Overview

ID MAG02040
Name LYD2_bin.14
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order SZUA-252
Family SZUA-252
Genus
Species
Assembly information
Completeness (%) 54.39
Contamination (%) 0.08
GC content (%) 70.0
N50 (bp) 8,698
Genome size (bp) 1,614,421

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1393

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1019528_0 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000397 173.0
LYD2_k127_1019528_1 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000002419 172.0
LYD2_k127_1019528_2 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000007527 128.0
LYD2_k127_1019528_3 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000002466 104.0
LYD2_k127_1019528_4 Binds together with S18 to 16S ribosomal RNA K01754,K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 4.3.1.19 0.0000000000000000001814 92.0
LYD2_k127_1019528_5 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.000007246 56.0
LYD2_k127_1019528_6 Predicted membrane protein (DUF2232) - - - 0.0000126 57.0
LYD2_k127_1107859_0 PFAM aminotransferase, class I K00812,K10907 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008146 468.0
LYD2_k127_1107859_1 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 347.0
LYD2_k127_1107859_2 Fibronectin type 3 domain - - - 0.00000000000000004808 97.0
LYD2_k127_1107859_3 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0000151 51.0
LYD2_k127_1107859_4 Multidrug ABC transporter ATPase K01990 - - 0.0001453 51.0
LYD2_k127_1121496_0 DinB family - - - 0.0000000000000000000000005951 112.0
LYD2_k127_1121496_1 COG COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0003753 52.0
LYD2_k127_1141331_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000002894 221.0
LYD2_k127_1141331_1 cell septum assembly - - - 0.0000000000000000000000000000000000000000000000000000004267 212.0
LYD2_k127_1141331_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000397 173.0
LYD2_k127_1141331_3 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000000000005015 141.0
LYD2_k127_1141331_4 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000004815 89.0
LYD2_k127_1141331_5 Sporulation and spore germination - - - 0.000000000000193 83.0
LYD2_k127_117379_0 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 586.0
LYD2_k127_117379_1 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002144 276.0
LYD2_k127_117379_2 Cold-shock protein K03704 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000002725 108.0
LYD2_k127_117379_3 RNase_H superfamily K07502 - - 0.0000000002521 63.0
LYD2_k127_1174574_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 5.474e-222 701.0
LYD2_k127_1174574_1 DAHP synthetase I family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001358 290.0
LYD2_k127_1174574_2 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000007635 205.0
LYD2_k127_1201606_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 1.874e-271 854.0
LYD2_k127_1201606_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000596 347.0
LYD2_k127_1201606_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000005795 245.0
LYD2_k127_1201606_3 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000004803 222.0
LYD2_k127_1201606_4 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.00000000000000000000000000000000000000000000000000000001265 217.0
LYD2_k127_1201606_5 - K07018 - - 0.00000000000000000000000000000000005482 144.0
LYD2_k127_1201606_6 Predicted permease K07089 - - 0.0000000000000000000000007321 116.0
LYD2_k127_1201606_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000003706 96.0
LYD2_k127_1201606_9 PFAM Peptidase family M1 K01256 - 3.4.11.2 0.00000003413 61.0
LYD2_k127_1203456_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 GO:0003674,GO:0003824,GO:0003938,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205 3.146e-204 647.0
LYD2_k127_1203456_1 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000005413 257.0
LYD2_k127_1203456_10 Two component signalling adaptor domain - - - 0.0002935 50.0
LYD2_k127_1203456_2 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000000000000005475 189.0
LYD2_k127_1203456_3 PFAM HD domain - - - 0.000000000000000000000000000000000000000000004555 185.0
LYD2_k127_1203456_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000002678 91.0
LYD2_k127_1203456_5 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000000000006524 72.0
LYD2_k127_1203456_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000002245 80.0
LYD2_k127_1203456_7 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.0000000000699 75.0
LYD2_k127_1203456_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000001984 53.0
LYD2_k127_1203456_9 methyl-accepting chemotaxis protein K03406 - - 0.00009998 55.0
LYD2_k127_1272324_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 1.05e-232 743.0
LYD2_k127_1272324_1 Type II/IV secretion system protein K02283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009624 509.0
LYD2_k127_1272324_10 PFAM Type II secretion system F K12511 - - 0.0000000000000000000000000000000000000000000000000000000297 208.0
LYD2_k127_1272324_11 Belongs to the GSP D family K02280 - - 0.0000000000000000000000000000000000000000000007291 188.0
LYD2_k127_1272324_12 SAF K02279 - - 0.0000000000000000000000000000000000006402 151.0
LYD2_k127_1272324_13 PFAM response regulator receiver K02282 - - 0.000000000000000000000000000000000001566 156.0
LYD2_k127_1272324_14 Protein of unknown function, DUF547 - - - 0.00000000000000000000000000000000002948 154.0
LYD2_k127_1272324_15 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000023 113.0
LYD2_k127_1272324_16 Type IV leader peptidase family K02278 - 3.4.23.43 0.0000000000000000000004285 102.0
LYD2_k127_1272324_17 Pyruvate phosphate dikinase - - - 0.0000000000004352 81.0
LYD2_k127_1272324_18 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000067 80.0
LYD2_k127_1272324_19 TadE-like protein - - - 0.00000003916 61.0
LYD2_k127_1272324_2 DNA photolyase K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009095 459.0
LYD2_k127_1272324_20 peptidyl-tyrosine sulfation - - - 0.0005222 53.0
LYD2_k127_1272324_3 Vault protein inter-alpha-trypsin domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 409.0
LYD2_k127_1272324_4 Domain of unknown function(DUF2779) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004826 379.0
LYD2_k127_1272324_5 Peptidase dimerization domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 371.0
LYD2_k127_1272324_6 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 312.0
LYD2_k127_1272324_7 ABC-2 family transporter protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000001162 254.0
LYD2_k127_1272324_8 Type II secretion system K12510 - - 0.0000000000000000000000000000000000000000000000000000000002411 214.0
LYD2_k127_1272324_9 Pfam:PNPOx_C K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000006214 214.0
LYD2_k127_133393_0 Anthranilate synthase component I, N terminal region K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006174 482.0
LYD2_k127_133393_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008277 287.0
LYD2_k127_133393_2 Peptidase C26 K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000004607 246.0
LYD2_k127_133393_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000001251 191.0
LYD2_k127_133393_4 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.000000000002452 79.0
LYD2_k127_1338809_0 Amylo-alpha-1,6-glucosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 332.0
LYD2_k127_1338809_1 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000004177 72.0
LYD2_k127_1338809_2 Cadherin domain - - - 0.00000008603 64.0
LYD2_k127_1357536_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 403.0
LYD2_k127_1357536_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 365.0
LYD2_k127_1357536_2 Belongs to the FtsK SpoIIIE SftA family K03466 GO:0000003,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019954,GO:0030436,GO:0031323,GO:0031326,GO:0032502,GO:0043934,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000112 167.0
LYD2_k127_1357536_3 TPR repeat - - - 0.000000000000000000000000000000000000000001205 166.0
LYD2_k127_1357536_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000004147 158.0
LYD2_k127_1357536_5 Outer membrane lipoprotein K05807 - - 0.00000000000000000002167 101.0
LYD2_k127_1416292_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000000000000000000000000000000007453 172.0
LYD2_k127_1416292_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000201 155.0
LYD2_k127_1416292_2 PFAM O-antigen polymerase K18814 - - 0.000000000001677 79.0
LYD2_k127_1425983_0 DNA polymerase III alpha subunit K02337,K14162 - 2.7.7.7 1.193e-295 942.0
LYD2_k127_1425983_1 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000002245 228.0
LYD2_k127_1425983_2 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000000000000000000000000000000000002493 222.0
LYD2_k127_1425983_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000006151 201.0
LYD2_k127_1425983_4 peptidase K01303 - 3.4.19.1 0.0000000000000000000000000000000000000000000000001577 199.0
LYD2_k127_1425983_5 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000000000000000000000001867 166.0
LYD2_k127_1444215_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 564.0
LYD2_k127_1444215_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 299.0
LYD2_k127_1444215_2 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000003725 220.0
LYD2_k127_1444215_3 Protein of unknown function, DUF484 - - - 0.00000000000000000000000000161 124.0
LYD2_k127_1444215_4 Cadherin domain - - - 0.000002058 61.0
LYD2_k127_1446770_0 PFAM Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002276 280.0
LYD2_k127_1446770_1 Bacterial regulatory protein, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000001997 265.0
LYD2_k127_1446770_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000001392 211.0
LYD2_k127_1446770_3 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000004202 147.0
LYD2_k127_1446770_4 PFAM peptidase K16922 - - 0.0000000000000000000001312 111.0
LYD2_k127_1446770_5 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000006132 69.0
LYD2_k127_1446770_6 HlyD membrane-fusion protein of T1SS - - - 0.0000000002868 74.0
LYD2_k127_1446770_7 DinB family - - - 0.000000008055 63.0
LYD2_k127_1450353_0 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008948 399.0
LYD2_k127_1450353_1 Belongs to the phosphoglycerate mutase family K22305 - 3.1.3.3 0.0000000000000000000000000001689 122.0
LYD2_k127_1450353_2 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000003333 96.0
LYD2_k127_1450353_3 Tricorn protease homolog K08676 - - 0.0001293 55.0
LYD2_k127_1503897_0 OPT oligopeptide transporter protein - - - 5.728e-215 691.0
LYD2_k127_1503897_1 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 442.0
LYD2_k127_1503897_2 diaminopimelate decarboxylase activity K01586,K12526 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.4,4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 451.0
LYD2_k127_1503897_3 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 418.0
LYD2_k127_1503897_4 Methyltransferase domain K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 305.0
LYD2_k127_1503897_5 - - - - 0.00000000000000000007992 103.0
LYD2_k127_1523741_0 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 292.0
LYD2_k127_1523741_1 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001008 278.0
LYD2_k127_1523741_2 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000003145 192.0
LYD2_k127_1523741_3 Transglycosylase associated protein - - - 0.00000000000000000000001477 101.0
LYD2_k127_1523741_4 Transposase - - - 0.000000000000000000004026 104.0
LYD2_k127_1523741_5 - - - - 0.00000000000001185 87.0
