logo

Overview

ID MAG02039
Name LYD2_bin.12
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Gallionellaceae
Genus
Species
Assembly information
Completeness (%) 69.04
Contamination (%) 1.29
GC content (%) 58.0
N50 (bp) 8,815
Genome size (bp) 1,878,028

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1968

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_108266_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.72e-274 855.0
LYD2_k127_108266_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000007624 214.0
LYD2_k127_1121056_0 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 549.0
LYD2_k127_1121056_1 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 327.0
LYD2_k127_1121056_2 Bacterial regulatory proteins, tetR family K05501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006302 293.0
LYD2_k127_1121056_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000000000000000002585 199.0
LYD2_k127_1121056_4 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000000000006157 138.0
LYD2_k127_1121056_5 Copper chaperone PCu(A)C K09796 - - 0.00000000000000000000000000001078 125.0
LYD2_k127_1121205_0 TIGRFAM phosphate regulon sensor kinase PhoR K07636 - 2.7.13.3 5.266e-196 619.0
LYD2_k127_1121205_1 Fructosamine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007756 432.0
LYD2_k127_1121205_2 Two component transcriptional regulator PhoB, winged helix family K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 389.0
LYD2_k127_1121205_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07032 - - 0.000000000000000000000000000000000000000000000000000000000000000002442 228.0
LYD2_k127_1121205_4 pfkB family carbohydrate kinase K00852,K00856 - 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000001142 173.0
LYD2_k127_1121205_5 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 0.0000000000000000000000000000000000002838 141.0
LYD2_k127_1140755_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.309e-266 828.0
LYD2_k127_1140755_1 PFAM ABC transporter related K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 508.0
LYD2_k127_1140755_10 TIGRFAM transcriptional regulator, Rrf2 family K13771 - - 0.00000000000000000000000000000000000000000000003859 176.0
LYD2_k127_1140755_2 Oxidoreductase FAD-binding domain K14581 - 1.18.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000754 427.0
LYD2_k127_1140755_3 VanZ like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 400.0
LYD2_k127_1140755_4 PFAM ABC-2 type transporter K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007317 375.0
LYD2_k127_1140755_5 Serine aminopeptidase, S33 K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 323.0
LYD2_k127_1140755_6 Hemerythrin HHE cation binding domain protein K07216 - - 0.00000000000000000000000000000000000000000000000000000000000000003712 226.0
LYD2_k127_1140755_7 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.000000000000000000000000000000000000000000000000000000000000002047 221.0
LYD2_k127_1140755_8 Thioesterase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000005192 215.0
LYD2_k127_1140755_9 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000002732 178.0
LYD2_k127_1177086_0 K+ potassium transporter K03549 - - 2.071e-257 807.0
LYD2_k127_1177086_1 von Willebrand factor, type A - - - 3.023e-202 646.0
LYD2_k127_1177086_2 PFAM response regulator receiver K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002487 280.0
LYD2_k127_1177086_3 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000001093 254.0
LYD2_k127_1192949_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.979e-210 661.0
LYD2_k127_1192949_1 Major Facilitator Superfamily - - - 9.127e-205 644.0
LYD2_k127_1192949_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 543.0
LYD2_k127_1192949_3 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 457.0
LYD2_k127_1192949_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 348.0
LYD2_k127_1192949_5 TIGRFAM phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 323.0
LYD2_k127_1192949_6 Histidine kinase K20975 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008512 319.0
LYD2_k127_1192949_7 Glycoprotease family K14742 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004167 296.0
LYD2_k127_1192949_8 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004097 271.0
LYD2_k127_1192949_9 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789,K14742 - 2.3.1.128 0.000000000000000000000000000000000000000006138 160.0
LYD2_k127_1214958_0 Transposase IS116 IS110 IS902 family protein K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007241 489.0
LYD2_k127_1214958_1 PFAM DEAD DEAH box helicase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 342.0
LYD2_k127_1214958_3 transposase IS116 IS110 IS902 family K07486 - - 0.00000002262 55.0
LYD2_k127_124302_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1591.0
LYD2_k127_124302_1 Neisseria PilC beta-propeller domain K02674 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 559.0
LYD2_k127_124302_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 507.0
LYD2_k127_124302_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000001182 190.0
LYD2_k127_124302_4 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000287 76.0
LYD2_k127_1286572_0 Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 595.0
LYD2_k127_1286572_1 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 420.0
LYD2_k127_1286572_2 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009304 397.0
LYD2_k127_1286572_3 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 347.0
LYD2_k127_1286572_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 333.0
LYD2_k127_1286572_5 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005626 263.0
LYD2_k127_1286572_6 PFAM AMMECR1 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000294 248.0
LYD2_k127_1286572_7 Dienelactone hydrolase family - - - 0.000000000000000000000000000000131 126.0
LYD2_k127_1291377_0 DHH family K07462 - - 3.616e-276 859.0
LYD2_k127_1291377_1 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 555.0
LYD2_k127_1297423_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 2.014e-264 820.0
LYD2_k127_1297423_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 6.756e-226 707.0
LYD2_k127_1297423_2 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003971 394.0
LYD2_k127_1297423_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000001696 154.0
LYD2_k127_1297423_4 DUF167 K09131 - - 0.000000000000000000000000000000000000003549 147.0
LYD2_k127_1297423_5 YGGT family K02221 - - 0.0000000000000000000000007696 106.0
LYD2_k127_1332248_0 Neisseria PilC beta-propeller domain K02674 - - 0.0 1488.0
LYD2_k127_1332248_1 TYPE 4 fimbrial BIOGENESIS K02672 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 421.0
LYD2_k127_1332248_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 317.0
LYD2_k127_1332248_3 type IV pilus modification protein PilV K02671 - - 0.0000000000000000000000000000000000000000000000006004 190.0
LYD2_k127_1332248_4 Pilus assembly protein PilX - - - 0.000000000000000000000000000000000000000000000005293 178.0
LYD2_k127_1332248_5 protein transport across the cell outer membrane K08084 - - 0.0000000000000000000000000000000008349 136.0
LYD2_k127_1332248_6 Histidine kinase K11617 - 2.7.13.3 0.00000000000000005687 94.0
LYD2_k127_1332248_7 histidine kinase HAMP region domain protein - - - 0.000000000008269 78.0
LYD2_k127_134148_0 cytochrome c peroxidase K00428 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007733 512.0
LYD2_k127_134148_1 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 346.0
LYD2_k127_134148_3 Mate efflux family protein K03327 - - 0.0000000000000000000000000007769 114.0
LYD2_k127_1361867_0 Nif-specific regulatory protein K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 590.0
LYD2_k127_1361867_1 PFAM EAL domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 411.0
LYD2_k127_1361867_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000005539 146.0
LYD2_k127_1364092_0 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 1.722e-251 786.0
LYD2_k127_1364092_1 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 381.0
LYD2_k127_1364092_2 Glycosyl transferase - GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 381.0
LYD2_k127_1364092_3 pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004224 302.0
LYD2_k127_1364092_4 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000003848 220.0
LYD2_k127_1364092_5 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000000000000007551 216.0
LYD2_k127_1364092_6 molybdopterin biosynthesis MoaE K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000242 196.0
LYD2_k127_1364092_7 DsrC like protein K11179 - - 0.00000000000000000000000000000003915 131.0
LYD2_k127_1364092_8 - - - - 0.000000000000000000000000003587 115.0
LYD2_k127_1364092_9 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000002594 81.0
LYD2_k127_1368495_0 ATPase (P-type) K01535 - 3.6.3.6 0.0 1335.0
LYD2_k127_1368495_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 7.037e-269 836.0
LYD2_k127_1368495_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 2.004e-221 688.0
LYD2_k127_1368495_3 Ribosomal protein L31 K02909 - - 0.00000000000000000000000000000000000006802 147.0
LYD2_k127_1368495_4 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000002912 137.0
LYD2_k127_1368495_5 Selenoprotein, putative - - - 0.000000000000159 74.0
LYD2_k127_1368495_6 Carbon starvation protein CstA K06200 - - 0.000000006023 57.0
LYD2_k127_1375986_0 Capsule biosynthesis GfcC - - - 3.312e-269 855.0
LYD2_k127_1375986_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 414.0
LYD2_k127_139560_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0 1245.0
LYD2_k127_139560_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 358.0
LYD2_k127_139560_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009976 340.0
LYD2_k127_139560_3 Phytochelatin synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004364 289.0
LYD2_k127_139560_4 PFAM TrkA-N domain protein K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000923 229.0
LYD2_k127_139560_5 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.00000000000000000000000000000001082 128.0
LYD2_k127_1405170_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 1.052e-208 651.0
LYD2_k127_1405170_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 2.943e-199 626.0
LYD2_k127_1405170_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009346 550.0
LYD2_k127_1405170_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 414.0
LYD2_k127_1405170_4 pilus assembly protein FimV K08086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 406.0
LYD2_k127_1405170_5 pilus assembly protein FimV K08086 - - 0.0000000000000000000000000000000000000002181 156.0
LYD2_k127_1405170_6 - - - - 0.00000000004075 66.0
LYD2_k127_1414028_0 COG0474 Cation transport ATPase K01531 - 3.6.3.2 4.379e-217 683.0
LYD2_k127_1414028_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 492.0
LYD2_k127_1414028_2 Ion channel K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 462.0
LYD2_k127_1414028_3 Phosphorylase superfamily K00772,K03815 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 369.0
LYD2_k127_1414028_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004261 253.0
LYD2_k127_1416317_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 5.223e-235 741.0
LYD2_k127_1416317_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 3.801e-228 710.0
LYD2_k127_1416317_10 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 463.0
LYD2_k127_1416317_11 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009386 436.0
LYD2_k127_1416317_12 Domain of unknown function (DUF4276) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 319.0
LYD2_k127_1416317_13 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 296.0
LYD2_k127_1416317_14 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000504 273.0
LYD2_k127_1416317_15 Small Multidrug Resistance protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000004242 232.0
LYD2_k127_1416317_16 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000000000000000000007958 198.0
LYD2_k127_1416317_17 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000008884 59.0
LYD2_k127_1416317_2 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 5.179e-228 707.0
LYD2_k127_1416317_3 Belongs to the DegT DnrJ EryC1 family - - - 6.55e-221 687.0
LYD2_k127_1416317_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 603.0
LYD2_k127_1416317_5 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842 607.0
LYD2_k127_1416317_6 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006612 580.0
LYD2_k127_1416317_7 Glycosyl transferase family 2 K10012 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 559.0
LYD2_k127_1416317_8 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 545.0
LYD2_k127_1416317_9 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 497.0
LYD2_k127_1419593_0 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003668 246.0
LYD2_k127_1419593_1 Sulfurtransferase TusA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001836 244.0
LYD2_k127_1419593_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001066 227.0
LYD2_k127_1419593_3 Cas6 Crispr - - - 0.0000000000000000000000000000000000000000000000000000000005672 207.0
LYD2_k127_1419593_4 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000000000004208 185.0
LYD2_k127_1419593_5 Nitrite and sulphite reductase 4Fe-4S domain K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000002711 170.0
LYD2_k127_1419593_6 - - - - 0.0000000000000000000000007886 105.0
LYD2_k127_1448259_0 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001939 525.0
LYD2_k127_1448259_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008018 375.0
LYD2_k127_1448259_2 PFAM Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000007719 179.0
LYD2_k127_1448259_3 PFAM ABC transporter related - - - 0.00000000000000000000000000000000000000000000002118 170.0
LYD2_k127_1448259_4 Transposase and inactivated derivatives K07491 - - 0.000000000008448 66.0
LYD2_k127_1455859_0 fad dependent oxidoreductase K07137 - - 4.606e-294 908.0
LYD2_k127_1455859_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 4.055e-270 834.0
LYD2_k127_1455859_2 ABC1 family K03688 - - 7.309e-252 789.0
LYD2_k127_1455859_3 Diguanylate cyclase (GGDEF) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 613.0
LYD2_k127_1455859_4 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 413.0
LYD2_k127_1455859_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 384.0
LYD2_k127_1455859_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001163 268.0
LYD2_k127_1455859_7 - - - - 0.000000000000000000000000000000000000000000000000000000388 199.0
LYD2_k127_1455859_8 oxygen carrier activity K07216 - - 0.0000000000000000002075 88.0
LYD2_k127_1480473_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1098.0
LYD2_k127_1480473_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.62e-279 867.0
LYD2_k127_1480473_10 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 387.0
LYD2_k127_1480473_11 MucB/RseB C-terminal domain K03598 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006843 390.0
LYD2_k127_1480473_12 TIGRFAM RNA polymerase sigma factor RpoE K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 356.0
LYD2_k127_1480473_13 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 339.0
LYD2_k127_1480473_14 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 335.0
LYD2_k127_1480473_15 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 332.0
LYD2_k127_1480473_16 PFAM Anti sigma-E protein RseA family protein K03597 - - 0.000000000000000000000000000000000000000000000000000000005376 202.0
LYD2_k127_1480473_17 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000000002974 174.0
LYD2_k127_1480473_18 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000000000000000007131 175.0
LYD2_k127_1480473_19 PQ loop repeat K15383 - - 0.000000000000000000000000000000009744 128.0
LYD2_k127_1480473_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 1.207e-242 759.0
LYD2_k127_1480473_20 PFAM Positive regulator of sigma(E) RseC MucC K03803 - - 0.00000000000000000000005019 104.0
LYD2_k127_1480473_21 - - - - 0.0000000000000000001121 94.0
LYD2_k127_1480473_22 Belongs to the phosphoglycerate mutase family K01834,K22306 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237 3.1.3.85,5.4.2.11 0.0000001152 61.0
LYD2_k127_1480473_24 Methyltransferase domain - - - 0.0000009685 50.0
LYD2_k127_1480473_3 PFAM peptidase S1 and S6 chymotrypsin Hap K04771 - 3.4.21.107 2.232e-214 673.0
LYD2_k127_1480473_4 Alpha/beta hydrolase family K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 531.0
LYD2_k127_1480473_5 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 510.0
LYD2_k127_1480473_6 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 481.0
LYD2_k127_1480473_7 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 424.0
LYD2_k127_1480473_8 PFAM Peptidase S24 S26A S26B, conserved region K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 419.0
LYD2_k127_1480473_9 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 418.0
LYD2_k127_149448_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0 1056.0
LYD2_k127_149448_1 PFAM ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009703 548.0
LYD2_k127_149448_2 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 296.0
LYD2_k127_1501508_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 9.928e-291 904.0
LYD2_k127_1501508_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.00000000000000000000000000000000002788 136.0
LYD2_k127_1524362_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 2.933e-266 831.0
LYD2_k127_1524362_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 1.415e-227 710.0
LYD2_k127_1524362_10 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000000000001018 223.0
LYD2_k127_1524362_11 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000000000000000006569 186.0
LYD2_k127_1524362_12 PFAM Di-haem cytochrome c - - - 0.00000000000000000000000000000000000000000000000002064 184.0
LYD2_k127_1524362_13 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000000000001407 132.0
LYD2_k127_1524362_14 ABC transporter transmembrane region K11004 - - 0.000000000000001539 78.0
LYD2_k127_1524362_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 600.0
LYD2_k127_1524362_3 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 553.0
LYD2_k127_1524362_4 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 510.0
LYD2_k127_1524362_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 377.0
LYD2_k127_1524362_6 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 287.0
LYD2_k127_1524362_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001658 279.0
LYD2_k127_1524362_8 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008459 237.0
LYD2_k127_1524362_9 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000000000000000005306 225.0
LYD2_k127_1530904_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1535.0
LYD2_k127_1530904_1 Nucleotidyl transferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 454.0
LYD2_k127_1530904_2 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 292.0
LYD2_k127_1530904_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000002449 160.0
LYD2_k127_1530904_4 Cupin domain - - - 0.00000000000000000000000000000000000000001972 156.0
LYD2_k127_1530904_5 FR47-like protein - - - 0.00000000000154 76.0
LYD2_k127_153453_0 Outer membrane lipoprotein-sorting protein K07003 - - 6.972e-235 749.0
LYD2_k127_153453_1 PFAM tRNA synthetase class II (D K and N) K04567 - 6.1.1.6 3.887e-224 696.0
LYD2_k127_153453_2 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 311.0
LYD2_k127_153453_3 Sh3 type 3 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000002715 242.0
LYD2_k127_153453_4 Outer membrane lipoprotein-sorting protein K07003 - - 0.00000000000000000000000000000000000000000000000000000000000001066 228.0
LYD2_k127_153453_5 - - - - 0.000000000000000000000000000000000000000000000000000000003202 204.0
LYD2_k127_1558061_0 PFAM type II secretion system protein E K02670 - - 6.093e-212 661.0
LYD2_k127_1558061_1 PFAM type II secretion system protein E K02669,K12203 - - 5.459e-203 638.0
LYD2_k127_1558061_2 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.000000000000000000000000000000000000000000000000000000000000000499 222.0
LYD2_k127_1558061_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000008007 121.0
LYD2_k127_1570025_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01539 - 3.6.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 616.0
LYD2_k127_1570025_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000001902 188.0
LYD2_k127_1575820_0 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 3.44e-240 749.0
LYD2_k127_1575820_1 TIGRFAM efflux transporter, RND family, MFP subunit K07798,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 507.0
LYD2_k127_1575820_2 PFAM outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 454.0
LYD2_k127_1575820_3 TIGRFAM heavy metal efflux pump, CzcA family K07787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 438.0
LYD2_k127_1575820_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000000008101 161.0
LYD2_k127_1575820_5 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000005974 98.0
LYD2_k127_1619076_0 Vitamin B12 dependent methionine synthase activation region K00548 - 2.1.1.13 0.0 2241.0
LYD2_k127_1619076_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1038.0
LYD2_k127_1619076_2 - - - - 0.00000000000431 65.0
LYD2_k127_167437_0 PFAM DEAD DEAH box helicase domain protein - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 1.077e-223 705.0
LYD2_k127_167437_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 501.0
LYD2_k127_167437_2 PFAM iron permease FTR1 K07243 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000933 398.0
LYD2_k127_167437_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006584 359.0
LYD2_k127_167437_4 Cupredoxin-like domain - - - 0.00000000000000000000000000000000000000001953 154.0
LYD2_k127_167437_5 PFAM ferric-uptake regulator K03711 - - 0.0000000006119 60.0
LYD2_k127_1687_0 PFAM aminotransferase class I and II K00812 - 2.6.1.1 3.129e-227 707.0
LYD2_k127_1687_1 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.0000000000000000000000000000000000000000000000000000000000000000000021 238.0
LYD2_k127_1687_2 translation initiation factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000001324 230.0
LYD2_k127_1689767_0 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 3.496e-223 699.0
LYD2_k127_1689767_1 Phospholipase/Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 329.0
LYD2_k127_1689767_2 Protein of unknown function (DUF615) K09889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001357 246.0
LYD2_k127_1689767_5 - - - - 0.00002703 46.0
LYD2_k127_169776_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 575.0
LYD2_k127_169776_1 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 312.0
LYD2_k127_169776_2 RNB K01147 - 3.1.13.1 0.000000000000000000000000000000000000000000000001821 174.0
LYD2_k127_169776_3 SMART Calcium-binding EF-hand-containing protein - - - 0.00000000000000000000000000000373 128.0
LYD2_k127_169776_4 Cytochrome C oxidase, cbb3-type, subunit III K08738 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000004603 120.0
LYD2_k127_169776_6 Signal peptide protein - - - 0.0001518 52.0
