071705 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006029 398.0
LYD2_k127_174752_5 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 371.0
LYD2_k127_174752_6 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 312.0
LYD2_k127_174752_7 Metallopeptidase family M24 K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000122 277.0
LYD2_k127_174752_8 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000003366 247.0
LYD2_k127_174752_9 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000001918 239.0
LYD2_k127_1804580_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0 1118.0
LYD2_k127_1804580_1 Haem-binding uptake, Tiki superfamily, ChaN - - - 2.174e-206 677.0
LYD2_k127_1804580_10 Binds directly to 16S ribosomal RNA K02968 - - 0.0000001998 56.0
LYD2_k127_1804580_11 DsrE/DsrF/DrsH-like family - - - 0.00004754 45.0
LYD2_k127_1804580_2 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006999 585.0
LYD2_k127_1804580_3 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 376.0
LYD2_k127_1804580_4 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000004996 219.0
LYD2_k127_1804580_5 Adenylate kinase - - - 0.00000000000000000000000000000000000000000000000006826 185.0
LYD2_k127_1804580_6 GAF domain - - - 0.000000000000000000000000000000000000000000004323 179.0
LYD2_k127_1804580_8 4Fe-4S single cluster domain of Ferredoxin I K05337 - - 0.00000000000005675 74.0
LYD2_k127_1804580_9 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000009521 79.0
LYD2_k127_1812848_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 2.641e-266 831.0
LYD2_k127_1812848_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 373.0
LYD2_k127_1812848_2 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.000000000000000000000000000000000000000000000000000335 194.0
LYD2_k127_1812848_3 - - - - 0.00000000000000000000000000000000000004842 152.0
LYD2_k127_1812848_4 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000004809 141.0
LYD2_k127_1812848_5 - - - - 0.00000005396 57.0
LYD2_k127_1836069_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 2.719e-268 837.0
LYD2_k127_1836069_1 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 414.0
LYD2_k127_1836069_2 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 329.0
LYD2_k127_1836069_3 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 317.0
LYD2_k127_1836069_4 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000002441 218.0
LYD2_k127_1836069_5 retrograde transport, endosome to Golgi K07095 - - 0.000000000000000000000000000000000000000000000000000009968 193.0
LYD2_k127_184509_0 Spermine/spermidine synthase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 433.0
LYD2_k127_184509_1 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000001722 126.0
LYD2_k127_184509_2 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000001114 89.0
LYD2_k127_1895038_0 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 507.0
LYD2_k127_1895038_1 HMGL-like K01666 - 4.1.3.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 397.0
LYD2_k127_1895038_2 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 318.0
LYD2_k127_1895038_3 - - - - 0.000000000000000000000000000000000000000000000000000000007627 203.0
LYD2_k127_1895038_4 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000002743 160.0
LYD2_k127_1895038_5 Domain of unknown function DUF302 - - - 0.0000000000000000000000000001624 127.0
LYD2_k127_1895038_6 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000004293 99.0
LYD2_k127_193124_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 4.364e-232 725.0
LYD2_k127_193124_1 7TM receptor with intracellular HD hydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008629 498.0
LYD2_k127_193124_2 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 391.0
LYD2_k127_193124_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003576 279.0
LYD2_k127_193124_4 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000000000000000000000000000000000000000000001635 202.0
LYD2_k127_193124_5 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000825 101.0
LYD2_k127_193124_6 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000007161 62.0
LYD2_k127_1932937_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 555.0
LYD2_k127_1932937_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 484.0
LYD2_k127_1932937_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 426.0
LYD2_k127_1932937_3 pfam abc K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002323 352.0
LYD2_k127_1932937_4 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 361.0
LYD2_k127_1932937_5 Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) K03620,K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009813 288.0
LYD2_k127_1932937_6 ABC transporter related K01996 - - 0.000000000000000000000000000000003075 132.0
LYD2_k127_1934532_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1400.0
LYD2_k127_1934532_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 437.0
LYD2_k127_1934532_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 376.0
LYD2_k127_1934532_3 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000005985 74.0
LYD2_k127_1955773_0 DEAD DEAH box helicase K06877 - - 5.788e-214 690.0
LYD2_k127_1955773_1 PFAM Glycosyl transferase family 2 K12992 - - 0.000000000000000000000000000000000000000000000000000000000000000001429 232.0
LYD2_k127_1955773_2 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.000000000000000000000000000000000000000000000002536 179.0
LYD2_k127_1955773_3 protein-disulfide reductase activity - - - 0.000000000000000000000000001576 117.0
LYD2_k127_1955773_4 - - - - 0.000000005053 57.0
LYD2_k127_1955773_5 FHA domain - - - 0.00000001487 59.0
LYD2_k127_1957822_0 Sigma54 specific transcriptional regulator, Fis family - - - 5.228e-211 670.0
LYD2_k127_1957822_1 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K01841,K03417 - 4.1.3.30,5.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 356.0
LYD2_k127_1957822_2 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000648 338.0
LYD2_k127_1957822_3 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000000000000000000000000000000007211 184.0
LYD2_k127_1957822_4 competence protein - - - 0.0000000713 64.0
LYD2_k127_1957822_6 type IV pilus secretin PilQ K02666 - - 0.0009536 48.0
LYD2_k127_1974837_0 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 330.0
LYD2_k127_1974837_1 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006864 258.0
LYD2_k127_1974837_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000000004146 117.0
LYD2_k127_1974837_4 UPF0182 protein K09118 - - 0.00000000000000000000000142 113.0
LYD2_k127_1974837_5 PFAM Lytic transglycosylase catalytic - - - 0.0000000001614 70.0
LYD2_k127_1974837_6 Protein of unknown function (DUF2934) - - - 0.0000002071 58.0
LYD2_k127_197958_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 4.093e-213 672.0
LYD2_k127_197958_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 510.0
LYD2_k127_197958_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 340.0
LYD2_k127_197958_3 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000373 284.0
LYD2_k127_197958_4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000001366 182.0
LYD2_k127_197958_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000005734 179.0
LYD2_k127_197958_6 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.000000000000000000000000000000000000000000001526 171.0
LYD2_k127_197958_7 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000003605 160.0
LYD2_k127_197958_8 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000000000001303 160.0
LYD2_k127_197958_9 peptidyl-tyrosine sulfation - - - 0.0000000008285 72.0
LYD2_k127_1988514_0 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 555.0
LYD2_k127_1988514_1 AMP binding - - - 0.00000000000000000000000000000000000000000001458 165.0
LYD2_k127_1988514_2 Mo-molybdopterin cofactor metabolic process K02379 - - 0.000000000000000000000000000000000000000005131 158.0
LYD2_k127_1988514_3 acr, cog1993 K09137 - - 0.00000000000000000004446 97.0
LYD2_k127_1988514_4 Protein of unknown function (DUF1573) - - - 0.0000000000001314 79.0
LYD2_k127_2020943_0 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 3.976e-243 764.0
LYD2_k127_2020943_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 9.725e-198 629.0
LYD2_k127_2020943_2 molybdopterin oxidoreductase Fe4S4 region K05299 - 1.17.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 481.0
LYD2_k127_2020943_3 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000003117 168.0
LYD2_k127_2020943_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000008979 121.0
LYD2_k127_2020943_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000009194 83.0
LYD2_k127_2020943_6 - - - - 0.0003688 44.0
LYD2_k127_2023799_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 386.0
LYD2_k127_2023799_1 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008031 359.0
LYD2_k127_2023799_2 PFAM regulatory protein, ArsR - - - 0.0000000000000000001398 94.0
LYD2_k127_2023799_3 - - - - 0.0000000000000000004803 89.0
LYD2_k127_2023799_4 Universal stress protein family - - - 0.00000001363 59.0
LYD2_k127_2045592_0 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 427.0
LYD2_k127_2045592_1 Putative transmembrane protein (Alph_Pro_TM) - - - 0.00000000000000000000000000000000000000000000000356 182.0
LYD2_k127_2045592_2 Sigma-54 factor interaction domain-containing protein K07713 - - 0.000000000000000000000000000000000005949 143.0
LYD2_k127_2045592_3 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000000000000000000001132 132.0
LYD2_k127_2045592_4 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000001331 68.0
LYD2_k127_2050083_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2110.0
LYD2_k127_2050083_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 527.0
LYD2_k127_2050083_2 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000003657 128.0
LYD2_k127_2075531_0 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 419.0
LYD2_k127_2075531_1 Predicted membrane protein (DUF2127) - - - 0.000000000000000000000000000000000000000000000000002785 186.0
LYD2_k127_2075531_2 protein with SCP PR1 domains - - - 0.000000000000000000000000000000000000001457 157.0
LYD2_k127_2075531_3 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000001691 145.0
LYD2_k127_2075531_5 Phospholipase D. Active site motifs. - - - 0.000000005736 60.0
LYD2_k127_2075531_6 acetyltransferase K00661 - 2.3.1.79 0.0000002059 61.0
LYD2_k127_2113872_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 533.0
LYD2_k127_2113872_1 Nitrite and sulphite reductase 4Fe-4S K11181 - 1.8.99.5 0.0000000000000000605 80.0
LYD2_k127_2156456_0 Domain of unknown function (DUF3458_C) ARM repeats K01256,K08776 - 3.4.11.2 0.0 1285.0
LYD2_k127_2156456_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 1.736e-268 841.0
LYD2_k127_2156456_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 379.0
LYD2_k127_2156456_3 Iron-storage protein K02217 - 1.16.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002674 271.0
LYD2_k127_2156456_4 Response regulator, receiver - - - 0.000000001218 61.0
LYD2_k127_2156456_5 - - - - 0.000000004566 59.0
LYD2_k127_2158001_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 3.92e-285 890.0
LYD2_k127_2158001_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 7.974e-223 700.0
LYD2_k127_2158001_10 DNA-damage-inducible protein d K14623 - - 0.000000000000000000000000002349 113.0
LYD2_k127_2158001_11 Protein of unknown function, DUF488 - - - 0.0000000000000000000000004976 106.0
LYD2_k127_2158001_13 PIN domain - - - 0.00000000009615 68.0
LYD2_k127_2158001_2 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 511.0
LYD2_k127_2158001_3 PFAM cobalamin (vitamin B12) biosynthesis CbiM K02007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 401.0
LYD2_k127_2158001_4 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 325.0
LYD2_k127_2158001_5 Cobalt transport protein K02008 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005041 277.0
LYD2_k127_2158001_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002302 252.0
LYD2_k127_2158001_7 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000003043 181.0
LYD2_k127_2158001_8 MgtC family K07507 - - 0.00000000000000000000000000000000000151 146.0
LYD2_k127_2158001_9 CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000000000005563 131.0
LYD2_k127_2190611_0 PFAM Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000000000000000000000000000000000000000006442 185.0
LYD2_k127_2190611_1 addiction module antidote protein, HigA family K21498 - - 0.00000000000000000000000000000000000000001563 155.0
LYD2_k127_2190611_2 Nucleotide binding protein, PINc - - - 0.0000000000000000000000001735 113.0
LYD2_k127_2190611_3 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.0000000000004346 71.0
LYD2_k127_2190611_4 periplasmic or secreted lipoprotein - - - 0.00000002358 58.0
LYD2_k127_2190611_5 - - - - 0.00000005622 57.0
LYD2_k127_222086_0 Telomere recombination K04656 - - 5.933e-246 784.0
LYD2_k127_222086_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 494.0
LYD2_k127_222086_10 Putative zinc- or iron-chelating domain K06940 - - 0.00006468 51.0
LYD2_k127_222086_2 Hydrogenase formation hypA family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 448.0
LYD2_k127_222086_3 AIR synthase related protein, N-terminal domain K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 398.0
LYD2_k127_222086_4 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 321.0
LYD2_k127_222086_5 TIGRFAM peptidase T-like protein K01258 - 3.4.11.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001188 287.0
LYD2_k127_222086_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000004668 191.0
LYD2_k127_222086_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000006053 113.0
LYD2_k127_222086_8 PAS domain containing protein K03406,K13924,K14986 - 2.1.1.80,2.7.13.3,3.1.1.61 0.000000000000000000008115 94.0
LYD2_k127_222086_9 - - - - 0.00000000000000002028 88.0
LYD2_k127_2243972_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 486.0
LYD2_k127_2243972_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008184 353.0
LYD2_k127_2243972_2 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 301.0
LYD2_k127_2243972_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000006874 251.0
LYD2_k127_2243972_4 Domain of unknown function (DUF4115) - - - 0.00000000000000002898 90.0
LYD2_k127_2274136_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1057.0
LYD2_k127_2274136_1 COG0058 Glucan phosphorylase - - - 2.008e-258 807.0
LYD2_k127_2274136_10 SMART Cold shock protein K03704 - - 0.000000000000000000000001952 103.0
LYD2_k127_2274136_11 exodeoxyribonuclease I activity - - - 0.0000000000001043 74.0
LYD2_k127_2274136_12 rod shape-determining protein mreB K03569 - - 0.0002643 43.0
LYD2_k127_2274136_2 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 436.0
LYD2_k127_2274136_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 411.0
LYD2_k127_2274136_4 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000111 270.0
LYD2_k127_2274136_5 endonuclease III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006086 256.0
LYD2_k127_2274136_6 inositol monophosphate 1-phosphatase activity K01082,K01092 - 3.1.3.25,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000006221 225.0
LYD2_k127_2274136_7 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000001307 169.0
LYD2_k127_2274136_8 translation release factor activity - - - 0.000000000000000000000000000000000000000611 152.0
LYD2_k127_2274136_9 RDD family - - - 0.00000000000000000000000002343 113.0
LYD2_k127_2277558_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 606.0
LYD2_k127_2277558_1 oxidoreductase activity K00316 - 1.5.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 525.0
LYD2_k127_2277558_2 Domain of unknown function (DUF4178) - - - 0.00000000000000000000000000000000000000000000000000000000000000000005606 244.0
LYD2_k127_2277558_3 Domain of Unknown Function (DUF350) - - - 0.00000000004698 65.0
LYD2_k127_2287656_1 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009351 496.0
LYD2_k127_2287656_2 - - - - 0.0000000000000000000000000008005 120.0
LYD2_k127_2287656_3 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000001159 101.0
LYD2_k127_2287656_4 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.00000003119 59.0
LYD2_k127_2299124_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1096.0
LYD2_k127_2299124_1 PFAM AICARFT IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007584 610.0
LYD2_k127_2299124_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 536.0
LYD2_k127_2299124_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000002736 243.0
LYD2_k127_2299124_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000002104 213.0
LYD2_k127_2312421_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.0 1084.0
LYD2_k127_2312421_1 Conserved region in glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000002641 161.0
LYD2_k127_2312421_2 conserved protein (DUF2249) K07322 - - 0.0000000000000000000000000005056 115.0
LYD2_k127_2324920_0 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003881 301.0
LYD2_k127_2324920_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000005662 243.0
LYD2_k127_2324920_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000001064 111.0
LYD2_k127_2324920_3 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.000001053 54.0
LYD2_k127_2324920_4 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.000004404 50.0
LYD2_k127_2324920_5 histone H2A K63-linked ubiquitination K01768 - 4.6.1.1 0.00001293 56.0
LYD2_k127_2349472_0 Aminotransferase class I and II K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 291.0
LYD2_k127_2349472_1 Cyclophilin-like K09143 - - 0.000000000000000000000000000000000000000000000002737 175.0
LYD2_k127_2349472_2 Ferredoxin K05337 - - 0.0000000000000002777 80.0
LYD2_k127_2349472_3 PFAM Sulfotransferase domain - - - 0.000000000000004102 84.0
LYD2_k127_2349472_4 SEC-C Motif Domain Protein - - - 0.000000003359 66.0
LYD2_k127_2360347_0 UvrD-like helicase C-terminal domain K03656,K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 610.0
LYD2_k127_2360347_1 mevalonate kinase K00869 - 2.7.1.36 0.00000000000000000000000000000001029 134.0
LYD2_k127_2360347_2 Domain of unknown function (DUF4203) - - - 0.0000000000000000000000000000866 121.0
LYD2_k127_2360347_3 decarboxylase K01597 - 4.1.1.33 0.000000000000008337 84.0
LYD2_k127_2360347_4 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000001802 80.0
LYD2_k127_2380041_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1024.0
LYD2_k127_2380041_1 Major Facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 485.0
LYD2_k127_2380041_11 Cysteine-rich small domain K07162 - - 0.000000000000000009357 86.0
LYD2_k127_2380041_12 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000000007389 84.0
LYD2_k127_2380041_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004269 416.0
LYD2_k127_2380041_3 Dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000001492 231.0
LYD2_k127_2380041_4 denitrification pathway K02569,K15876 - - 0.0000000000000000000000000000000000000000000000000246 192.0
LYD2_k127_2380041_5 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000002308 176.0
LYD2_k127_2380041_6 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000000000000001064 135.0
LYD2_k127_2380041_7 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000008047 109.0
LYD2_k127_2380041_8 phosphatase activity K20881 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0008477,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0016799,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050483,GO:0050484 3.1.3.5 0.00000000000000000000001876 101.0
LYD2_k127_2380041_9 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 GO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0017148,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030423,GO:0031047,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032270,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0035194,GO:0040029,GO:0040033,GO:0043170,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045974,GO:0045975,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:2000112,GO:2000113 - 0.000000000000000000004043 94.0
LYD2_k127_2404463_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 459.0
LYD2_k127_2404463_1 Acid phosphatase homologues K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 406.0
LYD2_k127_2404463_2 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000000008501 160.0
LYD2_k127_2419408_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 9.441e-200 630.0
LYD2_k127_2419408_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 531.0
LYD2_k127_2419408_10 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000006899 137.0
LYD2_k127_2419408_11 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000003969 86.0
LYD2_k127_2419408_12 Transglycosylase SLT domain K08309 - - 0.000000000000004509 77.0
LYD2_k127_2419408_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 387.0
LYD2_k127_2419408_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 325.0
LYD2_k127_2419408_4 Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 292.0
LYD2_k127_2419408_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001324 294.0
LYD2_k127_2419408_6 metal ion binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000006081 239.0
LYD2_k127_2419408_7 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000000000003243 209.0
LYD2_k127_2419408_8 Archaea-specific editing domain of threonyl-tRNA synthetase - - - 0.0000000000000000000000000000000000000000000003593 172.0
LYD2_k127_2419408_9 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000001092 159.0
LYD2_k127_2428756_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 2.665e-203 639.0
LYD2_k127_2428756_1 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 366.0
LYD2_k127_2428756_2 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 322.0
LYD2_k127_2428756_3 NmrA-like family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000002787 203.0