LYD2_k127_1604870_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.499e-282 889.0
LYD2_k127_1604870_1 PFAM peptidase M20 - - - 4.299e-196 628.0
LYD2_k127_1604870_2 translation initiation factor activity K06996 - - 0.000000000000000000000000000000000000000000000001884 184.0
LYD2_k127_1604870_3 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.0000000000000000000000000000001509 142.0
LYD2_k127_1604870_4 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.0000004986 51.0
LYD2_k127_1641184_0 Aldehyde dehydrogenase family K00128,K00135 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 331.0
LYD2_k127_1641184_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002099 264.0
LYD2_k127_1641184_2 SdpI/YhfL protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000001868 236.0
LYD2_k127_1641184_3 DNA-binding transcription factor activity - - - 0.000000000000000000000000009484 114.0
LYD2_k127_1689916_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 3.638e-315 1007.0
LYD2_k127_1689916_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 323.0
LYD2_k127_1689916_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000003528 194.0
LYD2_k127_1689916_3 DUF167 K09131 - - 0.00000002345 64.0
LYD2_k127_1699339_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 472.0
LYD2_k127_1699339_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 466.0
LYD2_k127_1699339_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 389.0
LYD2_k127_1699339_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000005142 222.0
LYD2_k127_1699339_4 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000003485 123.0
LYD2_k127_1699339_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000107 92.0
LYD2_k127_1699339_6 Cell division protein FtsQ K03589 - - 0.0000001578 64.0
LYD2_k127_1710073_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 577.0
LYD2_k127_1710073_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 535.0
LYD2_k127_1710073_2 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 303.0
LYD2_k127_1710073_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000008613 115.0
LYD2_k127_1710073_4 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000006194 77.0
LYD2_k127_1716763_0 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005963 323.0
LYD2_k127_1716763_1 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 303.0
LYD2_k127_1716763_2 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001971 276.0
LYD2_k127_1716763_3 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000001298 94.0
LYD2_k127_1756031_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 413.0
LYD2_k127_1756031_1 PFAM Amidohydrolase 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 391.0
LYD2_k127_1756031_2 3'-5' exonuclease K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009937 336.0
LYD2_k127_1756031_3 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000001531 224.0
LYD2_k127_1772414_0 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001036 279.0
LYD2_k127_1772414_1 Bacterial protein of unknown function (DUF899) - - - 0.00000000000000000000000000000000000000000000000000002296 190.0
LYD2_k127_1772414_2 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 0.000000000000000000000000000000000000000000000000005959 190.0
LYD2_k127_1772414_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000669 95.0
LYD2_k127_1772414_5 Universal stress protein A-like protein - - - 0.0000000000003729 76.0
LYD2_k127_1796202_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 599.0
LYD2_k127_1796202_1 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 391.0
LYD2_k127_1796202_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 346.0
LYD2_k127_1796202_3 Glucose-6-phosphate dehydrogenase subunit - - - 0.0000000000000000000000000001623 132.0
LYD2_k127_1796202_4 Glucokinase K00845 - 2.7.1.2 0.0000000634 58.0
LYD2_k127_1796202_5 lactoylglutathione lyase activity - - - 0.0000008616 54.0
LYD2_k127_1803473_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 1.476e-213 673.0
LYD2_k127_1803473_1 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 435.0
LYD2_k127_1803473_2 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 351.0
LYD2_k127_1803473_3 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005587 262.0
LYD2_k127_1803473_4 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000002971 192.0
LYD2_k127_1803473_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000004487 159.0
LYD2_k127_1803473_6 - K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.000000000000000000000000000000000002182 142.0
LYD2_k127_1803473_7 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000439 73.0
LYD2_k127_1823863_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 9.662e-250 791.0
LYD2_k127_1823863_1 Pterin binding enzyme K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000002854 241.0
LYD2_k127_1823863_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 GO:0003674,GO:0003824,GO:0004016,GO:0009975,GO:0016829,GO:0016849 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000001322 234.0
LYD2_k127_1823863_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000001497 192.0
LYD2_k127_1841914_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062 509.0
LYD2_k127_1841914_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 299.0
LYD2_k127_1841914_2 methyltransferase - - - 0.0000000000000000000000000000000000000000003819 167.0
LYD2_k127_1841914_3 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.00000000000007142 76.0
LYD2_k127_1855326_0 protein methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000004742 212.0
LYD2_k127_1855326_1 HEAT repeats - - - 0.0000000000000000000007454 107.0
LYD2_k127_1855326_2 arylsulfatase activity - - - 0.00000000000001575 87.0
LYD2_k127_1933192_0 PFAM Aldehyde dehydrogenase K00294 - 1.2.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 626.0
LYD2_k127_1933192_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 305.0
LYD2_k127_1933192_2 metallopeptidase activity - - - 0.00000000000000000000000001733 127.0
LYD2_k127_1933192_3 - - - - 0.00000000000000000000001987 117.0
LYD2_k127_1933192_4 Pkd domain containing protein - - - 0.00000004761 66.0
LYD2_k127_1944529_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 1.27e-260 819.0
LYD2_k127_1944529_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 384.0
LYD2_k127_1944529_2 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000531 135.0
LYD2_k127_1944529_3 cAMP biosynthetic process - - - 0.00000000000000000000000002619 115.0
LYD2_k127_1944529_4 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.00000000000000000000000009258 117.0
LYD2_k127_195905_0 Amino acid permease - - - 4.927e-251 792.0
LYD2_k127_195905_1 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006573 273.0
LYD2_k127_195905_2 Transcriptional regulator K09017 - - 0.000000000000000000000000000000000000000000000000002393 191.0
LYD2_k127_195905_3 Protein of unknown function, DUF255 - - - 0.000000000000000000000000006419 117.0
LYD2_k127_195905_4 Biotin-lipoyl like K07799 - - 0.000000000003065 78.0
LYD2_k127_195905_5 Sugar (and other) transporter K08151 - - 0.00004365 57.0
LYD2_k127_1984890_0 Protein kinase domain K12132 - 2.7.11.1 8.834e-221 711.0
LYD2_k127_1984890_1 Beta-eliminating lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 514.0
LYD2_k127_1984890_2 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001002 289.0
LYD2_k127_1984890_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000001121 234.0
LYD2_k127_1984890_4 FR47-like protein K03823 - 2.3.1.183 0.0000000000000000000000000005855 120.0
LYD2_k127_1984890_5 Acid phosphatase homologues - - - 0.00000000000000000000003979 113.0
LYD2_k127_1984890_6 - - - - 0.000000000001241 79.0
LYD2_k127_1984890_7 Outer membrane lipoprotein-sorting protein - - - 0.00000000001306 68.0
LYD2_k127_1984890_8 Prokaryotic N-terminal methylation motif - - - 0.0000000002637 63.0
LYD2_k127_1984890_9 Protein kinase domain K12132 - 2.7.11.1 0.000000000449 66.0
LYD2_k127_1992564_0 PFAM NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004785 460.0
LYD2_k127_1992564_1 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 387.0
LYD2_k127_1992564_2 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 344.0
LYD2_k127_1992564_3 Flavin containing amine oxidoreductase K06955 - - 0.0000000001168 74.0
LYD2_k127_2002714_0 Belongs to the ALAD family K01698 GO:0000287,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0030312,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 417.0
LYD2_k127_2002714_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 356.0
LYD2_k127_2002714_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005182 311.0
LYD2_k127_2002714_3 UreE urease accessory protein, C-terminal domain K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000001526 263.0
LYD2_k127_2002714_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000002195 264.0
LYD2_k127_2002714_5 Thought to be involved in fatty acid degradation. FadB and FadA are the alpha and beta subunits of the multifunctional enzyme complex of the fatty acid degradation cycle K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000002406 230.0
LYD2_k127_2002714_6 cytochrome complex assembly - - - 0.000000000000000000000000000000000005094 148.0
LYD2_k127_2002714_7 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000007745 66.0
LYD2_k127_2002714_8 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0006651 52.0
LYD2_k127_2011448_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 2.548e-212 688.0
LYD2_k127_2011448_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 452.0
LYD2_k127_2011448_2 virion core protein (lumpy skin disease virus) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 433.0
LYD2_k127_2011448_3 O-methyltransferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006562 281.0
LYD2_k127_2011448_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000756 222.0
LYD2_k127_2011448_5 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000001693 168.0
LYD2_k127_2011448_6 GYD domain - - - 0.00000000000000000000000000000000007983 136.0
LYD2_k127_2011448_7 Transcription factor zinc-finger K09981 - - 0.000000000000000000000000000006086 132.0
LYD2_k127_2011448_8 Ferredoxin - - - 0.000000000000000000003605 108.0
LYD2_k127_2011448_9 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000001734 68.0
LYD2_k127_2025287_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 414.0
LYD2_k127_2025287_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 395.0
LYD2_k127_2025287_10 regulator, PATAN and FRGAF domain-containing - - - 0.00000000000004372 81.0
LYD2_k127_2025287_11 Dolichol kinase - - - 0.0000000000009867 76.0
LYD2_k127_2025287_12 protein involved in exopolysaccharide biosynthesis - - - 0.0000000001481 74.0
LYD2_k127_2025287_13 Acetyltransferase (GNAT) domain - - - 0.0001525 47.0
LYD2_k127_2025287_2 short-chain dehydrogenase reductase SDR K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 359.0
LYD2_k127_2025287_3 Peptidogalycan biosysnthesis/recognition - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 338.0
LYD2_k127_2025287_4 Glycosyl transferases group 1 K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002938 292.0
LYD2_k127_2025287_5 diguanylate cyclase K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000000001297 181.0
LYD2_k127_2025287_6 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000008081 163.0
LYD2_k127_2025287_7 G-rich domain on putative tyrosine kinase - - - 0.0000000000000000000000000002986 126.0
LYD2_k127_2025287_8 PFAM Polysaccharide biosynthesis export protein K01991 - - 0.000000000000000000000857 107.0
LYD2_k127_2025287_9 PFAM Integral membrane protein DUF92 - GO:0005575,GO:0016020 - 0.000000000000001126 86.0