LYD2_k127_1699510_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 4.757e-213 666.0
LYD2_k127_1699510_1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 607.0
LYD2_k127_1699510_10 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000204 63.0
LYD2_k127_1699510_2 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 570.0
LYD2_k127_1699510_3 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 471.0
LYD2_k127_1699510_4 PFAM MoeA domain protein domain I and II K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 457.0
LYD2_k127_1699510_5 Histidine kinase K07673 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 312.0
LYD2_k127_1699510_6 helix_turn_helix, Lux Regulon K07684 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 292.0
LYD2_k127_1699510_7 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000008171 142.0
LYD2_k127_1699510_8 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.0000000000000000000000000000000001446 132.0
LYD2_k127_1699510_9 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.00000000000000000000000528 103.0
LYD2_k127_1846751_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0 1191.0
LYD2_k127_1846751_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 2.965e-205 643.0
LYD2_k127_1846751_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 544.0
LYD2_k127_1846751_3 Signal transduction response regulator, receiver region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005716 405.0
LYD2_k127_1846751_4 Integral membrane protein TerC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 362.0
LYD2_k127_1846751_5 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000008022 203.0
LYD2_k127_1846751_6 Histidine kinase - - - 0.0000000000000000000000000000000000000000002916 168.0
LYD2_k127_187730_0 metal-dependent phosphohydrolase HD sub domain - - - 7.324e-244 764.0
LYD2_k127_187730_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 464.0
LYD2_k127_187730_2 Rhodanese Homology Domain K06917 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 387.0
LYD2_k127_187730_3 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000001181 226.0
LYD2_k127_187730_4 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000236 207.0
LYD2_k127_189627_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 585.0
LYD2_k127_189627_1 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000413 263.0
LYD2_k127_189627_2 Bacterial protein of unknown function (DUF899) K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000126 255.0
LYD2_k127_189627_3 VirC1 protein K03496 - - 0.00000000000000000000000000000000000000000000004389 179.0
LYD2_k127_189627_4 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.00000000000000000000000000106 117.0
LYD2_k127_1906365_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 574.0
LYD2_k127_1906365_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 358.0
LYD2_k127_1906365_2 ATP synthase subunit D K02120 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009094 350.0
LYD2_k127_1906365_3 SpoU rRNA Methylase family K03437 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 328.0
LYD2_k127_1906365_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007612 315.0
LYD2_k127_1906365_5 Segregation and condensation complex subunit ScpB K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001633 283.0
LYD2_k127_1906365_6 transport system periplasmic component K01989 - - 0.000000000000000000000000000000000000000003006 169.0
LYD2_k127_1906365_7 TonB-dependent receptor, beta-barrel - - - 0.000000000000000000000000000000000000006961 168.0
LYD2_k127_1915668_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 1.85e-274 850.0
LYD2_k127_1915668_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 430.0
LYD2_k127_1915668_2 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 417.0
LYD2_k127_1915668_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000000000002653 168.0
LYD2_k127_1915668_4 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000000000000174 157.0
LYD2_k127_1919800_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.358e-260 805.0
LYD2_k127_1919800_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 393.0
LYD2_k127_1919800_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 327.0
LYD2_k127_1919800_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 292.0
LYD2_k127_1919800_4 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000000000000000000007274 141.0
LYD2_k127_1919800_5 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.00000000000000000000000995 100.0
LYD2_k127_1951747_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1426.0
LYD2_k127_1951747_1 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 5.239e-256 795.0
LYD2_k127_1951747_2 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009209 606.0
LYD2_k127_1951747_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 571.0
LYD2_k127_1951747_4 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 393.0
LYD2_k127_1951747_5 LytTr DNA-binding domain K08083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003135 368.0
LYD2_k127_1951747_6 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000001221 250.0
LYD2_k127_1951747_7 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000001626 246.0
LYD2_k127_1951747_8 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000000006198 171.0
LYD2_k127_1951747_9 PFAM type II and III secretion system protein K02666 - - 0.0000000000000369 72.0
LYD2_k127_1952002_0 ABC transporter transmembrane region K06147 - - 2.318e-303 940.0
LYD2_k127_1952002_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 445.0
LYD2_k127_1952002_2 PFAM peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 354.0
LYD2_k127_1952002_3 mechanosensitive - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 334.0
LYD2_k127_1952002_4 PFAM Endonuclease exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002119 266.0
LYD2_k127_1952002_5 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000001737 198.0
LYD2_k127_1952002_7 Domain of unknown function (DUF4468) with TBP-like fold - - - 0.0000000009396 71.0
LYD2_k127_1957288_0 COG0286 Type I restriction-modification system K03427 - 2.1.1.72 1.679e-275 851.0
LYD2_k127_1957288_1 PFAM CHAD domain containing protein - - - 1.234e-209 662.0
LYD2_k127_1957288_10 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 316.0
LYD2_k127_1957288_11 COG1512 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008767 287.0
LYD2_k127_1957288_12 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000147 273.0
LYD2_k127_1957288_13 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000004698 236.0
LYD2_k127_1957288_14 restriction modification system DNA specificity K01154 - 3.1.21.3 0.00000000000000000000000000000000000000000000000000000000004142 219.0
LYD2_k127_1957288_15 endonuclease containing a URI domain - - - 0.00000000000000000000000000000000000000000003517 174.0
LYD2_k127_1957288_16 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000000000000000000001151 160.0
LYD2_k127_1957288_17 PrpF protein K16514 - 5.3.2.8 0.000000000000000000000000001321 124.0
LYD2_k127_1957288_18 SpoVT / AbrB like domain K07172 - - 0.0000000000000000000000008831 106.0
LYD2_k127_1957288_19 Domain of unknown function (DUF4389) - - - 0.00000000000000000000001456 103.0
LYD2_k127_1957288_2 HI0933-like protein K07007 - - 4.091e-206 648.0
LYD2_k127_1957288_20 - - - - 0.00000000000008041 72.0
LYD2_k127_1957288_21 Protein of unknown function (DUF3460) - - - 0.000000004935 59.0
LYD2_k127_1957288_3 protein conserved in bacteria K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 580.0
LYD2_k127_1957288_4 Dienelactone hydrolase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 400.0
LYD2_k127_1957288_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 362.0
LYD2_k127_1957288_6 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336 353.0
LYD2_k127_1957288_7 DNA-damage-inducible protein d - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 343.0
LYD2_k127_1957288_8 Thiopurine S-methyltransferase (TPMT) K00569 - 2.1.1.67 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 331.0
LYD2_k127_1957288_9 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 317.0
LYD2_k127_1973645_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 0.0 1594.0
LYD2_k127_1973645_1 Ring hydroxylating alpha subunit (catalytic domain) K00499 - 1.14.15.7 1.661e-216 676.0
LYD2_k127_1973645_10 - - - - 0.000000000000000000000000000000000000000000000000002482 188.0
LYD2_k127_1973645_11 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000009664 185.0
LYD2_k127_1973645_12 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000003824 100.0
LYD2_k127_1973645_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 608.0
LYD2_k127_1973645_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002211 485.0
LYD2_k127_1973645_4 Polyprenyl synthetase K00795 - 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 399.0
LYD2_k127_1973645_5 EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 389.0
LYD2_k127_1973645_6 MltA-interacting MipA family protein K07274 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 318.0
LYD2_k127_1973645_7 SpoIIAA-like - - - 0.000000000000000000000000000000000000000000000000000001567 192.0
LYD2_k127_1973645_8 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000003033 196.0
LYD2_k127_1973645_9 Transcriptional regulator K07782,K15852,K19666,K19734 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032465,GO:0032467,GO:0032991,GO:0032993,GO:0043254,GO:0043565,GO:0044087,GO:0044089,GO:0044212,GO:0045787,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051302,GO:0051726,GO:0051781,GO:0060255,GO:0065007,GO:0080090,GO:0090068,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.0000000000000000000000000000000000000000000000000007538 192.0
LYD2_k127_1978235_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 4.901e-226 702.0
LYD2_k127_1978235_1 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 340.0
LYD2_k127_1978235_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 335.0
LYD2_k127_1978235_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000005865 149.0
LYD2_k127_1978235_4 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000001918 130.0
LYD2_k127_1987685_0 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003789 493.0
LYD2_k127_1987685_1 TIGRFAM para-aminobenzoate synthase, subunit I K01665,K03342 - 2.6.1.85,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 489.0
LYD2_k127_1987685_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006836 451.0
LYD2_k127_1987685_3 geranylgeranyl reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 448.0
LYD2_k127_1987685_4 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000001447 260.0
LYD2_k127_1987685_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000306 197.0
LYD2_k127_1987685_6 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000000000001861 123.0
LYD2_k127_1992334_0 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006194 519.0
LYD2_k127_1992334_1 Papain cysteine protease family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 387.0
LYD2_k127_1992334_2 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009268 346.0
LYD2_k127_1992334_3 Lipase (class 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002507 285.0
LYD2_k127_1992334_4 phospholipase K01058 - 3.1.1.32,3.1.1.4 0.000000000000000000000000000000000000000000000000000004362 202.0
LYD2_k127_1992334_5 KTSC domain - - - 0.00000000000000000000000000000000000000000001088 164.0
LYD2_k127_1992334_6 BolA-like protein K05527 - - 0.0000000001006 62.0
LYD2_k127_2016715_0 PFAM Orn Lys Arg decarboxylase major region K01584 - 4.1.1.19 2.2e-322 988.0
LYD2_k127_2016715_1 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 589.0
LYD2_k127_2016715_2 Protein involved in meta-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008501 422.0
LYD2_k127_2016715_3 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000000000000008048 231.0
LYD2_k127_2016715_4 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000004048 67.0
LYD2_k127_2016715_5 Diguanylate cyclase - - - 0.000000237 53.0
LYD2_k127_201673_0 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 539.0
LYD2_k127_201673_1 Domain of unknown function (DUF389) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 436.0
LYD2_k127_201673_2 peptidase M24B X-Pro dipeptidase aminopeptidase domain protein K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 323.0
LYD2_k127_201673_3 TIGRFAM Na H antiporter, bacterial form K03316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002601 278.0
LYD2_k127_2048919_0 Large family of predicted nucleotide-binding domains K07175 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000439 482.0
LYD2_k127_2048919_1 Intracellular septation protein A K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002054 276.0
LYD2_k127_2048919_2 Belongs to the MsrB Met sulfoxide reductase family K07305,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000001635 229.0
LYD2_k127_2048919_3 YCII-related domain K09780 - - 0.0000000000000000000000000000000000000000167 154.0
LYD2_k127_2048919_4 BolA-like protein K05527 - - 0.0000000000000000000002027 104.0
LYD2_k127_2051204_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 3.437e-271 846.0
LYD2_k127_2051204_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 440.0
LYD2_k127_2051204_10 Tellurite resistance protein TehB - - - 0.0000000000000001268 79.0
LYD2_k127_2051204_11 - - - - 0.00000000004218 69.0
LYD2_k127_2051204_12 - - - - 0.0005206 47.0
LYD2_k127_2051204_2 Thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009372 299.0
LYD2_k127_2051204_3 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 292.0
LYD2_k127_2051204_4 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000002754 219.0
LYD2_k127_2051204_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000399 214.0
LYD2_k127_2051204_6 PFAM cytochrome c class I K08738 - - 0.0000000000000000000000000000000000000008021 151.0
LYD2_k127_2051204_8 cyclic nucleotide binding K10914 - - 0.000000000000000000005206 99.0
LYD2_k127_2051204_9 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000506 86.0
LYD2_k127_2065433_0 Likely ribonuclease with RNase H fold. K06959 - - 0.0 1261.0
LYD2_k127_2065433_1 secreted hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115 484.0
LYD2_k127_2065433_2 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 471.0
LYD2_k127_2065433_3 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008343 457.0
LYD2_k127_2065433_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009762 417.0
LYD2_k127_2104275_0 Bacterial transcriptional activator domain - - - 8.347e-206 678.0
LYD2_k127_2104275_1 General secretion pathway K02462 - - 0.00000000000000000000000000004592 123.0
LYD2_k127_2133746_0 General secretory system II protein E domain protein K02454,K02652,K12276 - - 2.242e-243 764.0
LYD2_k127_2133746_1 Virulence factor membrane-bound polymerase, C-terminal - - - 9.389e-201 642.0
LYD2_k127_2133746_10 Beta-xylanase K01181 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0016052,GO:0016787,GO:0016798,GO:0030312,GO:0031176,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0045491,GO:0045493,GO:0071554,GO:0071704,GO:0071944,GO:0097599,GO:1901575 3.2.1.8 0.0000000001528 64.0
LYD2_k127_2133746_2 PFAM NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 480.0
LYD2_k127_2133746_3 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004499 501.0
LYD2_k127_2133746_4 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000000001946 261.0
LYD2_k127_2133746_5 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000000000000000000000000000000000000000000000000001488 221.0
LYD2_k127_2133746_6 Bacterial SH3 domain - - - 0.000000000000000000000000000000000000000002322 166.0
LYD2_k127_2133746_7 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000000000000000001029 135.0
LYD2_k127_2133746_8 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000003399 127.0
LYD2_k127_2133746_9 Histidine Phosphotransfer domain - - - 0.0000000000002633 73.0
LYD2_k127_21505_0 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 348.0
LYD2_k127_21505_1 cytochrome C peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007942 326.0
LYD2_k127_21505_2 PFAM NADPH-dependent FMN reductase K19784 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 313.0
LYD2_k127_21505_3 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000000000000000156 236.0
LYD2_k127_2156439_0 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 3.287e-224 704.0
LYD2_k127_2156439_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 2.078e-202 633.0
LYD2_k127_2156439_2 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 599.0
LYD2_k127_2156439_3 Glycine cleavage system K03567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 329.0
LYD2_k127_2156439_4 Belongs to the UPF0225 family K09858 - - 0.0000000000000000000000000000000000000000000000000001704 188.0
LYD2_k127_2212532_0 AcrB/AcrD/AcrF family - - - 0.0 1484.0
LYD2_k127_2212532_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 1.479e-300 925.0
LYD2_k127_2212532_10 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 293.0
LYD2_k127_2212532_11 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000004282 231.0
LYD2_k127_2212532_12 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000002796 235.0
LYD2_k127_2212532_13 E-Z type HEAT repeats - - - 0.0000000000000000000000000000000000000000000000000000000000002856 225.0
LYD2_k127_2212532_14 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000001089 215.0
LYD2_k127_2212532_15 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000009756 156.0
LYD2_k127_2212532_16 - - - - 0.000000000000000000000000000000000002154 148.0
LYD2_k127_2212532_18 PFAM aldo keto reductase - - - 0.00000000000000000002421 93.0
LYD2_k127_2212532_19 Copper binding periplasmic protein CusF K07810 - - 0.0000000000000000005007 91.0
LYD2_k127_2212532_2 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 1.092e-249 782.0
LYD2_k127_2212532_20 TfoX N-terminal domain K07343 - - 0.0001792 48.0
LYD2_k127_2212532_3 Histidine kinase K14978 - - 1.324e-222 721.0
LYD2_k127_2212532_4 NADH flavin oxidoreductase NADH oxidase K10680 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 610.0
LYD2_k127_2212532_5 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 587.0
LYD2_k127_2212532_6 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 548.0
LYD2_k127_2212532_7 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006405 510.0
LYD2_k127_2212532_8 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 404.0
LYD2_k127_2212532_9 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 396.0
LYD2_k127_2220285_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 511.0
LYD2_k127_2220285_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 416.0
LYD2_k127_2220285_10 elongation factor Tu K02358 - - 0.0000000000000000000000002735 104.0
LYD2_k127_2220285_11 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000000000000000002048 86.0
LYD2_k127_2220285_12 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000001357 68.0
LYD2_k127_2220285_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008429 366.0
LYD2_k127_2220285_3 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 361.0
LYD2_k127_2220285_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000001284 229.0
LYD2_k127_2220285_5 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000000000004352 202.0
LYD2_k127_2220285_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000000000000000000000000004554 194.0
LYD2_k127_2220285_7 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000000000000000002751 183.0
LYD2_k127_2220285_8 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000000006511 178.0
LYD2_k127_2220285_9 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000000000000006683 149.0
LYD2_k127_2228038_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.121e-237 736.0
LYD2_k127_2228038_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 418.0
LYD2_k127_2228038_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000000000000000000000000000000007632 228.0
LYD2_k127_2228038_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000000000000000000000000003049 222.0
LYD2_k127_2228038_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000009372 138.0
LYD2_k127_2282977_0 DAHP synthetase I family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 454.0
LYD2_k127_2282977_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007682 366.0
LYD2_k127_2282977_2 Part of a membrane complex involved in electron transport K03613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 351.0
LYD2_k127_2282977_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 329.0
LYD2_k127_2282977_4 Part of a membrane complex involved in electron transport K03612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 296.0
LYD2_k127_2282977_5 Domain of unknown function (DUF1841) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007045 258.0
LYD2_k127_2282977_6 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009532 246.0
LYD2_k127_2305199_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 3.55e-244 756.0
LYD2_k127_2305199_1 DNA polymerase alpha chain like domain K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 437.0
LYD2_k127_2305199_2 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 315.0
LYD2_k127_2305199_3 TIGRFAM Sua5 YciO YrdC YwlC family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 315.0
LYD2_k127_2305199_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000792 74.0
LYD2_k127_2317659_0 fibronectin type III domain protein K06882 - - 0.0 1314.0
LYD2_k127_2317659_1 CHASE2 K01768 - 4.6.1.1 2.87e-302 936.0
LYD2_k127_2317659_10 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000002549 241.0
LYD2_k127_2317659_11 Bacterial SH3 domain - - - 0.00000000000000000000000000000000000000006649 157.0
LYD2_k127_2317659_12 Competence protein K02237 - - 0.000000000000000000000000000000004574 133.0
LYD2_k127_2317659_14 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0001233 46.0
LYD2_k127_2317659_2 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 6.152e-291 908.0
LYD2_k127_2317659_3 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006154 494.0
LYD2_k127_2317659_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 433.0
LYD2_k127_2317659_5 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007757 383.0
LYD2_k127_2317659_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 347.0
LYD2_k127_2317659_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 315.0
LYD2_k127_2317659_8 Nudix N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 302.0
LYD2_k127_2317659_9 MlaA lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 297.0
LYD2_k127_2422720_0 TIGRFAM Polyphosphate nucleotide phosphotransferase, PPK2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 447.0
LYD2_k127_2422720_1 ATP synthase K02115 - - 0.0000000003584 64.0
LYD2_k127_2480049_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 580.0
LYD2_k127_2480049_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 509.0
LYD2_k127_2480049_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000007769 184.0
LYD2_k127_2480049_3 - - - - 0.00003292 49.0
LYD2_k127_2513663_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1149.0
LYD2_k127_2513663_1 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 1.263e-246 771.0