LYD2_k127_2428756_4 PFAM ResB family protein K07399 - - 0.0000000000000000000000000000000000000000000002786 174.0
LYD2_k127_2428756_5 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000004642 93.0
LYD2_k127_2467817_0 PFAM Phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008344 425.0
LYD2_k127_2467817_1 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000003916 206.0
LYD2_k127_2467817_2 Type II secretion system (T2SS), protein J K02459 - - 0.00000000000000000000000003739 116.0
LYD2_k127_2467817_3 Prokaryotic N-terminal methylation motif K02457 - - 0.0000000000000000000001172 104.0
LYD2_k127_2467817_4 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.0000000000006011 80.0
LYD2_k127_2467817_5 general secretion pathway protein K02456,K02457,K02458,K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.000000001951 62.0
LYD2_k127_2467817_6 Type II secretion system (T2SS), protein K K02460 - - 0.00000003717 64.0
LYD2_k127_2473885_0 Carbon-nitrogen hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009703 338.0
LYD2_k127_2473885_1 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 322.0
LYD2_k127_2473885_2 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 293.0
LYD2_k127_2473885_3 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000005286 236.0
LYD2_k127_2473885_4 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000007313 123.0
LYD2_k127_2473885_5 Predicted membrane protein (DUF2318) - - - 0.0000000000000000003791 93.0
LYD2_k127_248462_0 HlyD membrane-fusion protein of T1SS K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 380.0
LYD2_k127_248462_1 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 - 2.1.1.200,3.5.1.19,6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001402 275.0
LYD2_k127_248462_2 Sugar (and other) transporter K03446 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001277 241.0
LYD2_k127_2492781_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 550.0
LYD2_k127_2492781_1 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 520.0
LYD2_k127_2492781_10 DNA-binding transcription factor activity K02274 - 1.9.3.1 0.00000000005058 66.0
LYD2_k127_2492781_11 - - - - 0.0000000001057 66.0
LYD2_k127_2492781_2 histidine kinase HAMP region domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 328.0
LYD2_k127_2492781_3 Pfam:Arch_ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 288.0
LYD2_k127_2492781_4 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001462 273.0
LYD2_k127_2492781_5 HEAT repeat - - - 0.000000000000000000000000000000000000000000000000000003173 208.0
LYD2_k127_2492781_6 PFAM response regulator receiver K03413 - - 0.000000000000000000000000000000000000003253 149.0
LYD2_k127_2492781_7 regulator, PATAN and FRGAF domain-containing - - - 0.0000000000000000000000000000001361 135.0
LYD2_k127_2492781_8 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000001333 120.0
LYD2_k127_2492781_9 PFAM CheW domain protein K03408 - - 0.000000000000000000001859 103.0
LYD2_k127_253121_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 5.793e-290 910.0
LYD2_k127_253121_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 2.534e-195 621.0
LYD2_k127_253121_10 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.000007517 48.0
LYD2_k127_253121_11 Glucose / Sorbosone dehydrogenase - - - 0.0006629 48.0
LYD2_k127_253121_2 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 501.0
LYD2_k127_253121_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 497.0
LYD2_k127_253121_4 CHRD domain - - - 0.000000000000000000000000000000000000009025 151.0
LYD2_k127_253121_5 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.000000000000000000000000000000000002141 149.0
LYD2_k127_253121_6 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.0000000000000000000000000000001431 130.0
LYD2_k127_253121_7 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000000001618 124.0
LYD2_k127_253121_8 PQ loop repeat K15383 - - 0.00000000000000000000147 98.0
LYD2_k127_253121_9 Modulates RecA activity K03565,K19002 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496 2.4.1.337 0.000000000000001461 82.0
LYD2_k127_2540760_0 cell redox homeostasis - - - 1.899e-209 664.0
LYD2_k127_2540760_1 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 327.0
LYD2_k127_2540760_2 RNase_H superfamily K07502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 291.0
LYD2_k127_2540760_3 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.000000000000000000000000000000000000174 142.0
LYD2_k127_2540760_4 response regulator - - - 0.0000000000000000000000000000000000009523 147.0
LYD2_k127_2540760_5 Histidine kinase - - - 0.00000000000000000000000000000004779 131.0
LYD2_k127_2548145_0 cell wall hydrolase K01449 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004224 278.0
LYD2_k127_2548145_1 DUF218 domain - - - 0.0000000000000004314 86.0
LYD2_k127_2548145_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000008938 66.0
LYD2_k127_2548145_3 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000002837 57.0
LYD2_k127_2548145_4 Mechanosensitive ion channel - - - 0.0005061 44.0
LYD2_k127_2568855_0 response regulator K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 495.0
LYD2_k127_2568855_1 histidine kinase, HAMP K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 355.0
LYD2_k127_2568855_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002313 252.0
LYD2_k127_2568855_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000648 201.0
LYD2_k127_2568855_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000002668 187.0
LYD2_k127_2568855_5 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.000000000000000000000000000000000001848 146.0
LYD2_k127_2568855_6 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000508 134.0
LYD2_k127_2568855_7 SdpI/YhfL protein family - - - 0.00000000000007646 72.0
LYD2_k127_2578238_0 PFAM natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 527.0
LYD2_k127_2578238_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 402.0
LYD2_k127_2578238_2 MgtE intracellular N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 385.0
LYD2_k127_2578238_3 Polyprenyl synthetase K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 340.0
LYD2_k127_2578238_4 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000002994 216.0
LYD2_k127_2606601_0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 523.0
LYD2_k127_2606601_2 nuclease activity - - - 0.00002741 48.0
LYD2_k127_262027_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.602e-215 674.0
LYD2_k127_262027_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 386.0
LYD2_k127_262027_10 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000009454 205.0
LYD2_k127_262027_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000005801 201.0
LYD2_k127_262027_12 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000543 176.0
LYD2_k127_262027_13 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000001204 167.0
LYD2_k127_262027_14 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000003395 153.0
LYD2_k127_262027_15 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000226 146.0
LYD2_k127_262027_16 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000001044 135.0
LYD2_k127_262027_17 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000882 134.0
LYD2_k127_262027_18 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000002383 108.0
LYD2_k127_262027_19 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000005376 107.0
LYD2_k127_262027_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 332.0
LYD2_k127_262027_20 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001528 99.0
LYD2_k127_262027_21 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000001423 75.0
LYD2_k127_262027_22 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000003083 65.0
LYD2_k127_262027_3 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003729 326.0
LYD2_k127_262027_4 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002959 282.0
LYD2_k127_262027_5 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009496 274.0
LYD2_k127_262027_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000002273 230.0
LYD2_k127_262027_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000002304 228.0
LYD2_k127_262027_8 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000005189 229.0
LYD2_k127_262027_9 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000000684 214.0
LYD2_k127_2623990_0 ATPase BadF BadG BcrA BcrD type - - - 0.0 1309.0
LYD2_k127_2623990_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 2.187e-270 848.0
LYD2_k127_2623990_10 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000000003555 193.0
LYD2_k127_2623990_11 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000001911 183.0
LYD2_k127_2623990_12 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000000000000005136 160.0
LYD2_k127_2623990_13 SMART HNH nuclease K07451 - - 0.000000000000000000000000000000000000003857 150.0
LYD2_k127_2623990_14 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000005347 144.0
LYD2_k127_2623990_15 Protein of unknown function (DUF507) - - - 0.0000000000000000000000000008018 115.0
LYD2_k127_2623990_16 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000115 115.0
LYD2_k127_2623990_17 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000001714 104.0
LYD2_k127_2623990_18 Protein of unknown function (DUF507) - - - 0.000000000000000000000003263 104.0
LYD2_k127_2623990_19 4Fe-4S binding domain - - - 0.000000000000000009756 84.0
LYD2_k127_2623990_2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 492.0
LYD2_k127_2623990_3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000791 466.0
LYD2_k127_2623990_4 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 356.0
LYD2_k127_2623990_5 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 353.0
LYD2_k127_2623990_6 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736 306.0
LYD2_k127_2623990_7 PSP1 C-terminal conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001333 254.0
LYD2_k127_2623990_8 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000006545 216.0
LYD2_k127_2623990_9 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000001092 225.0
LYD2_k127_2634324_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 291.0
LYD2_k127_2634324_2 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000001036 199.0
LYD2_k127_2634324_3 - - - - 0.000000000000000000000000000004675 124.0
LYD2_k127_2634324_4 Domain of unknown function (DUF4382) - - - 0.0000000000000000001163 94.0
LYD2_k127_2634324_5 Domain of unknown function (DUF4382) - - - 0.0002336 46.0
LYD2_k127_2634324_6 FR47-like protein - - - 0.0002881 46.0
LYD2_k127_263746_0 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 304.0
LYD2_k127_263746_1 Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001418 250.0
LYD2_k127_263746_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000002583 232.0
LYD2_k127_263861_0 Protein conserved in bacteria - - - 1.524e-226 728.0
LYD2_k127_263861_1 TIGRFAM ribonuclease, Rne Rng family K08300,K08301 - 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 590.0
LYD2_k127_263861_10 Sirohaem biosynthesis protein central K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000007136 174.0
LYD2_k127_263861_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007732 359.0
LYD2_k127_263861_3 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 340.0
LYD2_k127_263861_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 293.0
LYD2_k127_263861_5 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002804 276.0
LYD2_k127_263861_6 Tetratricopeptide repeat K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000001474 237.0
LYD2_k127_263861_7 lactate metabolic process K11473,K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000001509 243.0
LYD2_k127_263861_8 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000000000000000000000000000000000000000000000000000000000009699 226.0
LYD2_k127_263861_9 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000003072 188.0
LYD2_k127_2650512_0 ATP synthase alpha/beta family, nucleotide-binding domain K02118 - - 1.071e-203 642.0
LYD2_k127_2650512_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044464,GO:0044769,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1902600 3.6.3.14,3.6.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005286 559.0
LYD2_k127_2650512_2 ATP synthase subunit D K02120 - - 0.00000000000000000000000000000000000000000000000000000000000000001476 230.0
LYD2_k127_2650512_3 CHASE K02488,K21009 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000004244 226.0
LYD2_k127_2650512_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.00000000000000000000000000002562 124.0
LYD2_k127_2650512_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.000000000000000000000000005615 114.0
LYD2_k127_2650512_7 PFAM H transporting two-sector ATPase C subunit K02124 - - 0.00000000000000002199 82.0
LYD2_k127_2650512_8 Protein of unknown function (DUF2892) - - - 0.000000000006471 72.0
LYD2_k127_2667985_0 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003394 355.0
LYD2_k127_2667985_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 343.0
LYD2_k127_2667985_2 cytochrome c biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000002067 193.0
LYD2_k127_2667985_3 cytochrome complex assembly - - - 0.0000000000000000000000000000000000000000000000000003471 189.0
LYD2_k127_2667985_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000001153 170.0
LYD2_k127_2667985_5 Permease MlaE K02066 - - 0.00000000000000000003317 92.0
LYD2_k127_2679413_0 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000000009358 217.0
LYD2_k127_2679413_1 - - - - 0.000000000000000001373 93.0
LYD2_k127_2698684_0 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1491.0
LYD2_k127_2698684_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.431e-208 655.0
LYD2_k127_2698684_10 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000377 233.0
LYD2_k127_2698684_11 Voltage gated chloride channel K03281 - - 0.000009893 50.0
LYD2_k127_2698684_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007703 568.0
LYD2_k127_2698684_3 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006972 491.0
LYD2_k127_2698684_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 422.0
LYD2_k127_2698684_5 Amino acid kinase family K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 362.0
LYD2_k127_2698684_6 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 354.0
LYD2_k127_2698684_7 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002948 276.0
LYD2_k127_2698684_8 Formylmethanofuran dehydrogenase, subunit e K11261 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000002373 234.0
LYD2_k127_2698684_9 PFAM phosphoesterase RecJ domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001363 240.0
LYD2_k127_2717243_0 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005715 416.0
LYD2_k127_2717243_1 domain, Protein K01176,K03332 - 3.2.1.1,3.2.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004852 388.0
LYD2_k127_2717243_2 COG0223 Methionyl-tRNA formyltransferase - - - 0.00000000000000000000000000004461 127.0
LYD2_k127_2717243_3 Polysaccharide deacetylase - - - 0.0000000000001895 81.0
LYD2_k127_2717243_4 Tetratricopeptide repeat - - - 0.000000000000347 79.0
LYD2_k127_277903_0 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000002882 170.0
LYD2_k127_277903_1 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000000000000000000000000001053 146.0
LYD2_k127_277903_2 sigma factor antagonist activity K04757 - 2.7.11.1 0.0000000000003105 83.0
LYD2_k127_277903_3 - - - - 0.00000000008281 75.0
LYD2_k127_277903_4 PFAM Sulfate transporter antisigma-factor antagonist STAS - - - 0.000003021 54.0
LYD2_k127_2779256_0 Belongs to the aldehyde dehydrogenase family K13821 - 1.2.1.88,1.5.5.2 0.0 1078.0
LYD2_k127_2779256_1 Protein of unknown function, DUF255 K06888 - - 2.36e-252 794.0
LYD2_k127_2779256_10 Domain in cystathionine beta-synthase and other proteins. K07182 - - 0.00000000000000000000000000000000000000000000000000000000000006778 222.0
LYD2_k127_2779256_11 PFAM Glycosyl hydrolase family 3 N terminal domain K01207,K05349 - 3.2.1.21,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000002353 220.0
LYD2_k127_2779256_12 methyltransferase activity - - - 0.00000000000000000000000000000000000000005113 158.0
LYD2_k127_2779256_13 NAD dependent epimerase dehydratase family protein - - - 0.00000000000000000000000000000001937 139.0
LYD2_k127_2779256_16 Response regulator receiver - - - 0.000000000000000000000000004455 115.0
LYD2_k127_2779256_17 Predicted membrane protein (DUF2318) - - - 0.0000000000000000001495 93.0
LYD2_k127_2779256_19 - - - - 0.00000000000001646 75.0
LYD2_k127_2779256_2 metal ion transmembrane transporter activity K03322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 516.0
LYD2_k127_2779256_20 Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1 - - - 0.000003497 51.0
LYD2_k127_2779256_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 441.0
LYD2_k127_2779256_4 Domain in cystathionine beta-synthase and other proteins. K07182 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 416.0
LYD2_k127_2779256_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 360.0
LYD2_k127_2779256_6 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004231 287.0
LYD2_k127_2779256_7 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006602 280.0
LYD2_k127_2779256_8 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000002206 239.0
LYD2_k127_2779256_9 Domain of unknown function (DUF4337) - - - 0.000000000000000000000000000000000000000000000000000000000000001461 223.0
LYD2_k127_277941_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 433.0
LYD2_k127_277941_1 S-methyl-5'-thioadenosine phosphorylase K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004645,GO:0004731,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0010033,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017061,GO:0017144,GO:0019221,GO:0019509,GO:0019752,GO:0023052,GO:0032259,GO:0034097,GO:0034641,GO:0035722,GO:0042221,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070671,GO:0070887,GO:0071265,GO:0071267,GO:0071310,GO:0071345,GO:0071349,GO:0071704,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009645 321.0
LYD2_k127_277941_2 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 313.0
LYD2_k127_277941_3 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 303.0
LYD2_k127_277941_4 PFAM Pyruvate kinase, alpha beta domain K09126 - - 0.00000000000000000000000000000000000000000000000000004902 192.0
LYD2_k127_277941_5 nickel cation binding K04651,K19640 - - 0.00000000000000000000000000001081 122.0
LYD2_k127_277941_6 YtxH-like protein - - - 0.0000000000000000000000001584 109.0
LYD2_k127_2782138_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 2.914e-198 624.0
LYD2_k127_2782138_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 453.0
LYD2_k127_2782138_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 312.0
LYD2_k127_2782138_3 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000001404 215.0
LYD2_k127_2782138_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000003068 198.0
LYD2_k127_2782138_5 transcriptional regulator - GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000006836 123.0
LYD2_k127_2829662_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008815 527.0
LYD2_k127_2829662_1 Domain of unknown function (DUF4388) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 449.0
LYD2_k127_2829662_2 CO dehydrogenase/acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.00000000000000000002298 94.0
LYD2_k127_2841217_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 2.529e-194 621.0
LYD2_k127_2841217_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 480.0
LYD2_k127_2841217_2 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004374 457.0
LYD2_k127_2841217_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 366.0
LYD2_k127_2841217_4 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000003325 250.0
LYD2_k127_2842393_0 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000001919 223.0
LYD2_k127_2842393_1 MGS-like domain - - - 0.000000000000000000000000000000000000000000000000005357 189.0
LYD2_k127_2842393_2 PFAM phosphofructokinase K00850 - 2.7.1.11 0.00000000000000002864 83.0
LYD2_k127_2842393_3 PFAM Uncharacterised protein family (UPF0153) - - - 0.00003947 48.0
LYD2_k127_2854284_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 557.0
LYD2_k127_2854284_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 - 1.4.1.2,1.4.1.3,1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 357.0
LYD2_k127_2866022_0 Elongation factor SelB, winged helix K03833 - - 5.011e-209 667.0
LYD2_k127_2866022_1 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 529.0
LYD2_k127_2866022_2 ParB-like nuclease domain K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 328.0
LYD2_k127_2866022_3 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882 327.0
LYD2_k127_2866022_4 PFAM CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 317.0
LYD2_k127_2866022_5 Ecdysteroid kinase K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000001067 213.0
LYD2_k127_2866022_6 NTPase - - - 0.000000000000000000000000000000000000002671 152.0
LYD2_k127_2867701_0 Succinyl-CoA ligase like flavodoxin domain K01905,K22224 - 6.2.1.13 3.049e-253 799.0
LYD2_k127_2867701_1 GTP-binding GTPase Middle Region K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 617.0
LYD2_k127_2867701_10 Belongs to the rubredoxin family - GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006091,GO:0008150,GO:0008152,GO:0008199,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0055114 - 0.00000000000000000000001832 100.0
LYD2_k127_2867701_11 TIGRFAM desulfoferrodoxin FeS4 iron-binding domain K05919 - 1.15.1.2 0.000000003542 58.0
LYD2_k127_2867701_12 Ami_3 K01448 - 3.5.1.28 0.000001289 53.0
LYD2_k127_2867701_2 PFAM Radical SAM domain protein K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 593.0