LYD2_k127_2085239_0 PFAM FAD linked oxidase domain protein - - - 2.206e-204 649.0
LYD2_k127_2085239_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 303.0
LYD2_k127_2085239_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 - 1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001044 273.0
LYD2_k127_2085239_3 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.0000000000000000000000000000000000000000000000000000000000001957 220.0
LYD2_k127_2085239_4 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000001967 205.0
LYD2_k127_2085239_5 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000008983 128.0
LYD2_k127_212804_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 613.0
LYD2_k127_212804_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005262 469.0
LYD2_k127_212804_10 SMART Tetratricopeptide repeat - - - 0.0000001646 64.0
LYD2_k127_212804_2 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 398.0
LYD2_k127_212804_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 331.0
LYD2_k127_212804_4 PFAM peptidase M6, immune inhibitor A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002425 276.0
LYD2_k127_212804_5 haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000001042 183.0
LYD2_k127_212804_6 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.000000000000000000000000000000002736 149.0
LYD2_k127_212804_7 HEAT repeat - - - 0.000000000000007681 87.0
LYD2_k127_212804_8 PFAM Type II secretion system protein E K02454,K02652 - - 0.0000000000002365 83.0
LYD2_k127_212804_9 Evidence 5 No homology to any previously reported sequences - - - 0.000000000001089 82.0
LYD2_k127_2250750_0 4Fe-4S dicluster domain K00184 - - 1.215e-311 981.0
LYD2_k127_2250750_1 Polysulphide reductase, NrfD K00185 - - 5.755e-198 640.0
LYD2_k127_2250750_10 protein required for cytochrome oxidase assembly K02259 - - 0.00000000000000000000000009038 119.0
LYD2_k127_2250750_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00322 - 1.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 561.0
LYD2_k127_2250750_3 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 469.0
LYD2_k127_2250750_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 340.0
LYD2_k127_2250750_5 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 330.0
LYD2_k127_2250750_6 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000004605 198.0
LYD2_k127_2250750_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000005321 196.0
LYD2_k127_2250750_8 Cytochrome c K07243 - - 0.0000000000000000000000000000000000000000000000003871 191.0
LYD2_k127_2250750_9 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000000526 181.0
LYD2_k127_2260734_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004719 400.0
LYD2_k127_2260734_1 Tricorn protease homolog K08676 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 381.0
LYD2_k127_2260734_2 protease with the C-terminal PDZ domain - - - 0.00000000000000000000000000915 113.0
LYD2_k127_2304869_0 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 381.0
LYD2_k127_2304869_1 glycosyl transferase family 8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003737 282.0
LYD2_k127_2304869_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000038 158.0
LYD2_k127_2304869_3 Mediates the transbilayer movement of Und-PP-GlcNAc- ManNAcA-Fuc4NAc (lipid III) from the inner to the outer leaflet of the cytoplasmic membrane during the assembly of enterobacterial common antigen (ECA) K03328,K16693 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0001868 53.0
LYD2_k127_2309558_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008605 377.0
LYD2_k127_2309558_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000004489 242.0
LYD2_k127_2309558_2 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000003826 239.0
LYD2_k127_2309558_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000001119 115.0
LYD2_k127_2309558_5 cellulase activity - - - 0.000000000000338 84.0
LYD2_k127_2322842_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1252.0
LYD2_k127_2322842_1 COG2217 Cation transport ATPase K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 308.0
LYD2_k127_2322842_2 PFAM SNARE associated Golgi protein - - - 0.000000000005207 74.0
LYD2_k127_2335120_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 391.0
LYD2_k127_2335120_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007904 366.0
LYD2_k127_2335120_2 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000002529 176.0
LYD2_k127_2335120_3 - - - - 0.000000000000000000007037 106.0
LYD2_k127_2335120_4 glyoxalase III activity - - - 0.0000000000003084 75.0
LYD2_k127_235838_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 542.0
LYD2_k127_235838_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 392.0
LYD2_k127_235838_2 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 375.0
LYD2_k127_235838_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000002229 208.0
LYD2_k127_235838_4 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000009501 194.0
LYD2_k127_235838_5 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000007201 162.0
LYD2_k127_235838_6 Belongs to the SUA5 family K07566 - 2.7.7.87 0.000000000000000000000003338 116.0
LYD2_k127_235838_7 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104,K01808,K07566,K20201 - 2.7.7.87,3.1.3.48,3.9.1.2,5.3.1.6 0.000000000000000000000004822 108.0
LYD2_k127_236705_0 Replicative DNA helicase K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 465.0
LYD2_k127_236705_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 451.0
LYD2_k127_236705_10 virulence factor Mce family protein K02067 - - 0.00000000000000000004516 102.0
LYD2_k127_236705_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007696 293.0
LYD2_k127_236705_3 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000001202 262.0
LYD2_k127_236705_4 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002618 250.0
LYD2_k127_236705_5 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000001707 256.0
LYD2_k127_236705_6 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000001119 224.0
LYD2_k127_236705_7 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000853 179.0
LYD2_k127_236705_8 Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000006699 180.0
LYD2_k127_236705_9 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0000166,GO:0000287,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016020,GO:0016114,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044464,GO:0046490,GO:0046872,GO:0046914,GO:0050518,GO:0051483,GO:0051484,GO:0070567,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901576 2.7.7.60 0.000000000000000000000000000000000006363 150.0
LYD2_k127_2398320_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 600.0
LYD2_k127_2398320_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 352.0
LYD2_k127_2398320_2 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000002973 239.0
LYD2_k127_2398320_3 TIGRFAM riboflavin biosynthesis protein RibF K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000007406 226.0
LYD2_k127_2398320_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000007709 198.0
LYD2_k127_2398320_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000002674 128.0
LYD2_k127_2398320_6 Protein of unknown function (DUF503) K09764 - - 0.00000000000000000008215 92.0
LYD2_k127_2398320_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043021,GO:0043024,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000006793 83.0
LYD2_k127_2408565_0 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000000000000000000000000004322 211.0
LYD2_k127_2408565_1 Uncharacterized ACR, COG1993 K09137 - - 0.0000000000000000000000000000000000000000002122 164.0
LYD2_k127_2408565_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000002993 175.0
LYD2_k127_2408565_3 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000002443 117.0
LYD2_k127_2408565_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15372 - 2.6.1.55 0.00000000000000000002085 98.0
LYD2_k127_2408565_5 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006351,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0018130,GO:0019438,GO:0032774,GO:0034335,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042493,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 5.99.1.3 0.0000000000002309 71.0
LYD2_k127_2424057_0 Elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021 525.0
LYD2_k127_2424057_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000008058 250.0
LYD2_k127_2424057_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000004427 198.0
LYD2_k127_2424057_3 PFAM YicC-like family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000000002454 216.0
LYD2_k127_2424057_4 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.000000000000000000000000000000000003507 160.0
LYD2_k127_2424057_5 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000077 98.0
LYD2_k127_2424057_6 Tetratricopeptide repeat - - - 0.00000000000000000001158 107.0
LYD2_k127_2424057_7 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000001301 50.0
LYD2_k127_2473833_0 MutL protein K00854 - 2.7.1.17 1.595e-265 831.0
LYD2_k127_2473833_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 529.0
LYD2_k127_2473833_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001942 268.0
LYD2_k127_2473833_3 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009293 249.0
LYD2_k127_2473833_4 - - - - 0.000000000000000000000664 101.0
LYD2_k127_2473833_5 - - - - 0.00000000001311 72.0
LYD2_k127_2478608_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009222 607.0
LYD2_k127_2478608_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 414.0
LYD2_k127_2478608_10 Ribosomal L32p protein family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.0000000000000000000669 95.0
LYD2_k127_2478608_11 Uncharacterized ACR, COG1399 K07040 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000003197 93.0
LYD2_k127_2478608_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 396.0
LYD2_k127_2478608_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 374.0
LYD2_k127_2478608_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 380.0
LYD2_k127_2478608_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008265 309.0
LYD2_k127_2478608_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 304.0
LYD2_k127_2478608_7 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000301 278.0
LYD2_k127_2478608_8 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000001898 190.0
LYD2_k127_2478608_9 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000001849 143.0
LYD2_k127_2492065_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1326.0
LYD2_k127_2492065_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0 1029.0
LYD2_k127_2492065_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008072 517.0
LYD2_k127_2492065_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 396.0
LYD2_k127_2492065_4 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 389.0
LYD2_k127_2492065_5 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.000000000000000000000000004805 117.0
LYD2_k127_2492065_6 Cupredoxin-like domain - - - 0.000000000000000000000364 101.0
LYD2_k127_2492065_7 Cupredoxin-like domain - - - 0.00000000000000000000354 97.0
LYD2_k127_2492065_8 DinB superfamily - - - 0.000000000000000002381 100.0
LYD2_k127_2492065_9 Multicopper oxidase - - - 0.000004138 55.0
LYD2_k127_2508875_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 351.0
LYD2_k127_2508875_1 SNARE associated Golgi protein K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000008649 221.0
LYD2_k127_2508875_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000004865 108.0
LYD2_k127_2546895_0 transferase activity, transferring glycosyl groups K13057 - 2.4.1.245 0.000000000000000000000000000000000000000000000000000000000000000001543 232.0