LYD2_k127_2513663_2 trans-aconitate 2-methyltransferase activity K00598,K02169 - 2.1.1.144,2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 349.0
LYD2_k127_2513663_3 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005922 272.0
LYD2_k127_2513663_4 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003102 254.0
LYD2_k127_2513663_5 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001663 241.0
LYD2_k127_2513663_6 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000001912 141.0
LYD2_k127_2543529_0 TIGRFAM ATP-dependent Clp protease ATP-binding subunit clpA K03694 - - 0.0 1157.0
LYD2_k127_2543529_1 PFAM Haloacid dehalogenase domain protein hydrolase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 439.0
LYD2_k127_2543529_2 - - - - 0.0000000000000000000000000000000000000000000000000001115 192.0
LYD2_k127_2543529_3 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000001717 164.0
LYD2_k127_2543529_4 SMART Cold shock protein K03704 - - 0.00000000000000000000000000000000007266 136.0
LYD2_k127_2547589_0 Histidine kinase - - - 0.0 1368.0
LYD2_k127_2547589_1 His Kinase A (phosphoacceptor) domain - - - 4.746e-204 647.0
LYD2_k127_2547589_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008386 530.0
LYD2_k127_2547589_3 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 448.0
LYD2_k127_2547589_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 449.0
LYD2_k127_2547589_5 SMART HTH transcriptional regulator, Crp - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003735 377.0
LYD2_k127_2547589_6 Divalent cation transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008334 268.0
LYD2_k127_2547589_7 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000003451 209.0
LYD2_k127_2547589_8 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000001809 205.0
LYD2_k127_2547589_9 PFAM EAL domain - - - 0.0000000000000000000000005553 123.0
LYD2_k127_2552075_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 452.0
LYD2_k127_2552075_1 Domain of unknown function (DUF3883) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 325.0
LYD2_k127_2552075_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009237 281.0
LYD2_k127_2552075_3 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004472 239.0
LYD2_k127_2552075_4 Fe-S-cluster oxidoreductase K06940 - - 0.000000000000000000000000000000000006106 138.0
LYD2_k127_2552075_5 Protein of unknown function (DUF1289) K06938 - - 0.00000000000000000008614 91.0
LYD2_k127_2552075_6 Dodecin K09165 - - 0.00000000000001502 73.0
LYD2_k127_2552075_7 Amidohydrolase family - - - 0.000008923 53.0
LYD2_k127_2556438_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 6.752e-255 790.0
LYD2_k127_2556438_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 497.0
LYD2_k127_2556438_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 406.0
LYD2_k127_2556438_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000009069 199.0
LYD2_k127_2556438_4 - - - - 0.00000000000000000000004019 110.0
LYD2_k127_2566091_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 5.406e-218 715.0
LYD2_k127_2566091_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 472.0
LYD2_k127_2566091_2 SIR2-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007291 321.0
LYD2_k127_2566091_3 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000005416 150.0
LYD2_k127_2566091_4 Protein of unknown function (DUF3024) - - - 0.00000000000000000000000000005574 121.0
LYD2_k127_2566091_5 NifT/FixU protein K02593 - - 0.000000000000000000000000001068 113.0
LYD2_k127_2566091_6 NifZ domain K02597 - - 0.000000000004133 66.0
LYD2_k127_2566091_7 - - - - 0.0000003835 57.0
LYD2_k127_2573919_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 4.197e-290 908.0
LYD2_k127_2573919_1 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007458 582.0
LYD2_k127_2573919_2 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 553.0
LYD2_k127_2573919_3 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004736 533.0
LYD2_k127_2573919_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 438.0
LYD2_k127_2573919_5 peptidase M24B X-Pro dipeptidase aminopeptidase domain protein K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 419.0
LYD2_k127_2573919_6 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 340.0
LYD2_k127_2573919_7 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000694 229.0
LYD2_k127_2573919_8 - - - - 0.0000000000000000000000000000000000000000000267 173.0
LYD2_k127_2573919_9 Protein of unknown function (DUF2442) - - - 0.00000000000000000000000000000000148 131.0
LYD2_k127_2586125_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 438.0
LYD2_k127_2586125_1 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 366.0
LYD2_k127_2586125_2 histidine kinase HAMP region domain protein K07649 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 355.0
LYD2_k127_2586125_3 Transcriptional regulatory protein, C terminal K02483,K07666,K07774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000694 260.0
LYD2_k127_2590561_0 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 482.0
LYD2_k127_2590561_1 P-loop ATPase protein family K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003837 431.0
LYD2_k127_2590561_2 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000000000009974 214.0
LYD2_k127_2590561_3 NusG domain II - - - 0.00000000000000000000000004785 111.0
LYD2_k127_2613161_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 472.0
LYD2_k127_2613161_1 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 460.0
LYD2_k127_2613161_2 MraZ protein, putative antitoxin-like K03925 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006885 286.0
LYD2_k127_2613161_3 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.0000000000000000000000000000000000000000000000000000000000000000000000006315 250.0
LYD2_k127_2613161_4 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000000000000000005823 118.0
LYD2_k127_2613161_5 - - - - 0.0000000002202 66.0
LYD2_k127_2643791_0 BadF/BadG/BcrA/BcrD ATPase family - - - 0.0 1131.0
LYD2_k127_2643791_1 CoA-substrate-specific enzyme activase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 561.0
LYD2_k127_2643791_2 Protein of unknown function (DUF1109) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 286.0
LYD2_k127_2643791_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001472 265.0
LYD2_k127_2643791_5 methionine sulfoxide reductase K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000001048 180.0
LYD2_k127_2643791_6 methionine sulfoxide reductase K07305 - 1.8.4.12 0.0000000000000000001198 92.0
LYD2_k127_2665899_0 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.0 1508.0
LYD2_k127_2665899_1 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 318.0
LYD2_k127_2720751_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 5.315e-234 729.0
LYD2_k127_2720751_1 histidine kinase A domain protein - - - 1.02e-207 663.0
LYD2_k127_2720751_2 Large family of predicted nucleotide-binding domains K07175 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 301.0
LYD2_k127_2720751_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000008312 245.0
LYD2_k127_2720751_4 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000001199 224.0
LYD2_k127_2720751_5 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000003892 236.0
LYD2_k127_2720751_6 Bacterial Ig-like domain 2 - - - 0.00000000000000000000000000000000000000000000007251 191.0
LYD2_k127_2720751_7 Fibronectin type III - - - 0.00000001119 68.0
LYD2_k127_2721595_0 glutamine synthetase K01915 - 6.3.1.2 3.188e-288 887.0
LYD2_k127_2721595_1 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 1.296e-253 794.0
LYD2_k127_2721595_2 Peptidase family U32 C-terminal domain K08303 - - 1.466e-247 765.0
LYD2_k127_2721595_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 564.0
LYD2_k127_2721595_4 SMART ATP-binding region ATPase domain protein K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 540.0
LYD2_k127_2721595_5 chlorophyll binding K02690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 520.0
LYD2_k127_2721595_6 Prokaryotic cytochrome b561 K12262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 314.0
LYD2_k127_2721595_7 Domain of unknown function (DUF386) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002796 260.0
LYD2_k127_2721595_8 - - - - 0.000000000000000000000000000000001697 138.0
LYD2_k127_2721595_9 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000005071 123.0
LYD2_k127_2731071_0 CoA-binding domain protein K09181 - - 0.0 1511.0
LYD2_k127_2731071_1 diguanylate cyclase K13069 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008303 304.0
LYD2_k127_2731071_2 Regulatory protein MarR - - - 0.0000000000000000000000000000000000000000000000000000000000001399 214.0
LYD2_k127_2731071_3 hydrogenase maturation protease - - - 0.000000000000000000000000000000000000000000000007316 176.0
LYD2_k127_2731071_4 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000000592 171.0
LYD2_k127_2731071_5 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00436 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 0.00000000000000000000000000000000000001853 144.0
LYD2_k127_2731071_6 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000189 116.0
LYD2_k127_2804296_0 type II secretion system protein E K02454,K02652,K12276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 526.0
LYD2_k127_2804296_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 518.0
LYD2_k127_2804296_2 General secretion pathway protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002632 439.0
LYD2_k127_2804296_3 peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 345.0
LYD2_k127_2804296_4 serine threonine protein kinase - - - 0.00000000000000000000000000000004534 142.0
LYD2_k127_2804296_5 FecR protein - - - 0.000000000000000000000000000003228 134.0
LYD2_k127_2804296_6 Caspase domain - - - 0.0000000000002433 83.0
LYD2_k127_293_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.676e-281 868.0
LYD2_k127_293_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006519 389.0
LYD2_k127_293_2 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 367.0
LYD2_k127_293_4 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000001002 139.0
LYD2_k127_298675_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 5.141e-216 675.0
LYD2_k127_298675_1 Phage integrase, N-terminal SAM-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 567.0
LYD2_k127_298675_2 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 471.0
LYD2_k127_298675_3 - - - - 0.00000000000000000000000000000000000000000000000000001345 194.0
LYD2_k127_298675_4 D-alanyl-D-alanine carboxypeptidase K07260 - 3.4.17.14 0.0000000000000000000000000000000000000000000000008709 180.0
LYD2_k127_298675_5 YoeB-like toxin of bacterial type II toxin-antitoxin system - - - 0.0000000000000000000000000000000000000000000001639 168.0
LYD2_k127_298675_6 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0000000000000000000000000003386 116.0
LYD2_k127_298675_7 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000004978 69.0
LYD2_k127_3004245_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1191.0
LYD2_k127_3004245_1 4Fe-4S binding domain K21308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 489.0
LYD2_k127_3004245_2 DMSO reductase anchor subunit (DmsC) K21309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 467.0
LYD2_k127_3004245_3 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 398.0
LYD2_k127_3004245_4 PFAM UspA domain protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000003808 244.0
LYD2_k127_3004245_5 Sulfurtransferase TusA K04085 - - 0.0000000000000000000000000000002497 124.0
LYD2_k127_3004245_6 - - - - 0.000000000000000000000000000505 123.0
LYD2_k127_3004245_7 DsrE/DsrF/DrsH-like family - - - 0.000000000000000004974 84.0
LYD2_k127_3185349_0 SMART ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008221 453.0
LYD2_k127_3185349_1 metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044 374.0
LYD2_k127_3185349_2 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004216 345.0
LYD2_k127_3185349_3 response regulator, receiver K02485 - - 0.000000000000000000000000000000000000000000000000000000000000003048 220.0
LYD2_k127_3185349_4 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000004749 236.0
LYD2_k127_3187697_0 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004174 319.0
LYD2_k127_3187697_1 ErfK ybiS ycfS ynhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005736 282.0
LYD2_k127_3187697_2 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000961 237.0
LYD2_k127_3187697_3 LemA family K03744 - - 0.000000000000000000000000000001004 122.0
LYD2_k127_3187697_4 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000001692 99.0
LYD2_k127_3190685_0 THUMP K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006613 595.0
LYD2_k127_3190685_1 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 523.0
LYD2_k127_3190685_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004673 443.0
LYD2_k127_3190685_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 344.0
LYD2_k127_3190685_4 membrane K08973 - - 0.0000000000000000000000000000000000000000000000000000006929 195.0
LYD2_k127_3190685_5 PFAM ABC-2 type transporter K09694 - - 0.0000000000000000006816 87.0
LYD2_k127_3193215_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 1.337e-223 696.0
LYD2_k127_3193215_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 451.0
LYD2_k127_3193215_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000002943 185.0
LYD2_k127_3193215_3 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000004177 94.0
LYD2_k127_3200408_0 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 326.0
LYD2_k127_3200408_1 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin K20755 - 3.4.21.121 0.0000000000000000000000000000000000000000000000000001462 199.0
LYD2_k127_3200408_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000007412 175.0
LYD2_k127_3200408_3 Regulatory protein, FmdB family - - - 0.000000000000000000000000000000002696 130.0
LYD2_k127_3228261_0 Sigma-54 interaction domain - - - 7.412e-194 616.0
LYD2_k127_3228261_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 506.0
LYD2_k127_3228261_10 response to antibiotic K07122 - - 0.0000000000000000001078 91.0
LYD2_k127_3228261_2 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 479.0
LYD2_k127_3228261_3 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 440.0
LYD2_k127_3228261_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 423.0
LYD2_k127_3228261_5 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 361.0
LYD2_k127_3228261_6 PFAM Mammalian cell entry related domain protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008685 256.0
LYD2_k127_3228261_7 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002416 252.0
LYD2_k127_3228261_8 Type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000003729 155.0
LYD2_k127_3228261_9 Belongs to the BolA IbaG family - - - 0.00000000000000000000000001984 111.0
LYD2_k127_3235126_0 general secretion pathway protein K K02460 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 311.0
LYD2_k127_3235126_1 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002823 265.0
LYD2_k127_3235126_2 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000002442 200.0
LYD2_k127_3235126_3 General secretion pathway protein K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776 - 0.00000000000000000000000000000000000000000000002081 177.0
LYD2_k127_3235126_4 General secretion pathway protein I K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000002716 139.0
LYD2_k127_3235126_5 general secretion pathway protein K02457 - - 0.00000000000000003678 88.0
LYD2_k127_3238099_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0 1041.0
LYD2_k127_3238099_1 Cytochrome b(N-terminal)/b6/petB K00412 - - 8.935e-229 711.0
LYD2_k127_3238099_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 1.865e-226 702.0
LYD2_k127_3238099_3 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 3.275e-211 663.0
LYD2_k127_3238099_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 416.0
LYD2_k127_3238099_5 Cytochrome C1 family K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002016 276.0
LYD2_k127_3238099_6 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000002112 265.0
LYD2_k127_3238099_7 TIGRFAM glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000008522 225.0
LYD2_k127_3238099_8 Planctomycete cytochrome C - - - 0.0000000000000000000000000000000000000000000000009753 177.0
LYD2_k127_3246299_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 9.245e-251 777.0
LYD2_k127_3246299_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 455.0
LYD2_k127_3246299_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004429 440.0
LYD2_k127_3246299_3 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 320.0
LYD2_k127_3246299_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000001295 183.0
LYD2_k127_3246299_5 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates - - - 0.00000000000000000000000000000000000000000000003084 178.0
LYD2_k127_3246299_6 pilus assembly protein FimV K08086 - - 0.00000000000000000000000006037 119.0
LYD2_k127_3254406_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1408.0
LYD2_k127_3254406_1 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005176 468.0
LYD2_k127_3254406_2 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000002157 139.0
LYD2_k127_3264918_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 4.886e-305 944.0
LYD2_k127_3264918_1 Protein of unknown function (DUF3050) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 361.0
LYD2_k127_3264918_10 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00000000000000000000000000000000000000000000001513 173.0
LYD2_k127_3264918_11 - - - - 0.00000000000000000000000000000000000000000008076 165.0
LYD2_k127_3264918_12 Iron-sulphur cluster assembly - - - 0.00000000000000000000000000005393 116.0
LYD2_k127_3264918_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 289.0
LYD2_k127_3264918_3 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000212 252.0
LYD2_k127_3264918_4 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000002143 237.0
LYD2_k127_3264918_5 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000116 238.0
LYD2_k127_3264918_6 TIGRFAM iron-sulfur cluster assembly protein IscA K13628 - - 0.000000000000000000000000000000000000000000000000000000008458 198.0
LYD2_k127_3264918_7 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.0000000000000000000000000000000000000000000000000000002662 196.0
LYD2_k127_3264918_8 geranylgeranyl reductase activity K10960,K17830 - 1.3.1.101,1.3.1.111,1.3.1.83,1.3.7.11 0.000000000000000000000000000000000000000000000001087 189.0
LYD2_k127_3264918_9 PFAM HPP family protein K07168 - - 0.000000000000000000000000000000000000000000000005114 182.0
LYD2_k127_3266915_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.0 1205.0
LYD2_k127_3266915_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 7.527e-275 845.0
LYD2_k127_3266915_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 590.0
LYD2_k127_3266915_3 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000008365 252.0
LYD2_k127_3266915_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000007381 152.0
LYD2_k127_3267716_0 Tetratricopeptide repeats - - - 1.162e-195 626.0
LYD2_k127_3267716_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 426.0
LYD2_k127_3267716_2 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 361.0
LYD2_k127_3267716_3 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006947 280.0
LYD2_k127_3267716_4 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.000000000000000000000000000000000000000000000000000004117 195.0
LYD2_k127_3267716_5 ABC-type uncharacterized transport system - - - 0.0000000000000000000000000003641 118.0
LYD2_k127_3267716_6 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000002084 93.0
LYD2_k127_3271204_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 4.415e-275 857.0
LYD2_k127_3271204_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.851e-251 781.0
LYD2_k127_3271204_2 Metallopeptidase family M24 K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000672 478.0
LYD2_k127_3271204_3 - - - - 0.0000001665 58.0
LYD2_k127_32800_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 9.584e-239 744.0
LYD2_k127_32800_1 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 497.0
LYD2_k127_32800_2 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000000000000000000000000002047 178.0
LYD2_k127_32800_3 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000006633 173.0
LYD2_k127_32800_4 PFAM CutA1 divalent ion tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.000000000000000000000000000000000000001559 152.0
LYD2_k127_3281457_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 562.0
LYD2_k127_3281457_1 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 442.0
LYD2_k127_3281457_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 335.0
LYD2_k127_3281457_4 Virulence factor BrkB - - - 0.00000000000000000001667 92.0
LYD2_k127_3283824_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 2028.0
LYD2_k127_3283824_1 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.0 1178.0
LYD2_k127_3283824_10 translation initiation factor activity - - - 0.0000000000000000000000000000000008978 136.0
LYD2_k127_3283824_11 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000000000000000966 125.0
LYD2_k127_3283824_12 - - - - 0.00000000000000000000000000008063 117.0
LYD2_k127_3283824_13 Prokaryotic N-terminal methylation motif - - - 0.0000000000000000000000000001468 115.0
LYD2_k127_3283824_2 Beta-ketoacyl synthase, C-terminal domain K09458,K14660 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 1.297e-203 640.0
LYD2_k127_3283824_3 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 566.0
LYD2_k127_3283824_4 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005375 507.0
LYD2_k127_3283824_5 Alpha/beta hydrolase family K03928 - 3.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 410.0
LYD2_k127_3283824_6 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 398.0
LYD2_k127_3283824_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 346.0
LYD2_k127_3283824_8 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005429 296.0
LYD2_k127_3283824_9 PFAM Sporulation domain protein - - - 0.00000000000000000000000000000000000000000000000000000000001373 216.0
LYD2_k127_3308691_0 Cation transport ATPase (P-type) K01537 - 3.6.3.8 4.461e-302 939.0
LYD2_k127_3308691_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009287 488.0
LYD2_k127_3308691_2 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000000000000000000000000000000000001381 220.0
LYD2_k127_3308691_3 Sodium/hydrogen exchanger family K03316 - - 0.0000000000000000000000003901 107.0
LYD2_k127_3308948_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.49e-287 893.0
LYD2_k127_3308948_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001594 281.0
LYD2_k127_3308948_2 Uracil DNA glycosylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000306 234.0
LYD2_k127_3309172_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0 1055.0
LYD2_k127_3309172_1 Uncharacterized protein family (UPF0051) - - - 9.849e-269 839.0
LYD2_k127_3309172_10 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 396.0
LYD2_k127_3309172_11 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 395.0
LYD2_k127_3309172_12 FMN binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006789 380.0