LYD2_k127_2867701_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009321 436.0
LYD2_k127_2867701_4 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 408.0
LYD2_k127_2867701_5 belongs to the CobB CobQ family K06873 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 318.0
LYD2_k127_2867701_6 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 289.0
LYD2_k127_2867701_7 PFAM Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005527 249.0
LYD2_k127_2867701_8 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000001176 226.0
LYD2_k127_2867701_9 iron-sulfur cluster assembly - - - 0.000000000000000000000001907 104.0
LYD2_k127_2875344_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 1.103e-277 862.0
LYD2_k127_2875344_1 Pyridoxal-phosphate dependent enzyme K06001 - 4.2.1.20 4.082e-225 704.0
LYD2_k127_2875344_10 Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000000000000000181 155.0
LYD2_k127_2875344_11 SMART Rhodanese domain protein - - - 0.0000000000000000000000000000000000007298 151.0
LYD2_k127_2875344_12 Protein of unknown function (DUF1456) - - - 0.00000000000000000000000000001494 118.0
LYD2_k127_2875344_13 - - - - 0.000000000000000000000000002181 124.0
LYD2_k127_2875344_14 Protein of unknown function DUF134 - - - 0.00000000000000000000000003902 110.0
LYD2_k127_2875344_15 Antioxidant, AhpC TSA family - - - 0.0000000000001226 74.0
LYD2_k127_2875344_16 - - - - 0.000000000001005 69.0
LYD2_k127_2875344_17 Thioredoxin-like - - - 0.0001427 48.0
LYD2_k127_2875344_18 thiosulfate sulfurtransferase activity - - - 0.0008573 46.0
LYD2_k127_2875344_2 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 3.183e-215 677.0
LYD2_k127_2875344_3 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006957 519.0
LYD2_k127_2875344_4 PFAM Phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 398.0
LYD2_k127_2875344_5 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009964 387.0
LYD2_k127_2875344_6 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000695 353.0
LYD2_k127_2875344_7 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000316 246.0
LYD2_k127_2875344_8 ATP cone domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002033 244.0
LYD2_k127_2875344_9 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000002899 212.0
LYD2_k127_2881267_0 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 341.0
LYD2_k127_2881267_1 TIGRFAM riboflavin biosynthesis protein RibF K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 289.0
LYD2_k127_2881267_10 Histidine kinase K02660,K11525 - - 0.0002142 54.0
LYD2_k127_2881267_2 HNH nucleases - - - 0.00000000000000000000000000000000000000000000001171 174.0
LYD2_k127_2881267_3 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000004179 170.0
LYD2_k127_2881267_4 Adenylylsulphate kinase K00860 - 2.7.1.25 0.00000000000000000000000000000000000000298 152.0
LYD2_k127_2881267_5 - - - - 0.0000000000000000000000000000000000006182 144.0
LYD2_k127_2881267_6 MOSC domain - - - 0.000000000000000000000000000000003705 131.0
LYD2_k127_2881267_7 isomerase activity K01821 - 5.3.2.6 0.0000000000000000000000001572 109.0
LYD2_k127_2881267_8 Diguanylate cyclase - - - 0.000000000000000001695 100.0
LYD2_k127_2881267_9 GAF domain - - - 0.0000000000000001103 94.0
LYD2_k127_288501_0 GTP-binding protein TypA K06207 - - 1.412e-262 820.0
LYD2_k127_288501_1 response regulator K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 413.0
LYD2_k127_288501_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000004675 110.0
LYD2_k127_2887412_0 Bacterial regulatory protein, Fis family K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004806 529.0
LYD2_k127_2887412_1 GHKL domain K13598 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 518.0
LYD2_k127_2887412_2 Adenosine specific kinase K09129 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000035 262.0
LYD2_k127_2887412_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002157 239.0
LYD2_k127_2887412_4 PFAM Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000000000000002045 166.0
LYD2_k127_2887412_5 Histidine biosynthesis bifunctional protein HisIE K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000007043 162.0
LYD2_k127_2887412_7 Phosphoribosyl-AMP cyclohydrolase K01496,K01497,K01523,K01814,K11755 GO:0000105,GO:0000287,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052803,GO:0071704,GO:0071944,GO:0075136,GO:0075139,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.5.4.25,3.6.1.31,5.3.1.16 0.0000000000000000000000004278 107.0
LYD2_k127_2887412_8 - - - - 0.0000000001803 62.0
LYD2_k127_2979994_0 Elongation factor G, domain IV K02355 - - 4.827e-296 922.0
LYD2_k127_2979994_1 Glucose-1-phosphate thymidylyltransferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 433.0
LYD2_k127_2979994_10 - - - - 0.00000002101 59.0
LYD2_k127_2979994_11 Positive regulator of sigma(E), RseC MucC K03803 - - 0.00002263 52.0
LYD2_k127_2979994_2 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007798 422.0
LYD2_k127_2979994_3 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 340.0
LYD2_k127_2979994_4 Male sterility protein K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001625 276.0
LYD2_k127_2979994_5 ABC1 family K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006675 288.0
LYD2_k127_2979994_6 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000005587 242.0
LYD2_k127_2979994_7 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000004438 193.0
LYD2_k127_2979994_8 Protein of unknown function (DUF2442) - - - 0.0000000000000000000000000000003322 124.0
LYD2_k127_3025823_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000001104 233.0
LYD2_k127_3025823_1 PFAM LemA family protein K03744 - - 0.00000000000000000000000000000000000000000000000000000001578 200.0
LYD2_k127_3025823_2 LysM domain K01449,K19223 - 3.5.1.28 0.0000000000000000000000000000000002997 133.0
LYD2_k127_3025823_3 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000000000001501 130.0
LYD2_k127_3025823_4 acr, cog1993 K09137 - - 0.0000000000000000000001323 100.0
LYD2_k127_3177515_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 391.0
LYD2_k127_3177515_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 362.0
LYD2_k127_3177515_2 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006888 256.0
LYD2_k127_3177515_3 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000004117 205.0
LYD2_k127_3177515_4 denitrification pathway - - - 0.0000000000000000000000000000000000000000000000001177 187.0
LYD2_k127_3177515_5 denitrification pathway - - - 0.00000000000000000000000000000000000000153 159.0
LYD2_k127_3177515_6 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000002478 73.0
LYD2_k127_3177515_7 Putative Ig domain - - - 0.00005736 46.0
LYD2_k127_3198105_0 Phosphoglycerate kinase K00927 - 2.7.2.3 9.996e-200 628.0
LYD2_k127_3198105_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 515.0
LYD2_k127_3198105_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 482.0
LYD2_k127_3198105_3 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 431.0
LYD2_k127_3198105_4 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 374.0
LYD2_k127_3198105_5 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000000000000000000000000000000000000000000001623 226.0
LYD2_k127_3219272_0 Cytochrome c3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 314.0
LYD2_k127_3219272_1 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000173 167.0
LYD2_k127_3219272_2 metalloendopeptidase activity K03799 - - 0.00000000000000000000000003445 120.0
LYD2_k127_3231976_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1173.0
LYD2_k127_3231976_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 569.0
LYD2_k127_3231976_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 439.0
LYD2_k127_3231976_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 413.0
LYD2_k127_3231976_4 PFAM PfkB K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 383.0
LYD2_k127_3231976_5 SMART Tetratricopeptide - - - 0.000000000000000000000006428 108.0
LYD2_k127_3233871_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000008766 175.0
LYD2_k127_3233871_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.00000000000000000000000000000000000000000003893 163.0
LYD2_k127_3233871_2 YceI-like domain - - - 0.0000000000000000000000000000000000000003521 156.0
LYD2_k127_3233871_3 PFAM nitrogen-fixing NifU domain protein - - - 0.00000000000000000000002622 102.0
LYD2_k127_3233871_5 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000001014 89.0
LYD2_k127_3233871_6 TIGRFAM alkylhydroperoxidase like protein, AhpD family - - - 0.000000000000004737 81.0
LYD2_k127_3242189_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 308.0
LYD2_k127_3242189_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001844 265.0
LYD2_k127_3242189_2 FtsX-like permease family - - - 0.00000000000000006323 81.0
LYD2_k127_3277504_0 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000001583 198.0
LYD2_k127_3277504_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000001146 149.0
LYD2_k127_3277504_2 Protein of unknown function (DUF3617) - - - 0.00000000000000000000000000000000003786 138.0
LYD2_k127_3277504_3 Arginine-tRNA-protein transferase, N terminus K21420 - 2.3.2.29 0.0000000000000000000000000000000002521 141.0
LYD2_k127_3277504_4 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K13531 - 2.1.1.63 0.00000000000000000000000000000007349 131.0
LYD2_k127_3277504_5 - - - - 0.000000000000000000000000573 108.0
LYD2_k127_3277504_6 - - - - 0.0000000000315 68.0
LYD2_k127_3308181_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 312.0
LYD2_k127_3308181_1 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000003898 274.0
LYD2_k127_3353138_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000000000000000000000003215 238.0
LYD2_k127_3353138_1 Calcium/calmodulin dependent protein kinase II association domain - - - 0.000000000000000000000000000000000005158 141.0
LYD2_k127_3353138_2 copG family - - - 0.0000000000000002521 80.0
LYD2_k127_3353138_3 Mur ligase, middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.000000001364 62.0
LYD2_k127_3362898_0 response to heat K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005785 460.0
LYD2_k127_3362898_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005131 475.0
LYD2_k127_3362898_2 - - - - 0.000000000000000000000000000000000000000000000000001944 185.0
LYD2_k127_3362898_3 UTRA K03710 - - 0.0000000000000000000000000000001773 133.0
LYD2_k127_3362898_4 Universal stress protein family K07090 - - 0.00000000000000000000000000007382 122.0
LYD2_k127_3362898_5 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000009197 68.0
LYD2_k127_3368770_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.486e-257 801.0
LYD2_k127_3368770_1 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 478.0
LYD2_k127_3368770_10 - - - - 0.000000000000000000000006211 108.0
LYD2_k127_3368770_2 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003872 271.0
LYD2_k127_3368770_3 ROK family K00845,K13967,K19979,K20433 - 2.7.1.188,2.7.1.2,2.7.1.214,2.7.1.60,5.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000005737 265.0
LYD2_k127_3368770_4 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000001108 239.0
LYD2_k127_3368770_5 Peptidase family M23 K21471 - - 0.0000000000000000000000000000000000000000000000000000000001107 221.0
LYD2_k127_3368770_6 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000000000000000000000000000000000000000009154 192.0
LYD2_k127_3368770_7 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 - - 0.000000000000000000000000000000000015 147.0
LYD2_k127_3368770_8 transport system, periplasmic component K01989 - - 0.00000000000000000000000000001879 129.0
LYD2_k127_3368770_9 Transcriptional regulator, arsR family - - - 0.0000000000000000000000004427 108.0
LYD2_k127_3392854_0 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 382.0
LYD2_k127_3392854_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004338 338.0
LYD2_k127_3392854_2 rRNA (uridine-N3-)-methyltransferase activity K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 293.0
LYD2_k127_3392854_3 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 284.0
LYD2_k127_3392854_4 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000001284 218.0
LYD2_k127_3392854_5 PFAM PHP domain - - - 0.0000000000000000000000000000000000000000000009033 172.0
LYD2_k127_3392854_6 - - - - 0.000000000000000000000000000000000000358 145.0
LYD2_k127_3392854_7 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000009582 115.0
LYD2_k127_3392854_8 Putative zinc- or iron-chelating domain - - - 0.000000000000001264 78.0
LYD2_k127_3392854_9 SMART Transport-associated and nodulation region K04065 - - 0.00000007305 55.0
LYD2_k127_3403589_0 phosphoglucosamine mutase activity K01835,K01840 - 5.4.2.2,5.4.2.8 5.393e-219 690.0
LYD2_k127_3403589_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 1.057e-203 636.0
LYD2_k127_3403589_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000005564 168.0
LYD2_k127_3432739_0 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000092 617.0
LYD2_k127_3432739_1 Domain of unknown function (DUF3459) K01236 - 3.2.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004322 512.0
LYD2_k127_3432739_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002432 276.0
LYD2_k127_3432739_3 Membrane - - - 0.00000000000000000000000000000000000001288 150.0
LYD2_k127_3432739_4 hyperosmotic response K04065 - - 0.000000000001518 72.0
LYD2_k127_3432739_5 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.0003284 46.0
LYD2_k127_3436107_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01006 - 2.7.9.1 0.0 1188.0
LYD2_k127_3436107_1 COG2200 FOG EAL domain K20963 - 3.1.4.52 0.0000000005043 68.0
LYD2_k127_3436107_2 Peptidase C26 - - - 0.000000214 55.0
LYD2_k127_3436107_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.000004329 51.0
LYD2_k127_3454122_0 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 1.5e-323 1000.0
LYD2_k127_3454122_1 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 519.0
LYD2_k127_3454122_2 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000003673 188.0
LYD2_k127_3454122_3 CO-methylating acetyl-CoA synthase activity K00193,K14138 - 2.3.1.169 0.0000000000000000000000000000000001403 134.0
LYD2_k127_3460741_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 386.0
LYD2_k127_3460741_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000002568 231.0
LYD2_k127_3460741_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000001977 147.0
LYD2_k127_3469637_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009223 496.0
LYD2_k127_3469637_1 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 503.0
LYD2_k127_3469637_2 TIGRFAM cytochrome C family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 395.0
LYD2_k127_3469637_3 lyase activity K01387,K03301 - 3.4.24.3 0.0000000000000000000000000000000000000000000000000000000004885 213.0
LYD2_k127_3469637_4 Histidine kinase HAMP - - - 0.0000000000000000000000000001805 117.0
LYD2_k127_3469637_5 Response regulator receiver - - - 0.000008985 56.0
LYD2_k127_3471321_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 8.65e-197 622.0
LYD2_k127_3471321_1 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 484.0
LYD2_k127_3471321_2 Spermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001307 278.0
LYD2_k127_3471321_3 - - - - 0.0000000000002277 73.0
LYD2_k127_3471321_4 Transposase and inactivated derivatives - - - 0.00000000000279 70.0
LYD2_k127_3485512_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 5.806e-279 881.0
LYD2_k127_3485512_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 486.0
LYD2_k127_3485512_2 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000000000001614 155.0
LYD2_k127_3485512_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000006955 146.0
LYD2_k127_3485512_4 - - - - 0.00000000000000000000001635 113.0
LYD2_k127_3485512_5 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.000000000000000000005015 93.0
LYD2_k127_3485512_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000009667 78.0
LYD2_k127_3498777_0 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 5.94e-303 946.0
LYD2_k127_3498777_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 3.217e-294 914.0
LYD2_k127_3498777_2 reductase, alpha subunit K00394 - 1.8.99.2 3.17e-251 783.0
LYD2_k127_3498777_3 FAD dependent oxidoreductase K16885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 596.0
LYD2_k127_3498777_4 nitrate reductase activity K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 402.0
LYD2_k127_3498777_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000001805 108.0
LYD2_k127_3506968_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 414.0
LYD2_k127_3506968_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000012 279.0
LYD2_k127_3506968_2 glycolate biosynthetic process K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000002431 244.0
LYD2_k127_3506968_3 KOW (Kyprides, Ouzounis, Woese) motif. K05785 - - 0.000000000000000000000000000000000001314 144.0
LYD2_k127_3506968_4 DNA-binding transcription factor activity K18996 - - 0.00000000000000000000003903 102.0
LYD2_k127_3565592_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 9.213e-223 707.0
LYD2_k127_3565592_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 5.628e-205 655.0
LYD2_k127_3565592_10 Autoinducer binding domain K20334 - - 0.000000000000000615 80.0
LYD2_k127_3565592_2 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 522.0
LYD2_k127_3565592_3 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 471.0
LYD2_k127_3565592_4 response regulator receiver K02481,K07712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 394.0
LYD2_k127_3565592_5 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001659 268.0
LYD2_k127_3565592_6 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000009535 212.0
LYD2_k127_3565592_7 PFAM Amidohydrolase 2 - - - 0.000000000000000000000000000000000001341 152.0
LYD2_k127_3565592_8 transcriptional regulator containing an HTH domain fused to a Zn-ribbon K07743 - - 0.000000000000000000000000000000001092 133.0
LYD2_k127_3565592_9 Protein required for attachment to host cells - - - 0.000000000000000000000000002647 117.0
LYD2_k127_360444_0 Extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 571.0
LYD2_k127_360444_1 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 445.0
LYD2_k127_360444_2 ABC-type sugar transport system, permease component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 355.0
LYD2_k127_360444_3 Binding-protein-dependent transport system inner membrane component K02025,K15771 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 354.0
LYD2_k127_360444_4 PFAM aldo keto reductase K07079 - - 0.0000000000000000000000005137 107.0
LYD2_k127_360444_5 - - - - 0.0000000000000000000001866 97.0
LYD2_k127_3672692_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 355.0
LYD2_k127_3672692_1 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 286.0
LYD2_k127_3672692_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008267 272.0
LYD2_k127_3672692_3 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000221 263.0
LYD2_k127_3672692_4 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000003952 166.0
LYD2_k127_3690983_0 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002006 292.0
LYD2_k127_3690983_1 ATPase activity K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000008235 239.0
LYD2_k127_3690983_2 Putative ATP-binding cassette K01992 - - 0.000000000000000000000000000000000000000000000000000000003352 219.0
LYD2_k127_3690983_3 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000004722 51.0
LYD2_k127_3741729_0 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 377.0
LYD2_k127_3741729_1 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000003085 231.0
LYD2_k127_3741729_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.00000000000000000000000000000000000000000000000000000002229 199.0
LYD2_k127_3741729_3 cysteine-type peptidase activity K19223 - - 0.0000000000000000000000000000000000000002037 163.0
LYD2_k127_3741729_4 cyclic nucleotide binding K10914 - - 0.0000000000000000000000000000000009928 132.0
LYD2_k127_3741729_5 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000000000000000008409 123.0
LYD2_k127_3741729_6 PFAM amino acid-binding ACT domain protein - - - 0.00000000005688 68.0
LYD2_k127_3781196_0 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 466.0
LYD2_k127_3781196_1 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 421.0
LYD2_k127_3781196_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 294.0
LYD2_k127_3781196_3 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.00000000000000000000000000000000000000000001747 165.0
LYD2_k127_3781196_4 diguanylate cyclase - - - 0.00000000000000000000000000000000002644 153.0
LYD2_k127_3781196_5 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000001933 98.0
LYD2_k127_3783540_0 Ecdysteroid kinase K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000001243 258.0
LYD2_k127_3783540_1 Uncharacterised protein family (UPF0158) - - - 0.00000001109 64.0
LYD2_k127_3825752_0 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 298.0
LYD2_k127_3825752_1 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000001477 248.0
LYD2_k127_3825752_2 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000001774 188.0
LYD2_k127_3826255_0 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 5.123e-292 912.0
LYD2_k127_3826255_1 family UPF0324 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 414.0
LYD2_k127_3826255_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000002008 61.0
LYD2_k127_3826255_11 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000007749 64.0
LYD2_k127_3826255_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 315.0
LYD2_k127_3826255_3 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006118 271.0
LYD2_k127_3826255_4 Cytidylate kinase-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001802 250.0
LYD2_k127_3826255_5 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000002698 231.0