LYD2_k127_2546895_1 Serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000005117 244.0
LYD2_k127_2546895_2 COG NOG14600 non supervised orthologous group - - - 0.0000000000000000000000000003658 113.0
LYD2_k127_2546895_3 Chaperone - - - 0.0000000000000008279 88.0
LYD2_k127_2546895_4 DNA-templated transcription, initiation K03088 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.00000003567 64.0
LYD2_k127_2546895_6 Radical SAM superfamily K06871 - - 0.00000186 57.0
LYD2_k127_2546895_7 - - - - 0.0001959 44.0
LYD2_k127_2546895_8 Domain of unknown function (DUF4440) - - - 0.0009897 48.0
LYD2_k127_2570124_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 602.0
LYD2_k127_2570124_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 382.0
LYD2_k127_2570124_2 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 292.0
LYD2_k127_2570124_3 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004144 289.0
LYD2_k127_2570124_4 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000006974 149.0
LYD2_k127_2570124_5 oligosaccharyl transferase activity - - - 0.000000000000000002922 100.0
LYD2_k127_2578902_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 592.0
LYD2_k127_2578902_1 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000976 231.0
LYD2_k127_2578902_2 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000003954 198.0
LYD2_k127_2578902_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000002368 165.0
LYD2_k127_2578902_4 phosphatidate phosphatase activity K01096,K19302 - 3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.000000000000000000000000000004116 134.0
LYD2_k127_2617184_0 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 400.0
LYD2_k127_2617184_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000002861 237.0
LYD2_k127_2617184_2 COGs COG1670 Acetyltransferase including N-acetylase of ribosomal protein K03790 - 2.3.1.128 0.000000000000000000000000000002323 132.0
LYD2_k127_2617184_3 - - - - 0.000003721 53.0
LYD2_k127_2632425_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 392.0
LYD2_k127_2632425_1 Mur ligase middle domain K01932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 323.0
LYD2_k127_2632425_2 sulfurtransferase activity K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 314.0
LYD2_k127_2632425_3 FMN-dependent dehydrogenase K16422 - 1.1.3.46 0.00000000000000000000000000000000000000000000000000000000000000000000001239 251.0
LYD2_k127_2632425_4 - - - - 0.0000000000000000000000000000000000000000000000000004374 200.0
LYD2_k127_2632425_5 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.0000000000000000000000000000000000000000000001893 177.0
LYD2_k127_2632425_6 Capsule biosynthesis CapC K22116 - - 0.000000000000000000000000000000005689 142.0
LYD2_k127_2655043_0 Phosphoribulokinase / Uridine kinase family K00855,K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.19,2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000155 219.0
LYD2_k127_2655043_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000003761 193.0
LYD2_k127_2655043_2 Tetratricopeptide repeat - - - 0.00002084 57.0
LYD2_k127_2655043_3 Belongs to the aldehyde dehydrogenase family K13821 - 1.2.1.88,1.5.5.2 0.0002103 45.0
LYD2_k127_2662017_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 548.0
LYD2_k127_2662017_1 - - - - 0.00000000000000000000000004206 109.0
LYD2_k127_2662017_2 Cold shock K03704 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000003901 107.0
LYD2_k127_2662017_3 peroxiredoxin activity K03564,K07638 - 1.11.1.15,2.7.13.3 0.0000000000000000001152 102.0
LYD2_k127_2662017_4 PFAM biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.00000000000000003855 91.0
LYD2_k127_2705726_0 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 443.0
LYD2_k127_2705726_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347,K03614 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 332.0
LYD2_k127_2705726_10 electron transfer activity K05337 - - 0.0005734 46.0
LYD2_k127_2705726_2 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000000000000000000000000000000000000000000000000000001064 244.0
LYD2_k127_2705726_3 Part of a membrane complex involved in electron transport K03612 - - 0.0000000000000000000000000000000000000000000919 176.0
LYD2_k127_2705726_4 ApbE family K03734 - 2.7.1.180 0.00000000000000000000000000000003002 139.0
LYD2_k127_2705726_5 EamA-like transporter family - - - 0.00000000000000000000000000000211 133.0
LYD2_k127_2705726_6 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000153 127.0
LYD2_k127_2705726_7 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00169 - 1.2.7.1 0.0000000000000000002203 104.0
LYD2_k127_2705726_8 TIGRFAM pyruvate ketoisovalerate oxidoreductase, gamma subunit K00172 - 1.2.7.1 0.000000009729 66.0
LYD2_k127_2705726_9 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0001577 53.0
LYD2_k127_2711237_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.203e-222 719.0
LYD2_k127_2711237_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 447.0
LYD2_k127_2711237_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 372.0
LYD2_k127_2711237_3 PFAM UbiA prenyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001565 255.0
LYD2_k127_2711237_4 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000001131 234.0
LYD2_k127_2711237_5 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate - - - 0.00000000000000000000000000000000000000000000005022 187.0
LYD2_k127_2711237_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000004753 179.0
LYD2_k127_2711237_7 SpoVG K06412 - - 0.00000000000000000000000006402 109.0
LYD2_k127_2735768_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1e-208 678.0
LYD2_k127_2735768_1 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001774 291.0
LYD2_k127_2735768_2 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003944 263.0
LYD2_k127_2735768_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00002226 57.0
LYD2_k127_2735768_4 lipopolysaccharide metabolic process K07502,K08309,K19804,K21572 - - 0.00007211 49.0
LYD2_k127_275506_0 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 329.0
LYD2_k127_275506_1 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002624 276.0
LYD2_k127_275506_2 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000005788 210.0
LYD2_k127_275506_3 Phosphotransferase System K02768,K02769,K02770 - 2.7.1.202 0.000000000000000000002768 101.0
LYD2_k127_275506_4 peptidyl-tyrosine sulfation - - - 0.000000000000007923 86.0
LYD2_k127_275506_5 C4-type zinc ribbon domain K07164 - - 0.0000006531 55.0
LYD2_k127_2800161_0 Bacterial sugar transferase K03606,K20997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008153 370.0
LYD2_k127_2800161_1 transcription factor binding K02584,K11914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 367.0
LYD2_k127_2800161_2 Glycosyl transferases group 1 K00786 - - 0.0000000000000000000000000000000000000000000007474 191.0
LYD2_k127_2800161_3 PFAM glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000002137 177.0
LYD2_k127_2800161_4 Methyltransferase domain K00568 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.1.1.222,2.1.1.64 0.000000001132 70.0
LYD2_k127_2841095_0 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000003094 252.0
LYD2_k127_2841095_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000002004 195.0
LYD2_k127_2841095_2 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000001105 99.0
LYD2_k127_294064_0 RecG wedge domain K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006428 424.0
LYD2_k127_294064_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08256 - 2.4.1.345,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000003134 262.0
LYD2_k127_294064_2 GTP binding K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.0000000000000000000000000000000000000000000000000000001711 200.0
LYD2_k127_294064_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000002257 136.0
LYD2_k127_294064_4 - - - - 0.0000000000000000000001871 106.0
LYD2_k127_294064_5 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000008911 107.0
LYD2_k127_294064_6 - - - - 0.0009664 49.0
LYD2_k127_2971703_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 413.0
LYD2_k127_2971703_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001361 248.0
LYD2_k127_2971703_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000001776 211.0
LYD2_k127_2971703_3 extracellular matrix structural constituent - - - 0.000001945 59.0
LYD2_k127_2971703_4 guanyl-nucleotide exchange factor activity K14475,K20276 - - 0.00000265 59.0
LYD2_k127_2990341_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 460.0
LYD2_k127_2990341_1 Glycosyl hydrolases family 15 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003947 287.0
LYD2_k127_2990341_2 long-chain fatty acid transport protein - - - 0.0000000000004571 82.0
LYD2_k127_2990341_3 Histidine kinase - - - 0.00009374 51.0
LYD2_k127_3033191_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 2.27e-196 642.0
LYD2_k127_3033191_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 502.0
LYD2_k127_3033191_2 PFAM carboxyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 392.0
LYD2_k127_3033191_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000005023 244.0
LYD2_k127_3033191_4 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000002987 150.0
LYD2_k127_3033191_5 Acetyl propionyl-CoA carboxylase, alpha subunit K01965,K01968 - 6.4.1.3,6.4.1.4 0.0000000000004 83.0
LYD2_k127_3042829_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 1.104e-211 689.0
LYD2_k127_3042829_1 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000009215 148.0
LYD2_k127_3042829_2 PKD domain - - - 0.000001192 62.0
LYD2_k127_3042829_3 Belongs to the glycosyl hydrolase family 6 K19668 - 3.2.1.91 0.000004757 60.0
LYD2_k127_3047425_0 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008094 588.0
LYD2_k127_3047425_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 383.0
LYD2_k127_3047425_2 PFAM Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000192 239.0
LYD2_k127_3047425_3 acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000004082 136.0
LYD2_k127_3047425_4 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000002577 111.0
LYD2_k127_3047425_5 - - - - 0.0000000000000000000000001107 111.0
LYD2_k127_3047425_6 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.0000000000000000000000002445 114.0
LYD2_k127_3047425_7 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant K07025 - - 0.000000000000000000000002727 113.0
LYD2_k127_3047425_8 Belongs to the peptidase S1C family - - - 0.00000001242 67.0
LYD2_k127_3098260_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 379.0
LYD2_k127_3098260_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 347.0
LYD2_k127_3098260_2 to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006774 312.0
LYD2_k127_3098260_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000001374 290.0
LYD2_k127_3098260_4 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004761 287.0
LYD2_k127_3098260_5 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000004254 143.0
LYD2_k127_3098260_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000001737 89.0
LYD2_k127_3130366_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008344 471.0
LYD2_k127_3130366_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008353 378.0
LYD2_k127_3130366_2 Transglycosylase SLT domain K08307,K12204 - - 0.00000000000000000000000000000000000000000000000000000000000000005024 241.0
LYD2_k127_3130366_3 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000003606 218.0
LYD2_k127_3130366_4 solute binding protein K02035 - - 0.0000000000000004206 94.0