LYD2_k127_3309172_13 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005556 372.0
LYD2_k127_3309172_14 Uncharacterized protein family (UPF0051) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 371.0
LYD2_k127_3309172_15 Beta-ketoacyl synthase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 358.0
LYD2_k127_3309172_16 DNA-sulfur modification-associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 355.0
LYD2_k127_3309172_17 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 337.0
LYD2_k127_3309172_18 SUF system FeS assembly protein, NifU family K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000002391 233.0
LYD2_k127_3309172_19 - - - - 0.0000000000000000000000000000000000000000000000000000000000000109 232.0
LYD2_k127_3309172_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 2.179e-244 761.0
LYD2_k127_3309172_20 - - - - 0.0000000000000000000000000000000000000000000000000000000000001235 220.0
LYD2_k127_3309172_21 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000000000000000000000478 214.0
LYD2_k127_3309172_22 dehydratase - - - 0.0000000000000000000000000000000000000000000000000005401 190.0
LYD2_k127_3309172_23 TOBE domain K10111 - - 0.000000000000000000000000000000000000000000004867 170.0
LYD2_k127_3309172_24 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000007626 164.0
LYD2_k127_3309172_25 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.000000000000000000000000000000000000000004885 157.0
LYD2_k127_3309172_26 Iron-sulfur cluster assembly protein - - - 0.0000000000000000000000000000000000000000731 153.0
LYD2_k127_3309172_27 Rieske-like [2Fe-2S] domain K05710,K18087 - - 0.000000000000000000000000000000000000009116 147.0
LYD2_k127_3309172_28 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000000000000000000001128 142.0
LYD2_k127_3309172_29 Belongs to the UPF0178 family K09768 - - 0.000000000000000000003164 98.0
LYD2_k127_3309172_3 Beta-ketoacyl synthase, C-terminal domain K00647,K09458 - 2.3.1.179,2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 597.0
LYD2_k127_3309172_30 Belongs to the UPF0178 family K09768 - - 0.0000000000000000002646 91.0
LYD2_k127_3309172_4 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 589.0
LYD2_k127_3309172_5 aldo keto reductase K06221 - 1.1.1.346 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 551.0
LYD2_k127_3309172_6 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007878 517.0
LYD2_k127_3309172_7 sensor diguanylate cyclase phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 491.0
LYD2_k127_3309172_8 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 456.0
LYD2_k127_3309172_9 D12 class N6 adenine-specific DNA methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 433.0
LYD2_k127_333955_0 methyltransferase activity K21310 - 2.1.1.334 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 406.0
LYD2_k127_333955_1 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 300.0
LYD2_k127_333955_10 PFAM cytochrome c class I K08738 - - 0.00000000000000000000000005405 112.0
LYD2_k127_333955_11 LPP20 lipoprotein - - - 0.000000000000005374 87.0
LYD2_k127_333955_12 Predicted membrane protein (DUF2306) - - - 0.00007774 45.0
LYD2_k127_333955_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009862 243.0
LYD2_k127_333955_3 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001087 242.0
LYD2_k127_333955_4 membrane organization K20543 - - 0.00000000000000000000000000000000000000000000000000000000000000004783 241.0
LYD2_k127_333955_5 membrane organization K20543 - - 0.0000000000000000000000000000000000000000000000000000000001079 221.0
LYD2_k127_333955_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000005585 204.0
LYD2_k127_333955_7 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000000000000000004296 165.0
LYD2_k127_333955_8 Collagenase K08303 - - 0.000000000000000000000000000000000000000001507 156.0
LYD2_k127_333955_9 - - - - 0.0000000000000000000000000000000000000003077 155.0
LYD2_k127_3344500_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 1.286e-250 780.0
LYD2_k127_3344500_1 Nitronate monooxygenase K00459 - 1.13.12.16 6.3e-221 688.0
LYD2_k127_3344500_10 transfer protein - - - 0.000000000000000000000000000000123 139.0
LYD2_k127_3344500_11 ThiS family K03154 - - 0.000000000000000000000001493 104.0
LYD2_k127_3344500_2 Involved in the biosynthesis of porphyrin-containing compound - - - 3.663e-204 642.0
LYD2_k127_3344500_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 463.0
LYD2_k127_3344500_4 Transcriptional regulator K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 452.0
LYD2_k127_3344500_5 of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 437.0
LYD2_k127_3344500_6 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 349.0
LYD2_k127_3344500_7 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 345.0
LYD2_k127_3344500_8 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 338.0
LYD2_k127_3344500_9 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000005571 247.0
LYD2_k127_3356937_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1737.0
LYD2_k127_3356937_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 3.765e-231 717.0
LYD2_k127_3356937_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004413 295.0
LYD2_k127_3356937_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000003403 233.0
LYD2_k127_3363853_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 1.555e-234 729.0
LYD2_k127_3363853_1 PFAM peptidase S13 D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 576.0
LYD2_k127_3363853_2 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 410.0
LYD2_k127_33716_0 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 424.0
LYD2_k127_33716_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003479 270.0
LYD2_k127_33716_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000001305 171.0
LYD2_k127_33716_3 dUTPase - - - 0.00000000000000000000000000000000545 139.0
LYD2_k127_33716_4 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000002546 104.0
LYD2_k127_3425733_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 443.0
LYD2_k127_3425733_1 beta-lactamase domain protein K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 388.0
LYD2_k127_3425733_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000004545 230.0
LYD2_k127_3425733_3 PFAM Class I peptide chain release factor K15034 - - 0.000000000000000000000000000000000000000000000000000000001003 207.0
LYD2_k127_3425733_4 HNH nucleases - - - 0.00000000000000000000000000000000000000000000000434 175.0
LYD2_k127_3425733_5 S4 domain K14761 - - 0.000000000000000000000000000001713 123.0
LYD2_k127_3425733_6 - - - - 0.00000001718 57.0
LYD2_k127_3429703_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 3.456e-278 862.0
LYD2_k127_3429703_1 KR domain K07124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 405.0
LYD2_k127_3429703_2 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000003064 224.0
LYD2_k127_3429703_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000001768 123.0
LYD2_k127_3519412_0 B3/4 domain K01890 - 6.1.1.20 0.0 1253.0
LYD2_k127_3519412_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 7.548e-205 638.0
LYD2_k127_3519412_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000005574 119.0
LYD2_k127_3519412_3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000144 111.0
LYD2_k127_3522202_0 COG0474 Cation transport ATPase K01531 - 3.6.3.2 2.558e-218 683.0
LYD2_k127_3522202_1 response regulator K02483,K07666,K07774 - - 0.0000000000000000000000000000000001085 135.0
LYD2_k127_3534024_0 Outer membrane usher protein K07347 - - 1.516e-230 737.0
LYD2_k127_3534024_1 PFAM aminotransferase class IV K00824 - 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 478.0
LYD2_k127_3534024_10 Spore Coat Protein U domain - - - 0.00001012 54.0
LYD2_k127_3534024_2 PFAM peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 426.0
LYD2_k127_3534024_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 317.0
LYD2_k127_3534024_4 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 291.0
LYD2_k127_3534024_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07661 - - 0.00000000000000000000000000000000000000000000000000000000000000000004626 240.0
LYD2_k127_3534024_6 Pili and flagellar-assembly chaperone, PapD N-terminal domain K07346 - - 0.00000000000000000000000000000000000000000000000000000000000000004058 231.0
LYD2_k127_3534024_7 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000729 139.0
LYD2_k127_3534024_8 Spore Coat Protein U domain - - - 0.00000000000000000000000000000000181 142.0
LYD2_k127_3534024_9 Belongs to the UPF0250 family K09158 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000001351 79.0
LYD2_k127_353916_0 PAC sensor-containing diguanylate cyclase phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 555.0
LYD2_k127_353916_1 TIGRFAM cytochrome c-type biogenesis protein CcmI K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 522.0
LYD2_k127_353916_2 FIST_C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 456.0
LYD2_k127_353916_3 TIGRFAM periplasmic protein thiol disulphide oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 297.0
LYD2_k127_353916_4 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005553 309.0
LYD2_k127_353916_5 Cytochrome C biogenesis protein K02200 - - 0.0000000000000000000000000000000000000000000000000000000000003333 214.0
LYD2_k127_353916_6 TIGRFAM cytochrome c-type biogenesis protein CcmF K02198 - - 0.0000000000000000000000000000000000000000000000000001601 187.0
LYD2_k127_3548249_0 PFAM polysaccharide biosynthesis protein CapD - - - 1.5e-288 897.0
LYD2_k127_3548249_1 O-antigen ligase like membrane protein K02847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004334 575.0
LYD2_k127_3548249_2 Glycosyltransferase Family 4 K02844 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 481.0
LYD2_k127_3548249_3 PFAM Glycosyl transferase, family 4, conserved region K13007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 476.0
LYD2_k127_3548249_4 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008864 317.0
LYD2_k127_3548249_5 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 306.0
LYD2_k127_3548249_6 O-Antigen ligase K02847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 293.0
LYD2_k127_3611906_0 Domain of unknown function (DUF3400) - - - 0.0 1289.0
LYD2_k127_3611906_1 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000000000000000000000000000000000002911 245.0
LYD2_k127_3611906_2 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000000004791 181.0
LYD2_k127_3611906_3 cytochrome b561 K12262 - - 0.0000000000000000000000000001231 123.0
LYD2_k127_3640028_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 472.0
LYD2_k127_3640028_1 Uncharacterized protein conserved in bacteria (DUF2239) K09965 - - 0.00000000000000000000000000000000000000000000000000000000000002038 220.0
LYD2_k127_3640028_2 GGDEF Domain - - - 0.0000000000000000000000000000000000000000000001906 183.0
LYD2_k127_3640028_3 Protein of unknown function (DUF2892) - - - 0.00001349 52.0
LYD2_k127_3648083_0 histidine kinase HAMP region domain protein - - - 4.669e-282 882.0
LYD2_k127_3648083_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006097 594.0
LYD2_k127_3648083_2 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 441.0
LYD2_k127_3648083_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 429.0
LYD2_k127_3648083_4 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 291.0
LYD2_k127_3648083_5 Domain of unknown function (DUF4390) - - - 0.0000000000000000000000000000000000000000000000000001426 192.0
LYD2_k127_3648083_6 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000001738 130.0
LYD2_k127_3648083_7 - - - - 0.0000004588 55.0
LYD2_k127_36956_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1391.0
LYD2_k127_36956_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 2.2e-232 723.0
LYD2_k127_36956_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 4.39e-204 642.0
LYD2_k127_36956_3 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 616.0
LYD2_k127_36956_4 PFAM Alcohol dehydrogenase GroES domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 371.0
LYD2_k127_36956_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 353.0
LYD2_k127_36956_6 bacterial (prokaryotic) histone like domain K03530 - - 0.0000000000000000000000000000000000000001347 152.0
LYD2_k127_36956_7 - - - - 0.0000004301 54.0
LYD2_k127_36956_8 - - - - 0.00002161 46.0
LYD2_k127_3790643_0 AcyL-CoA dehydrogenase K06445 - - 5.084e-305 954.0
LYD2_k127_3790643_1 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154 551.0
LYD2_k127_3790643_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006792 503.0
LYD2_k127_3790643_3 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 434.0
LYD2_k127_3790643_4 Arginase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 355.0
LYD2_k127_3790643_5 oxygen carrier activity K07216 - - 0.00000000000000000000000000000000000000000000000007104 180.0
LYD2_k127_3790643_6 Belongs to the arginase family K01476,K01480,K12255,K18459 - 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7 0.00003259 46.0
LYD2_k127_3842936_0 glutamate synthase alpha subunit domain protein K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2703.0
LYD2_k127_3842936_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0 1069.0
LYD2_k127_3842936_2 TIGRFAM glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 5.89e-251 775.0
LYD2_k127_3842936_3 PFAM Sodium calcium exchanger membrane region K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005793 351.0
LYD2_k127_3842936_4 VirC1 protein K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 284.0
LYD2_k127_3842936_5 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007366 270.0
LYD2_k127_3842936_6 PFAM cytochrome c class I K08738 - - 0.000000000000000000000000000000000000000000000000619 177.0
LYD2_k127_3842936_7 PFAM cytochrome c class I K08738 - - 0.00000000000000000000000000000003388 128.0
LYD2_k127_3846133_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0 1095.0
LYD2_k127_3846133_1 4 iron, 4 sulfur cluster binding - - - 5.278e-231 726.0
LYD2_k127_3846133_2 PFAM glycine cleavage T protein (aminomethyl transferase) K06980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 438.0
LYD2_k127_3846133_3 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 294.0
LYD2_k127_3846133_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000007698 255.0
LYD2_k127_3846133_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000003405 203.0
LYD2_k127_3846133_6 Protein of unknown function (DUF1272) K09984 - - 0.000000000000000000000000000000000006417 137.0
LYD2_k127_3846133_7 LysM domain - - - 0.00000000000000000006549 97.0
LYD2_k127_3849686_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1202.0
LYD2_k127_3849686_1 Spermidine synthase K00797 - 2.5.1.16 1.455e-283 895.0
LYD2_k127_3849686_10 - - - - 0.0000000000000000000000000000000000000000000001068 171.0
LYD2_k127_3849686_11 - - - - 0.000000000000000000000000107 113.0
LYD2_k127_3849686_12 - - - - 0.0000000000000000000000006509 108.0
LYD2_k127_3849686_13 - - - - 0.0000000000000000000005612 100.0
LYD2_k127_3849686_14 - K06950 - - 0.000000000000000001214 89.0
LYD2_k127_3849686_15 - - - - 0.00000000002542 65.0
LYD2_k127_3849686_16 - - - - 0.000000001079 63.0
LYD2_k127_3849686_2 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 602.0
LYD2_k127_3849686_3 4 iron, 4 sulfur cluster binding K02574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 563.0
LYD2_k127_3849686_4 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 526.0
LYD2_k127_3849686_5 Sulfatase-modifying factor enzyme 1 K20333 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 495.0
LYD2_k127_3849686_6 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 285.0
LYD2_k127_3849686_7 Cytochrome C and Quinol oxidase polypeptide I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005981 241.0
LYD2_k127_3849686_8 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000002602 200.0
LYD2_k127_3849686_9 - - - - 0.00000000000000000000000000000000000000000000004114 173.0
LYD2_k127_3874106_0 Domain of unknown function (DUF1926) K22451 - 2.4.1.25 6.191e-281 877.0
LYD2_k127_3874106_1 PFAM ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 330.0
LYD2_k127_3894638_0 ABC transporter C-terminal domain K15738 - - 0.0 1061.0
LYD2_k127_3894638_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0 1015.0
LYD2_k127_3894638_10 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 380.0
LYD2_k127_3894638_11 ZIP Zinc transporter K16267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 362.0
LYD2_k127_3894638_12 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003739 340.0
LYD2_k127_3894638_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 293.0
LYD2_k127_3894638_14 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000002831 245.0
LYD2_k127_3894638_15 Ribosomal protein L9, N-terminal domain K02939 - - 0.0000000000000000000000000000000000000000000000000000000000000004771 224.0
LYD2_k127_3894638_16 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000000000000000000001188 171.0
LYD2_k127_3894638_17 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000003 174.0
LYD2_k127_3894638_18 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000000000000000000001304 157.0
LYD2_k127_3894638_19 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000001323 145.0
LYD2_k127_3894638_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0 1002.0
LYD2_k127_3894638_20 DNA replication, synthesis of RNA primer K02686 - - 0.00000000000000000000000001979 111.0
LYD2_k127_3894638_21 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000004959 69.0
LYD2_k127_3894638_22 OmpA-like transmembrane domain - - - 0.0001078 52.0
LYD2_k127_3894638_3 Sugar (and other) transporter - - - 1.209e-246 771.0
LYD2_k127_3894638_4 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 2.197e-245 763.0
LYD2_k127_3894638_5 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438 629.0
LYD2_k127_3894638_6 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 571.0
LYD2_k127_3894638_7 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 538.0
LYD2_k127_3894638_8 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 467.0
LYD2_k127_3894638_9 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 445.0
LYD2_k127_3905498_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 1.349e-302 940.0
LYD2_k127_3905498_1 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 465.0
LYD2_k127_3905498_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 322.0
LYD2_k127_3905498_3 Nitroreductase family - - - 0.00000000000004588 82.0
LYD2_k127_3945603_0 aminoacyl-histidine dipeptidase K01270 - - 1.036e-235 738.0
LYD2_k127_3945603_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 456.0
LYD2_k127_3945603_10 - - - - 0.000000000000000000000000000000000000000003218 157.0
LYD2_k127_3945603_11 - - - - 0.000000000000000000255 90.0
LYD2_k127_3945603_2 Natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 452.0
LYD2_k127_3945603_3 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 437.0
LYD2_k127_3945603_4 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 422.0
LYD2_k127_3945603_5 PFAM nitroreductase K09019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 337.0
LYD2_k127_3945603_6 YaeQ - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 329.0
LYD2_k127_3945603_7 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 288.0
LYD2_k127_3945603_8 Ankyrin repeats (many copies) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001183 256.0
LYD2_k127_3945603_9 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000002005 184.0
LYD2_k127_3958930_0 major facilitator superfamily K03446 - - 6.569e-256 796.0
LYD2_k127_3958930_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 559.0
LYD2_k127_3958930_2 PFAM secretion protein HlyD family protein K03543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 377.0
LYD2_k127_3958930_3 - - - - 0.000000000000000000000000005006 120.0
LYD2_k127_3982458_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 2.25e-276 855.0
LYD2_k127_3982458_1 Ammonium Transporter Family K03320 - - 8.28e-252 783.0
LYD2_k127_3982458_2 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 2.379e-197 618.0
LYD2_k127_3982458_3 Belongs to the DEAD box helicase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005911 269.0
LYD2_k127_3982458_4 Bacterial protein of unknown function (Gcw_chp) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001357 270.0
LYD2_k127_3982458_5 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003184 258.0
LYD2_k127_3982458_6 Belongs to the P(II) protein family K04752 - - 0.0000000000000000000000000000000000000000000000000000000006816 203.0
LYD2_k127_3982458_7 Membrane fusogenic activity K09806 - - 0.0000000000000000000000003454 106.0
LYD2_k127_3982458_8 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000003585 75.0
LYD2_k127_3998141_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 4.412e-312 962.0
LYD2_k127_3998141_1 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 313.0
LYD2_k127_3998141_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 298.0
LYD2_k127_3998141_3 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003529 269.0
LYD2_k127_3998141_4 PFAM PEGA domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001075 257.0
LYD2_k127_3998141_5 Chemoreceptor zinc-binding domain - - - 0.0000000000000000000000000000000000000000000009311 169.0
LYD2_k127_4078395_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.0 1028.0
LYD2_k127_4078395_1 DAHP synthetase I family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009286 503.0
LYD2_k127_4078395_2 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000003136 106.0
LYD2_k127_4078395_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000004386 66.0
LYD2_k127_4081043_0 CoA-binding domain protein K09181 - - 0.0 1453.0
LYD2_k127_4083743_0 Mur ligase family, catalytic domain K01924 - 6.3.2.8 5.305e-243 757.0
LYD2_k127_4083743_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 9.327e-218 686.0
LYD2_k127_4083743_10 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000001361 181.0
LYD2_k127_4083743_11 POTRA domain, FtsQ-type - - - 0.000000000000000000000000000000000000000000000001293 182.0
LYD2_k127_4083743_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 1.141e-201 636.0
LYD2_k127_4083743_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 1.645e-198 629.0
LYD2_k127_4083743_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 605.0
LYD2_k127_4083743_5 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 576.0
LYD2_k127_4083743_6 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 561.0
LYD2_k127_4083743_7 D-ala D-ala ligase N-terminus K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 488.0
LYD2_k127_4083743_8 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 463.0
LYD2_k127_4083743_9 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 438.0
LYD2_k127_410838_0 PFAM Dihaem cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 283.0
LYD2_k127_410838_1 Cytochrome b/b6/petB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001024 264.0
LYD2_k127_410838_2 - - - - 0.000000000000000000000000000000000000000000000006465 179.0
LYD2_k127_410838_3 Domain of unknown function (DUF1924) - - - 0.0000000000000000000000000000000000000000000008123 169.0
LYD2_k127_410838_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000004241 93.0