LYD2_k127_3826255_6 PFAM CBS domain - - - 0.000000000000000000000000000000000004654 141.0
LYD2_k127_3826255_7 Hydrolase, P-loop family K06925 - - 0.000000000000000000000000157 111.0
LYD2_k127_3826255_8 CHASE K02488,K21009 - 2.7.7.65 0.0000000000000000000001116 102.0
LYD2_k127_3826255_9 PFAM Methylamine - - - 0.000000000000000264 85.0
LYD2_k127_3860740_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.924e-212 671.0
LYD2_k127_3860740_1 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 530.0
LYD2_k127_3860740_2 - - - - 0.0000002514 55.0
LYD2_k127_389222_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 2.592e-295 914.0
LYD2_k127_389222_1 ACT domain K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000001245 214.0
LYD2_k127_389222_2 NosL - - - 0.00000000000000000000000001428 114.0
LYD2_k127_3901793_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 316.0
LYD2_k127_3901793_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006584 283.0
LYD2_k127_3901793_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003938 285.0
LYD2_k127_394734_0 PFAM Mannosyl oligosaccharide glucosidase - - - 0.0 1137.0
LYD2_k127_394734_1 curli production assembly transport component CsgG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 308.0
LYD2_k127_394734_2 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 298.0
LYD2_k127_394734_3 histidine kinase, HAMP K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000003264 272.0
LYD2_k127_394734_4 PFAM pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000000000000003758 164.0
LYD2_k127_394734_5 epimerase dehydratase K07071 - - 0.00000000000000000000000000000000001644 141.0
LYD2_k127_3986158_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1024.0
LYD2_k127_3986158_1 spermidine synthase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 509.0
LYD2_k127_3986158_2 UbiA prenyltransferase family K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 345.0
LYD2_k127_3986158_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000085 273.0
LYD2_k127_3986158_4 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000001046 207.0
LYD2_k127_3986158_5 Cytochrome c K12263 - - 0.0000000000000006793 83.0
LYD2_k127_3986158_6 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000697 79.0
LYD2_k127_3986158_7 Protein of unknown function (DUF1573) - - - 0.00003002 48.0
LYD2_k127_4045542_0 Belongs to the helicase family. UvrD subfamily - - - 8.072e-229 740.0
LYD2_k127_4045542_1 Anthranilate synthase component I K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 450.0
LYD2_k127_4045542_2 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) - - - 0.000001383 55.0
LYD2_k127_4115400_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 1.706e-274 857.0
LYD2_k127_4115400_1 Phosphoglycerate kinase K00927 - 2.7.2.3 4.584e-195 616.0
LYD2_k127_4115400_2 PFAM phosphofructokinase K00850 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 540.0
LYD2_k127_4137514_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 416.0
LYD2_k127_4137514_1 Flavodoxin-like fold K19784 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007739 247.0
LYD2_k127_4137514_2 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000007249 237.0
LYD2_k127_4137514_3 FeS cluster assembly scaffold protein NifU K04488 - - 0.000000000000000000000000000000000000000000000000000006648 192.0
LYD2_k127_4137514_4 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.000000000000000000000000000000000000000000000000000401 187.0
LYD2_k127_4137514_5 Transcriptional regulator - - - 0.0000000000000000000000000000000000000007789 153.0
LYD2_k127_4137514_6 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000005361 135.0
LYD2_k127_4137514_7 Sulfurtransferase TusA - - - 0.000000000000000000000003548 104.0
LYD2_k127_42089_0 DHHA2 domain K15986 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 557.0
LYD2_k127_42089_1 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 533.0
LYD2_k127_42089_10 Phage integrase, N-terminal SAM-like domain - - - 0.000000000002038 68.0
LYD2_k127_42089_11 Universal stress protein family - - - 0.00000000003119 71.0
LYD2_k127_42089_12 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000003034 64.0
LYD2_k127_42089_13 - - - - 0.0000001203 63.0
LYD2_k127_42089_14 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000001881 57.0
LYD2_k127_42089_16 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.00003453 46.0
LYD2_k127_42089_2 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008226 463.0
LYD2_k127_42089_3 PFAM Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 432.0
LYD2_k127_42089_4 Oxidoreductase FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 386.0
LYD2_k127_42089_5 NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000761 336.0
LYD2_k127_42089_6 - K07112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000008894 207.0
LYD2_k127_42089_7 Cytochrome C oxidase, cbb3-type, subunit III K08906 - - 0.0000000000000000000000000003727 118.0
LYD2_k127_42089_8 Cytochrome c K08738 - - 0.000000000000000000000003289 106.0
LYD2_k127_42089_9 Cytochrome C oxidase, cbb3-type, subunit III K08906 - - 0.000000000000000000000006017 107.0
LYD2_k127_4230945_0 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000001267 210.0
LYD2_k127_4230945_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000002174 197.0
LYD2_k127_4230945_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000005046 123.0
LYD2_k127_4230945_3 Uncharacterized conserved protein (DUF2304) - - - 0.0000000007749 64.0
LYD2_k127_424610_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 522.0
LYD2_k127_424610_1 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 412.0
LYD2_k127_424610_2 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005486 301.0
LYD2_k127_424610_3 acetyltransferase, isoleucine patch superfamily K03818 - - 0.000000000000000000000000000000000000000000000000000000000000000000001175 240.0
LYD2_k127_424610_4 Glycosyl transferase family 4 K02851 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0030145,GO:0034645,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0045229,GO:0046872,GO:0046914,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:1901576 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000002916 244.0
LYD2_k127_4258125_0 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007324 449.0
LYD2_k127_4258125_1 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000461 256.0
LYD2_k127_4258125_2 pfam ammecr1 K06990,K09141 - - 0.0000000000000000000000000000000000000000000001895 169.0
LYD2_k127_4258125_3 heat shock protein binding K03686 - - 0.0000000008082 71.0
LYD2_k127_428221_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008214 421.0
LYD2_k127_428221_1 Fumarate hydratase (Fumerase) K01676 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008988 286.0
LYD2_k127_428221_2 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001868 248.0
LYD2_k127_428221_3 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000008292 197.0
LYD2_k127_428221_4 AMP binding - - - 0.00000000000000000000000000000000000000001601 158.0
LYD2_k127_428221_5 PFAM Rhodanese domain protein - - - 0.00000008707 60.0
LYD2_k127_4293726_0 Aminotransferase class I and II K14261 - - 1.829e-213 671.0
LYD2_k127_4293726_1 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 604.0
LYD2_k127_4293726_10 Protein of unknown function DUF89 K09116 - - 0.0000000000000000000000000000000000000000000000000000000000000000005324 238.0
LYD2_k127_4293726_11 Protein of unknown function DUF116 K09729 - - 0.000000000000000000000000000000000000000000000000000000000000001041 222.0
LYD2_k127_4293726_12 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000169 209.0
LYD2_k127_4293726_13 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000001863 199.0
LYD2_k127_4293726_14 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.7.7.87 0.00000000000000000000000000000000000000002621 160.0
LYD2_k127_4293726_15 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000002689 156.0
LYD2_k127_4293726_16 Nitroreductase family - - - 0.000000000000000000000000000000009235 135.0
LYD2_k127_4293726_17 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000000007043 119.0
LYD2_k127_4293726_18 PFAM RNP-1 like RNA-binding protein - - - 0.000000000000000000000001245 107.0
LYD2_k127_4293726_19 TIGRFAM Polymorphic membrane protein, Chlamydia - - - 0.00000000000000001911 96.0
LYD2_k127_4293726_2 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009933 536.0
LYD2_k127_4293726_20 - - - - 0.000000000001305 70.0
LYD2_k127_4293726_21 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0001816 53.0
LYD2_k127_4293726_3 Homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 539.0
LYD2_k127_4293726_4 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 433.0
LYD2_k127_4293726_5 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 407.0
LYD2_k127_4293726_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005028 332.0
LYD2_k127_4293726_7 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 329.0
LYD2_k127_4293726_8 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 328.0
LYD2_k127_4293726_9 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003477 251.0
LYD2_k127_4327778_0 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009736 336.0
LYD2_k127_4327778_1 PFAM ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 301.0
LYD2_k127_4327778_2 COG0564 Pseudouridylate synthases, 23S RNA-specific K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000002436 270.0
LYD2_k127_4327778_3 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275,K02297 - 1.10.3.10,1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000006254 269.0
LYD2_k127_4327778_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008495,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000007427 244.0
LYD2_k127_4327778_5 Histidine kinase-, DNA gyrase B-, and HSP90-like - - - 0.000000000000000000000000000000000000000000000000001771 203.0
LYD2_k127_4327778_6 response regulator, receiver - - - 0.000000000000000000000000000001231 139.0
LYD2_k127_4327778_7 Smr domain - - - 0.00000000000000000000000000006391 119.0
LYD2_k127_4374124_0 Protein of unknown function (DUF1722) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 444.0
LYD2_k127_4374124_1 aminopeptidase N - - - 0.00000000000000000000000000000000000000000000000000000008069 208.0
LYD2_k127_4374124_2 - - - - 0.000000000000000000000000000000000000000000000001009 180.0
LYD2_k127_4374124_3 Membrane - - - 0.0000000000000001368 90.0
LYD2_k127_4374124_4 - - - - 0.0000000001046 63.0
LYD2_k127_4374124_5 Membrane - - - 0.0000000006291 61.0
LYD2_k127_4374124_6 electron transfer activity K05337,K17247 - - 0.00000003535 57.0
LYD2_k127_4374124_7 PFAM NAD-dependent epimerase dehydratase - - - 0.00006219 47.0
LYD2_k127_4374124_8 translation initiation factor activity K03646 - - 0.0007259 45.0
LYD2_k127_4387329_0 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 530.0
LYD2_k127_4387329_1 PFAM Type II secretion system protein E K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 437.0
LYD2_k127_4387329_2 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 301.0
LYD2_k127_4387329_3 PFAM Type II secretion system protein E K02454 - - 0.0000000000000000000000000000000000000000000000000002852 190.0
LYD2_k127_4387329_4 protein transport across the cell outer membrane K02452,K02463 - - 0.0000000000000000000000000000000000002518 151.0
LYD2_k127_4393_0 TIGRFAM Ammonium transporter K03320 - - 1.92e-222 697.0
LYD2_k127_4393_1 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002636 255.0
LYD2_k127_4393_2 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.0000000002361 63.0
LYD2_k127_4393_3 Amino acid permease - - - 0.000000003839 64.0
LYD2_k127_4412328_0 PFAM GCN5-related N-acetyltransferase K03824 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 306.0
LYD2_k127_4412328_1 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000004486 91.0
LYD2_k127_4412328_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000002275 95.0
LYD2_k127_44291_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009686 430.0
LYD2_k127_44291_1 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000003846 153.0
LYD2_k127_44291_2 Signal transduction histidine kinase, nitrogen specific K07708 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042578,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564 2.7.13.3 0.00000000000000000000000000001289 126.0
LYD2_k127_44291_3 Ribosomal protein S21 K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000005429 93.0
LYD2_k127_4447143_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.142e-275 862.0
LYD2_k127_4447143_1 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 3.77e-241 760.0
LYD2_k127_4447143_10 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000008532 63.0
LYD2_k127_4447143_2 Aminotransferase class-III K01845 - 5.4.3.8 1.154e-201 635.0
LYD2_k127_4447143_3 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 435.0
LYD2_k127_4447143_4 COG1194 A G-specific DNA glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 291.0
LYD2_k127_4447143_5 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000007308 233.0
LYD2_k127_4447143_6 PFAM Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000002648 231.0
LYD2_k127_4447143_7 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000006843 213.0
LYD2_k127_4447143_8 heat shock protein binding - - - 0.00000000000000000000000000000000002347 147.0
LYD2_k127_4447143_9 Stringent starvation protein B K09985 - - 0.00000000000000000000000000004098 121.0
LYD2_k127_4462093_0 Conserved hypothetical protein 698 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 386.0
LYD2_k127_4462093_1 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000003389 220.0
LYD2_k127_4462093_2 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000001493 168.0
LYD2_k127_4467580_0 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 390.0
LYD2_k127_4467580_1 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000001969 115.0
LYD2_k127_4467580_2 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K03769,K07533 - 5.2.1.8 0.00001673 56.0
LYD2_k127_447600_0 pfam abc K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 357.0
LYD2_k127_447600_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000009801 226.0
LYD2_k127_4479436_0 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003735 554.0
LYD2_k127_4479436_1 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 376.0
LYD2_k127_4479436_2 MlaC protein K07323 - - 0.000000000000000000000000000000000000000000000000000000000000000209 226.0
LYD2_k127_4479436_3 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000004345 211.0
LYD2_k127_4479436_4 Sigma-54 interaction domain K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000007507 214.0
LYD2_k127_4479436_5 - - - - 0.0000000000000000000000002181 112.0
LYD2_k127_448382_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 5.463e-274 854.0
LYD2_k127_448382_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000003389 159.0
LYD2_k127_4495887_0 Molydopterin dinucleotide binding domain K00123 - 1.17.1.9 0.0 1236.0
LYD2_k127_4495887_1 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 416.0
LYD2_k127_4495887_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003537 274.0
LYD2_k127_4495887_3 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000008483 166.0
LYD2_k127_4495887_4 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000003847 139.0
LYD2_k127_4495887_5 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000004418 133.0
LYD2_k127_4495887_6 PFAM DSBA oxidoreductase - - - 0.0007259 45.0
LYD2_k127_4502194_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 3.229e-295 915.0
LYD2_k127_4502194_1 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 3.095e-216 681.0
LYD2_k127_4502194_10 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000002503 88.0
LYD2_k127_4502194_11 SAM-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000009367 78.0
LYD2_k127_4502194_12 Sporulation and spore germination - - - 0.000000000000005689 82.0
LYD2_k127_4502194_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 355.0
LYD2_k127_4502194_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 313.0
LYD2_k127_4502194_4 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 307.0
LYD2_k127_4502194_5 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005796 258.0
LYD2_k127_4502194_6 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000001908 233.0
LYD2_k127_4502194_7 nuclease K00590,K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 2.1.1.113,3.1.31.1 0.0000000000000000000000000000000000000000001443 168.0
LYD2_k127_4502194_8 cyclic nucleotide binding K10914 - - 0.00000000000000000000000000000000000002634 151.0
LYD2_k127_4502194_9 N-Acetylmuramoyl-L-alanine amidase K01448,K02172 - 3.5.1.28 0.00000000000000000006295 103.0
LYD2_k127_4527187_0 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000001108 198.0
LYD2_k127_4527187_1 Biopolymer transport protein ExbD/TolR K03560 - - 0.00000000000000000000000000000000000001896 153.0
LYD2_k127_4527187_2 energy transducer activity K03646,K03832 - - 0.0000000000003204 78.0
LYD2_k127_4527187_3 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.000000001594 65.0
LYD2_k127_4530903_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 548.0
LYD2_k127_4530903_1 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 355.0
LYD2_k127_4530903_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000001446 254.0
LYD2_k127_4530903_3 GYD domain - - - 0.000000000000000000000000000000000009372 138.0
LYD2_k127_4530903_4 sulfur carrier activity K04085 - - 0.00000000000000000000000117 104.0
LYD2_k127_4530903_5 Phage capsid family - - - 0.000000000248 61.0
LYD2_k127_4530903_6 - - - - 0.0000007238 51.0
LYD2_k127_4535475_0 response to heat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 545.0
LYD2_k127_4535475_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 441.0
LYD2_k127_4535475_2 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 389.0
LYD2_k127_4535475_3 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 328.0
LYD2_k127_4535475_4 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000477 241.0
LYD2_k127_4535475_5 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000005254 217.0
LYD2_k127_4535475_6 isopentenyl-diphosphate delta-isomerase activity K00949,K01823 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.6.2,5.3.3.2 0.000000000000000000000000000000000000000000000000001649 191.0
LYD2_k127_4535475_7 - - - - 0.00000000000000000003109 94.0
LYD2_k127_4536993_0 Molecular chaperone. Has ATPase activity K04079 - - 6.197e-226 711.0
LYD2_k127_4536993_1 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 437.0
LYD2_k127_4536993_2 nucleoside-triphosphate diphosphatase activity K06287 - - 0.0000000000000000000000000000000000000000000000000005595 190.0
LYD2_k127_4539082_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 4.362e-203 642.0
LYD2_k127_4539082_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 595.0
LYD2_k127_4539082_10 GDP-mannose 4,6 dehydratase K19180 - 1.1.1.339 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005134 309.0
LYD2_k127_4539082_11 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 291.0
LYD2_k127_4539082_12 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003245 257.0
LYD2_k127_4539082_13 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000001183 214.0
LYD2_k127_4539082_14 Glycosyl transferase family 2 K12992 - - 0.00000000000000000000000000000000000000000000000009803 201.0
LYD2_k127_4539082_15 Methyltransferase domain - - - 0.000000000000000000000000000000000000001214 155.0
LYD2_k127_4539082_16 Glycosyltransferase - - - 0.000000000000000000000000000000000000002717 168.0
LYD2_k127_4539082_17 Glycosyltransferase like family 2 K12992 - - 0.00000000000000000000000000000000000008184 153.0
LYD2_k127_4539082_18 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.00000000000000000000000007473 112.0
LYD2_k127_4539082_19 Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000005611 107.0
LYD2_k127_4539082_2 PFAM outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 476.0
LYD2_k127_4539082_20 Ami_3 K01448 - 3.5.1.28 0.00000000000001381 81.0
LYD2_k127_4539082_21 ATP-independent chaperone mediated protein folding - - - 0.0001661 52.0
LYD2_k127_4539082_3 Glycosyl transferase family 2 K00721,K20534 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 437.0
LYD2_k127_4539082_4 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 442.0
LYD2_k127_4539082_5 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 417.0
LYD2_k127_4539082_6 Polysaccharide biosynthesis protein K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000741 407.0
LYD2_k127_4539082_7 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 379.0
LYD2_k127_4539082_8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007706 370.0
LYD2_k127_4539082_9 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 319.0
LYD2_k127_4542441_0 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 7.176e-213 666.0
LYD2_k127_4542441_1 K transport systems K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 381.0
LYD2_k127_4542441_2 Metalloenzyme superfamily K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 357.0
LYD2_k127_4542441_3 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 322.0
LYD2_k127_4542441_4 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000259 267.0
LYD2_k127_4542441_5 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000000000000005607 154.0
LYD2_k127_4542441_6 ThiS family K03636 - - 0.00000000000000000000000000000000113 132.0
LYD2_k127_4542441_7 NIL - - - 0.000000000000000000000000003705 114.0
LYD2_k127_4542441_8 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000000000000001969 101.0
LYD2_k127_4542441_9 LemA family K03744 - - 0.0000002624 57.0
LYD2_k127_4545408_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1164.0
LYD2_k127_4545408_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009338 460.0
LYD2_k127_4545408_10 Stage II sporulation protein M - - - 0.0000000000000000000000000004019 121.0