LYD2_k127_3130922_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.468e-225 725.0
LYD2_k127_3130922_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 8.485e-219 694.0
LYD2_k127_3130922_10 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000001046 91.0
LYD2_k127_3130922_11 PFAM blue (type 1) copper domain protein - - - 0.0000000000006056 81.0
LYD2_k127_3130922_2 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 481.0
LYD2_k127_3130922_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004114 459.0
LYD2_k127_3130922_4 AIR synthase related protein, C-terminal domain K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 404.0
LYD2_k127_3130922_5 Hydrogenase accessory protein HypB K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000003441 242.0
LYD2_k127_3130922_6 Belongs to the peptidase S8 family K14645 - - 0.000000000000000000000000000000000000000000000000000000000003111 234.0
LYD2_k127_3130922_7 negative regulation of translational initiation K05554,K15885 - - 0.000000000000000000000000000003917 126.0
LYD2_k127_3130922_8 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.000000000000000000003177 100.0
LYD2_k127_3130922_9 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.00000000000000000004362 93.0
LYD2_k127_3159970_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000001782 151.0
LYD2_k127_3159970_1 lyase activity - - - 0.0000000005487 71.0
LYD2_k127_3215116_0 elongation factor G K02355 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0030312,GO:0044237,GO:0044464,GO:0071944 - 1.827e-222 709.0
LYD2_k127_3215116_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 441.0
LYD2_k127_3215116_2 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006772 306.0
LYD2_k127_3215116_3 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 316.0
LYD2_k127_3215116_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000002886 143.0
LYD2_k127_3215116_5 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000009745 137.0
LYD2_k127_3215116_6 - - - - 0.000001024 53.0
LYD2_k127_3215116_7 Belongs to the peptidase S8 family - - - 0.00001436 49.0
LYD2_k127_3244316_0 malic enzyme K00027,K00029 - 1.1.1.38,1.1.1.40 1.321e-211 681.0
LYD2_k127_3244316_1 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000005165 207.0
LYD2_k127_3244316_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000006241 164.0
LYD2_k127_3244316_3 LVIVD repeat K01179 - 3.2.1.4 0.000000002905 64.0
LYD2_k127_3252672_0 Group II intron, maturase-specific domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 330.0
LYD2_k127_3252672_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 331.0
LYD2_k127_3252672_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000001623 91.0
LYD2_k127_3322611_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1175.0
LYD2_k127_3322611_1 Catalyzes the synthesis of GMP from XMP K01951,K03790 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.3.1.128,6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 526.0
LYD2_k127_3322611_2 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000004563 270.0
LYD2_k127_3322611_3 Integrin alpha (beta-propellor repeats). - - - 0.00000000000000000000000000000000000000000000000000000000003209 235.0
LYD2_k127_3322611_5 soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009274,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000001545 127.0
LYD2_k127_3322611_6 dolichyl monophosphate biosynthetic process - - - 0.00000000000000000000000005984 120.0
LYD2_k127_3322611_7 extracellular matrix structural constituent - - - 0.0000000002912 74.0
LYD2_k127_3322611_8 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000001493 62.0
LYD2_k127_333737_0 Asparagine synthase K01953 - 6.3.5.4 4.674e-285 888.0
LYD2_k127_333737_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 536.0
LYD2_k127_333737_2 Protein of unknown function (DUF3485) - - - 0.0000000000000000000000000000000000000000000000004359 185.0
LYD2_k127_333737_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000003137 171.0
LYD2_k127_3337484_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 448.0
LYD2_k127_3337484_1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005089 297.0
LYD2_k127_3337484_2 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region - - - 0.0000000000000000000000000000000000000000000000000000006937 205.0
LYD2_k127_3337484_3 Domains HisKA, HATPase_c - - - 0.00000000000000000000000000000000006902 150.0
LYD2_k127_3337484_4 membrane transporter protein K07090 - - 0.000000000000004294 84.0
LYD2_k127_3344470_0 ABC transporter K02021,K06147,K06148,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 596.0
LYD2_k127_3344470_1 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 579.0
LYD2_k127_3344470_10 Tetratricopeptide repeat - - - 0.00000000000000004251 96.0
LYD2_k127_3344470_11 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000001897 76.0
LYD2_k127_3344470_12 peptidyl-tyrosine sulfation - - - 0.00000000001647 76.0
LYD2_k127_3344470_13 phosphate binding protein K02040 - - 0.0000000002398 70.0
LYD2_k127_3344470_2 Cys/Met metabolism PLP-dependent enzyme K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 496.0
LYD2_k127_3344470_3 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003696 423.0
LYD2_k127_3344470_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K05996,K07752 - 3.4.17.18,3.4.17.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 427.0
LYD2_k127_3344470_5 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 356.0
LYD2_k127_3344470_6 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.000000000000000000000000000000000000000000006785 178.0
LYD2_k127_3344470_7 heptosyltransferase II K02843 - - 0.000000000000000000000000000000000000000002062 169.0
LYD2_k127_3344470_8 PFAM glycosyl transferase family 9 K02843 - - 0.00000000000000000000000000007515 130.0
LYD2_k127_3344470_9 - - - - 0.000000000000000000000000006264 116.0
LYD2_k127_3352167_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 503.0
LYD2_k127_3352167_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004827 290.0
LYD2_k127_3352167_2 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008821 259.0
LYD2_k127_3352167_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000002005 194.0
LYD2_k127_3352167_4 MFS_1 like family - - - 0.00000000000000000000000000000000000000000000000000294 201.0
LYD2_k127_3352167_5 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000000165 171.0
LYD2_k127_3393038_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008182 542.0
LYD2_k127_3393038_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 467.0
LYD2_k127_3393038_2 plastoquinone (Complex I) K12141 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003832 388.0
LYD2_k127_3393038_3 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 338.0
LYD2_k127_3393038_4 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 310.0
LYD2_k127_3393038_5 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006421 302.0
LYD2_k127_3393038_6 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 291.0
LYD2_k127_3393038_7 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000001909 177.0
LYD2_k127_3437440_0 TIGRFAM Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006702 447.0
LYD2_k127_3437440_1 tRNA nucleotidyltransferase domain 2 putative K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008058 426.0
LYD2_k127_3437440_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000001443 245.0
LYD2_k127_3437440_3 Histidine kinase K14986 - 2.7.13.3 0.000000000000000000000000000000000000001665 164.0
LYD2_k127_3437440_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000001019 121.0
LYD2_k127_3459604_0 Diguanylate cyclase, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002908 285.0
LYD2_k127_3459604_1 Domains GAF, HisKA, HATPase_c, GAF, HD-GYP-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003589 277.0
LYD2_k127_3459604_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000006422 214.0
LYD2_k127_3459604_3 HD domain - - - 0.000000000000000000000000000000000000000000000002579 199.0
LYD2_k127_3459604_4 Transcriptional regulator K07658 - - 0.00000002131 60.0
LYD2_k127_3477549_0 PFAM Protein synthesis factor, GTP-binding K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 396.0
LYD2_k127_3477549_1 Peptidase S9, prolyl oligopeptidase active site domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 344.0
LYD2_k127_3477549_2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000000000000000000000000000008612 155.0
LYD2_k127_3477549_3 glyoxalase III activity - - - 0.0000000000000000000000000001937 128.0
LYD2_k127_3477549_4 Fibronectin type 3 domain - - - 0.00000000000000000007321 106.0
LYD2_k127_3477549_5 EamA-like transporter family - - - 0.000000000000000009116 85.0
LYD2_k127_3486397_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004778 591.0
LYD2_k127_3486397_1 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007144 346.0
LYD2_k127_3486397_2 ParB-like nuclease domain K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003287 269.0
LYD2_k127_3486397_3 NifU-like N terminal domain K04488 - - 0.0000000000000000000000000000000000000000000000000001088 189.0
LYD2_k127_3486397_4 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000000000000000000000003641 179.0
LYD2_k127_3513467_0 MMPL family K03296 - - 0.0 1173.0
LYD2_k127_3513467_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 491.0
LYD2_k127_3513467_10 NUDIX domain - - - 0.000000000000000000000000000000000000002713 155.0
LYD2_k127_3513467_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.00008226 45.0
LYD2_k127_3513467_2 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 436.0
LYD2_k127_3513467_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 422.0
LYD2_k127_3513467_4 response regulator K02481,K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 386.0
LYD2_k127_3513467_5 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 316.0
LYD2_k127_3513467_6 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 312.0
LYD2_k127_3513467_7 Calcineurin-like phosphoesterase K03547 - - 0.000000000000000000000000000000000000000000000000000000000000000097 243.0
LYD2_k127_3513467_8 HEAT repeats - - - 0.00000000000000000000000000000000000000000005846 182.0
LYD2_k127_3513467_9 AAA domain - - - 0.0000000000000000000000000000000000000000003742 181.0
LYD2_k127_3514025_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 565.0
LYD2_k127_3514025_1 Belongs to the peptidase S16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 407.0
LYD2_k127_3514025_2 Helix-hairpin-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001128 289.0
LYD2_k127_3514025_3 CoA binding domain K06929 - - 0.000000000000000000000000000005977 126.0
LYD2_k127_3514025_4 Transposase, Mutator family - - - 0.00000000000000000000000005523 111.0
LYD2_k127_3571735_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000007235 262.0
LYD2_k127_3571735_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000115 155.0
LYD2_k127_3571735_2 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000000003236 112.0
LYD2_k127_3571735_3 Domain of unknown function (DUF4837) - - - 0.000003988 58.0
LYD2_k127_3571735_4 Glycosyl transferase family 41 - - - 0.0001129 53.0
LYD2_k127_3571735_5 PFAM TPR repeat-containing protein - - - 0.0006407 49.0
LYD2_k127_3571735_6 AntiSigma factor - - - 0.0008956 50.0
LYD2_k127_3572889_0 Uncharacterised conserved protein (DUF2156) K07027,K14205 - 2.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001342 273.0
LYD2_k127_3572889_1 Helix-hairpin-helix motif - - - 0.000000000000009833 81.0
LYD2_k127_3572889_2 CHRD domain - - - 0.000000002054 65.0
LYD2_k127_3624554_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 576.0
LYD2_k127_3624554_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 453.0