LYD2_k127_4210974_0 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 1.434e-311 968.0
LYD2_k127_4210974_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 287.0
LYD2_k127_4210974_2 Belongs to the NiFe NiFeSe hydrogenase large subunit family K05922 - 1.12.5.1 0.0000000000000000000000000000000000000000000000005796 175.0
LYD2_k127_4210974_3 HupE / UreJ protein K03192 - - 0.000000000000000000000000000000000000000000006938 169.0
LYD2_k127_4210974_4 - - - - 0.00002779 53.0
LYD2_k127_4225178_0 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007782 482.0
LYD2_k127_4225178_1 Nad-dependent epimerase dehydratase K00091,K01784 - 1.1.1.219,5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 463.0
LYD2_k127_4225178_10 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 325.0
LYD2_k127_4225178_11 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 296.0
LYD2_k127_4225178_12 TIGRFAM DNA-3-methyladenine glycosylase I K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 288.0
LYD2_k127_4225178_13 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 286.0
LYD2_k127_4225178_14 lipoprotein transporter activity K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001059 255.0
LYD2_k127_4225178_15 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001631 255.0
LYD2_k127_4225178_16 Transcriptional regulator K16137 - - 0.00000000000000000000000000000000000000000000000000000000000000000002771 238.0
LYD2_k127_4225178_17 AraC-like ligand binding domain - - - 0.0000000000000000000000000000000000000000000000000000000003573 205.0
LYD2_k127_4225178_18 SMART CoA-binding domain protein K06929 - - 0.0000000000000000000000000000000000000000000000000000000007391 205.0
LYD2_k127_4225178_19 Glutathione-dependent formaldehyde-activating enzyme family protein 4 - - - 0.000000000000000000000000000000000000000000000000000000005613 201.0
LYD2_k127_4225178_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 454.0
LYD2_k127_4225178_20 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000003489 187.0
LYD2_k127_4225178_21 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000001531 178.0
LYD2_k127_4225178_22 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000000000000004743 168.0
LYD2_k127_4225178_23 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000001676 169.0
LYD2_k127_4225178_24 4-Oxalocrotonate Tautomerase - - - 0.00000000000000000000000000000000000000008066 156.0
LYD2_k127_4225178_25 Cupin domain - - - 0.000000000000000000000000000000000000001799 151.0
LYD2_k127_4225178_26 acetyltransferase - - - 0.0000000000000000000000000000000000000842 147.0
LYD2_k127_4225178_27 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000001825 160.0
LYD2_k127_4225178_28 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000003595 149.0
LYD2_k127_4225178_29 ATPase (P-type) K01535 - 3.6.3.6 0.0000000000000000000000000000004809 122.0
LYD2_k127_4225178_3 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 413.0
LYD2_k127_4225178_30 Belongs to the sulfur carrier protein TusA family K04085 - - 0.000000000000000000000000001173 113.0
LYD2_k127_4225178_31 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000003184 114.0
LYD2_k127_4225178_32 YCII-related domain K09780 - - 0.00000000000000000000001383 102.0
LYD2_k127_4225178_33 - - - - 0.0000000000000000000000419 104.0
LYD2_k127_4225178_34 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.00000000000005207 78.0
LYD2_k127_4225178_35 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000003093 83.0
LYD2_k127_4225178_37 - - - - 0.00002933 56.0
LYD2_k127_4225178_4 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 401.0
LYD2_k127_4225178_5 PFAM Methylated-DNA- protein -cysteine S-methyltransferase DNA binding K00567,K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006779 385.0
LYD2_k127_4225178_6 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 389.0
LYD2_k127_4225178_7 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 361.0
LYD2_k127_4225178_8 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 345.0
LYD2_k127_4225178_9 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 329.0
LYD2_k127_42491_0 PFAM Carbamoyl-phosphate synthase L chain ATP-binding K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 1.118e-280 866.0
LYD2_k127_42491_1 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 1.44e-216 680.0
LYD2_k127_42491_2 Ribosomal protein L11 methyltransferase (PrmA) K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 424.0
LYD2_k127_42491_3 The glycine cleavage system catalyzes the degradation of glycine K00605 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 386.0
LYD2_k127_42491_4 Protein of unknown function (DUF3426) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001498 238.0
LYD2_k127_42491_5 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000001896 231.0
LYD2_k127_42491_6 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000000000000001029 221.0
LYD2_k127_4250947_0 of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 431.0
LYD2_k127_4250947_2 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.0000000000000000000000004339 109.0
LYD2_k127_4250947_3 Outer membrane efflux protein - - - 0.0000000001513 63.0
LYD2_k127_4297339_0 Hsp90 protein K04079 - - 0.0 1108.0
LYD2_k127_4297339_1 MacB-like periplasmic core domain K02004 - - 2.971e-200 629.0
LYD2_k127_4297339_2 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 400.0
LYD2_k127_4297339_3 PFAM response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 342.0
LYD2_k127_4297339_4 PAS domain containing protein K07315,K07675 - 2.7.13.3,3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 304.0
LYD2_k127_4297339_5 - - - - 0.00000000000000000000000000002243 121.0
LYD2_k127_4297339_6 mRNA binding - - - 0.0000000000000000000000005558 106.0
LYD2_k127_4312175_0 TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 596.0
LYD2_k127_4312175_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 582.0
LYD2_k127_4346412_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 410.0
LYD2_k127_4346412_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 379.0
LYD2_k127_4346412_2 Inhibitor of apoptosis-promoting Bax1 K19416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 375.0
LYD2_k127_4346412_3 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 336.0
LYD2_k127_4346412_4 Protein of unknown function (DUF2937) - - - 0.000000000000000000000000000000000000000000000000000000000000000006691 229.0
LYD2_k127_4346412_5 PFAM HopJ type III effector protein - - - 0.0000000000000000000000000000000000000000000000002908 179.0
LYD2_k127_4346412_7 - - - - 0.0007364 48.0
LYD2_k127_4355319_0 MacB-like periplasmic core domain K02004 - - 9.311e-219 692.0
LYD2_k127_4355319_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 556.0
LYD2_k127_4355319_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006494 367.0
LYD2_k127_4355319_3 - - - - 0.0000000000000002066 87.0
LYD2_k127_4421158_0 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009224 525.0
LYD2_k127_4421158_1 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 436.0
LYD2_k127_4421158_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007006 318.0
LYD2_k127_4421158_3 Lysin motif K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000414 284.0
LYD2_k127_4421158_4 Cytochrome b/b6/petB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004873 257.0
LYD2_k127_4421158_5 PFAM Dihaem cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006388 253.0
LYD2_k127_4421158_6 - - - - 0.0000000000000000000000000000000000000000000000000000001783 201.0
LYD2_k127_4421158_7 Domain of unknown function (DUF1924) - - - 0.00000000000000000000000000000000000000000000000001697 183.0
LYD2_k127_4421158_8 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000008001 89.0
LYD2_k127_4449005_0 Domain of unknown function (DUF3400) - - - 5e-324 995.0
LYD2_k127_4449005_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000763 434.0
LYD2_k127_4449005_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 370.0
LYD2_k127_4449005_3 PFAM Heptaprenyl diphosphate synthase component I K00805 - 2.5.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002129 269.0
LYD2_k127_4449005_4 NusG domain II - - - 0.00000000001731 67.0
LYD2_k127_4452553_0 nitrite sulfite reductase hemoprotein beta-component ferrodoxin domain protein K00381,K00392 - 1.8.1.2,1.8.7.1 1.7e-306 953.0
LYD2_k127_4452553_1 LysR substrate binding domain K13634 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 477.0
LYD2_k127_4452553_2 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 366.0
LYD2_k127_4452553_3 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004453 352.0
LYD2_k127_4474218_0 TIGRFAM cytochrome c-type biogenesis protein CcmF K02198 - - 1.489e-316 975.0
LYD2_k127_4474218_1 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041 457.0
LYD2_k127_4474218_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 427.0
LYD2_k127_4474218_3 SurA N-terminal domain K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 413.0
LYD2_k127_4474218_4 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008618 340.0
LYD2_k127_4474218_5 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 325.0
LYD2_k127_4474218_6 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000000000000000000009064 219.0
LYD2_k127_4474218_7 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00000000000001639 74.0
LYD2_k127_4495111_0 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 599.0
LYD2_k127_4495111_1 TIGRFAM glycine oxidase ThiO K03153 - 1.4.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007475 464.0
LYD2_k127_4495111_2 PFAM glycoside hydrolase family 8 K01179,K20542 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 352.0
LYD2_k127_4495111_3 PFAM Protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000006285 267.0
LYD2_k127_4497596_0 precorrin-6y C5,15-methyltransferase K00595,K02191 - 2.1.1.132,2.1.1.196 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 550.0
LYD2_k127_4497596_1 CobB/CobQ-like glutamine amidotransferase domain K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 550.0
LYD2_k127_4497596_10 EVE domain - - - 0.000000000000000000002359 95.0
LYD2_k127_4497596_11 - - - - 0.0000000000005972 70.0
LYD2_k127_4497596_12 cobalt transporter - - - 0.00000006482 59.0
LYD2_k127_4497596_2 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009544 472.0
LYD2_k127_4497596_3 Belongs to the precorrin methyltransferase family K05936 - 2.1.1.133,2.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 402.0
LYD2_k127_4497596_4 PFAM cobalamin (vitamin B12) biosynthesis CbiX K03795 - 4.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 404.0
LYD2_k127_4497596_5 Precorrin-8X methylmutase CbiC CobH K06042 - 5.4.99.60,5.4.99.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 349.0
LYD2_k127_4497596_6 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 293.0
LYD2_k127_4497596_7 Tetrapyrrole (Corrin/Porphyrin) Methylases K03394 - 2.1.1.130,2.1.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 290.0
LYD2_k127_4497596_8 cobalt transporter, subunit CbtA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002015 248.0
LYD2_k127_4497596_9 Cell division protein ZapA K09888 - - 0.0000000000000000000000000000000000000000000000007649 176.0
LYD2_k127_4499705_0 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 481.0
LYD2_k127_4499705_1 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 300.0
LYD2_k127_4499705_2 PFAM Helix-turn-helix, type 11 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000252 258.0
LYD2_k127_4499705_3 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000003126 213.0
LYD2_k127_4499705_4 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000002104 183.0
LYD2_k127_4499705_5 ethyl tert-butyl ether degradation - - - 0.00000000000000000000000000000000000000005215 153.0
LYD2_k127_4499705_6 - - - - 0.00000000000000000000000000000000002604 139.0
LYD2_k127_4499705_7 - - - - 0.0000003018 56.0
LYD2_k127_4543742_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1383.0
LYD2_k127_4543742_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 590.0
LYD2_k127_4543742_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000002533 176.0
LYD2_k127_4556498_0 May be involved in recombinational repair of damaged DNA K03631 - - 6.314e-252 793.0
LYD2_k127_4556498_1 Histidine kinase - - - 2.97e-225 726.0
LYD2_k127_4556498_10 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 396.0
LYD2_k127_4556498_11 RimK-like ATPgrasp N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 372.0
LYD2_k127_4556498_12 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 326.0
LYD2_k127_4556498_13 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000841 280.0
LYD2_k127_4556498_14 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008835 276.0
LYD2_k127_4556498_15 COG3038 Cytochrome B561 K12262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001297 246.0
LYD2_k127_4556498_16 DsrE/DsrF-like family K06039 - - 0.00000000000000000000000000000000000000000000003622 173.0
LYD2_k127_4556498_17 diol metabolic process K01724 - 4.2.1.96 0.00000000000000000000000000000000000000000000008899 171.0
LYD2_k127_4556498_18 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.00000000000000000000000000000005507 128.0
LYD2_k127_4556498_19 cytochrome - - - 0.000000000000000000000000006367 114.0
LYD2_k127_4556498_2 Major Facilitator - - - 1.563e-222 699.0
LYD2_k127_4556498_20 Histidine kinase K11617 - 2.7.13.3 0.00000000000000000000000003562 111.0
LYD2_k127_4556498_21 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000001108 111.0
LYD2_k127_4556498_3 CAAX prenyl protease N-terminal, five membrane helices K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 578.0
LYD2_k127_4556498_4 Winged helix-turn-helix transcription repressor, HrcA DNA-binding K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 557.0
LYD2_k127_4556498_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008485 424.0
LYD2_k127_4556498_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 414.0
LYD2_k127_4556498_7 glycosyl - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 416.0
LYD2_k127_4556498_8 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 399.0
LYD2_k127_4556498_9 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 392.0
LYD2_k127_4600923_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 1.77e-208 652.0
LYD2_k127_4600923_1 NUDIX domain K08310 - 3.6.1.67 0.000000000000000000000000000000000000000000000000000000000000000103 224.0
LYD2_k127_4600923_2 PFAM guanine-specific ribonuclease N1 and T1 K01167 - 3.1.27.3 0.000000000000000000000000000000000000000000000133 170.0
LYD2_k127_4600923_3 Barstar (barnase inhibitor) - - - 0.000000000000000000000000000000000000000001212 159.0
LYD2_k127_4628776_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 2.176e-316 972.0
LYD2_k127_4628776_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 3.53e-257 798.0
LYD2_k127_4628776_2 Phosphoribulokinase / Uridine kinase family K00855 - 2.7.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007435 533.0
LYD2_k127_4628776_3 pfkB family carbohydrate kinase K00852,K00856 - 2.7.1.15,2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 398.0
LYD2_k127_4628776_4 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.0000000000000000000000000000000000000000000000000003362 188.0
LYD2_k127_463781_0 Molybdopterin oxidoreductase Fe4S4 domain K02567 - - 2.992e-288 895.0
LYD2_k127_463781_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 439.0
LYD2_k127_463781_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005851 242.0
LYD2_k127_463781_3 Domain of unknown function (DUF4357) - - - 0.0000000000000000000000000000000000000000000000000000000000000000006444 231.0
LYD2_k127_463781_4 Nitrate reductase cytochrome c-type subunit (NapB) K02568 - - 0.0000000000000000000000000002815 120.0
LYD2_k127_4653839_0 MscS Mechanosensitive ion channel - - - 1.063e-237 744.0
LYD2_k127_4653839_1 TIGRFAM lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 9.276e-199 632.0
LYD2_k127_4653839_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 284.0
LYD2_k127_4653839_3 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001006 281.0
LYD2_k127_4653839_4 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.00000000000000000000003473 100.0
LYD2_k127_4659470_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 571.0
LYD2_k127_4659470_1 cytochrome c biogenesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 537.0
LYD2_k127_4659470_2 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 435.0
LYD2_k127_4659470_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002096 276.0
LYD2_k127_4659470_4 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000016 259.0
LYD2_k127_4669797_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 4.85e-202 637.0
LYD2_k127_4669797_1 PFAM NAD-dependent epimerase dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 338.0
LYD2_k127_4669797_2 The glycine cleavage system catalyzes the degradation of glycine K00605 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 298.0
LYD2_k127_4669797_3 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000005961 249.0
LYD2_k127_4669797_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000000000001039 227.0
LYD2_k127_4712911_0 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 453.0
LYD2_k127_4712911_1 Short-chain dehydrogenase reductase (SDR) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 414.0
LYD2_k127_4712911_10 Putative zinc- or iron-chelating domain - - - 0.0000000000000000000000000000000000004912 144.0
LYD2_k127_4712911_11 PFAM heat shock protein DnaJ domain protein - - - 0.000000000000000000000000000000023 130.0
LYD2_k127_4712911_12 Domain of unknown function (DUF4381) - - - 0.00000000000000000000000000005189 122.0
LYD2_k127_4712911_13 associated with various cellular activities K03924 - - 0.0000000000000001655 79.0
LYD2_k127_4712911_14 - - - - 0.0000000000000005346 81.0
LYD2_k127_4712911_15 Mate efflux family protein K03327 - - 0.000000000000003885 76.0
LYD2_k127_4712911_16 - - - - 0.00000000002089 68.0
LYD2_k127_4712911_2 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004321 405.0
LYD2_k127_4712911_3 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 375.0
LYD2_k127_4712911_6 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 317.0
LYD2_k127_4712911_7 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 314.0
LYD2_k127_4712911_8 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001333 279.0
LYD2_k127_4741363_0 transport system periplasmic component K01989 - - 0.00000000000000000000000000000000000000000000000000000479 203.0
LYD2_k127_4741363_1 PFAM GCN5-related N-acetyltransferase K22441 - 2.3.1.57 0.0000000000000000000000000000000000000000000000000003763 191.0
LYD2_k127_4741363_2 NifQ K15790 - - 0.0000000000000000000000000000000000000000000136 169.0
LYD2_k127_4741363_3 Histidine kinase - - - 0.000008409 48.0
LYD2_k127_4741836_0 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 536.0
LYD2_k127_4741836_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 329.0
LYD2_k127_4741836_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000001126 205.0
LYD2_k127_4741836_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000452 203.0
LYD2_k127_4751312_0 PFAM Type II secretion system F domain K02653 - - 4.447e-200 629.0
LYD2_k127_4751312_1 Domain of unknown function DUF21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 610.0
LYD2_k127_4751312_10 Bacterial regulatory protein, Fis family K03557 - - 0.000000000000000000000000000000000002772 139.0
LYD2_k127_4751312_11 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000000000000002993 91.0
LYD2_k127_4751312_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004553 579.0
LYD2_k127_4751312_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 542.0
LYD2_k127_4751312_4 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 451.0
LYD2_k127_4751312_5 PFAM AICARFT IMPCHase bienzyme formylation region K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 402.0
LYD2_k127_4751312_6 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000534 376.0
LYD2_k127_4751312_7 Thiamine monophosphate synthase K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003846 374.0
LYD2_k127_4751312_8 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 317.0
LYD2_k127_4751312_9 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000009263 219.0
LYD2_k127_4814276_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 8.685e-282 875.0
LYD2_k127_4814276_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14392 - - 1.51e-260 806.0
LYD2_k127_4814276_10 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 353.0
LYD2_k127_4814276_11 Nitroreductase family K02303,K04719 - 1.13.11.79,2.1.1.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 299.0
LYD2_k127_4814276_12 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008818,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.8.26 0.000000000000000000000000000000000000000000000000000000000000000008081 241.0
LYD2_k127_4814276_13 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.00000000000000000000000000000000000000000000000000002799 193.0
LYD2_k127_4814276_14 Response regulator receiver K02658 - - 0.000000000000000000000000000000000000000000000000000371 186.0
LYD2_k127_4814276_15 Phosphoglycerate mutase family K02226,K15634 - 3.1.3.73,5.4.2.12 0.0000000000000000000000000000000000000000000000000009858 196.0
LYD2_k127_4814276_16 Cobalamin synthesis G C-terminus K02189 - 3.7.1.12 0.00000000000000000000000000000000000000000000000001942 182.0
LYD2_k127_4814276_17 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000009299 163.0
LYD2_k127_4814276_18 Tetrapyrrole (Corrin/Porphyrin) Methylases K03394 - 2.1.1.130,2.1.1.151 0.000000000000000000000000000000000000001441 148.0
LYD2_k127_4814276_19 CheW-like domain - - - 0.000000000000000000000000000000002062 136.0
LYD2_k127_4814276_2 response regulator receiver - - - 3.239e-240 781.0
LYD2_k127_4814276_20 - - - - 0.00000000000000000000004889 104.0
LYD2_k127_4814276_3 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.5.10 6.504e-232 728.0
LYD2_k127_4814276_4 Tetrapyrrole (Corrin/Porphyrin) Methylases K05934 - 2.1.1.131 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 508.0
LYD2_k127_4814276_5 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007613 440.0
LYD2_k127_4814276_6 chemotaxis, protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 452.0
LYD2_k127_4814276_7 PFAM aminotransferase, class I K02225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 402.0
LYD2_k127_4814276_8 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 373.0
LYD2_k127_4814276_9 PFAM cobalamin (vitamin B12) biosynthesis CbiG protein K02189 - 3.7.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 357.0
LYD2_k127_4817423_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 457.0
LYD2_k127_4817423_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 332.0
LYD2_k127_4817423_2 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000008595 216.0
LYD2_k127_4817423_3 DsrC like protein K11179 - - 0.000000000000000000000000000000000000000000000000000002827 191.0
LYD2_k127_4817423_4 - - - - 0.000000000000000000000000000002429 126.0
LYD2_k127_4817423_5 - - - - 0.00000000000000000001614 93.0
LYD2_k127_4817423_6 Protein of unknown function (DUF2621) - - - 0.0000001982 60.0
LYD2_k127_4920600_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0 1129.0