LYD2_k127_4545408_11 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000000000006442 104.0
LYD2_k127_4545408_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 446.0
LYD2_k127_4545408_3 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 370.0
LYD2_k127_4545408_4 Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 351.0
LYD2_k127_4545408_5 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 320.0
LYD2_k127_4545408_6 MazG nucleotide pyrophosphohydrolase domain K02428,K02499,K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66,3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 295.0
LYD2_k127_4545408_7 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000003978 232.0
LYD2_k127_4545408_8 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000003903 174.0
LYD2_k127_4545408_9 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000000000000000004625 165.0
LYD2_k127_454892_0 5-formyltetrahydrofolate cyclo-ligase activity K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 604.0
LYD2_k127_454892_1 AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 441.0
LYD2_k127_454892_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009956 309.0
LYD2_k127_454892_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 309.0
LYD2_k127_454892_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000008136 265.0
LYD2_k127_454892_5 Transglutaminase-like superfamily K22452 - 2.3.2.13 0.0000000000000000000000000000000001684 143.0
LYD2_k127_454892_6 Polymer-forming cytoskeletal - - - 0.000000000000000000000000007197 113.0
LYD2_k127_4561875_0 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 341.0
LYD2_k127_4561875_1 - - - - 0.00000000000000001867 84.0
LYD2_k127_4561875_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system - - - 0.000000000000415 70.0
LYD2_k127_4561875_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000001449 50.0
LYD2_k127_4599257_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1330.0
LYD2_k127_4599257_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 3.967e-195 617.0
LYD2_k127_4599552_0 metal-dependent phosphohydrolase HD - - - 2.992e-207 664.0
LYD2_k127_4599552_1 type IV pilus assembly PilZ - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 554.0
LYD2_k127_4599552_2 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 432.0
LYD2_k127_4599552_3 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 289.0
LYD2_k127_4609060_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 319.0
LYD2_k127_4609060_1 Belongs to the peptidase M48B family - - - 0.000000000000000000000000000000000000000000003997 168.0
LYD2_k127_4609060_3 Acetyltransferase (GNAT) domain K00663 - 2.3.1.82 0.00003376 53.0
LYD2_k127_461826_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 326.0
LYD2_k127_461826_1 Histidine kinase K07641,K07642,K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001708 274.0
LYD2_k127_461826_10 Evidence 5 No homology to any previously reported sequences - - - 0.00004371 53.0
LYD2_k127_461826_2 phosphatidate phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001931 264.0
LYD2_k127_461826_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004214 247.0
LYD2_k127_461826_4 MraZ protein, putative antitoxin-like K03925 - - 0.00000000000000000000000000000000000000000000007078 173.0
LYD2_k127_461826_5 Belongs to the UPF0235 family K09131 - - 0.000000000000004477 78.0
LYD2_k127_461826_6 RNA-binding protein containing a PIN domain K06962 - - 0.00000000000001773 77.0
LYD2_k127_461826_7 RNA-binding protein containing a PIN domain K06962 - - 0.00000000001001 66.0
LYD2_k127_461826_8 Chemotaxis sensory transducer K03406 - - 0.00000000001197 68.0
LYD2_k127_4621511_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 588.0
LYD2_k127_4621511_1 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000003575 201.0
LYD2_k127_4621511_2 protein tyrosine phosphatase activity K01104,K19302 - 3.1.3.48,3.6.1.27 0.000000000000000000000000000000000000000000000000001113 190.0
LYD2_k127_4621511_3 glycogen (starch) synthase activity - - - 0.00000000000000000000000000000000000000000000000009585 192.0
LYD2_k127_4621511_4 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000006156 174.0
LYD2_k127_4621511_5 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000008514 98.0
LYD2_k127_4621511_6 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000002892 103.0
LYD2_k127_4628014_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 571.0
LYD2_k127_4628014_1 PFAM binding-protein-dependent transport systems inner membrane component K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 428.0
LYD2_k127_4628014_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007253 426.0
LYD2_k127_4628014_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 413.0
LYD2_k127_4628014_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 387.0
LYD2_k127_4628014_5 Mur ligase, middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006178 324.0
LYD2_k127_4628014_6 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 288.0
LYD2_k127_4628014_7 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001873 285.0
LYD2_k127_4628014_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001039 266.0
LYD2_k127_4628014_9 PBP superfamily domain K02040 - - 0.000000000000008379 74.0
LYD2_k127_4631469_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 3.312e-217 684.0
LYD2_k127_4631469_1 ABC1 family K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 578.0
LYD2_k127_4631469_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.00000000000000000000000000000000003057 140.0
LYD2_k127_4631469_3 protein-glutamate methylesterase activity K00575,K03412,K03413,K07719 - 2.1.1.80,3.1.1.61,3.5.1.44 0.000000000000000008302 91.0
LYD2_k127_4631469_4 - - - - 0.000000000000001298 80.0
LYD2_k127_4643178_0 Domains HAMP, HisKA, HATPase_c, REC K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 380.0
LYD2_k127_4643178_1 PFAM Radical SAM domain protein K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 338.0
LYD2_k127_4643178_2 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000438 204.0
LYD2_k127_4645826_0 Aconitase C-terminal domain K01681 - 4.2.1.3 4.001e-277 862.0
LYD2_k127_4645826_2 Belongs to the 'phage' integrase family - - - 0.0003277 47.0
LYD2_k127_465611_0 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 477.0
LYD2_k127_465611_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005759 407.0
LYD2_k127_465611_2 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 342.0
LYD2_k127_465611_3 Protein of unknown function (DUF3641) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 336.0
LYD2_k127_465611_5 Membrane - - - 0.00009573 49.0
LYD2_k127_4660474_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005523 514.0
LYD2_k127_4678822_0 Belongs to the peptidase M16 family K07263 - - 0.0 1017.0
LYD2_k127_4678822_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 421.0
LYD2_k127_4678822_10 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000001565 133.0
LYD2_k127_4678822_11 PFAM Rieske 2Fe-2S K02636 - 1.10.9.1 0.0000000000000000000000000001983 119.0
LYD2_k127_4678822_12 - - - - 0.00000000008027 65.0
LYD2_k127_4678822_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 388.0
LYD2_k127_4678822_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007105 333.0
LYD2_k127_4678822_4 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001531 266.0
LYD2_k127_4678822_5 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000004547 226.0
LYD2_k127_4678822_6 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000002627 222.0
LYD2_k127_4678822_7 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000003008 223.0
LYD2_k127_4678822_8 Aminoacyl-tRNA editing domain K19055 - - 0.00000000000000000000000000000000000000000000000001421 185.0
LYD2_k127_4678822_9 organic phosphonate transport K02044 - - 0.000000000000000000000000000000000000009582 157.0
LYD2_k127_4706167_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 602.0
LYD2_k127_4706167_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 437.0
LYD2_k127_4706167_2 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000005039 256.0
LYD2_k127_4706167_3 Signal transduction histidine kinase, nitrogen specific, NtrB K07708 - 2.7.13.3 0.0000000000000000000000000000000000007324 149.0
LYD2_k127_4706167_4 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000002024 140.0
LYD2_k127_4706167_5 Amidohydrolase family K06015 - 3.5.1.81 0.0000000000000000000000001899 108.0
LYD2_k127_4712953_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL-like protein K07303 - 1.3.99.16 2.44e-250 793.0
LYD2_k127_4712953_1 Belongs to the sulfate adenylyltransferase family K00958,K13811 - 2.7.1.25,2.7.7.4 9.149e-205 643.0
LYD2_k127_4712953_10 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000001776 229.0
LYD2_k127_4712953_11 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000000000000000000000000572 230.0
LYD2_k127_4712953_12 HD domain K06950 - - 0.00000000000000000000000000000000000000000000000000002076 195.0
LYD2_k127_4712953_13 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000000000001389 186.0
LYD2_k127_4712953_14 DEAD DEAH box helicase domain protein K03654 - 3.6.4.12 0.000000000000000000000005773 109.0
LYD2_k127_4712953_15 Uncharacterized ACR, COG1399 K07040 - - 0.00003926 48.0
LYD2_k127_4712953_2 Mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 407.0
LYD2_k127_4712953_3 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 345.0
LYD2_k127_4712953_4 reductase, alpha subunit K00394 - 1.8.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 312.0
LYD2_k127_4712953_5 PFAM DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005754 281.0
LYD2_k127_4712953_6 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009255 245.0
LYD2_k127_4712953_7 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000004107 232.0
LYD2_k127_4712953_8 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000002943 234.0
LYD2_k127_4712953_9 reductase, beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
LYD2_k127_4738770_0 CO dehydrogenase K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 297.0
LYD2_k127_4738770_1 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006076 284.0
LYD2_k127_4738770_2 Pfam:TPM K08988 - - 0.000000000000000000000000000000000000000000000000000000000003228 221.0
LYD2_k127_4738770_3 PFAM LemA family protein K03744 - - 0.000000000000000000000000000000000000000000101 160.0
LYD2_k127_4738770_4 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000001797 148.0
LYD2_k127_4738770_5 Gaf domain K02488 - 2.7.7.65 0.000000000000000000000000001112 123.0
LYD2_k127_4758894_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 514.0
LYD2_k127_4758894_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 359.0
LYD2_k127_4758894_2 Protein of unknown function DUF86 - - - 0.000000000000000000000000000000006082 131.0
LYD2_k127_4758894_3 nucleotidyltransferase activity K07076 - - 0.000000000000000000000000000008882 124.0
LYD2_k127_4758894_4 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.00000000000000000006787 89.0
LYD2_k127_4761448_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 547.0
LYD2_k127_4761448_1 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 387.0
LYD2_k127_4761448_2 ThiF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008287 376.0
LYD2_k127_4761448_3 JAB/MPN domain K21140 - 3.13.1.6 0.0000000000000000000000002472 109.0
LYD2_k127_4761448_4 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000002559 87.0
LYD2_k127_4801084_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012,K00066,K02472,K02474,K13015 - 1.1.1.132,1.1.1.136,1.1.1.22,1.1.1.336 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 467.0
LYD2_k127_4801084_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 323.0
LYD2_k127_4801084_2 COGs COG0463 Glycosyltransferase involved in cell wall biogenesis K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002744 276.0
LYD2_k127_4801084_3 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001492 252.0
LYD2_k127_4801084_4 PFAM AAA ATPase central domain protein K07478 - - 0.0000000000000000000000000000000000000000000000000003062 188.0
LYD2_k127_4801084_5 PFAM Carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000000001131 138.0
LYD2_k127_4801084_6 - - - - 0.0000000000000000000000002679 109.0
LYD2_k127_4801084_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000009227 93.0
LYD2_k127_4801084_8 C-terminal four TMM region of protein-O-mannosyltransferase - - - 0.0000000000003734 82.0
LYD2_k127_4805557_0 SMART Elongator protein 3 MiaB NifB - - - 1.553e-216 681.0
LYD2_k127_4805557_1 SEFIR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008531 549.0
LYD2_k127_4805557_10 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 334.0
LYD2_k127_4805557_11 Putative zinc- or iron-chelating domain - - - 0.00000000000000000000000000000000000000000000000000000000000001403 222.0
LYD2_k127_4805557_12 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000008851 175.0
LYD2_k127_4805557_13 GDP-mannose 4,6 dehydratase - - - 0.00000000000000000000000000000000000000000001799 164.0
LYD2_k127_4805557_14 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000000000006086 103.0
LYD2_k127_4805557_15 Universal stress protein family - - - 0.000000000002311 73.0
LYD2_k127_4805557_16 exodeoxyribonuclease VII activity K03602 - 3.1.11.6 0.000000000031 66.0
LYD2_k127_4805557_17 - - - - 0.0000005244 56.0
LYD2_k127_4805557_18 - - - - 0.000001381 54.0
LYD2_k127_4805557_2 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 492.0
LYD2_k127_4805557_3 Sulphur transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 433.0
LYD2_k127_4805557_4 PFAM Radical SAM K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 411.0
LYD2_k127_4805557_5 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006813 381.0
LYD2_k127_4805557_7 PFAM Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 347.0
LYD2_k127_4805557_8 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 330.0
LYD2_k127_4805557_9 SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 322.0
LYD2_k127_4818833_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 4.745e-227 713.0
LYD2_k127_4818833_1 Evidence 2b Function of strongly homologous gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 542.0
LYD2_k127_4818833_10 arabinan catabolic process K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000001159 175.0
LYD2_k127_4818833_11 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000001008 160.0
LYD2_k127_4818833_12 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000008349 136.0
LYD2_k127_4818833_13 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000001215 98.0
LYD2_k127_4818833_14 deoxyhypusine monooxygenase activity K05384,K05386 - - 0.0000000000000000001185 93.0
LYD2_k127_4818833_15 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000007335 54.0
LYD2_k127_4818833_16 Zn-ribbon protein possibly nucleic acid-binding - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00002875 55.0
LYD2_k127_4818833_17 Tetratricopeptide repeat protein - - - 0.0002198 51.0
LYD2_k127_4818833_2 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 524.0
LYD2_k127_4818833_3 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 525.0
LYD2_k127_4818833_4 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004 478.0
LYD2_k127_4818833_5 Lysin motif K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 367.0
LYD2_k127_4818833_6 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 332.0
LYD2_k127_4818833_7 zinc ion binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006648 271.0
LYD2_k127_4818833_8 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000007707 202.0
LYD2_k127_4818833_9 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.0000000000000000000000000000000000000000000000000000001347 202.0
LYD2_k127_4822136_0 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002468 259.0
LYD2_k127_4822136_1 - - - - 0.00000000000000000000000000000000000000000000000009589 196.0
LYD2_k127_4822136_2 Cytochrome c - - - 0.0000000000000000001445 103.0
LYD2_k127_4838690_0 Sulfotransferase family - - - 0.000000000000000000000000000000000000000004201 165.0
LYD2_k127_4838690_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000005336 144.0
LYD2_k127_4838690_3 GlcNAc-PI de-N-acetylase K01463,K20444 - - 0.0000000000000002949 84.0
LYD2_k127_4838690_4 Transport permease protein K09690,K09692 - - 0.000000001482 61.0
LYD2_k127_4858021_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 312.0
LYD2_k127_4858021_1 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000001058 243.0
LYD2_k127_4858021_2 Protein of unknown function (DUF1460) - - - 0.00000000000000000000000000000000000000000000000000000000000000008369 228.0
LYD2_k127_4858021_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000003681 200.0
LYD2_k127_4858021_4 - - - - 0.000000000000000000000001387 111.0
LYD2_k127_4879973_0 PLD-like domain K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007637 278.0
LYD2_k127_4879973_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000005317 271.0
LYD2_k127_4879973_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001428 249.0
LYD2_k127_4879973_3 SPTR Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000000000000000000000000004426 177.0
LYD2_k127_4879973_4 PFAM Mammalian cell entry related K02067 - - 0.0000000000000007847 88.0
LYD2_k127_4879973_5 ABC-type transport auxiliary lipoprotein component K18480 - - 0.0000249 54.0
LYD2_k127_494910_0 PFAM magnesium chelatase ChlI subunit K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004771 571.0
LYD2_k127_494910_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 315.0
LYD2_k127_494910_3 Regulatory protein, FmdB family - - - 0.000000000000000002533 86.0
LYD2_k127_4958482_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 472.0
LYD2_k127_4958482_1 PFAM ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004765 414.0
LYD2_k127_4958482_2 Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters K03557 GO:0000018,GO:0000229,GO:0000785,GO:0000786,GO:0000787,GO:0000789,GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001121,GO:0001130,GO:0001131,GO:0001140,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016032,GO:0016070,GO:0018130,GO:0019042,GO:0019045,GO:0019046,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031421,GO:0032359,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044374,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044815,GO:0045892,GO:0045893,GO:0045911,GO:0045934,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.0003059 46.0
LYD2_k127_4988177_0 Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 408.0
LYD2_k127_4988177_1 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000000000000000000000004882 227.0
LYD2_k127_4988177_2 PFAM metal-dependent phosphohydrolase, HD sub domain K06950 - - 0.0000000000000000000000000000000000000000000000000000000000000006926 223.0
LYD2_k127_4988177_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000008372 108.0
LYD2_k127_4995304_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007009 549.0
LYD2_k127_4995304_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 365.0
LYD2_k127_4995304_2 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000007935 166.0
LYD2_k127_4995304_3 oligosaccharyl transferase activity - - - 0.000000000001043 74.0
LYD2_k127_4995304_4 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 - 5.2.1.8 0.00001738 55.0
LYD2_k127_5023709_0 FAD linked oxidase - - - 4.148e-255 792.0
LYD2_k127_5023709_1 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 572.0
LYD2_k127_5023709_2 Sigma-54 interaction domain K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 471.0
LYD2_k127_5023709_3 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008454 370.0
LYD2_k127_5023709_4 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001367 285.0
LYD2_k127_5023709_5 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006444 231.0
LYD2_k127_5023709_6 Nitroreductase family - - - 0.00000000000001558 74.0
LYD2_k127_5030562_0 Yip1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002164 244.0
LYD2_k127_5030562_1 Protein of unknown function (DUF815) K06923 - - 0.0000000000000000000000000000000000000000000005358 170.0
LYD2_k127_5030562_2 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000007557 105.0
LYD2_k127_5030562_3 ATPase, AAA K06923 - - 0.000000000000000000005928 98.0
LYD2_k127_5030562_4 Aminotransferase class I and II K04720 - 4.1.1.81 0.00000000000000006959 88.0
LYD2_k127_5032194_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 3.05e-213 672.0
LYD2_k127_5032194_1 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 299.0
LYD2_k127_5037695_0 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005453 304.0
LYD2_k127_5037695_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 308.0
LYD2_k127_5037695_2 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000009072 221.0
LYD2_k127_5037695_3 PFAM CBS domain - - - 0.000000000000000000000000000001319 129.0
LYD2_k127_5037695_4 SNARE associated Golgi protein - - - 0.0000000000000000000000000000421 118.0
LYD2_k127_5037695_5 Putative regulatory protein - - - 0.0000000000000000000000566 101.0
LYD2_k127_5037695_6 PFAM Chromate transporter K07240 - - 0.00000000000000000000005779 100.0
LYD2_k127_5037695_7 NAD(P)H-binding - - - 0.0000000000000000004492 87.0
LYD2_k127_5045799_0 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 369.0
LYD2_k127_5045799_1 Transposase IS116/IS110/IS902 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 340.0
LYD2_k127_5045799_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000009217 250.0
LYD2_k127_5045799_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000005852 186.0
LYD2_k127_5045799_4 Heptaprenyl diphosphate synthase component I K00805 - 2.5.1.30 0.00000000000000000000000000000000006443 141.0
LYD2_k127_5045799_5 LysM domain K01449,K19223 - 3.5.1.28 0.0000000000000000000000000000000004653 143.0
LYD2_k127_5045799_6 Domains HAMP, HisKA, HATPase_c, REC K02030 - - 0.0000000000000000000000000000004846 128.0