LYD2_k127_3624554_2 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000003152 259.0
LYD2_k127_3624554_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000001724 141.0
LYD2_k127_3624554_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.00000000000000000000000000001584 125.0
LYD2_k127_3624554_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000005203 122.0
LYD2_k127_3624554_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000008611 111.0
LYD2_k127_3624554_7 Belongs to the UPF0109 family K06960 - - 0.000000000000007969 82.0
LYD2_k127_3633649_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001547 437.0
LYD2_k127_3633649_1 PFAM ATP-binding region ATPase domain protein K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000422 228.0
LYD2_k127_3633649_2 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000001401 211.0
LYD2_k127_3633649_3 DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.00001602 57.0
LYD2_k127_3633649_4 Lipopolysaccharide-assembly - - - 0.00007543 51.0
LYD2_k127_3643585_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007504 363.0
LYD2_k127_3643585_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000003273 252.0
LYD2_k127_3643585_10 Glycosyl transferase, family 9 K02841,K02843,K02847,K02849,K21003 - - 0.00000000000000000000000000000000000000008192 169.0
LYD2_k127_3643585_11 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000004331 117.0
LYD2_k127_3643585_2 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001493 256.0
LYD2_k127_3643585_3 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000005167 237.0
LYD2_k127_3643585_4 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000002957 238.0
LYD2_k127_3643585_5 Bifunctional protein - - - 0.00000000000000000000000000000000000000000000000000000000001958 230.0
LYD2_k127_3643585_6 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000001747 191.0
LYD2_k127_3643585_7 Cytidylyltransferase-like - - - 0.000000000000000000000000000000000000000000008903 168.0
LYD2_k127_3643585_8 PFAM glycosyl transferase family 9 K02843,K02849 - - 0.00000000000000000000000000000000000000000001424 179.0
LYD2_k127_3643585_9 phosphatidate cytidylyltransferase activity K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000001076 173.0
LYD2_k127_3701299_0 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 382.0
LYD2_k127_3701299_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 345.0
LYD2_k127_3701299_2 Releases the N-terminal proline from various substrates K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001216 288.0
LYD2_k127_3701299_3 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006302 276.0
LYD2_k127_3701299_4 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000005118 173.0
LYD2_k127_3701299_6 - - - - 0.0000001431 60.0
LYD2_k127_3711784_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008728,GO:0008893,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009259,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0016020,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016788,GO:0016794,GO:0019637,GO:0019693,GO:0030312,GO:0031667,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042278,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046128,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:1901068,GO:1901135,GO:1901360,GO:1901564,GO:1901657 2.7.6.5 5.407e-204 660.0
LYD2_k127_3711784_1 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 464.0
LYD2_k127_3711784_2 PFAM Maf family protein K06287 - - 0.0000000000000000000000000000000000000000001003 167.0
LYD2_k127_3711784_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000000000000000000006074 171.0
LYD2_k127_3711784_4 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000002159 126.0
LYD2_k127_3717967_0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000006653 263.0
LYD2_k127_3717967_1 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000002903 243.0
LYD2_k127_3717967_2 neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000495 235.0
LYD2_k127_3717967_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.0000000000000000000000000001699 116.0
LYD2_k127_3717967_4 Evidence 5 No homology to any previously reported sequences - - - 0.00000000001133 74.0
LYD2_k127_3717967_5 PPIC-type PPIASE domain K07533 - 5.2.1.8 0.000005265 57.0
LYD2_k127_3740042_0 PFAM glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 427.0
LYD2_k127_3740042_1 7TM receptor with intracellular HD hydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 377.0
LYD2_k127_3740042_2 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 331.0
LYD2_k127_3740042_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000001148 268.0
LYD2_k127_3740042_4 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000003074 164.0
LYD2_k127_3740042_5 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K01489,K07042 - 3.5.4.5 0.000000000000000000000005773 109.0
LYD2_k127_3740042_6 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000003636 100.0
LYD2_k127_3740042_7 PFAM Peptidoglycan-binding lysin domain - - - 0.00000000006466 69.0
LYD2_k127_3778679_0 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002719 239.0
LYD2_k127_3778679_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000003049 247.0
LYD2_k127_3778679_3 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000004194 122.0
LYD2_k127_3778679_5 - - - - 0.00000001893 64.0
LYD2_k127_3778679_6 - - - - 0.0003097 51.0
LYD2_k127_3812911_0 Heat shock 70 kDa protein K04043 - - 7.553e-279 870.0
LYD2_k127_3812911_1 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002958 372.0
LYD2_k127_3812911_2 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 304.0
LYD2_k127_3812911_3 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001388 282.0
LYD2_k127_3812911_4 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001191 274.0
LYD2_k127_3812911_5 -O-antigen - - - 0.000000000000000000000000000000000001446 160.0
LYD2_k127_3812911_6 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000001208 113.0
LYD2_k127_3818565_0 ERAP1-like C-terminal domain K01256,K01263 - 3.4.11.14,3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000006563 236.0
LYD2_k127_3818565_1 PFAM glycoside hydrolase, family 1 K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000001819 218.0
LYD2_k127_3818565_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000001153 211.0
LYD2_k127_3818565_3 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000004353 194.0
LYD2_k127_3818565_4 Evidence 5 No homology to any previously reported sequences - - - 0.00000000006881 76.0
LYD2_k127_3853898_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 405.0
LYD2_k127_3853898_1 PFAM EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001264 277.0
LYD2_k127_3853898_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella K01195 - 3.2.1.31 0.00000000000000000000000000000001028 145.0
LYD2_k127_3853898_3 gluconolactonase activity K01053,K01179,K07214,K12287 - 3.1.1.17,3.2.1.4 0.00000000000000000001022 107.0
LYD2_k127_3853898_4 TonB-dependent receptor - - - 0.000003437 59.0
LYD2_k127_3853898_5 extracellular matrix structural constituent - - - 0.000306 53.0
LYD2_k127_3854633_0 L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 615.0
LYD2_k127_3854633_1 Cys/Met metabolism PLP-dependent enzyme K01760,K01761 - 4.4.1.11,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 514.0
LYD2_k127_3854633_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006189 385.0
LYD2_k127_3854633_3 VanZ like family - - - 0.0000000001664 74.0
LYD2_k127_3856621_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 497.0
LYD2_k127_3856621_1 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009902 402.0
LYD2_k127_3856621_10 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000985 186.0
LYD2_k127_3856621_11 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000003366 177.0
LYD2_k127_3856621_12 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000009761 171.0
LYD2_k127_3856621_13 lysyltransferase activity K07027 - - 0.00000000000000000000000000024 132.0
LYD2_k127_3856621_14 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000001958 118.0
LYD2_k127_3856621_15 Glycosyl transferase, family 2 K07011 - - 0.00000000000000000000005423 112.0
LYD2_k127_3856621_16 extracellular matrix structural constituent - - - 0.0000000000000004425 93.0
LYD2_k127_3856621_17 S-layer homology domain - - - 0.000533 53.0
LYD2_k127_3856621_2 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 330.0
LYD2_k127_3856621_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006066 316.0
LYD2_k127_3856621_4 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 324.0
LYD2_k127_3856621_5 GDP-mannose 4,6 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 301.0
LYD2_k127_3856621_6 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008628 282.0
LYD2_k127_3856621_7 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000001328 216.0
LYD2_k127_3856621_8 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000001784 216.0
LYD2_k127_3856621_9 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000002905 206.0
LYD2_k127_3887940_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1049.0
LYD2_k127_3887940_1 growth of symbiont in host cell K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003114 573.0
LYD2_k127_3887940_2 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 406.0
LYD2_k127_3887940_3 - K00241 - - 0.000000000000000000000000000000000000000000000000000000000000000000001294 249.0
LYD2_k127_3887940_4 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000001421 133.0
LYD2_k127_3887940_5 - - - - 0.0000000000000000004768 90.0
LYD2_k127_3887940_6 Putative Ig domain - - - 0.000000007645 68.0
LYD2_k127_3907554_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 545.0
LYD2_k127_3907554_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 421.0
LYD2_k127_3907554_2 PFAM AMP-dependent synthetase and ligase K01911 - 6.2.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004614 353.0
LYD2_k127_3907554_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000005366 281.0
LYD2_k127_3907554_4 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) - - - 0.00000000000000000000000005901 112.0
LYD2_k127_3907554_5 Pkd domain containing protein - - - 0.0000000000000000000003408 112.0
LYD2_k127_3907554_6 PFAM thioesterase superfamily K12073 - 3.1.2.28 0.000000000000000000008822 97.0
LYD2_k127_3907554_7 Histidine triad domain protein K02503 - - 0.00000000000000000009681 92.0
LYD2_k127_3907554_9 - - - - 0.00007383 51.0
LYD2_k127_3916103_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 576.0
LYD2_k127_3916103_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035596,GO:0035597,GO:0035600,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050497,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 494.0
LYD2_k127_3916103_10 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000000000003011 173.0
LYD2_k127_3916103_11 Protein involved in meta-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000004073 163.0
LYD2_k127_3916103_12 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000595 153.0
LYD2_k127_3916103_13 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000001219 145.0
LYD2_k127_3916103_14 CDP-alcohol phosphatidyltransferase - - - 0.0000000000000000000000000003703 125.0
LYD2_k127_3916103_15 Doxx family K15977 - - 0.000000000000000000000005901 119.0
LYD2_k127_3916103_16 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000001133 101.0
LYD2_k127_3916103_17 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000000002272 101.0
LYD2_k127_3916103_18 Rdx family K07401 - - 0.000000000005436 67.0
LYD2_k127_3916103_2 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 482.0