LYD2_k127_4920600_1 - - - - 0.000000000000000000000000000000000001439 141.0
LYD2_k127_4920600_2 amino acid - - - 0.00000005275 54.0
LYD2_k127_4932924_0 Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides K10012 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004986 468.0
LYD2_k127_4932924_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 443.0
LYD2_k127_4932924_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002414 283.0
LYD2_k127_494034_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 2.679e-236 733.0
LYD2_k127_494034_1 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 422.0
LYD2_k127_494034_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001878 276.0
LYD2_k127_494034_3 Transcriptional regulator K13643 - - 0.000000000000000000000000000000000000000000000000000000000004152 211.0
LYD2_k127_494034_4 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000003385 108.0
LYD2_k127_4942546_0 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 528.0
LYD2_k127_4942546_1 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 381.0
LYD2_k127_4942546_2 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005234 366.0
LYD2_k127_4942546_3 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000005517 174.0
LYD2_k127_4942546_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000007675 163.0
LYD2_k127_4942546_5 NlpB/DapX lipoprotein K07287 - - 0.000000000000000000000000000284 124.0
LYD2_k127_4942546_6 PFAM isochorismatase hydrolase - - - 0.00000000000000000000006988 100.0
LYD2_k127_4942546_7 FeoA K04758 - - 0.0000000000000000000003465 104.0
LYD2_k127_4942546_8 Belongs to the 'phage' integrase family - - - 0.000000000001245 73.0
LYD2_k127_4991779_0 PFAM type II and III secretion system protein K02453,K12282 - - 2.035e-208 662.0
LYD2_k127_4991779_1 AAA domain K02450,K12283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 475.0
LYD2_k127_4991779_2 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 391.0
LYD2_k127_4991779_3 Pilus assembly protein K12279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 360.0
LYD2_k127_4991779_4 Tetratricopeptide repeat K12284 - - 0.000000000000000000000000000000000000000000000000000000000000000008367 242.0
LYD2_k127_4991779_5 carbon utilization K12280 - - 0.00000000000000000000000000000000000000000000000000000000001151 213.0
LYD2_k127_4991779_6 Fimbrial assembly protein (PilN) - - - 0.000000000000000000000000000000000000000000000000000000000725 211.0
LYD2_k127_4991779_7 Dinitrogenase reductase K05951 - 2.4.2.37 0.00000000000000000000000000000000000000000002069 164.0
LYD2_k127_4991779_8 - K12281 - - 0.000000000000000818 85.0
LYD2_k127_5091598_0 Methyl-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 508.0
LYD2_k127_5091598_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 516.0
LYD2_k127_5091598_2 PFAM lipolytic protein G-D-S-L family K01073 - 3.1.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 293.0
LYD2_k127_5091598_3 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014,K16089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000563 261.0
LYD2_k127_5091598_4 Phage derived protein Gp49-like (DUF891) - - - 0.000000000000000000000000000000000000000002238 157.0
LYD2_k127_5091598_5 DNA helicase - - - 0.000000000000000000000000000000001079 132.0
LYD2_k127_5091598_6 Helix-turn-helix motif - - - 0.000000000000000000000000000001186 124.0
LYD2_k127_5091598_7 - - - - 0.000000000000000000001594 101.0
LYD2_k127_5091598_8 - - - - 0.0000000000000000001145 96.0
LYD2_k127_510091_0 Threonyl and Alanyl tRNA synthetase second additional domain K01868 - 6.1.1.3 0.0 1182.0
LYD2_k127_510091_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 7.891e-306 948.0
LYD2_k127_510091_2 Belongs to the glucose-6-phosphate 1-epimerase family K01792 - 5.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008612 460.0
LYD2_k127_510091_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 308.0
LYD2_k127_510091_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000000000000000531 110.0
LYD2_k127_5101138_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 1.299e-303 943.0
LYD2_k127_5101138_1 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 510.0
LYD2_k127_5101138_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000272 155.0
LYD2_k127_5101138_3 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000001074 91.0
LYD2_k127_5142461_0 B12 binding domain - - - 0.0 1029.0
LYD2_k127_5142461_1 MMPL family - - - 9.4e-323 1004.0
LYD2_k127_5142461_10 pteridine-dependent deoxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 436.0
LYD2_k127_5142461_11 Glycosyl transferase family 2 K00786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 432.0
LYD2_k127_5142461_12 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003684 411.0
LYD2_k127_5142461_13 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 397.0
LYD2_k127_5142461_14 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 395.0
LYD2_k127_5142461_15 Bacterial lipid A biosynthesis acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 390.0
LYD2_k127_5142461_16 MltA-interacting protein MipA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 369.0
LYD2_k127_5142461_17 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 361.0
LYD2_k127_5142461_18 Polysaccharide deacetylase K01452 - 3.5.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 332.0
LYD2_k127_5142461_19 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007367 275.0
LYD2_k127_5142461_2 Beta-lactamase - - - 6.063e-299 925.0
LYD2_k127_5142461_20 Serine hydrolase involved in the detoxification of formaldehyde - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007918 261.0
LYD2_k127_5142461_21 MarR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001836 244.0
LYD2_k127_5142461_22 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001449 233.0
LYD2_k127_5142461_23 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000000000000000000000000000003279 209.0
LYD2_k127_5142461_24 OmpA family K03640 - - 0.00000000000000000000000000000000000000000000002406 174.0
LYD2_k127_5142461_25 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000000001345 162.0
LYD2_k127_5142461_26 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000000000000006862 146.0
LYD2_k127_5142461_27 Phosphopantetheine attachment site K02078 - - 0.00000000000000000000000000000000000001084 149.0
LYD2_k127_5142461_28 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000006337 128.0
LYD2_k127_5142461_29 FabA-like domain - - - 0.0000000000000000000000000008392 115.0
LYD2_k127_5142461_3 fad dependent oxidoreductase - - - 2.606e-220 689.0
LYD2_k127_5142461_30 FMN binding - - - 0.0000000000000000006944 91.0
LYD2_k127_5142461_4 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K00648 - 2.3.1.180 6.093e-212 661.0
LYD2_k127_5142461_5 Sodium/hydrogen exchanger family - - - 3.25e-210 658.0
LYD2_k127_5142461_6 Chloride channel - - - 4.061e-210 660.0
LYD2_k127_5142461_7 AMP-binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 595.0
LYD2_k127_5142461_8 Domain of unknown function (DUF4872) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 563.0
LYD2_k127_5142461_9 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 509.0
LYD2_k127_5154037_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 9.117e-216 673.0
LYD2_k127_5154037_1 Peptidase family M23 K08259 - 3.4.24.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 322.0
LYD2_k127_5154037_2 Protein conserved in bacteria - - - 0.00000000000003429 78.0
LYD2_k127_5154037_3 - - - - 0.00000000000009133 72.0
LYD2_k127_5166699_0 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 528.0
LYD2_k127_5166699_1 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000001568 160.0
LYD2_k127_5166699_2 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 0.0000000000000000000003046 97.0
LYD2_k127_5166699_4 - - - - 0.000000000004769 79.0
LYD2_k127_5166699_7 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 0.00005418 46.0
LYD2_k127_5180328_0 HELICc2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 600.0
LYD2_k127_5180328_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000459 271.0
LYD2_k127_5190614_0 AAA domain K16898 - 3.6.4.12 0.0 1665.0
LYD2_k127_5190614_1 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.0 1334.0
LYD2_k127_5190614_10 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.000000000000000000000000006167 110.0
LYD2_k127_5190614_11 mRNA binding K07339 - - 0.00000000000000000000000001032 110.0
LYD2_k127_5190614_12 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000003433 69.0
LYD2_k127_5190614_13 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000006573 68.0
LYD2_k127_5190614_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 7.191e-280 865.0
LYD2_k127_5190614_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 606.0
LYD2_k127_5190614_4 PFAM Mur ligase middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003428 609.0
LYD2_k127_5190614_5 Domain of unknown function (DUF4442) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001044 256.0
LYD2_k127_5190614_6 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000000000000000000000005627 179.0
LYD2_k127_5190614_7 Colicin V production protein K03558 - - 0.000000000000000000000000000000000000000001696 161.0
LYD2_k127_5190614_8 Sporulation related domain K03749 - - 0.000000000000000000000000000000000000000008148 161.0
LYD2_k127_5190614_9 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000001006 130.0
LYD2_k127_5223513_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1105.0
LYD2_k127_5223513_1 Cysteine-rich domain - - - 2.353e-291 898.0
LYD2_k127_5223513_10 DsrE/DsrF-like family K07236 - - 0.0000000000000000000000000000000000000000000000000000000003713 204.0
LYD2_k127_5223513_11 - - - - 0.0000000000000000000000000000000000000000001932 165.0
LYD2_k127_5223513_12 DsrH like protein K07237 - - 0.00000000000000000000000000000000000001547 146.0
LYD2_k127_5223513_13 TIGRFAM sulfur relay protein, TusE DsrC DsvC family K11179 - - 0.000000237 53.0
LYD2_k127_5223513_2 AAA domain K02224 - 6.3.5.11,6.3.5.9 1.742e-227 713.0
LYD2_k127_5223513_3 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 9.133e-210 657.0
LYD2_k127_5223513_4 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 595.0
LYD2_k127_5223513_5 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 581.0
LYD2_k127_5223513_6 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 370.0
LYD2_k127_5223513_7 Nitrate reductase gamma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 353.0
LYD2_k127_5223513_8 DsrE/DsrF-like family K07235 - - 0.000000000000000000000000000000000000000000000000000000000000000006641 226.0
LYD2_k127_5223513_9 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000000000000000001949 203.0
LYD2_k127_5227285_0 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006834 501.0
LYD2_k127_5227285_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 479.0
LYD2_k127_5227285_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 461.0
LYD2_k127_5227285_3 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 371.0
LYD2_k127_5227285_4 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 330.0
LYD2_k127_5235485_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 4.167e-217 676.0
LYD2_k127_5235485_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005973 515.0
LYD2_k127_5235485_4 PFAM Band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 303.0
LYD2_k127_5235485_5 Acyl carrier protein phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000136 269.0
LYD2_k127_5235485_6 LPP20 lipoprotein - - - 0.0000000000000000000000000000000000000000000000002222 184.0
LYD2_k127_5235485_7 Preprotein translocase subunit K03210 - - 0.0000000000000000000000000000000000000000006941 159.0
LYD2_k127_5235485_8 - - - - 0.000000000001462 80.0
LYD2_k127_5235485_9 FecR protein - - - 0.000000000006841 75.0
LYD2_k127_5242320_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0 1377.0
LYD2_k127_5242320_1 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005161 567.0
LYD2_k127_5242320_2 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007688 332.0
LYD2_k127_5242320_3 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000007874 214.0
LYD2_k127_5242320_4 Thioredoxin K05838 - - 0.00000000000000000000000000000000000000000000000000000003949 198.0
LYD2_k127_5242320_5 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000000000000000000000000001629 154.0
LYD2_k127_5242320_6 Tautomerase enzyme - - - 0.0000000000000000000000000000000000003086 144.0
LYD2_k127_5242320_7 - - - - 0.00000000003634 68.0
LYD2_k127_5248281_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 6.588e-195 611.0
LYD2_k127_5248281_1 PFAM ATP-binding region ATPase domain protein K15011 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006666 537.0
LYD2_k127_5248281_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002606 421.0
LYD2_k127_5248281_3 Bacterial regulatory protein, Fis family K15012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000109 274.0
LYD2_k127_5248281_4 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001111 273.0
LYD2_k127_5267486_0 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006614 480.0
LYD2_k127_5267486_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 350.0
LYD2_k127_5267486_2 Carbonic anhydrase K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000007825 248.0
LYD2_k127_5267486_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000002126 73.0
LYD2_k127_5267486_4 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000006093 48.0
LYD2_k127_5267486_5 cellulose binding - - - 0.0000095 55.0
LYD2_k127_5292705_0 (GGDEF) domain - - - 8.651e-209 682.0
LYD2_k127_5292705_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006955 468.0
LYD2_k127_5292705_2 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 370.0
LYD2_k127_5295689_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.203e-299 925.0
LYD2_k127_5295689_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 394.0
LYD2_k127_5295689_2 Pyridoxamine 5'-phosphate oxidase K07226 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 357.0
LYD2_k127_5295689_3 PFAM Ig domain protein group 1 domain protein - - - 0.0000000000000000000000000000000000000000000000005759 199.0
LYD2_k127_5316363_0 phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 584.0
LYD2_k127_5316363_1 Zinc-uptake complex component A periplasmic K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007986 418.0
LYD2_k127_5316363_2 ABC 3 transport family K02075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004062 328.0
LYD2_k127_5316363_3 Caspase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006474 290.0
LYD2_k127_5316363_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000002579 91.0
LYD2_k127_5322247_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008642 537.0
LYD2_k127_5322247_1 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000007568 238.0
LYD2_k127_5322247_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000004898 152.0
LYD2_k127_5416187_0 FAD dependent oxidoreductase K00313 - - 2.58e-229 715.0
LYD2_k127_5416187_1 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 553.0
LYD2_k127_5416187_10 - - - - 0.0000000000000008676 81.0
LYD2_k127_5416187_2 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 481.0
LYD2_k127_5416187_3 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 422.0
LYD2_k127_5416187_4 PFAM porin Gram-negative type - - - 0.0000000000000000000000000000000000000000000000000000000000001799 220.0
LYD2_k127_5416187_5 - - - - 0.00000000000000000000000000000000000000000000000000000002278 202.0
LYD2_k127_5416187_6 Could be a 3Fe-4S cluster-containing protein K03855 - - 0.00000000000000000000000000000000000000000000002987 171.0
LYD2_k127_5416187_7 Ferredoxin - - - 0.00000000000000000000000000000000000000000002218 163.0
LYD2_k127_5416187_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000002647 166.0
LYD2_k127_5416187_9 May protect the nitrogenase Fe-Mo protein from oxidative damage K02595 - - 0.00000000000000000000000001675 113.0
LYD2_k127_5421035_0 PFAM phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 3.349e-298 920.0
LYD2_k127_5421035_1 PFAM peptidase M3A and M3B thimet oligopeptidase F K01414 - 3.4.24.70 6.759e-245 762.0
LYD2_k127_5421035_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 592.0
LYD2_k127_5421035_3 S4 RNA-binding domain K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 395.0
LYD2_k127_5421035_4 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 366.0
LYD2_k127_5421035_5 UPF0056 inner membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 305.0
LYD2_k127_5421035_6 Pfam Glutaredoxin - - - 0.000000000000000000000000000000000000005149 151.0
LYD2_k127_5421035_7 PFAM Excinuclease ABC C subunit domain protein K07461 - - 0.000000000000000000000000000000000004245 139.0
LYD2_k127_5454112_0 AcrB/AcrD/AcrF family - - - 0.0 1474.0
LYD2_k127_5454112_1 PFAM peptidase M17 leucyl aminopeptidase domain protein K01255 - 3.4.11.1 7.638e-253 786.0
LYD2_k127_5454112_10 Virulence factor membrane-bound polymerase, C-terminal - - - 0.00000002817 55.0
LYD2_k127_5454112_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 526.0
LYD2_k127_5454112_3 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
LYD2_k127_5454112_4 protein conserved in bacteria containing a divergent form of TPR repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 305.0
LYD2_k127_5454112_5 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000007572 268.0
LYD2_k127_5454112_6 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000008005 185.0
LYD2_k127_5454112_7 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000001106 156.0
LYD2_k127_5454112_8 Protein of unknown function (DUF2892) - - - 0.000000000000000000000000006658 111.0
LYD2_k127_5454112_9 PFAM Tetratricopeptide repeat K07126 - - 0.0000000000000000000004509 102.0
LYD2_k127_5546383_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 6.491e-301 930.0
LYD2_k127_5546383_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 7.144e-210 655.0
LYD2_k127_5546383_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 514.0
LYD2_k127_5546383_3 Glutamate-cysteine ligase K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006361 329.0
LYD2_k127_5546383_4 PFAM PTS system fructose subfamily IIA component K02821 - 2.7.1.194 0.000000000000000000000000000000000000000000000002114 177.0
LYD2_k127_5546383_5 PTS HPr component phosphorylation site K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000004575 140.0
LYD2_k127_5563980_0 Oxidoreductase FAD-binding domain protein K00523,K18248 - 1.17.1.1 7.247e-200 643.0
LYD2_k127_5563980_1 PFAM CHASE2 domain - - - 3.553e-195 614.0
LYD2_k127_5563980_2 Hydrogenase formation hypA family K04654 GO:0003674,GO:0005488,GO:0005506,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0019538,GO:0036211,GO:0042165,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0051604,GO:0070025,GO:0071704,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 594.0
LYD2_k127_5563980_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004254 276.0
LYD2_k127_5563980_4 Hydrogenase maturation protease - - - 0.00000000000000000000000000000000000000000000000007167 181.0
LYD2_k127_5563980_5 TIGRFAM hydrogenase assembly chaperone hypC hupF K04653 - - 0.0000000000000000000000000005233 115.0
LYD2_k127_5563980_6 - - - - 0.000000000000000001469 94.0
LYD2_k127_5583560_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1521.0
LYD2_k127_5583560_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006293 597.0
LYD2_k127_5583560_2 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000004551 150.0
LYD2_k127_5583560_3 Protein of unknown function (DUF1622) - - - 0.0000000006938 64.0
LYD2_k127_5656666_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 1.958e-301 925.0
LYD2_k127_5656666_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 2.724e-247 764.0
LYD2_k127_5656666_2 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 480.0
LYD2_k127_5656666_3 Peptidase family U32 C-terminal domain K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006667 402.0
LYD2_k127_5656666_4 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000000000000000000000000003812 179.0
LYD2_k127_5656666_5 HD domain K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000004629 173.0
LYD2_k127_5656666_6 lipid A biosynthesis lauroyl acyltransferase K02517 - 2.3.1.241 0.00001507 49.0
LYD2_k127_5662706_0 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 419.0
LYD2_k127_5662706_1 - - - - 0.000000000000000000000000000000000000000000000000000000001101 205.0
LYD2_k127_5662706_2 Domain of unknown function (DUF4124) K08309 - - 0.00000000000000000000000000000000000000000004075 168.0
LYD2_k127_5662706_3 Ppx GppA phosphatase - - - 0.000000000000000000000000000000000000009904 151.0
LYD2_k127_5662706_4 Protein of unknown function (DUF2971) - - - 0.000000000000000000002069 106.0
LYD2_k127_5662706_5 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.000000000000000000002285 94.0
LYD2_k127_5662706_7 - - - - 0.00000002209 60.0
LYD2_k127_5662706_8 SMART helix-turn-helix domain protein K18831 - - 0.000002114 51.0
LYD2_k127_5665390_0 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 4.454e-210 674.0
LYD2_k127_5665390_1 PFAM aminotransferase class I and II K14267 - 2.6.1.17 5.713e-208 651.0
LYD2_k127_5665390_10 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000000000000000000000008261 197.0
LYD2_k127_5665390_11 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000009608 191.0
LYD2_k127_5665390_12 Domain of unknown function (DUF4149) - - - 0.000000000000000000000000000000000000000000000000009 184.0
LYD2_k127_5665390_13 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000232 76.0
LYD2_k127_5665390_2 Carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 590.0
LYD2_k127_5665390_3 Domain of unknown function (DUF3393) K08306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 494.0
LYD2_k127_5665390_4 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 359.0
LYD2_k127_5665390_5 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 332.0
LYD2_k127_5665390_6 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000122 275.0
LYD2_k127_5665390_7 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001627 274.0
LYD2_k127_5665390_8 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000005376 207.0
LYD2_k127_5665390_9 Bacterial-like globin - - - 0.0000000000000000000000000000000000000000000000000000000002742 205.0
LYD2_k127_5682311_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 2.137e-275 852.0
LYD2_k127_5682311_1 PFAM permease YjgP YjgQ family protein K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 520.0
LYD2_k127_5682311_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 358.0
LYD2_k127_5682311_3 PFAM permease YjgP YjgQ family protein K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 365.0
LYD2_k127_5682311_4 PFAM DNA polymerase III chi subunit HolC K02339 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000001262 236.0
LYD2_k127_5716417_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.858e-263 817.0
LYD2_k127_5716417_1 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 3.306e-224 698.0
LYD2_k127_5716417_2 TIGRFAM fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 2.489e-222 690.0
LYD2_k127_5716417_3 SMART Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 8.066e-201 627.0
LYD2_k127_5716417_4 PFAM type II secretion system protein E K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009636 512.0