LYD2_k127_5045799_7 PFAM Rubredoxin-type Fe(Cys)4 protein - GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0017144,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0055114,GO:0072592 - 0.000000000000000000000001011 104.0
LYD2_k127_5045799_8 NusG domain II K00805 - 2.5.1.30 0.000000000000000001203 90.0
LYD2_k127_5045799_9 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000000000008231 84.0
LYD2_k127_5052671_0 CHASE K02488,K21009 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000002865 211.0
LYD2_k127_5052671_1 AMP binding K03499,K06149 - - 0.000000000000001012 79.0
LYD2_k127_5052671_2 Belongs to the peptidase S8 family K14645 GO:0005575,GO:0005576 - 0.00000001864 63.0
LYD2_k127_508716_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007625 364.0
LYD2_k127_508716_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 364.0
LYD2_k127_508716_2 Archaeal transcriptional regulator TrmB - - - 0.00000000000000000000000000000000000000001124 164.0
LYD2_k127_508716_3 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000003452 155.0
LYD2_k127_5098037_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 1.432e-194 613.0
LYD2_k127_5098037_1 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000232 254.0
LYD2_k127_5098037_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000006186 239.0
LYD2_k127_5098037_3 Lumazine binding domain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000003785 202.0
LYD2_k127_5098037_4 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000001818 125.0
LYD2_k127_5098037_5 GTP-binding protein LepA C-terminus K03596 - - 0.000000004777 57.0
LYD2_k127_5111916_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 576.0
LYD2_k127_5111916_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 416.0
LYD2_k127_5111916_2 pfkB family carbohydrate kinase K00847,K00852 - 2.7.1.15,2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004817 331.0
LYD2_k127_5111916_3 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 320.0
LYD2_k127_5111916_4 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006984 304.0
LYD2_k127_5111916_5 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001117 264.0
LYD2_k127_5111916_6 Major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000006496 237.0
LYD2_k127_5111916_7 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000002425 166.0
LYD2_k127_5111916_8 - - - - 0.00000000000000000003964 93.0
LYD2_k127_5111916_9 protein secretion K03116,K03117 - - 0.0000000004979 63.0
LYD2_k127_5144882_0 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007711 494.0
LYD2_k127_5144882_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 476.0
LYD2_k127_5144882_2 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009941 387.0
LYD2_k127_5144882_3 geranylgeranyl reductase activity K14266 - 1.14.19.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 389.0
LYD2_k127_5144882_4 cyclic nucleotide binding K00384,K01420 - 1.8.1.9 0.00000000000000000000000000000004846 127.0
LYD2_k127_5144882_5 Belongs to the HesB IscA family K15724 - - 0.0000000000000000000000000000001798 126.0
LYD2_k127_5144882_6 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000001991 111.0
LYD2_k127_5144882_7 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000002898 101.0
LYD2_k127_5144882_8 serine threonine protein kinase K12132 - 2.7.11.1 0.000000001838 70.0
LYD2_k127_5144882_9 - - - - 0.000000003272 62.0
LYD2_k127_5155488_0 proline betaine transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 539.0
LYD2_k127_5155488_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 482.0
LYD2_k127_5155488_10 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000008699 154.0
LYD2_k127_5155488_11 PFAM Dinitrogenase iron-molybdenum cofactor biosynthesis protein - - - 0.0000000000000000000000000000000000000001449 156.0
LYD2_k127_5155488_12 Protein of unknown function DUF134 - - - 0.0000000000000000000000000007615 115.0
LYD2_k127_5155488_13 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000006703 112.0
LYD2_k127_5155488_14 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000006133 96.0
LYD2_k127_5155488_15 Regulatory protein, FmdB family - - - 0.000000000000000009525 85.0
LYD2_k127_5155488_16 Cache domain K02482 - 2.7.13.3 0.0001209 45.0
LYD2_k127_5155488_17 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.0006441 47.0
LYD2_k127_5155488_2 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 424.0
LYD2_k127_5155488_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 357.0
LYD2_k127_5155488_4 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 349.0
LYD2_k127_5155488_5 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 319.0
LYD2_k127_5155488_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 306.0
LYD2_k127_5155488_7 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003,K05685 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 298.0
LYD2_k127_5155488_8 - - - - 0.00000000000000000000000000000000000000000000000000000000002071 211.0
LYD2_k127_5155488_9 Protein involved in outer membrane biogenesis - - - 0.000000000000000000000000000000000000000000003237 184.0
LYD2_k127_5156901_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 327.0
LYD2_k127_5156901_1 ABC transporter K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000007474 241.0
LYD2_k127_5156901_2 PFAM periplasmic solute binding protein K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000001596 231.0
LYD2_k127_5156901_3 ABC 3 transport family K09816,K09819 - - 0.000000000000000000000000000000000000000000000000000000001486 209.0
LYD2_k127_5156901_4 Domain of unknown function (DUF1992) - - - 0.00000000000000000000000000000000003086 137.0
LYD2_k127_5208995_0 Peptidase U62 modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 538.0
LYD2_k127_5208995_1 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 317.0
LYD2_k127_5208995_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 317.0
LYD2_k127_5208995_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000007398 260.0
LYD2_k127_5208995_4 nucleotidyltransferase activity K07075 - - 0.000000000000000000000001022 111.0
LYD2_k127_5208995_5 AP endonuclease family 2 K01151 - 3.1.21.2 0.00001502 48.0
LYD2_k127_5224048_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 385.0
LYD2_k127_5224048_1 HD domain - - - 0.00000000000000000000000000000000000000000001153 176.0
LYD2_k127_5233055_0 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 576.0
LYD2_k127_5233055_1 Histone deacetylase domain K04768 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008402 407.0
LYD2_k127_5233055_2 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000008357 235.0
LYD2_k127_5233055_3 gas vesicle protein - - - 0.0000000000000000001047 93.0
LYD2_k127_5233055_4 SMART Elongator protein 3 MiaB NifB - - - 0.00003657 46.0
LYD2_k127_5252286_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 5.536e-262 820.0
LYD2_k127_5252286_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 510.0
LYD2_k127_5252286_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 319.0
LYD2_k127_5252286_3 PFAM Fatty acid hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003857 271.0
LYD2_k127_5256095_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 2.697e-214 671.0
LYD2_k127_5256095_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009849 329.0
LYD2_k127_5256095_2 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.00000000000000000000000000000000000000000000000000001019 199.0
LYD2_k127_5256095_3 Domain of unknown function (DUF202) K00389 - - 0.00000000000000000000000000000000000000000136 160.0
LYD2_k127_5256095_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000003027 103.0
LYD2_k127_5256095_5 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000007365 81.0
LYD2_k127_5256095_6 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0031123,GO:0031404,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.000000000003296 72.0
LYD2_k127_5261097_0 PFAM Radical SAM K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 484.0
LYD2_k127_5261097_1 Glycoprotease family K01409,K14742 GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000000005676 190.0
LYD2_k127_5261097_2 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000000000008066 128.0
LYD2_k127_5261097_3 Transmembrane secretion effector - - - 0.0000000000000000000007638 98.0
LYD2_k127_5261097_4 Regulatory protein, FmdB family - - - 0.000000008634 58.0
LYD2_k127_5292430_0 Belongs to the peptidase S8 family - - - 2.547e-202 645.0
LYD2_k127_5292430_1 PEP-CTERM motif - - - 0.000000000000000000000000003562 113.0
LYD2_k127_5292430_2 PFAM UBA THIF-type NAD FAD binding protein - - - 0.0000000000002228 70.0
LYD2_k127_5292430_3 PFAM UBA THIF-type NAD FAD binding protein - - - 0.0000003872 55.0
LYD2_k127_5295752_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 528.0
LYD2_k127_5295752_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 448.0
LYD2_k127_5295752_10 PAS domain containing protein K03406,K13924,K14986 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000003768 124.0
LYD2_k127_5295752_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 311.0
LYD2_k127_5295752_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005663 268.0
LYD2_k127_5295752_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000002195 253.0
LYD2_k127_5295752_5 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000004587 222.0
LYD2_k127_5295752_6 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000004263 220.0
LYD2_k127_5295752_7 VanZ like family - - - 0.0000000000000000000000000000000000000002542 154.0
LYD2_k127_5295752_8 Sigma factor PP2C-like phosphatases - - - 0.0000000000000000000000000000000000005959 155.0
LYD2_k127_5295752_9 diguanylate cyclase - - - 0.00000000000000000000000000000001121 146.0
LYD2_k127_5322753_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.828e-295 929.0
LYD2_k127_5322753_1 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 4.595e-272 863.0
LYD2_k127_5322753_10 manually curated - - - 0.000000000000003285 78.0
LYD2_k127_5322753_11 helix_turn_helix, Lux Regulon - - - 0.0000001373 60.0
LYD2_k127_5322753_2 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 417.0
LYD2_k127_5322753_3 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 349.0
LYD2_k127_5322753_4 Cytochrome b5-like Heme/Steroid binding domain K07245,K14166 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000816 299.0
LYD2_k127_5322753_5 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002376 282.0
LYD2_k127_5322753_6 PFAM ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009731 229.0
LYD2_k127_5322753_7 Domain of unknown function (DUF3842) - - - 0.0000000000000000000000000000000000000000000000004363 179.0
LYD2_k127_5322753_8 Predicted RNA-binding protein - - - 0.00000000000000000001973 91.0
LYD2_k127_5322753_9 PFAM PHP domain protein K01104 - 3.1.3.48 0.0000000000000000005508 89.0
LYD2_k127_5338381_0 fatty acid beta-oxidation using acyl-CoA dehydrogenase K03522,K22432 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 1.3.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005644 496.0
LYD2_k127_5338381_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 332.0
LYD2_k127_5338381_2 PFAM Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 313.0
LYD2_k127_5351512_0 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009251 548.0
LYD2_k127_5351512_1 General secretory system II, protein E domain protein K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 479.0
LYD2_k127_5351512_2 Protein of unknown function (DUF1460) - - - 0.0000000000000000000008686 96.0
LYD2_k127_5373979_0 Domain of unknown function (DUF3463) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 395.0
LYD2_k127_5373979_1 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 301.0
LYD2_k127_5373979_2 TIGRFAM hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009801 282.0
LYD2_k127_5373979_3 Carotenoid biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002066 262.0
LYD2_k127_5373979_4 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively K01243 - 3.2.2.9 0.000000000832 68.0
LYD2_k127_5373979_5 OmpA family K02557 - - 0.00006771 53.0
LYD2_k127_5401339_0 AMP-binding enzyme C-terminal domain K05939 - 2.3.1.40,6.2.1.20 1.451e-209 662.0
LYD2_k127_5401339_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 4.489e-202 646.0
LYD2_k127_5401339_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 407.0
LYD2_k127_5401339_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 355.0
LYD2_k127_5401339_4 helix_turn_helix, cAMP Regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000006718 205.0
LYD2_k127_5401339_5 - - - - 0.0000000000003665 72.0
LYD2_k127_5401339_7 Na+ dependent nucleoside transporter C-terminus K03317 - - 0.000000006735 63.0
LYD2_k127_5408448_0 sugar transferase K00996 - 2.7.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 391.0
LYD2_k127_5408448_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 353.0
LYD2_k127_5408448_2 transferase activity, transferring glycosyl groups K00745,K12988,K18704 - 2.4.1.166,2.7.8.14,2.7.8.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007383 310.0
LYD2_k127_5408448_3 Histidine biosynthesis protein K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007916 284.0
LYD2_k127_5408448_4 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000006745 233.0
LYD2_k127_5408448_5 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000003244 227.0
LYD2_k127_5408448_6 Methyltransferase domain - - - 0.000006057 49.0
LYD2_k127_5411888_0 Phospholipase, patatin family K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005009 279.0
LYD2_k127_5411888_1 Protein of unknown function (DUF3617) - - - 0.000000000000000000000000000000000001081 143.0
LYD2_k127_5411888_2 Cytochrome c554 and c-prime - - - 0.0000000001545 68.0
LYD2_k127_5412054_0 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 548.0
LYD2_k127_5412054_1 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 529.0
LYD2_k127_5412054_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 454.0
LYD2_k127_5412054_3 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 335.0
LYD2_k127_5412054_4 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 331.0
LYD2_k127_5412054_5 SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000001189 212.0
LYD2_k127_5412054_6 OsmC-like protein K04063 - - 0.00000000000000000000000000000000000000000000000001608 184.0
LYD2_k127_5412054_7 Universal stress protein family - - - 0.00000000000001462 85.0
LYD2_k127_5418795_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.644e-286 900.0
LYD2_k127_5418795_1 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002071 271.0
LYD2_k127_5418795_2 phosphoesterase RecJ domain protein K06881 GO:0008150,GO:0040007 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000004004 254.0
LYD2_k127_5418795_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000004965 234.0
LYD2_k127_5418795_4 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000008362 125.0
LYD2_k127_5418795_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000001375 106.0
LYD2_k127_5418795_6 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000001014 89.0
LYD2_k127_5418795_7 Protein of unknown function (DUF721) - - - 0.0007884 49.0
LYD2_k127_5426694_0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005499 329.0
LYD2_k127_5426694_1 TGS domain K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 297.0
LYD2_k127_5426694_2 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000000074 136.0
LYD2_k127_5426694_4 Protein of unknown function (DUF1264) - - - 0.000000000000005789 82.0
LYD2_k127_5426694_5 Histone deacetylase domain K04768 - - 0.0000002493 52.0
LYD2_k127_5426694_6 part of a sulfur-relay system K11179 - - 0.00002533 48.0
LYD2_k127_5426694_7 - - - - 0.00006941 51.0
LYD2_k127_5436410_0 TonB dependent receptor K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 480.0
LYD2_k127_5436410_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000006292 217.0
LYD2_k127_5436410_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000001083 134.0
LYD2_k127_544166_0 Protein of unknown function (DUF3443) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 424.0
LYD2_k127_544166_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 319.0
LYD2_k127_544166_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003973 289.0
LYD2_k127_544166_3 Protein of unknown function (DUF2844) - - - 0.00000000000000000000000000000000000000000002713 165.0
LYD2_k127_544166_4 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000001266 170.0
LYD2_k127_544166_5 PFAM Cold-shock protein DNA-binding K03704 - - 0.000000000000000000000002585 104.0
LYD2_k127_544166_6 - - - - 0.0000000000003655 72.0
LYD2_k127_5491136_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 565.0
LYD2_k127_5491136_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 460.0
LYD2_k127_5491136_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 419.0
LYD2_k127_5491136_3 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009543 400.0
LYD2_k127_5491136_4 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 396.0
LYD2_k127_5491136_5 Cell wall formation K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 380.0
LYD2_k127_5491136_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 368.0
LYD2_k127_5491136_7 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000002073 224.0
LYD2_k127_5491136_8 cell division protein FtsQ K03589 - - 0.0000000000002717 79.0
LYD2_k127_5536412_0 Sigma-54 interaction domain - - - 2.259e-242 760.0
LYD2_k127_5536412_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007445 372.0
LYD2_k127_5549412_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 572.0
LYD2_k127_5549412_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 505.0
LYD2_k127_5549412_2 response regulator K13599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000976 378.0
LYD2_k127_5549412_3 Exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003273 280.0
LYD2_k127_5549412_4 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000003688 201.0
LYD2_k127_5549412_5 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000001233 199.0
LYD2_k127_5549412_6 Protein of unknown function (DUF498/DUF598) - - - 0.00000001269 56.0
LYD2_k127_554993_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 421.0
LYD2_k127_554993_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000003882 259.0
LYD2_k127_554993_2 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000002427 203.0
LYD2_k127_554993_3 SMART PDZ DHR GLGF domain protein K11749 - - 0.0000000000000000000000001865 107.0
LYD2_k127_554993_4 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000002526 86.0
LYD2_k127_554993_5 curli production assembly transport component CsgG - - - 0.000002817 60.0
LYD2_k127_5551988_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001332 263.0
LYD2_k127_5551988_1 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K00564,K15460 - 2.1.1.172,2.1.1.223 0.000000000000000000000000000000000000000000000000000000000000000004753 233.0
LYD2_k127_5551988_2 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000001568 198.0
LYD2_k127_5551988_3 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000006436 192.0
LYD2_k127_5551988_4 Tetratricopeptide repeat K07452 - - 0.000000003589 66.0
LYD2_k127_5554426_0 O-methyltransferase activity - - - 2.316e-209 670.0
LYD2_k127_5554426_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 5.315e-204 644.0
LYD2_k127_5554426_10 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009582 252.0
LYD2_k127_5554426_11 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005227 256.0
LYD2_k127_5554426_12 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001013 244.0
LYD2_k127_5554426_13 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000000000001843 223.0
LYD2_k127_5554426_14 - - - - 0.00000000000000000000000000000000000000000000000000000000007702 211.0
LYD2_k127_5554426_15 lyase activity - - - 0.0000000000000000000000000000000000000000000000000000000008495 207.0
LYD2_k127_5554426_16 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000000000000000008029 207.0
LYD2_k127_5554426_17 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000003091 198.0
LYD2_k127_5554426_18 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.000000000000000000000000000000000000000000001369 171.0
LYD2_k127_5554426_19 Histidine kinase A domain protein K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000007545 174.0
LYD2_k127_5554426_2 Thiamine pyrophosphate enzyme, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008973 580.0
LYD2_k127_5554426_20 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000009305 154.0
LYD2_k127_5554426_21 LysM domain - - - 0.0000000000000000000000000000000000003654 153.0
LYD2_k127_5554426_22 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.000000000000000000000000008225 117.0
LYD2_k127_5554426_23 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000000000000000891 115.0
LYD2_k127_5554426_24 COG2203 FOG GAF domain - - - 0.000004233 58.0
LYD2_k127_5554426_25 Major Facilitator Superfamily - - - 0.0004424 45.0
LYD2_k127_5554426_3 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 506.0
LYD2_k127_5554426_4 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 461.0
LYD2_k127_5554426_5 4 iron, 4 sulfur cluster binding K07139 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 427.0
LYD2_k127_5554426_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 438.0
LYD2_k127_5554426_7 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 426.0
LYD2_k127_5554426_8 Methylenetetrahydrofolate reductase K00297 GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009138 315.0
LYD2_k127_5554426_9 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001836 260.0
LYD2_k127_5567177_0 Cation transporter/ATPase, N-terminus K01531,K12955 - 3.6.3.2 0.0 1202.0
LYD2_k127_5567177_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005158 571.0
LYD2_k127_5567177_10 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000001891 61.0
LYD2_k127_5567177_11 nuclease activity - - - 0.00000007723 56.0