LYD2_k127_3916103_3 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 383.0
LYD2_k127_3916103_4 dUTPase K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000643 308.0
LYD2_k127_3916103_5 PFAM 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 294.0
LYD2_k127_3916103_6 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000259 286.0
LYD2_k127_3916103_7 Peptidase M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000001741 220.0
LYD2_k127_3916103_8 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000004261 206.0
LYD2_k127_3916103_9 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000000000000000000002683 209.0
LYD2_k127_3954863_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360 - 4.826e-228 727.0
LYD2_k127_3954863_1 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 5.432e-221 706.0
LYD2_k127_3954863_10 MerR, DNA binding K19591 - - 0.000000000000000000000000000000000001052 146.0
LYD2_k127_3954863_11 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000002112 145.0
LYD2_k127_3954863_12 of nitrite reductase and ring-hydroxylating K05710 - - 0.0000000000000000000000008204 113.0
LYD2_k127_3954863_13 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000001483 114.0
LYD2_k127_3954863_14 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000002743 99.0
LYD2_k127_3954863_15 Iron-sulfur cluster assembly protein - - - 0.0000000000007269 76.0
LYD2_k127_3954863_16 Membrane - - - 0.00000002744 66.0
LYD2_k127_3954863_17 Predicted integral membrane protein (DUF2269) - - - 0.00003051 52.0
LYD2_k127_3954863_18 Copper binding proteins, plastocyanin/azurin family - - - 0.00004539 53.0
LYD2_k127_3954863_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 516.0
LYD2_k127_3954863_3 ATPases associated with a variety of cellular activities K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 360.0
LYD2_k127_3954863_4 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 367.0
LYD2_k127_3954863_5 Conserved hypothetical protein 698 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001792 284.0
LYD2_k127_3954863_6 Phosphoesterase, PA-phosphatase related protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000702 254.0
LYD2_k127_3954863_7 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000012 236.0
LYD2_k127_3954863_8 NifU-like N terminal domain K04488 - - 0.0000000000000000000000000000000000000001325 167.0
LYD2_k127_3954863_9 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.000000000000000000000000000000000000000234 155.0
LYD2_k127_3956983_0 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004425 288.0
LYD2_k127_3956983_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000004832 211.0
LYD2_k127_3956983_2 Probable zinc-ribbon domain - - - 0.00000000000000000000000000000004441 128.0
LYD2_k127_3956983_3 'Cold-shock' DNA-binding domain K03704 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000007593 96.0
LYD2_k127_4026849_0 PFAM AAA ATPase central domain protein K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 327.0
LYD2_k127_4026849_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008654 299.0
LYD2_k127_4026849_2 RelA SpoT domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001361 238.0
LYD2_k127_4026849_3 Highly conserved protein containing a thioredoxin domain K06888 - - 0.00000000000000000000000000000000000000000000001202 190.0
LYD2_k127_4026849_4 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000001955 158.0
LYD2_k127_4026849_5 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000325 137.0
LYD2_k127_4026849_6 COG2143 Thioredoxin-related protein K04084 - 1.8.1.8 0.00000000000000000000000000001488 126.0
LYD2_k127_4026849_7 - - - - 0.000000000000000000000001367 108.0
LYD2_k127_4026849_8 - - - - 0.0000009123 60.0
LYD2_k127_4026849_9 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00007396 53.0
LYD2_k127_4059830_0 Myo-inositol-1-phosphate synthase K01858 GO:0003674,GO:0003824,GO:0004512,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009405,GO:0009987,GO:0010125,GO:0010126,GO:0016137,GO:0016138,GO:0016853,GO:0016872,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044272,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1901657,GO:1901659 5.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 602.0
LYD2_k127_4059830_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005662 404.0
LYD2_k127_4059830_2 Belongs to the LarC family K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000874 318.0
LYD2_k127_4059830_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000176 287.0
LYD2_k127_4059830_4 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000001174 270.0
LYD2_k127_4059830_5 (AIR) carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000004859 249.0
LYD2_k127_4059830_6 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000008953 211.0
LYD2_k127_4059830_7 PFAM ABC transporter related K16786,K16787 - - 0.0000000000000000000000000000000000000000000000000000001744 216.0
LYD2_k127_4059830_8 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000002561 147.0
LYD2_k127_4059830_9 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000001567 131.0
LYD2_k127_4079720_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008968 533.0
LYD2_k127_4079720_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000001273 216.0
LYD2_k127_4079720_2 amine dehydrogenase activity - - - 0.000000000001183 79.0
LYD2_k127_4079720_3 Tetratricopeptide repeat - - - 0.00007186 53.0
LYD2_k127_4092127_0 Peptidase M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 378.0
LYD2_k127_4092127_1 Jacalin-like lectin domain - - - 0.0000000001202 65.0
LYD2_k127_4092127_2 Resolvase K06400 - - 0.00006285 51.0
LYD2_k127_4099037_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K04127,K11325,K21174 - 5.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 538.0
LYD2_k127_4099037_1 Amidinotransferase K01482 - 3.5.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000983 280.0
LYD2_k127_4099037_2 PFAM Abortive infection protein - - - 0.000000000000000000000000000000000000000004314 162.0
LYD2_k127_4099037_3 NmrA-like family - - - 0.00000000000000000000000000004104 129.0
LYD2_k127_4099037_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000009533 63.0
LYD2_k127_4108737_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 302.0
LYD2_k127_4108737_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000002684 180.0
LYD2_k127_4108737_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000002826 158.0
LYD2_k127_4108737_3 Phosphoribosyl transferase domain - - - 0.000000000000000000000004701 113.0
LYD2_k127_4110875_0 Protein of unknown function (DUF933) K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 344.0
LYD2_k127_4110875_1 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000009471 226.0
LYD2_k127_4156165_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 2.356e-194 632.0
LYD2_k127_4156165_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009892 617.0
LYD2_k127_4156165_10 FeoA K04758 - - 0.0000000000000001328 88.0
LYD2_k127_4156165_11 Capsule assembly protein Wzi - - - 0.00000000002296 77.0
LYD2_k127_4156165_12 - - - - 0.00000000008895 74.0
LYD2_k127_4156165_13 esterase - - - 0.000001857 62.0
LYD2_k127_4156165_14 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K05996,K06987,K07752 - 3.4.17.18,3.4.17.22 0.00006678 57.0
LYD2_k127_4156165_15 COG3637 Opacity protein and related surface antigens - - - 0.0001929 53.0
LYD2_k127_4156165_2 M42 glutamyl aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006832 392.0
LYD2_k127_4156165_3 TIGRFAM glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005873 346.0
LYD2_k127_4156165_4 6-phosphogluconolactonase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007101 296.0
LYD2_k127_4156165_5 water channel activity K02440,K06188,K09874 - - 0.00000000000000000000000000000000000000000000000000001181 197.0
LYD2_k127_4156165_6 Protein of unknown function (DUF421) - - - 0.00000000000000000000000000000000000000000000000009552 182.0
LYD2_k127_4156165_7 - - - - 0.00000000000000000000000000000000000000000000001904 176.0
LYD2_k127_4156165_8 DinB superfamily - - - 0.000000000000000000000000000000000003094 145.0
LYD2_k127_4156165_9 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.00000000000000000001385 99.0
LYD2_k127_4217436_0 PFAM peptidase M24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 371.0
LYD2_k127_4217436_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 348.0
LYD2_k127_4217436_2 Metallopeptidase family M24 K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001847 286.0
LYD2_k127_4217436_3 ABC transporter K01990,K09697 - 3.6.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000003953 269.0
LYD2_k127_4217436_4 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000002153 144.0
LYD2_k127_4217436_5 PFAM ABC-2 type transporter K09696 - - 0.0000000000000000000000000000000001002 147.0
LYD2_k127_4245684_0 4Fe-4S binding domain - - - 2.306e-261 826.0
LYD2_k127_4245684_1 TGS domain K06944 - - 0.0000000000000000000000000000000000000000000000000000000000000000001162 234.0
LYD2_k127_4245684_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000236 211.0
LYD2_k127_4245684_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000005196 179.0
LYD2_k127_4245684_4 Aminoacyl-tRNA editing domain K19055 - - 0.000000000000000000000000000000000000004618 151.0
LYD2_k127_4245684_5 integral membrane protein - - - 0.000000000000000000000000003056 119.0
LYD2_k127_4295955_0 abc transporter atp-binding protein K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 392.0
LYD2_k127_4295955_1 Methyltransferase FkbM family - - - 0.00000000000000000000000000000000000000000000000000000000000000000005015 240.0
LYD2_k127_4295955_2 Inner membrane component domain - - - 0.000000000000000000000000000000000000000000000001735 183.0
LYD2_k127_4295955_3 Sugar (and other) transporter K08369 - - 0.00002707 56.0
LYD2_k127_4301127_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 602.0
LYD2_k127_4301127_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003808 473.0
LYD2_k127_4301127_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000004341 267.0
LYD2_k127_4301127_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000191 135.0
LYD2_k127_4301127_4 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.000000007047 67.0
LYD2_k127_4301127_5 Bacterial Ig-like domain - - - 0.000007143 57.0
LYD2_k127_4301127_6 Binds directly to 16S ribosomal RNA K02968 - - 0.00004955 49.0
LYD2_k127_437289_0 Peptidase family S41 - - - 3.004e-245 778.0
LYD2_k127_437289_1 Thermophilic metalloprotease (M29) K19689 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009698 473.0
LYD2_k127_437289_3 PFAM Major Facilitator Superfamily K08223 - - 0.000000003829 61.0
LYD2_k127_439250_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 7.991e-248 777.0
LYD2_k127_439250_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 536.0
LYD2_k127_439250_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 496.0
LYD2_k127_439250_3 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 492.0
LYD2_k127_439250_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000008545 215.0
LYD2_k127_439250_5 Alpha-amylase domain K01176 - 3.2.1.1 0.00000000000000000000000000000000002613 154.0
LYD2_k127_4484214_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0022900,GO:0022904,GO:0034220,GO:0044237,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.9.3.1 1.916e-226 719.0
LYD2_k127_4484214_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000002321 218.0
LYD2_k127_4484214_2 Cytochrome c oxidase subunit III - - - 0.00000000000000000000000000000000000000000000000000000008944 201.0