LYD2_k127_5716417_5 LysR substrate binding domain K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008417 461.0
LYD2_k127_5716417_6 Belongs to the RuBisCO large chain family K01601 - 4.1.1.39 0.0000000000000000000000000000000000000000000003577 167.0
LYD2_k127_5716417_7 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000001316 117.0
LYD2_k127_5723807_0 PFAM Isocitrate dehydrogenase NADP-dependent monomeric type K00031 - 1.1.1.42 0.0 1339.0
LYD2_k127_5723807_1 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003251 274.0
LYD2_k127_5734627_0 Soluble lytic murein transglycosylase L domain K08309 - - 2.368e-242 763.0
LYD2_k127_5734627_1 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 9.281e-231 719.0
LYD2_k127_5734627_2 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009697 551.0
LYD2_k127_5734627_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004972 536.0
LYD2_k127_5734627_4 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 431.0
LYD2_k127_5734627_5 KR domain K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 368.0
LYD2_k127_5734627_6 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000198 280.0
LYD2_k127_5734627_7 Uncharacterized protein family, UPF0114 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007958 273.0
LYD2_k127_5734627_8 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000009124 257.0
LYD2_k127_5734627_9 helix_turn_helix, Lux Regulon - - - 0.000000000000000000008136 105.0
LYD2_k127_5736637_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0 1139.0
LYD2_k127_5736637_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 6.47e-322 988.0
LYD2_k127_5736637_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 378.0
LYD2_k127_5736637_11 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009703 302.0
LYD2_k127_5736637_12 TIGRFAM pyruvate ketoisovalerate oxidoreductase, gamma subunit K00172,K18357 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000523 288.0
LYD2_k127_5736637_13 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 289.0
LYD2_k127_5736637_14 DSBA-like thioredoxin domain K03673 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006143 252.0
LYD2_k127_5736637_15 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003164 242.0
LYD2_k127_5736637_16 alpha beta - - - 0.00000000000000000000000000000000000000000000000000000000000001514 228.0
LYD2_k127_5736637_17 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000000000000000000000000000000000001405 212.0
LYD2_k127_5736637_18 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000000000003034 192.0
LYD2_k127_5736637_19 Putative member of DMT superfamily (DUF486) K09922 - - 0.00000000000000000000000000000000000000000000000000001182 212.0
LYD2_k127_5736637_2 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 2.8e-248 770.0
LYD2_k127_5736637_20 Sporulation related domain - - - 0.0000000000000000000000000000000001074 143.0
LYD2_k127_5736637_21 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000001225 124.0
LYD2_k127_5736637_3 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.332e-235 736.0
LYD2_k127_5736637_4 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00169,K03737 - 1.2.7.1 3.191e-233 726.0
LYD2_k127_5736637_5 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 2.983e-229 712.0
LYD2_k127_5736637_6 PFAM Thiamine pyrophosphate K00170,K18356 - 1.2.1.58,1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 596.0
LYD2_k127_5736637_7 Transporter associated domain K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000637 460.0
LYD2_k127_5736637_8 PFAM PhoH family protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 460.0
LYD2_k127_5736637_9 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 380.0
LYD2_k127_5753069_0 PFAM Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 406.0
LYD2_k127_5753069_1 Sulfate permease family K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 334.0
LYD2_k127_5753069_2 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 302.0
LYD2_k127_5753069_3 - - - - 0.00000000000000000000000002271 111.0
LYD2_k127_5753069_4 Transposase IS200 like - - - 0.00000000000000000001628 92.0
LYD2_k127_5753069_5 Transposase IS200 like - - - 0.00000000152 60.0
LYD2_k127_5755845_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 537.0
LYD2_k127_5755845_1 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 337.0
LYD2_k127_5755845_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 301.0
LYD2_k127_5755845_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006677 291.0
LYD2_k127_5755845_4 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001933 244.0
LYD2_k127_5755845_5 Soluble lytic murein transglycosylase L domain K08309 - - 0.000000309 55.0
LYD2_k127_5764161_0 hydroxypyruvate reductase K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 565.0
LYD2_k127_5764161_1 glycosyl transferase family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 546.0
LYD2_k127_5764161_2 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002859 372.0
LYD2_k127_5764161_3 transmembrane transport - - - 0.000000000000000000000000000109 124.0
LYD2_k127_5764161_4 haloacid dehalogenase-like hydrolase K05947,K07026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050897 2.4.1.217,3.1.3.70 0.00004649 48.0
LYD2_k127_5764235_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 1.056e-251 779.0
LYD2_k127_5764235_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 539.0
LYD2_k127_5764235_10 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000000000001078 229.0
LYD2_k127_5764235_11 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000001394 210.0
LYD2_k127_5764235_12 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000000000009198 190.0
LYD2_k127_5764235_13 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000000000000004669 184.0
LYD2_k127_5764235_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000000000000000000000000000002399 162.0
LYD2_k127_5764235_15 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000222 141.0
LYD2_k127_5764235_16 - - - - 0.0000000000000000000000000002946 116.0
LYD2_k127_5764235_17 Ribosomal protein L30p/L7e K02907 - - 0.0000000000000000000000000004263 113.0
LYD2_k127_5764235_18 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000006426 74.0
LYD2_k127_5764235_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 374.0
LYD2_k127_5764235_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 340.0
LYD2_k127_5764235_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 310.0
LYD2_k127_5764235_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 284.0
LYD2_k127_5764235_6 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K02876 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008671 246.0
LYD2_k127_5764235_7 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004256 244.0
LYD2_k127_5764235_8 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001156 240.0
LYD2_k127_5764235_9 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000006617 229.0
LYD2_k127_5777947_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004706 423.0
LYD2_k127_5777947_1 DEAD DEAH box helicase domain protein K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008627 419.0
LYD2_k127_5777947_2 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 292.0
LYD2_k127_5777947_3 - - - - 0.000000000000000000000000000000000000000000000000003073 189.0
LYD2_k127_5800665_0 PAS fold-4 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 388.0
LYD2_k127_5800665_1 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003381 276.0
LYD2_k127_5801992_0 Pfam Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 485.0
LYD2_k127_5801992_1 Glutathione S-transferase, C-terminal domain K03599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 363.0
LYD2_k127_5801992_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 295.0
LYD2_k127_5801992_3 Stringent starvation protein B K03600 - - 0.000000000000000000000000000000000000000000000001669 179.0
LYD2_k127_5801992_4 PFAM UBA THIF-type NAD FAD binding protein K21029 - 2.7.7.80 0.000000000000000000000000001208 113.0
LYD2_k127_5801992_5 - - - - 0.0000000000000008331 78.0
LYD2_k127_5850132_0 general secretion pathway protein D K02453 - - 4.71e-238 756.0
LYD2_k127_5850132_1 type II secretion system protein E K02454,K02652,K12276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 286.0
LYD2_k127_5850132_10 Type II secretion system protein C K02452 - - 0.00000006712 62.0
LYD2_k127_5850132_2 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001115 278.0
LYD2_k127_5850132_3 Hep Hag repeat protein - - - 0.00000000000000000000000000000001646 141.0
LYD2_k127_5850132_4 AraC-binding-like domain - - - 0.0000000000000000000000000007175 126.0
LYD2_k127_5850132_5 AraC-binding-like domain - - - 0.0000000000000000000000000008579 126.0
LYD2_k127_5850132_6 AraC-binding-like domain - - - 0.000000000000000000000000004621 124.0
LYD2_k127_5850132_7 general secretion pathway protein G K02456 - - 0.00000000000000000000000009562 108.0
LYD2_k127_5850132_8 ig-like, plexins, transcription factors - - - 0.00000000002712 73.0
LYD2_k127_5850132_9 antisigma factor binding K04749 - - 0.0000000333 59.0
LYD2_k127_5860865_0 PFAM glycosyl transferase family 39 - - - 2.26e-209 665.0
LYD2_k127_5860865_1 BNR repeat-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 510.0
LYD2_k127_5860865_2 - - - - 0.000000000000000000000000000000000000000000003462 173.0
LYD2_k127_5860865_3 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000001569 105.0
LYD2_k127_5860865_4 Lysozyme inhibitor LprI - - - 0.0000000000005591 80.0
LYD2_k127_5860865_5 ABC transporter transmembrane region K11004 - - 0.0000000003988 61.0
LYD2_k127_5877727_0 Protein of unknown function, DUF255 K06888 - - 5.342e-243 762.0
LYD2_k127_5877727_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 5.424e-197 619.0
LYD2_k127_5877727_10 RecX family K03565 - - 0.000000000000000000000000000000000000000000000000000000000000004329 222.0
LYD2_k127_5877727_11 Acetyltransferase (GNAT) family K06977 GO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000003006 206.0
LYD2_k127_5877727_12 isochorismatase, hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000109 207.0
LYD2_k127_5877727_2 FtsJ-like methyltransferase K06968 - 2.1.1.186 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 532.0
LYD2_k127_5877727_3 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 498.0
LYD2_k127_5877727_4 Restriction endonuclease EcoRV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009857 436.0
LYD2_k127_5877727_5 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 435.0
LYD2_k127_5877727_6 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 342.0
LYD2_k127_5877727_7 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 335.0
LYD2_k127_5877727_8 Inositol monophosphatase family K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000001014 256.0
LYD2_k127_5877727_9 Competence-damaged protein K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000002484 232.0
LYD2_k127_5902109_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.767e-283 878.0
LYD2_k127_5902109_1 Threonine synthase N terminus K01733 - 4.2.3.1 1.156e-206 644.0
LYD2_k127_5902109_2 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 492.0
LYD2_k127_5902109_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 396.0
LYD2_k127_5902109_4 Domain of unknown function (DUF1956) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 391.0
LYD2_k127_5902109_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004962 246.0
LYD2_k127_5902109_6 Endonuclease containing a URI domain K07461 - - 0.00000000000000000000000000000000000000009053 153.0
LYD2_k127_5904533_0 Multi-copper - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 462.0
LYD2_k127_5904533_1 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic domain K01886 - 6.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 422.0
LYD2_k127_5904533_2 Copper binding proteins, plastocyanin/azurin family K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004163 402.0
LYD2_k127_5904533_3 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003842 334.0
LYD2_k127_5904533_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000001617 267.0
LYD2_k127_5904533_5 cytochrome C, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003723 266.0
LYD2_k127_5904533_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000003022 227.0
LYD2_k127_5904533_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000202 209.0
LYD2_k127_5904533_8 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.0000000000000000000000000000000000005328 142.0
LYD2_k127_5913932_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0 1238.0
LYD2_k127_5913932_1 Protein of unknown function - - - 0.0 1066.0
LYD2_k127_5913932_2 PFAM Adenylyl cyclase class-3 4 guanylyl cyclase K01769 - 4.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003274 492.0
LYD2_k127_5923211_0 TIGRFAM DNA internalization-related competence protein ComEC Rec2 K02238 - - 6.334e-315 981.0
LYD2_k127_5923211_1 metal-dependent phosphohydrolase HD sub domain K07814 - - 2.001e-229 720.0
LYD2_k127_5923211_10 transcription factor binding - - - 0.000000000000000000000000000000000000000000000000000000005538 201.0
LYD2_k127_5923211_11 transcription factor binding - - - 0.000000000000000000000000000000000000000000000000000000006077 201.0
LYD2_k127_5923211_12 GTP-binding domain protein K06945 - - 0.00000000000000000000000000000000000000000000000000001621 195.0
LYD2_k127_5923211_13 NADP transhydrogenase K00322,K00324 - 1.6.1.1,1.6.1.2 0.0000000000000000000000000000000000000000000000000002421 185.0
LYD2_k127_5923211_14 Roadblock/LC7 domain K07131 - - 0.0000000000000000000000000001056 119.0
LYD2_k127_5923211_15 - - - - 0.0000000001426 70.0
LYD2_k127_5923211_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 1.246e-216 681.0
LYD2_k127_5923211_3 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.344e-204 645.0
LYD2_k127_5923211_4 Alanine dehydrogenase/PNT, N-terminal domain K00324 - 1.6.1.2 1.173e-202 635.0
LYD2_k127_5923211_5 Bacterial-like globin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 361.0
LYD2_k127_5923211_6 Protein-tyrosine phosphatase K14165 - 3.1.3.16,3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006103 330.0
LYD2_k127_5923211_7 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000003081 245.0
LYD2_k127_5923211_8 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.000000000000000000000000000000000000000000000000000000000000000004669 229.0
LYD2_k127_5923211_9 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000023 201.0
LYD2_k127_5944582_0 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365,K05366 - 2.4.1.129,3.4.16.4 0.0 1307.0
LYD2_k127_5944582_1 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1161.0
LYD2_k127_5944582_10 - - - - 0.0000000000000000000000000000000000000000000003951 170.0
LYD2_k127_5944582_11 diguanylate cyclase - - - 0.000000000000000000000000000000000000000003154 168.0
LYD2_k127_5944582_13 chlorophyll binding K03286,K07275 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000001835 141.0
LYD2_k127_5944582_15 OmpA-like transmembrane domain - - - 0.000001474 57.0
LYD2_k127_5944582_2 Collagenase K08303 - - 3e-323 1003.0
LYD2_k127_5944582_3 serves to protect cells from the toxic effects of hydrogen peroxide K03781 - 1.11.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 501.0
LYD2_k127_5944582_4 PFAM ABC transporter related K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 484.0
LYD2_k127_5944582_5 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004505 447.0
LYD2_k127_5944582_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 319.0
LYD2_k127_5944582_7 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003355 267.0
LYD2_k127_5944582_8 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000005094 226.0
LYD2_k127_5944582_9 photosynthesis K12132,K20543 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000747 183.0
LYD2_k127_5980439_0 General secretory system II protein E domain protein K02454,K02652,K12276 - - 1.008e-299 926.0
LYD2_k127_5980439_1 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 586.0
LYD2_k127_5980439_2 PFAM type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 574.0
LYD2_k127_5980439_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 493.0
LYD2_k127_5980439_4 Tetratricopeptide repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001747 279.0
LYD2_k127_5980439_5 - - - - 0.0000000000000000000000000000000000000000000000000000000754 202.0
LYD2_k127_5980439_6 - - - - 0.0000000000000000000000000002217 119.0
LYD2_k127_5990783_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000718 404.0
LYD2_k127_5990783_1 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 317.0
LYD2_k127_5990783_2 Probable molybdopterin binding domain K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 285.0
LYD2_k127_5990783_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000008568 166.0
LYD2_k127_5990783_5 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000004241 55.0
LYD2_k127_5991980_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 7.144e-309 963.0
LYD2_k127_5991980_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 2.394e-291 901.0
LYD2_k127_5991980_10 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001181 243.0
LYD2_k127_5991980_11 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000009196 153.0
LYD2_k127_5991980_12 PFAM major facilitator superfamily MFS_1 K08218 - - 0.00000000000000000809 83.0
LYD2_k127_5991980_13 OmpA-like transmembrane domain K03286 - - 0.0000000000005042 76.0
LYD2_k127_5991980_14 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000003396 49.0
LYD2_k127_5991980_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 8.506e-222 692.0
LYD2_k127_5991980_3 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 1.362e-206 645.0
LYD2_k127_5991980_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 2.013e-197 625.0
LYD2_k127_5991980_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 559.0
LYD2_k127_5991980_6 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005179 372.0
LYD2_k127_5991980_7 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007913 368.0
LYD2_k127_5991980_8 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 359.0
LYD2_k127_5991980_9 rod shape-determining protein MreD K03571 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002001 262.0
LYD2_k127_5998301_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1515.0
LYD2_k127_5998301_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007319 419.0
LYD2_k127_5998301_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001171 264.0
LYD2_k127_5998301_3 Belongs to the UPF0235 family K09131 - - 0.0000000000000000000000000000000000000000001229 165.0
LYD2_k127_5998301_4 Putative quorum-sensing-regulated virulence factor K09954 - - 0.00000000000000000000000000000000002064 136.0
LYD2_k127_5998301_5 PFAM import inner membrane translocase subunit Tim44 - - - 0.0000000000000856 73.0
LYD2_k127_6049944_0 EcoEI R protein C-terminal K01153 - 3.1.21.3 7.743e-295 917.0
LYD2_k127_6049944_1 Tellurite resistance protein TerB - - - 0.0000000000000000000000000000000000000000000005365 168.0
LYD2_k127_6113321_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1204.0
LYD2_k127_6113321_1 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002891 587.0
LYD2_k127_6113321_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 507.0
LYD2_k127_6113321_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030234,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0065007,GO:0065009,GO:0098772 2.7.11.33,2.7.4.28 0.00000000000000000000000000009699 119.0
LYD2_k127_6113321_4 ABC transporter K02003 - - 0.0000000001101 63.0
LYD2_k127_6131161_0 AsmA family K07289 - - 8.768e-286 896.0
LYD2_k127_6131161_1 endonuclease III K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 541.0
LYD2_k127_6131161_2 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 493.0
LYD2_k127_6131161_3 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000000000000000000000000003678 194.0
LYD2_k127_6131161_4 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000000000000004542 159.0
LYD2_k127_6131161_5 membrane - - - 0.000000000000000000000000000000000000000002826 157.0
LYD2_k127_6131161_6 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000000000000000008878 140.0
LYD2_k127_6131161_7 Serine dehydrogenase proteinase - - - 0.0000000000000000000000000000003568 136.0
LYD2_k127_6131161_8 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00000000000000000000016 99.0
LYD2_k127_6131161_9 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 0.0000004394 53.0
LYD2_k127_6141876_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 5.903e-215 668.0
LYD2_k127_6141876_1 SMART phosphoesterase PA-phosphatase related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 371.0
LYD2_k127_6141876_2 Protein of unknown function (DUF520) K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 301.0
LYD2_k127_6141876_3 DJ-1/PfpI family K03152 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005262 271.0
LYD2_k127_6141876_4 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001024 240.0
LYD2_k127_6141876_5 Thioredoxin K03671 - - 0.000000000000000000000000000000000000000000000000000000000000005545 218.0
LYD2_k127_6141876_6 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.00000000000000000000000000000000000000000000000002177 180.0
LYD2_k127_6141876_7 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000005543 93.0
LYD2_k127_6244593_0 Transposase IS116 IS110 IS902 family protein K07486 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 556.0
LYD2_k127_6287747_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 6.088e-229 715.0
LYD2_k127_6287747_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 6.255e-203 638.0
LYD2_k127_6287747_10 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002894 239.0
LYD2_k127_6287747_11 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000000000000000009078 217.0
LYD2_k127_6287747_12 - - - - 0.000000000003013 78.0
LYD2_k127_6287747_13 aspartyl protease K06985 - - 0.000000000451 67.0
LYD2_k127_6287747_2 PFAM AIR synthase related protein domain protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 595.0
LYD2_k127_6287747_3 TIGRFAM HAD-superfamily subfamily IB hydrolase, TIGR01490 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 361.0
LYD2_k127_6287747_4 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006903 362.0
LYD2_k127_6287747_5 Deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000679 307.0
LYD2_k127_6287747_6 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005379 300.0
LYD2_k127_6287747_7 Bacterial dnaA protein K10763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 296.0
LYD2_k127_6287747_8 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003497 251.0
LYD2_k127_6287747_9 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000002109 239.0
LYD2_k127_6288397_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 2.995e-202 633.0
LYD2_k127_6288397_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001879 267.0
LYD2_k127_6288397_2 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009399 267.0
LYD2_k127_6288397_3 Helix-turn-helix domain K15539 - - 0.00000000000000000000000000000004524 133.0
LYD2_k127_6295224_0 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 497.0
LYD2_k127_6295224_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 334.0