LYD2_k127_5567177_2 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 464.0
LYD2_k127_5567177_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 433.0
LYD2_k127_5567177_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 408.0
LYD2_k127_5567177_5 PFAM Cobyrinic acid ac-diamide synthase K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000266 266.0
LYD2_k127_5567177_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000001655 205.0
LYD2_k127_5567177_7 Erythromycin esterase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000006127 202.0
LYD2_k127_5567177_8 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000001979 166.0
LYD2_k127_5567177_9 S4 domain K14761 - - 0.000000000000000000003135 95.0
LYD2_k127_558148_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 484.0
LYD2_k127_558148_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 325.0
LYD2_k127_558148_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000008912 261.0
LYD2_k127_5610879_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 3.325e-278 880.0
LYD2_k127_5610879_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 451.0
LYD2_k127_5610879_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009421 370.0
LYD2_k127_5610879_3 PFAM cytochrome c assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 305.0
LYD2_k127_5610879_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001382 258.0
LYD2_k127_5610879_5 - - - - 0.000000000004254 67.0
LYD2_k127_5610879_6 peptidylprolyl isomerase K07533 - 5.2.1.8 0.0000001802 63.0
LYD2_k127_5610879_7 Domain of unknown function (DUF4912) K09942 - - 0.0000002817 62.0
LYD2_k127_5610879_8 Tetratricopeptide TPR_2 repeat protein - - - 0.00002179 56.0
LYD2_k127_5615306_0 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 300.0
LYD2_k127_5615306_1 TatD related DNase K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000002676 256.0
LYD2_k127_5615306_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000002459 207.0
LYD2_k127_5615306_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000001457 197.0
LYD2_k127_5615306_4 cheY-homologous receiver domain - - - 0.000000000000000000000000000001013 125.0
LYD2_k127_5615306_5 Conserved hypothetical protein 698 - - - 0.000000003959 68.0
LYD2_k127_5615306_6 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000004537 50.0
LYD2_k127_5642558_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.437e-276 863.0
LYD2_k127_5642558_1 membrane transporter protein K07090 - - 1.671e-202 638.0
LYD2_k127_5642558_2 Sigma-54 interaction domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004095 484.0
LYD2_k127_5642558_3 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 460.0
LYD2_k127_5642558_4 Histidine kinase K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 329.0
LYD2_k127_5642558_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001306 263.0
LYD2_k127_5642558_6 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000001028 190.0
LYD2_k127_5642558_7 PFAM UspA - - - 0.00000000000000000000000000000000000000000000000003527 189.0
LYD2_k127_5642558_8 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000001945 127.0
LYD2_k127_565027_0 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 549.0
LYD2_k127_565027_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 413.0
LYD2_k127_565027_10 C4-type zinc ribbon domain K07164 - - 0.0000000000000000000000000000000000000000002334 168.0
LYD2_k127_565027_11 - - - - 0.0001385 46.0
LYD2_k127_565027_13 - - - - 0.000359 49.0
LYD2_k127_565027_2 Transcriptional regulator K11921,K19338 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007108 378.0
LYD2_k127_565027_3 Phosphomethylpyrimidine kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 359.0
LYD2_k127_565027_4 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007095 358.0
LYD2_k127_565027_5 Thiamine biosynthesis protein (ThiI) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 310.0
LYD2_k127_565027_7 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000001739 257.0
LYD2_k127_565027_8 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000003385 240.0
LYD2_k127_565027_9 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000001289 219.0
LYD2_k127_5692224_0 ABC transporter K02021,K06147,K11085 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006855,GO:0006869,GO:0008144,GO:0008150,GO:0008289,GO:0008559,GO:0009987,GO:0010876,GO:0015221,GO:0015238,GO:0015399,GO:0015405,GO:0015437,GO:0015893,GO:0015920,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034040,GO:0034204,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042802,GO:0042908,GO:0042910,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0071944,GO:0097035,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901265,GO:1901363,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 501.0
LYD2_k127_5692224_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 491.0
LYD2_k127_5692224_10 - - - - 0.0000000001875 64.0
LYD2_k127_5692224_2 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 301.0
LYD2_k127_5692224_3 transferase activity, transferring glycosyl groups K13500 - 2.4.1.175,2.4.1.226 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 299.0
LYD2_k127_5692224_4 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000975 226.0
LYD2_k127_5692224_5 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008289,GO:0008689,GO:0008757,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0042538,GO:0043167,GO:0043168,GO:0043431,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0061542,GO:0071704,GO:1901576,GO:1901611,GO:1901661,GO:1901663 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000001539 160.0
LYD2_k127_5692224_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000009998 126.0
LYD2_k127_5692224_7 AMP binding - - - 0.0000000000000000000000000000005449 132.0
LYD2_k127_5692224_8 O-antigen K02847 - - 0.0000000000007796 80.0
LYD2_k127_5692224_9 CYTH K05873 - 4.6.1.1 0.000000000001102 75.0
LYD2_k127_5738602_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000827 464.0
LYD2_k127_5738602_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000003154 243.0
LYD2_k127_5738602_2 DsrE/DsrF-like family K06039 - - 0.0000000000000000000000000000000000000009414 149.0
LYD2_k127_5738602_3 DNA-binding transcription factor activity K03655,K03892,K21903 - 3.6.4.12 0.00000000000000000007057 93.0
LYD2_k127_5738602_4 DNA-binding transcription factor activity K03655,K03892,K21903 - 3.6.4.12 0.0000000000000000009633 89.0
LYD2_k127_5738602_5 MMPL family K07003 - - 0.00000000000004579 76.0
LYD2_k127_5738602_6 sulfur relay protein TusB DsrH K07237 - - 0.00002493 50.0
LYD2_k127_5738602_7 Belongs to the DsrF TusC family K07236 - - 0.00008729 50.0
LYD2_k127_5738602_8 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0001454 46.0
LYD2_k127_5738602_9 DsrE/DsrF-like family K07235 - - 0.0002427 46.0
LYD2_k127_5744947_0 PFAM V-type ATPase 116 kDa K02123 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 563.0
LYD2_k127_5744947_1 denitrification pathway - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 322.0
LYD2_k127_5744947_2 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001069 278.0
LYD2_k127_5744947_3 Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) K03620,K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000001169 241.0
LYD2_k127_5744947_4 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000004927 212.0
LYD2_k127_5744947_5 Part of the ABC transporter complex PstSACB involved in phosphate import - - - 0.0000000000000000000000000000001068 129.0
LYD2_k127_5744947_6 PilZ domain - - - 0.0000009138 59.0
LYD2_k127_5771278_0 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 - - 3.181e-276 868.0
LYD2_k127_5771278_1 ABC transporter K06158 - - 2.645e-242 763.0
LYD2_k127_5771278_10 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000004236 124.0
LYD2_k127_5771278_11 PilZ domain - - - 0.0000000000000000000001675 106.0
LYD2_k127_5771278_12 O COG3187 Heat shock protein - - - 0.000000000001581 76.0
LYD2_k127_5771278_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 597.0
LYD2_k127_5771278_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 398.0
LYD2_k127_5771278_4 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 394.0
LYD2_k127_5771278_5 Cytochrome b/b6/petB K00412,K03888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 306.0
LYD2_k127_5771278_6 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 291.0
LYD2_k127_5771278_7 Universal stress protein family - - - 0.0000000000000000000000000000000000000000001356 164.0
LYD2_k127_5771278_8 Universal stress protein family - - - 0.000000000000000000000000000000000000000006581 158.0
LYD2_k127_5771278_9 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000000000001608 138.0
LYD2_k127_5778405_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 7.491e-311 960.0
LYD2_k127_5778405_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 7.19e-244 764.0
LYD2_k127_5778405_10 Belongs to the TrpC family K01609 - 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000004867 249.0
LYD2_k127_5778405_11 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000008947 239.0
LYD2_k127_5778405_12 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000008683 231.0
LYD2_k127_5778405_13 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000001513 174.0
LYD2_k127_5778405_14 Universal stress protein family - - - 0.000000000000000000000000000000000000001483 155.0
LYD2_k127_5778405_15 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03832 - - 0.000000000000000000000000000000000000314 151.0
LYD2_k127_5778405_16 proteolysis K03665 - - 0.000000000000000000000000000007891 124.0
LYD2_k127_5778405_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 3.402e-196 619.0
LYD2_k127_5778405_3 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008365 491.0
LYD2_k127_5778405_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 420.0
LYD2_k127_5778405_5 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 371.0
LYD2_k127_5778405_6 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 337.0
LYD2_k127_5778405_7 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000813 303.0
LYD2_k127_5778405_8 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000005298 261.0
LYD2_k127_5778405_9 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000004711 249.0
LYD2_k127_5791871_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 568.0
LYD2_k127_5828993_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin - - - 5.257e-257 797.0
LYD2_k127_5828993_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 305.0
LYD2_k127_5835225_0 PFAM peptidase K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 404.0
LYD2_k127_5835225_1 Mur ligase family, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 319.0
LYD2_k127_5835225_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000001265 205.0
LYD2_k127_5835225_3 - - - - 0.0000000000000000000000000000008914 125.0
LYD2_k127_5835225_4 Transcriptional regulator - - - 0.00000000000000000000002532 103.0
LYD2_k127_5835225_5 Transposase - - - 0.000000000000000006769 85.0
LYD2_k127_5847810_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 5.799e-235 735.0
LYD2_k127_5847810_1 Lipid A core-O-antigen ligase-like enyme K18814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 560.0
LYD2_k127_5847810_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 409.0
LYD2_k127_5847810_3 SMART AAA ATPase K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009752 392.0
LYD2_k127_5847810_4 - - - - 0.000000000000000000000000000000000000000000000000000000004718 204.0
LYD2_k127_5847810_5 Bacterial regulatory proteins, crp family - - - 0.00000000000000000000000000000000000000000000000001791 188.0
LYD2_k127_5847810_6 phosphatase activity K05967 - - 0.000000000000000000000000000000000000000006324 160.0
LYD2_k127_5847810_7 Chain length determinant protein K16554 - - 0.0000000000000000000000000000001722 126.0
LYD2_k127_5847810_8 Type II secretion system protein B K02451 - - 0.000000000000001118 85.0
LYD2_k127_5847810_9 Protein of unknown function (DUF2934) - - - 0.00005518 49.0
LYD2_k127_5855854_0 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 325.0
LYD2_k127_5855854_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000001106 235.0
LYD2_k127_5855854_2 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000002079 169.0
LYD2_k127_5855903_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 6.677e-244 767.0
LYD2_k127_5855903_1 General secretory system II, protein E domain protein K02652 - - 7.421e-216 687.0
LYD2_k127_5855903_10 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.00007093 47.0
LYD2_k127_5855903_2 FAD binding domain K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 625.0
LYD2_k127_5855903_3 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008888 545.0
LYD2_k127_5855903_4 two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 475.0
LYD2_k127_5855903_5 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 468.0
LYD2_k127_5855903_6 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 378.0
LYD2_k127_5855903_7 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 336.0
LYD2_k127_5855903_8 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000004216 194.0
LYD2_k127_5855903_9 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000004304 55.0
LYD2_k127_5862112_0 PFAM Prenyltransferase squalene oxidase K01852,K06045 - 4.2.1.129,5.4.99.17,5.4.99.7 3.221e-242 765.0
LYD2_k127_5862112_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008814 328.0
LYD2_k127_5862112_2 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008727 263.0
LYD2_k127_5862112_3 TIGRFAM hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.00000000000000000000000000000000000000000000000000000000007751 217.0
LYD2_k127_5862112_4 YdjC-like protein - - - 0.000000000000000000000000000000000000000000000000000102 198.0
LYD2_k127_5862112_5 Nad-dependent epimerase dehydratase K00091 - 1.1.1.219 0.0000000000000000000000000000000000002111 145.0
LYD2_k127_5862112_6 EamA-like transporter family - - - 0.000000000000000000302 94.0
LYD2_k127_5910725_0 NADH-quinone oxidoreductase K00341 - 1.6.5.3 3.793e-244 769.0
LYD2_k127_5910725_1 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 604.0
LYD2_k127_5910725_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299,K22341 - 1.17.1.10,1.17.1.11,1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 553.0
LYD2_k127_5910725_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 446.0
LYD2_k127_5910725_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004465 419.0
LYD2_k127_5910725_5 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000004617 160.0
LYD2_k127_5910725_6 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000975 147.0
LYD2_k127_5910725_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000002293 127.0
LYD2_k127_5965111_0 Belongs to the peptidase S16 family K01338,K04076 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 577.0
LYD2_k127_5965111_1 PFAM lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000001104 241.0
LYD2_k127_6000459_0 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 3.782e-218 689.0
LYD2_k127_6000459_1 PFAM Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 403.0
LYD2_k127_6000459_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 381.0
LYD2_k127_6007802_0 Chain length determinant protein K16554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004013 560.0
LYD2_k127_6007802_1 export protein K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 292.0
LYD2_k127_6007802_2 Putative beta-barrel porin 2 K20920 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001431 291.0
LYD2_k127_6007802_3 - - - - 0.0000000000000000000000000000000000000000541 157.0
LYD2_k127_6007802_4 phosphorelay sensor kinase activity - - - 0.000000000000000000000000000000000001333 145.0
LYD2_k127_6007802_5 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.000000000000000000000000000000000002118 148.0
LYD2_k127_6007802_6 PilZ domain - - - 0.0000000000000000000000000000005242 126.0
LYD2_k127_6013933_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006599 595.0
LYD2_k127_6013933_1 S-adenosylhomocysteine deaminase activity K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 412.0
LYD2_k127_6013933_2 PFAM Uncharacterised protein family UPF0182 K09118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 335.0
LYD2_k127_6013933_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000003057 140.0
LYD2_k127_6013933_4 Transposase K07483 - - 0.0000000813 59.0
LYD2_k127_6047726_0 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 6.323e-199 625.0
LYD2_k127_6047726_1 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006763 258.0
LYD2_k127_6047726_2 radical SAM K06871 - - 0.000000000000000000000000000000000000000003017 168.0
LYD2_k127_6047726_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000001069 97.0
LYD2_k127_6054072_0 PFAM sigma-54 factor interaction domain-containing protein K02481,K07714,K10943 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 363.0
LYD2_k127_6054072_1 ACT domain K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000004018 257.0
LYD2_k127_6054072_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002913 256.0
LYD2_k127_6054072_3 phosphorelay sensor kinase activity K02491,K07697 - 2.7.13.3 0.000000000000000000000000000000000000000000000001023 195.0
LYD2_k127_6106172_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 445.0
LYD2_k127_6106172_1 MacB-like periplasmic core domain K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 438.0
LYD2_k127_6106172_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001138 248.0
LYD2_k127_6106172_3 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000007054 107.0
LYD2_k127_6106172_4 - - - - 0.00000000000072 68.0
LYD2_k127_6106172_5 TIGRFAM phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 - - 0.000003537 58.0
LYD2_k127_6108699_0 CoA binding domain K09181 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 521.0
LYD2_k127_6108699_1 e3 binding domain K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 484.0
LYD2_k127_6108699_2 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 356.0
LYD2_k127_6108699_3 TraB family K09973 - - 0.000000000000000000000000000000000000000000000001285 186.0
LYD2_k127_6112092_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009744 579.0
LYD2_k127_6112092_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 486.0
LYD2_k127_6112092_2 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 377.0
LYD2_k127_6112092_3 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008923 366.0
LYD2_k127_6112092_4 Two component regulator propeller K00936 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000002137 248.0
LYD2_k127_6112092_5 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000002478 201.0
LYD2_k127_6112092_6 Protein of unknown function (DUF3365) - - - 0.000000000000000000000000000000003209 149.0
LYD2_k127_6112092_7 Cytochrome c554 and c-prime - - - 0.00000000000000000000000004961 107.0
LYD2_k127_6164169_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008677 577.0
LYD2_k127_6164169_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 578.0
LYD2_k127_6164169_10 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000001577 235.0
LYD2_k127_6164169_11 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000006814 183.0
LYD2_k127_6164169_12 Nitrogen fixation master sensor histidine kinase, PAS domain-containing K02668,K07708,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000005303 185.0
LYD2_k127_6164169_13 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000001099 148.0
LYD2_k127_6164169_14 PFAM CheW domain protein K03408 - - 0.0000000000000000000000000000000000002116 147.0
LYD2_k127_6164169_15 Binds the 23S rRNA K02909 - - 0.00000000000000000000000002043 109.0
LYD2_k127_6164169_16 PBS lyase HEAT domain protein repeat-containing protein - - - 0.0000000000000000189 94.0
LYD2_k127_6164169_2 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006407 565.0
LYD2_k127_6164169_3 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 559.0
LYD2_k127_6164169_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 509.0
LYD2_k127_6164169_5 Chemotaxis sensory transducer K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006143 422.0
LYD2_k127_6164169_6 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 344.0
LYD2_k127_6164169_7 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 314.0
LYD2_k127_6164169_8 metal-dependent enzyme K09153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 298.0
LYD2_k127_6164169_9 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000487 266.0
LYD2_k127_6195955_0 Aminotransferase class I and II K10206 - 2.6.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 559.0
LYD2_k127_6195955_1 Branched-chain amino acid transport system / permease component K01997 GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015179,GO:0015188,GO:0015190,GO:0015192,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015820,GO:0015823,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0043090,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0089718,GO:0098655,GO:0098656,GO:0098657,GO:0098713,GO:0098739,GO:1902475,GO:1903714,GO:1903785,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000006911 234.0
LYD2_k127_6195955_2 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000007191 168.0
LYD2_k127_6195955_3 40-residue YVTN family beta-propeller repeat - - - 0.0000000009741 70.0
LYD2_k127_6206338_0 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000000000000000000001438 198.0
LYD2_k127_6206338_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000002183 127.0
LYD2_k127_6210711_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 587.0
LYD2_k127_6210711_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 408.0
LYD2_k127_6210711_10 protein (some members contain a von Willebrand factor type A (vWA) domain - - - 0.00008235 46.0