LYD2_k127_6295224_2 Chalcone isomerase-like - - - 0.000000000000000000000000000000000000000000451 163.0
LYD2_k127_6295224_3 Chalcone isomerase-like - - - 0.00000000000000000000000000000000001881 138.0
LYD2_k127_635584_0 TIGRFAM outer membrane autotransporter barrel domain protein - - - 5.617e-269 882.0
LYD2_k127_635584_1 Ammonium Transporter Family K03320,K06580 - - 3.075e-243 753.0
LYD2_k127_635584_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 2.261e-239 747.0
LYD2_k127_635584_3 - - - - 1.034e-236 756.0
LYD2_k127_635584_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004699 311.0
LYD2_k127_635584_5 NUDIX domain K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 290.0
LYD2_k127_635584_6 TIGRFAM outer membrane autotransporter barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001458 277.0
LYD2_k127_635584_7 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000001797 207.0
LYD2_k127_6392_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB - - - 0.0 1100.0
LYD2_k127_6392_1 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0 1023.0
LYD2_k127_6392_2 cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 427.0
LYD2_k127_6392_3 SMART beta-lactamase domain protein K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 413.0
LYD2_k127_6392_4 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 404.0
LYD2_k127_6392_5 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 343.0
LYD2_k127_6392_6 metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000006109 228.0
LYD2_k127_6392_7 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000001229 175.0
LYD2_k127_640617_0 Glycosyl transferase family 21 K00694 - 2.4.1.12 5.661e-271 863.0
LYD2_k127_640617_1 cellulose synthase K20541 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 576.0
LYD2_k127_640617_2 Inorganic H+ pyrophosphatase K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 524.0
LYD2_k127_640617_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 510.0
LYD2_k127_640617_4 cellulose synthase operon C domain protein K20543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 493.0
LYD2_k127_640617_5 Cellulose biosynthesis protein BcsG - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 456.0
LYD2_k127_640617_6 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005142 376.0
LYD2_k127_640617_7 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000002987 186.0
LYD2_k127_654391_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 562.0
LYD2_k127_654391_1 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645,K13935,K15355 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005716 534.0
LYD2_k127_654391_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 498.0
LYD2_k127_654391_3 KR domain K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009084 408.0
LYD2_k127_654391_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 280.0
LYD2_k127_654391_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000001227 139.0
LYD2_k127_659059_0 Putative diguanylate phosphodiesterase - - - 2.848e-254 798.0
LYD2_k127_659059_1 Histidine kinase K02482 - 2.7.13.3 2.062e-197 623.0
LYD2_k127_659059_2 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 454.0
LYD2_k127_659059_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 336.0
LYD2_k127_659059_4 SMART Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003352 310.0
LYD2_k127_659059_5 Phosphate acyltransferases K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000009256 216.0
LYD2_k127_659059_6 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.000000000000000000000000000000000000000000000003174 174.0
LYD2_k127_659059_7 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000000000000000000001072 164.0
LYD2_k127_66826_0 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 614.0
LYD2_k127_66826_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006803 558.0
LYD2_k127_66826_2 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 537.0
LYD2_k127_66826_3 NADH flavin K09461 - 1.14.13.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 532.0
LYD2_k127_66826_4 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 390.0
LYD2_k127_669196_0 Nitrogenase cofactor biosynthesis protein NifB K02585 - - 2.32e-274 851.0
LYD2_k127_669196_1 LRV protein FeS4 cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007757 262.0
LYD2_k127_669196_2 Iron-sulphur cluster biosynthesis - - - 0.000000000000000000000000000000000000003109 149.0
LYD2_k127_669196_3 NifZ domain K02597 - - 0.00000000000000000000000000000000001041 138.0
LYD2_k127_669196_4 4Fe-4S binding domain - - - 0.0000000000000000000000000000000001096 136.0
LYD2_k127_669196_5 PFAM NifZ family protein K02597 - - 0.0000000000000000000000000002224 116.0
LYD2_k127_68034_0 PFAM phosphoesterase, PA-phosphatase related K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003721 279.0
LYD2_k127_68034_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001305 253.0
LYD2_k127_68034_2 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000003635 222.0
LYD2_k127_68034_3 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000001526 182.0
LYD2_k127_686287_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 1.352e-274 852.0
LYD2_k127_686287_1 PFAM aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 2.97e-205 644.0
LYD2_k127_686287_2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005192 591.0
LYD2_k127_686287_3 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000002583 218.0
LYD2_k127_686287_4 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000000000007449 135.0
LYD2_k127_690224_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1030.0
LYD2_k127_690224_1 SMART PDZ DHR GLGF domain protein K11749 - - 3.99e-205 646.0
LYD2_k127_690224_10 Copper resistance protein D - - - 0.000000000000000000000000000000000000000000000000000001925 200.0
LYD2_k127_690224_11 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000000000000000000000000000000000000000000007716 189.0
LYD2_k127_690224_12 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000000000000000000000000000000000002698 157.0
LYD2_k127_690224_13 PFAM PHP C-terminal K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.000000000000002824 77.0
LYD2_k127_690224_14 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000007772 71.0
LYD2_k127_690224_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 7.817e-199 627.0
LYD2_k127_690224_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 597.0
LYD2_k127_690224_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004047 478.0
LYD2_k127_690224_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 389.0
LYD2_k127_690224_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 289.0
LYD2_k127_690224_7 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000002239 258.0
LYD2_k127_690224_8 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004114 251.0
LYD2_k127_690224_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000002654 225.0
LYD2_k127_691456_0 PFAM TonB-dependent receptor plug K02014,K16089 - - 3.498e-289 904.0
LYD2_k127_691456_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 3.073e-206 644.0
LYD2_k127_691456_10 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000000000000000001958 191.0
LYD2_k127_691456_11 TolA C-terminal K03646 - - 0.0000000000000000000000000000000000000000000001592 179.0
LYD2_k127_691456_12 Domain of unknown function (DUF4154) - - - 0.0000000000000000000000008001 111.0
LYD2_k127_691456_2 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 610.0
LYD2_k127_691456_3 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 370.0
LYD2_k127_691456_4 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008377 361.0
LYD2_k127_691456_5 PFAM MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 355.0
LYD2_k127_691456_6 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000003353 224.0
LYD2_k127_691456_7 Histidine kinase K11527 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000002328 203.0
LYD2_k127_691456_8 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000000000000466 200.0
LYD2_k127_691456_9 OmpA family K03640 - - 0.000000000000000000000000000000000000000000000000000001091 196.0
LYD2_k127_691914_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 1.334e-315 976.0
LYD2_k127_691914_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 1.835e-226 708.0
LYD2_k127_691914_10 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000008405 108.0
LYD2_k127_691914_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 456.0
LYD2_k127_691914_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 423.0
LYD2_k127_691914_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 377.0
LYD2_k127_691914_5 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 287.0
LYD2_k127_691914_6 cyclic nucleotide binding K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003838 280.0
LYD2_k127_691914_7 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004462 271.0
LYD2_k127_691914_8 PFAM Carbamoyl-phosphate synthase L chain ATP-binding K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000003004 189.0
LYD2_k127_691914_9 CRS1_YhbY K07574 - - 0.00000000000000000000000000000000000003735 149.0
LYD2_k127_700807_0 Heat shock 70 kDa protein K04043 - - 6.818e-295 915.0
LYD2_k127_700807_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006975 426.0
LYD2_k127_700807_2 Belongs to the peptidase S16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 338.0
LYD2_k127_700807_3 - - - - 0.0000000000000000000000000000000000000000004993 162.0
LYD2_k127_700807_4 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.0000000000000000000001066 100.0
LYD2_k127_700807_5 Ankyrin repeat - - - 0.000000000000001243 91.0
LYD2_k127_705460_0 TIGRFAM oligopeptide dipeptide ABC transporter, ATPase subunit K02031,K02032 - - 3.313e-286 893.0
LYD2_k127_705460_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 555.0
LYD2_k127_705460_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 532.0
LYD2_k127_705460_3 LysM domain K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009052 517.0
LYD2_k127_705460_4 interspecies interaction between organisms - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 403.0
LYD2_k127_705460_5 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 364.0
LYD2_k127_705460_6 DSBA Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 325.0
LYD2_k127_705460_7 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000001707 151.0
LYD2_k127_715951_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000446 554.0
LYD2_k127_715951_1 Belongs to the peptidase S16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 310.0
LYD2_k127_715951_11 ABC transporter - - - 0.00000000001153 73.0
LYD2_k127_715951_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000005569 252.0
LYD2_k127_715951_3 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003377 251.0
LYD2_k127_715951_4 sister chromatid segregation - - - 0.00000000000000000000000000000000000000000000000000000000000001131 223.0
LYD2_k127_715951_5 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000000001763 199.0
LYD2_k127_715951_6 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.0000000000000000000000000000000000000000000006281 177.0
LYD2_k127_715951_7 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.000000000000000000000000000000000000000003242 166.0
LYD2_k127_715951_8 FecR protein - - - 0.000000000000000000005343 105.0
LYD2_k127_715951_9 Tetratricopeptide repeat - - - 0.000000000000000004552 94.0
LYD2_k127_721599_0 PFAM peptidase S1 and S6 chymotrypsin Hap K04691,K04772 - - 7.235e-194 610.0
LYD2_k127_721599_1 histone deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 537.0
LYD2_k127_721599_10 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 - 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000002464 240.0
LYD2_k127_721599_11 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000005553 201.0
LYD2_k127_721599_12 HIT domain K02503 - - 0.000000000000000000000000000000000000000000000000000000001455 203.0
LYD2_k127_721599_13 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.0000000000000000000000000000000000000000001909 164.0
LYD2_k127_721599_14 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000000001301 121.0
LYD2_k127_721599_15 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000003688 109.0
LYD2_k127_721599_2 4 iron, 4 sulfur cluster binding K02574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 527.0
LYD2_k127_721599_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 473.0
LYD2_k127_721599_4 Histidine biosynthesis protein K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 469.0
LYD2_k127_721599_5 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006869 403.0
LYD2_k127_721599_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 386.0
LYD2_k127_721599_7 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 346.0
LYD2_k127_721599_8 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004898 314.0
LYD2_k127_73298_0 V-type ATPase 116kDa subunit family K02123 - - 2.685e-262 822.0
LYD2_k127_73298_1 ATP synthase (C/AC39) subunit K02119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 441.0
LYD2_k127_73298_2 V-type proton ATPase subunit E K02121 - - 0.0000000000000000000000000000000000000000000000000000000000000000002624 238.0
LYD2_k127_73298_3 ATP synthase subunit C K02124 - - 0.0000000000000000000000000000000000000000000000000000000000000000009558 230.0
LYD2_k127_73298_4 ATP synthase (F/14-kDa) subunit - - - 0.000000000000000000000000000000000000000001759 162.0
LYD2_k127_73298_5 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 0.000000000000000000000000002003 115.0
LYD2_k127_73298_6 - - - - 0.00000000000000000000000000375 117.0
LYD2_k127_73298_7 NYN domain K06860 - - 0.00000006961 61.0
LYD2_k127_744269_0 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 554.0
LYD2_k127_744269_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 367.0
LYD2_k127_744269_2 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 319.0
LYD2_k127_744269_3 Carbonic anhydrase K01673 GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0008150,GO:0008270,GO:0015976,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0046872,GO:0046914 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 322.0
LYD2_k127_744269_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 284.0
LYD2_k127_744269_5 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000001467 256.0
LYD2_k127_744269_6 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000002833 126.0
LYD2_k127_786163_0 Histidine Phosphotransfer domain K02487,K06596 - - 0.0 1712.0
LYD2_k127_786163_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 6.696e-259 806.0
LYD2_k127_786163_2 histidine kinase HAMP region domain protein K02660,K03406 - - 1.732e-203 653.0
LYD2_k127_786163_3 PFAM TrkA-N domain protein K03499 - - 6.545e-194 608.0
LYD2_k127_786163_4 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000574 311.0
LYD2_k127_786163_5 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000000000000000000000000000000001386 235.0
LYD2_k127_786163_6 cheY-homologous receiver domain K02657 - - 0.000000000000000000000000000000000000000000000000000000000000001007 220.0
LYD2_k127_786163_7 Two component signalling adaptor domain K02659 - - 0.0000000000000000000000000000000000000000000000000000000000002123 215.0
LYD2_k127_786163_8 cheY-homologous receiver domain K02658 - - 0.00000000000000000000000000000000000000000000000000000006979 198.0
LYD2_k127_786163_9 PFAM aspartate ornithine carbamoyltransferase Asp Orn-binding region K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000001759 177.0
LYD2_k127_788557_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 466.0
LYD2_k127_788557_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 291.0
LYD2_k127_788557_2 - - - - 0.0000000007833 66.0
LYD2_k127_823647_0 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 7.072e-279 871.0
LYD2_k127_823647_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 537.0
LYD2_k127_823647_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 533.0
LYD2_k127_823647_3 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 419.0
LYD2_k127_823647_4 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 367.0
LYD2_k127_823647_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 366.0
LYD2_k127_823647_6 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006098 336.0
LYD2_k127_823647_7 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005322 276.0
LYD2_k127_823647_8 - - - - 0.0000000000003928 74.0
LYD2_k127_823647_9 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.0007442 43.0
LYD2_k127_836928_0 SMART adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005182 538.0
LYD2_k127_836928_1 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004294 321.0
LYD2_k127_836928_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000988 277.0
LYD2_k127_836928_3 TIGRFAM PAS sensor protein - - - 0.00000000000000000001934 106.0
LYD2_k127_855889_0 Belongs to the peptidase M16 family K07263 - - 1.873e-210 662.0
LYD2_k127_855889_1 Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 567.0
LYD2_k127_855889_10 PFAM Sulfate transporter antisigma-factor antagonist STAS K17763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 370.0
LYD2_k127_855889_11 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003684 363.0
LYD2_k127_855889_12 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 349.0
LYD2_k127_855889_13 protein conserved in bacteria K09859 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 344.0
LYD2_k127_855889_14 Haemolysin-III related K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 319.0
LYD2_k127_855889_15 Peptidoglycan-synthase activator LpoB K07337 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001559 252.0
LYD2_k127_855889_16 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000416 232.0
LYD2_k127_855889_17 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000000000000002755 216.0
LYD2_k127_855889_18 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000005488 216.0
LYD2_k127_855889_19 LPP20 lipoprotein - - - 0.00000000000000000000000000000000000000000000000003368 193.0
LYD2_k127_855889_2 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 549.0
LYD2_k127_855889_20 - K17762 - - 0.00000000000000000000000000000000000000000001827 165.0
LYD2_k127_855889_21 LPP20 lipoprotein - - - 0.0000000000000000000000000000000006631 139.0
LYD2_k127_855889_22 protein conserved in bacteria - - - 0.000000000000000005394 89.0
LYD2_k127_855889_23 PFAM Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000004128 85.0
LYD2_k127_855889_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 505.0
LYD2_k127_855889_4 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 502.0
LYD2_k127_855889_5 anti-sigma regulatory factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 447.0
LYD2_k127_855889_6 Sigma-70 factor, region 1.2 K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 415.0
LYD2_k127_855889_7 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000568 385.0
LYD2_k127_855889_8 TIGRFAM cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 372.0
LYD2_k127_855889_9 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 375.0
LYD2_k127_871192_0 RadC-like JAB domain K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 382.0
LYD2_k127_871192_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001993 284.0
LYD2_k127_871192_2 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001551 273.0
LYD2_k127_871192_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000001172 178.0
LYD2_k127_871192_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000000000000000000000000000007254 157.0
LYD2_k127_871192_5 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000000000000003867 111.0
LYD2_k127_871192_6 Iron-binding zinc finger CDGSH type - - - 0.000000000000000000000000004289 111.0
LYD2_k127_871192_7 Lysozyme inhibitor LprI - - - 0.00000000000007487 84.0
LYD2_k127_871192_8 PFAM Hemolysin-type calcium-binding repeat (2 copies) K11005,K11029 GO:0001906,GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005576,GO:0006873,GO:0006874,GO:0006875,GO:0007204,GO:0008150,GO:0009975,GO:0009987,GO:0016829,GO:0016849,GO:0019725,GO:0019835,GO:0030003,GO:0031640,GO:0035821,GO:0042592,GO:0044179,GO:0044364,GO:0044419,GO:0044764,GO:0048878,GO:0050801,GO:0051480,GO:0051704,GO:0051715,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0072503,GO:0072507,GO:0098771 4.6.1.1 0.00000000000164 74.0
LYD2_k127_871192_9 - - - - 0.0000000002749 72.0
LYD2_k127_892741_0 2-oxoglutarate dehydrogenase N-terminus K00164 - 1.2.4.2 0.0 1064.0
LYD2_k127_892741_1 SMART AAA ATPase K02450 - - 3.591e-254 794.0
LYD2_k127_892741_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000822 501.0
LYD2_k127_892741_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 346.0
LYD2_k127_892741_4 - - - - 0.000000000000000000000001101 108.0
LYD2_k127_892741_5 Type II secretion system protein B K02451 - - 0.000009166 53.0
LYD2_k127_895944_0 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 518.0
LYD2_k127_895944_1 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 344.0
LYD2_k127_895944_2 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 317.0
LYD2_k127_895944_3 water channel activity K02440,K06188 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001047 262.0
LYD2_k127_895944_5 SMART RNA-binding S4 domain protein K04762 - - 0.000000000000000000000000000000000000005882 153.0
LYD2_k127_906844_0 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 497.0
LYD2_k127_906844_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 430.0
LYD2_k127_906844_2 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000489 428.0
LYD2_k127_906844_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 364.0
LYD2_k127_906844_4 Protein of unknown function (DUF3025) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 340.0
LYD2_k127_906844_5 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 328.0
LYD2_k127_906844_6 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000005852 228.0
LYD2_k127_906844_7 Trm112p-like protein K09791 - - 0.00000000000000000000000008336 107.0
LYD2_k127_940385_0 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 429.0
LYD2_k127_940385_1 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007042 271.0
LYD2_k127_940385_2 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000000000000000000000007168 195.0
LYD2_k127_940385_3 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000000005634 123.0
LYD2_k127_94273_0 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 434.0
LYD2_k127_94273_1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007639 418.0
LYD2_k127_94273_2 PFAM peptidase M48 Ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 373.0
LYD2_k127_94273_3 Domain of unknown function (DUF4382) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 370.0
LYD2_k127_94273_4 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 321.0
LYD2_k127_94273_5 Belongs to the peptidase S24 family K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008254 290.0
LYD2_k127_94273_6 PFAM CHASE2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001332 237.0
LYD2_k127_94273_7 Bacterial SH3 domain - - - 0.000000000000000000000000000000000000000000000000002588 187.0
LYD2_k127_94273_8 pathogenesis - - - 0.0000000000000000000000000000000004359 139.0
LYD2_k127_94273_9 acr, cog1430 K09005 - - 0.00000000000000000000000000000002082 136.0