LYD2_k127_6210711_11 Titin-like K12567 GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000819,GO:0001701,GO:0001756,GO:0001932,GO:0002020,GO:0002576,GO:0002791,GO:0002793,GO:0003002,GO:0003007,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003300,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004713,GO:0005198,GO:0005200,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005856,GO:0005859,GO:0005865,GO:0006323,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007059,GO:0007076,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007512,GO:0007517,GO:0008015,GO:0008092,GO:0008150,GO:0008152,GO:0008307,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009893,GO:0009952,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010604,GO:0010628,GO:0010737,GO:0010927,GO:0014706,GO:0014866,GO:0014896,GO:0014897,GO:0015629,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016459,GO:0016460,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021591,GO:0022402,GO:0022607,GO:0023052,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030048,GO:0030049,GO:0030154,GO:0030239,GO:0030240,GO:0030241,GO:0030261,GO:0030506,GO:0031032,GO:0031033,GO:0031034,GO:0031323,GO:0031399,GO:0031430,GO:0031433,GO:0031672,GO:0031674,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0032991,GO:0033058,GO:0033275,GO:0034622,GO:0035051,GO:0035265,GO:0035282,GO:0035556,GO:0035994,GO:0035995,GO:0036211,GO:0036379,GO:0040007,GO:0040011,GO:0042221,GO:0042325,GO:0042692,GO:0042802,GO:0042805,GO:0043009,GO:0043056,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043549,GO:0043621,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0044877,GO:0045055,GO:0045214,GO:0045859,GO:0046872,GO:0046903,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048644,GO:0048646,GO:0048729,GO:0048731,GO:0048738,GO:0048739,GO:0048747,GO:0048769,GO:0048856,GO:0048869,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051146,GO:0051171,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051276,GO:0051338,GO:0051371,GO:0051393,GO:0051592,GO:0051606,GO:0051716,GO:0055001,GO:0055002,GO:0055003,GO:0055006,GO:0055007,GO:0055008,GO:0055013,GO:0060047,GO:0060048,GO:0060255,GO:0060322,GO:0060415,GO:0060419,GO:0060429,GO:0060537,GO:0061053,GO:0061061,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0070252,GO:0070925,GO:0071103,GO:0071688,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0090087,GO:0090257,GO:0097435,GO:0097493,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0140014,GO:0140096,GO:1901077,GO:1901564,GO:1901897,GO:1903047,GO:1903530,GO:1903532,GO:1904951 2.7.11.1 0.0007921 51.0
LYD2_k127_6210711_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 344.0
LYD2_k127_6210711_3 helix_turn_helix, Lux Regulon K02282,K07689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 296.0
LYD2_k127_6210711_4 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000001762 263.0
LYD2_k127_6210711_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003519 269.0
LYD2_k127_6210711_6 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000002736 209.0
LYD2_k127_6210711_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000003432 173.0
LYD2_k127_6210711_8 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000001421 133.0
LYD2_k127_6210711_9 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000005366 115.0
LYD2_k127_6241469_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1067.0
LYD2_k127_6241469_1 dUTP biosynthetic process K01494 GO:0003674,GO:0003824,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000002089 259.0
LYD2_k127_6241469_2 PFAM Isochorismatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005369 256.0
LYD2_k127_6241469_3 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000003044 218.0
LYD2_k127_6241469_4 carbon dioxide binding K04653 - - 0.00000000000000004121 86.0
LYD2_k127_6241469_5 PFAM Tetratricopeptide repeat - - - 0.000002233 57.0
LYD2_k127_624677_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 384.0
LYD2_k127_624677_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 300.0
LYD2_k127_624677_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001202 262.0
LYD2_k127_624677_3 Universal stress protein family K07090 - - 0.000000000000000000000000000000000000000000000000000001583 202.0
LYD2_k127_624677_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000001956 171.0
LYD2_k127_624677_5 Domain of unknown function (DUF3786) - - - 0.00000000000000000000000000000000000000000004532 167.0
LYD2_k127_624677_6 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000001129 156.0
LYD2_k127_6280567_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.0 1079.0
LYD2_k127_6280567_1 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 3.168e-254 796.0
LYD2_k127_6280567_10 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000005204 221.0
LYD2_k127_6280567_11 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000008656 187.0
LYD2_k127_6280567_12 cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000000002128 169.0
LYD2_k127_6280567_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 7.097e-232 728.0
LYD2_k127_6280567_3 molybdopterin oxidoreductase Fe4S4 region K05299 - 1.17.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 514.0
LYD2_k127_6280567_4 Ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 415.0
LYD2_k127_6280567_5 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 374.0
LYD2_k127_6280567_6 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 338.0
LYD2_k127_6280567_7 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 296.0
LYD2_k127_6280567_8 histidine kinase, HAMP K07642 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000003037 249.0
LYD2_k127_6280567_9 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000008825 236.0
LYD2_k127_6310297_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 604.0
LYD2_k127_6310297_1 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 501.0
LYD2_k127_6310297_10 Uncharacterised MFS-type transporter YbfB - - - 0.00000000000000000000000000000000000000000000000000000000000000001661 229.0
LYD2_k127_6310297_11 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.0000000000000000000000000000000000000000000000001938 185.0
LYD2_k127_6310297_12 bacterial (prokaryotic) histone like domain K05788 - - 0.00000000000000000000000001732 111.0
LYD2_k127_6310297_13 Alanine-zipper, major outer membrane lipoprotein - - - 0.0000000000000003164 82.0
LYD2_k127_6310297_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 437.0
LYD2_k127_6310297_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 440.0
LYD2_k127_6310297_4 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 433.0
LYD2_k127_6310297_5 Chorismate mutase type II K14170 - 4.2.1.51,5.4.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 415.0
LYD2_k127_6310297_6 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 321.0
LYD2_k127_6310297_7 Peptidase family S49 K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005245 318.0
LYD2_k127_6310297_8 L,D-transpeptidase catalytic domain K16291 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000101 278.0
LYD2_k127_6310297_9 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001769 268.0
LYD2_k127_636751_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009458 575.0
LYD2_k127_636751_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 354.0
LYD2_k127_636751_2 PFAM FAD linked oxidase domain protein K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000004594 184.0
LYD2_k127_636751_3 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.000000000000000000000000000000000000000000000009281 175.0
LYD2_k127_636751_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K00406,K01011,K07112 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000003108 176.0
LYD2_k127_636751_5 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000001075 159.0
LYD2_k127_636751_6 Sulphur transport K07112 - - 0.0000000000000000000000000000000000007001 145.0
LYD2_k127_636751_7 TM2 domain - - - 0.00000000000000000000000000000000009055 137.0
LYD2_k127_63715_0 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 519.0
LYD2_k127_63715_1 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 494.0
LYD2_k127_63715_2 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 409.0
LYD2_k127_63715_3 Universal stress protein - - - 0.000000000000000000000000000000000000000000000000000000000005221 217.0
LYD2_k127_63715_4 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000002044 222.0
LYD2_k127_63715_5 Protein of unknown function (DUF1255) K09913 - 2.4.2.1,2.4.2.2 0.00000000000000000000000000000000000000000000003795 171.0
LYD2_k127_63715_6 - - - - 0.000000000000000001242 88.0
LYD2_k127_63715_7 Universal stress protein family K07090 - - 0.0000000000000256 74.0
LYD2_k127_668595_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 1.254e-206 651.0
LYD2_k127_668595_1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 384.0
LYD2_k127_668595_2 (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001941 267.0
LYD2_k127_693484_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 8.649e-217 682.0
LYD2_k127_693484_1 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000000000000000000007137 219.0
LYD2_k127_693484_2 PFAM Archease protein family (DUF101 UPF0211) - - - 0.00000000002976 66.0
LYD2_k127_693484_3 - - - - 0.000003728 54.0
LYD2_k127_693484_4 - - - - 0.00001403 53.0
LYD2_k127_70190_0 Belongs to the glycosyl hydrolase 13 family - - - 3.243e-315 981.0
LYD2_k127_70190_1 pathogenesis K13669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 633.0
LYD2_k127_70190_10 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000003412 134.0
LYD2_k127_70190_11 CAAX protease self-immunity K07052 - - 0.0000000001016 70.0
LYD2_k127_70190_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005115 459.0
LYD2_k127_70190_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 428.0
LYD2_k127_70190_4 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 395.0
LYD2_k127_70190_5 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 343.0
LYD2_k127_70190_6 Transcriptional regulatory protein, C terminal K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009268 287.0
LYD2_k127_70190_7 Type II and III secretion system protein K02666 - - 0.000000000000000000000000000000000000000000000000000000000001609 221.0
LYD2_k127_70190_8 Protein of unknown function DUF47 K02039,K07220 - - 0.00000000000000000000000000000000000000000000000006973 184.0
LYD2_k127_70190_9 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000000000000000000000000001201 182.0
LYD2_k127_721360_0 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 310.0
LYD2_k127_721360_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000003581 109.0
LYD2_k127_768441_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 480.0
LYD2_k127_768441_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006585 458.0
LYD2_k127_768441_2 - - - - 0.000000000000000000000003018 102.0
LYD2_k127_768441_3 DHHA2 K15986 - 3.6.1.1 0.000000000001227 68.0
LYD2_k127_768441_4 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000003234 61.0
LYD2_k127_768915_0 Bacterial type II and III secretion system protein K02453,K03219 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001782 302.0
LYD2_k127_768915_1 group 2 family protein - - - 0.000000000000000000000000000000003556 133.0
LYD2_k127_768915_2 - - - - 0.00000000000000000000001734 115.0
LYD2_k127_768915_3 - - - - 0.0000001297 59.0
LYD2_k127_779466_0 Clostripain family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 442.0
LYD2_k127_779466_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 404.0
LYD2_k127_779466_2 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000921 212.0
LYD2_k127_779466_3 Transglutaminase-like superfamily - - - 0.000000000000000000000000000001099 132.0
LYD2_k127_779466_4 - - - - 0.000000000000004927 75.0
LYD2_k127_779466_5 PFAM histidine kinase, HAMP region domain protein K03406 - - 0.0000000004722 64.0
LYD2_k127_803385_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 2.725e-259 812.0
LYD2_k127_803385_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 468.0
LYD2_k127_803385_10 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000001599 170.0
LYD2_k127_803385_11 B12 binding domain K04034 - 1.21.98.3 0.0000000000000000000000000000000000000000001546 175.0
LYD2_k127_803385_12 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000005996 168.0
LYD2_k127_803385_13 Histidine kinase K02660,K11525 - - 0.000000000000000000000000000000000004391 145.0
LYD2_k127_803385_15 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000004231 92.0
LYD2_k127_803385_16 - K06039,K07092 - - 0.000000049 59.0
LYD2_k127_803385_17 Sigma-54 interaction domain - - - 0.0000314 48.0
LYD2_k127_803385_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 426.0
LYD2_k127_803385_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 415.0
LYD2_k127_803385_4 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 388.0
LYD2_k127_803385_5 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 288.0
LYD2_k127_803385_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000004248 235.0
LYD2_k127_803385_7 O-methyltransferase family 3 - - - 0.0000000000000000000000000000000000000000000000000000000001241 211.0
LYD2_k127_803385_8 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000002163 207.0
LYD2_k127_803385_9 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000001911 207.0
LYD2_k127_807277_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 592.0
LYD2_k127_807277_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000001793 243.0
LYD2_k127_807277_2 PFAM Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000008083 169.0
LYD2_k127_807277_3 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.00000000000000000000000000000000000000000427 160.0
LYD2_k127_807277_4 SWI complex, BAF60b domains - - - 0.000000000000000000000000000005081 121.0
LYD2_k127_807277_5 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 - 2.1.1.200,3.5.1.19,6.1.1.16 0.000000001557 60.0
LYD2_k127_808196_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 9.45e-214 676.0
LYD2_k127_808196_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 7.348e-208 657.0
LYD2_k127_808196_2 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 569.0
LYD2_k127_808196_3 DHH family K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 445.0
LYD2_k127_808196_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 332.0
LYD2_k127_808196_5 Preprotein translocase subunit K03210 - - 0.00000000000000000000000000000002704 128.0
LYD2_k127_852220_0 radical SAM domain protein - - - 0.00000000000000000000000000000001839 139.0
LYD2_k127_852220_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000002527 73.0
LYD2_k127_85284_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 1.245e-211 668.0
LYD2_k127_85284_1 Surface antigen K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 589.0
LYD2_k127_85284_2 TIGRFAM cysteine K12339 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 421.0
LYD2_k127_85284_3 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000003661 120.0
LYD2_k127_85284_4 protein secretion K09800 - - 0.00000000000000000000000000005827 119.0
LYD2_k127_85284_5 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000001794 113.0
LYD2_k127_85284_6 Cold shock K03704 - - 0.000000000000000000000000002764 111.0
LYD2_k127_85284_8 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000004374 102.0
LYD2_k127_85284_9 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000409 65.0
LYD2_k127_858058_0 Carbon-nitrogen hydrolase K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006004 516.0
LYD2_k127_858058_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 398.0
LYD2_k127_858058_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 398.0
LYD2_k127_858058_3 membrane K09133 - - 0.00000000000000000000000000000000000000000000000008978 184.0
LYD2_k127_858058_4 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 0.00000000000000000000000000000000000000878 148.0
LYD2_k127_868459_0 Sigma-54 interaction domain K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 559.0
LYD2_k127_868459_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 360.0
LYD2_k127_868459_2 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 316.0
LYD2_k127_868459_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 304.0
LYD2_k127_868459_4 Response regulator receiver domain K03413 - - 0.000000000000000000000000000000000000000000009215 165.0
LYD2_k127_868459_5 thiolester hydrolase activity - - - 0.00000000000000000000000000002351 122.0
LYD2_k127_868459_6 HEAT repeats - - - 0.000115 54.0
LYD2_k127_874932_0 alcohol dehydrogenase K00008 - 1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 418.0
LYD2_k127_874932_1 Glucose dehydrogenase C-terminus K00008 - 1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 395.0
LYD2_k127_874932_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 297.0
LYD2_k127_874932_3 PFAM ResB family protein K07399 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004135 254.0
LYD2_k127_874932_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000002611 164.0
LYD2_k127_874932_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000006242 141.0
LYD2_k127_874932_6 - - - - 0.0000000000000008313 82.0
LYD2_k127_893349_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 2.627e-263 831.0
LYD2_k127_893349_1 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 1.546e-243 774.0
LYD2_k127_893349_10 MOSC domain - - - 0.000000000000000000000000002373 114.0
LYD2_k127_893349_11 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000002821 97.0
LYD2_k127_893349_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 1.275e-196 619.0
LYD2_k127_893349_3 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 602.0
LYD2_k127_893349_4 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000463 373.0
LYD2_k127_893349_5 DNA recombination-mediator protein A K03168,K04096 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 319.0
LYD2_k127_893349_6 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007961 245.0
LYD2_k127_893349_7 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002958 244.0
LYD2_k127_893349_8 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000002225 139.0
LYD2_k127_893349_9 Transcriptional regulator, MerR family - - - 0.0000000000000000000000000000000001958 137.0
LYD2_k127_904922_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000003414 207.0
LYD2_k127_904922_1 3-isopropylmalate dehydratase activity K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000006555 193.0
LYD2_k127_904922_2 Virulence factor BrkB - - - 0.000000000000003698 77.0
LYD2_k127_904922_3 Protein of unknown function (DUF1059) - - - 0.000000006154 58.0
LYD2_k127_933945_0 Surface antigen K07277 - - 5.577e-261 826.0
LYD2_k127_933945_1 Nitrite and sulphite reductase 4Fe-4S K11181 - 1.8.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 499.0
LYD2_k127_933945_2 Nitrite and sulphite reductase 4Fe-4S K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675 477.0
LYD2_k127_933945_3 Nitrite and sulphite reductase 4Fe-4S K11180 - 1.8.99.5 0.0000000000000000000000001398 106.0
LYD2_k127_933945_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.000002807 51.0
LYD2_k127_937275_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00123,K00336,K05299,K06441 - 1.12.7.2,1.17.1.10,1.17.1.9,1.6.5.3 4.669e-226 718.0
LYD2_k127_937275_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 605.0
LYD2_k127_937275_2 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain K00528,K16951 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000947 338.0
LYD2_k127_937275_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000001515 214.0
LYD2_k127_937275_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain - - - 0.00000000000000000000000000000000000000000000000000002044 194.0
LYD2_k127_937275_5 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000002902 164.0
LYD2_k127_937275_6 phosphate ion binding K02040 - - 0.00000000000000000000000000000000000000000004493 171.0
LYD2_k127_937275_7 Belongs to the glutamate synthase family - - - 0.0000003589 57.0
LYD2_k127_937275_8 peptidyl-tyrosine sulfation - - - 0.0004021 47.0
LYD2_k127_953004_0 Cell shape determining protein MreB Mrl K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005567 251.0
LYD2_k127_953004_1 Peptidyl-prolyl cis-trans isomerase K03772,K03773 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000007372 235.0
LYD2_k127_953004_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001197 239.0
LYD2_k127_953004_3 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000007425 205.0
LYD2_k127_953004_4 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000002526 191.0
LYD2_k127_953004_5 PFAM Response regulator receiver domain K07658 - - 0.000000000516 71.0
LYD2_k127_96514_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 1.351e-239 750.0
LYD2_k127_96514_1 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.000000000000000000000000000000000000000000000000001409 192.0
LYD2_k127_96514_2 PIN domain K07063 - - 0.0000000000000000000000000000000000008687 143.0
LYD2_k127_96514_3 TIGRFAM Protein of - - - 0.000000000000000000000000004128 110.0
LYD2_k127_96514_4 Cytochrome c oxidase subunit III K02276,K02299 - 1.9.3.1 0.0000000000000000000006219 98.0
LYD2_k127_96514_5 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.00000000000000000001793 92.0
LYD2_k127_972877_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.133e-242 757.0
LYD2_k127_972877_1 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 5.475e-238 759.0
LYD2_k127_972877_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000006324 160.0
LYD2_k127_972877_3 ATP synthesis coupled proton transport K02109,K18682 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000006048 154.0
LYD2_k127_972877_4 ATP synthesis coupled proton transport K02109 GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0016020,GO:0016469,GO:0032991,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045259,GO:0045260,GO:0071944,GO:0098796,GO:0098797 - 0.000000000000000000000000123 111.0
LYD2_k127_988577_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008922 526.0