LYD2_k127_4484214_3 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009319,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0042773,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070069,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.9.3.1 0.00000000000000000000000000000000000000000000000000001341 199.0
LYD2_k127_4484214_4 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000004187 177.0
LYD2_k127_4484214_5 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.9.3.1 0.0000000000000000000000000000001287 132.0
LYD2_k127_4484214_6 4Fe-4S single cluster domain K10026 - 4.3.99.3 0.000000000000000000000000976 116.0
LYD2_k127_4484214_7 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000001046 54.0
LYD2_k127_4485833_0 Enoyl-(Acyl carrier protein) reductase K10780 - 1.3.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004508 281.0
LYD2_k127_4485833_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000001083 220.0
LYD2_k127_4485833_2 membrane - - - 0.000000000000000000000000000000000000000000000000000000009608 214.0
LYD2_k127_4485833_3 Metallo-peptidase family M12 - - - 0.000000000000000000000000002643 129.0
LYD2_k127_4485833_4 membrane - - - 0.000000002587 68.0
LYD2_k127_4485833_5 cellulase activity K01361,K20276 - 3.4.21.96 0.000004196 60.0
LYD2_k127_4513853_0 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003288 246.0
LYD2_k127_4513853_1 lipoprotein localization to outer membrane K02004 - - 0.0000000000000000000000000000000000000000000000000000004528 212.0
LYD2_k127_4513853_2 PFAM ABC transporter related K02193 - 3.6.3.41 0.00000000000000000000000000000000000000002592 160.0
LYD2_k127_4513853_3 Cytochrome c assembly protein K02195 - - 0.000000000000000000000000000000000000001911 164.0
LYD2_k127_4513853_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000008089 99.0
LYD2_k127_4513853_5 PFAM Cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000000002723 85.0
LYD2_k127_4557104_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 3.399e-204 660.0
LYD2_k127_4557104_1 Acyl-protein synthetase, LuxE - - - 0.00000000000000000000000000000000000000000000000000000008487 218.0
LYD2_k127_4557104_2 Acyl-CoA reductase (LuxC) - - - 0.000000000000000000000000000000000000000000002829 187.0
LYD2_k127_4557104_3 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000001135 106.0
LYD2_k127_4557104_4 Belongs to the GcvT family K06980 - - 0.0000000000000000000005515 109.0
LYD2_k127_4557104_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000002403 75.0
LYD2_k127_4557104_6 LVIVD repeat K01179 - 3.2.1.4 0.00000000000003051 87.0
LYD2_k127_4557104_7 Zinc-dependent metalloprotease - - - 0.00000000000003475 87.0
LYD2_k127_4557104_8 - - - - 0.00000000000004674 82.0
LYD2_k127_4557104_9 cellulose binding - - - 0.000000000002189 81.0
LYD2_k127_4559298_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1177.0
LYD2_k127_4559298_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 6.309e-228 712.0
LYD2_k127_4559298_2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 2.068e-204 651.0
LYD2_k127_4559298_3 metallophosphoesterase K07096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006401 276.0
LYD2_k127_456089_0 Peptidase family M3 K01392 - 3.4.24.15 7.324e-203 651.0
LYD2_k127_456089_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 478.0
LYD2_k127_456089_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism - - - 0.0000000000000000000000000000000000000000009578 162.0
LYD2_k127_456089_3 Uncharacterized conserved protein (DUF2249) - - - 0.0008329 48.0
LYD2_k127_4586655_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009653 325.0
LYD2_k127_4586655_1 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain - - - 0.000000000000000000000000000000000000000000000000000000004054 224.0
LYD2_k127_4586655_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000002084 198.0
LYD2_k127_4586655_3 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000001114 177.0
LYD2_k127_4586655_4 - - - - 0.00000000000000000000000000000000002364 153.0
LYD2_k127_4586655_5 response regulator K07315 - 3.1.3.3 0.00000000000000000000004995 108.0
LYD2_k127_476399_0 pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 465.0
LYD2_k127_476399_1 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002184 380.0
LYD2_k127_476399_10 Protein of unknown function (DUF3303) - - - 0.0000000000000000000000000000000004113 132.0
LYD2_k127_476399_11 DsrC like protein K11179 - - 0.0000000000000000000000000000003059 127.0
LYD2_k127_476399_12 DinB superfamily - - - 0.0000000000000000000000002418 111.0
LYD2_k127_476399_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 387.0
LYD2_k127_476399_3 Dehydrogenase K15054 - 1.1.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 368.0
LYD2_k127_476399_4 Domain of Unknown Function (DUF1259) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 346.0
LYD2_k127_476399_5 tRNA m6t6A37 methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000006603 219.0
LYD2_k127_476399_6 3-demethylubiquinone-9 3-O-methyltransferase activity K00568,K20444 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000003237 230.0
LYD2_k127_476399_7 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000000000000000000000000000168 201.0
LYD2_k127_476399_8 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000001637 186.0
LYD2_k127_476399_9 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000003773 168.0
LYD2_k127_4841889_0 Beta-eliminating lyase K01667 - 4.1.99.1 2.08e-205 648.0
LYD2_k127_4841889_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 466.0
LYD2_k127_4841889_2 domain protein K13735,K15125,K20276 - - 0.00000000000000000000000000000000000001438 168.0
LYD2_k127_4841889_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000006184 131.0
LYD2_k127_4841889_4 NmrA-like family K00091 - 1.1.1.219 0.00000000000002357 87.0
LYD2_k127_4841889_5 OmpA family - - - 0.000000000631 64.0
LYD2_k127_4841889_6 ompA family - - - 0.0000009138 61.0
LYD2_k127_4841889_7 Outer membrane lipoprotein - - - 0.00007815 56.0
LYD2_k127_4873571_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 329.0
LYD2_k127_4873571_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000001496 276.0
LYD2_k127_4873571_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.00000000000000005561 83.0
LYD2_k127_4921181_0 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005046 419.0
LYD2_k127_4921181_1 benzoyl-CoA reductase K04113 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 410.0
LYD2_k127_4921181_2 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005812 315.0
LYD2_k127_4921181_3 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 296.0
LYD2_k127_4921181_4 BadF/BadG/BcrA/BcrD ATPase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003353 278.0
LYD2_k127_4921181_5 Short chain dehydrogenase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000001753 206.0
LYD2_k127_4921181_6 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000004634 136.0
LYD2_k127_4921181_7 PFAM ATPase, BadF BadG BcrA BcrD type - - - 0.000000000005518 72.0
LYD2_k127_4925350_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 502.0
LYD2_k127_4925350_1 PSP1 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005514 265.0
LYD2_k127_4925350_2 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000000000000004001 233.0
LYD2_k127_4925350_3 TatD related DNase K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.000000000000000000000000000000000000000000000000000681 198.0
LYD2_k127_4925350_4 Peptidase family M23 K21471 GO:0000920,GO:0001896,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008219,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0012501,GO:0016020,GO:0016787,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0042221,GO:0042493,GO:0042546,GO:0042597,GO:0043085,GO:0044085,GO:0044093,GO:0044464,GO:0050790,GO:0050896,GO:0051301,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071554,GO:0071840,GO:0071944 - 0.00000000000000000000000000000000000000000000000002985 203.0
LYD2_k127_4925350_5 PPIC-type PPIASE domain K03769,K03771,K07533 - 5.2.1.8 0.000000000000000000000000000000000000000000000000258 193.0
LYD2_k127_4925350_6 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000002347 181.0
LYD2_k127_4925350_7 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000004748 160.0
LYD2_k127_4925350_8 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811,K09812 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.00000000000000000002463 106.0
LYD2_k127_4925350_9 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.0003982 46.0
LYD2_k127_5056772_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001384 305.0
LYD2_k127_5056772_1 Adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000008515 226.0
LYD2_k127_5056772_2 metallocarboxypeptidase activity - - - 0.0000000000000002251 94.0
LYD2_k127_5061029_0 Transketolase, pyrimidine binding domain K00162,K00167,K21417 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944,GO:0140030,GO:0140032 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 439.0
LYD2_k127_5061029_1 Dehydrogenase E1 component K00161,K00166,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000392 396.0
LYD2_k127_5061029_2 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000006481 233.0
LYD2_k127_5061029_3 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000003764 159.0
LYD2_k127_5089354_0 Peptidase family M3 K01392 - 3.4.24.15 3.397e-194 628.0
LYD2_k127_5089354_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008209 474.0
LYD2_k127_5089354_2 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 326.0
LYD2_k127_5089354_3 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 301.0
LYD2_k127_5089354_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001786 267.0
LYD2_k127_5089354_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001216 267.0
LYD2_k127_5089354_6 Transposase DDE domain group 1 - - - 0.00000003088 57.0
LYD2_k127_5089354_7 RIO1 family K01090,K12132 - 2.7.11.1,3.1.3.16 0.00001443 54.0
LYD2_k127_5124953_0 OPT oligopeptide transporter protein - - - 3.037e-200 650.0
LYD2_k127_5124953_1 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005318 529.0
LYD2_k127_5124953_2 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006198 476.0
LYD2_k127_5124953_3 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00180 - 1.2.7.8 0.00000000000000000000000000001285 122.0
LYD2_k127_5124953_4 CAAX protease self-immunity K07052 - - 0.00000000000000000000000001555 121.0
LYD2_k127_5124953_5 metallopeptidase activity - - - 0.000000000000006201 87.0
LYD2_k127_5124953_6 extracellular matrix structural constituent - - - 0.0000000000229 76.0
LYD2_k127_512524_0 queuine tRNA-ribosyltransferase activity K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 352.0
LYD2_k127_512524_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 319.0
LYD2_k127_512524_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000211 251.0
LYD2_k127_512524_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000005568 220.0
LYD2_k127_512524_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000008927 177.0
LYD2_k127_512524_5 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000004441 179.0
LYD2_k127_512524_6 TIGRFAM preprotein translocase, YajC subunit K03210 - - 0.0000000000000000000001457 100.0
LYD2_k127_512524_7 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000001127 73.0
LYD2_k127_5137755_0 involved in signal transduction (via phosphorylation) involved in transcriptional regulatory mechanism and in the regulation of secondary metabolites catalytic activity ATP a protein ADP a phosphoprotein K08282 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009278 569.0
LYD2_k127_5137755_1 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008612 460.0
LYD2_k127_5137755_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 424.0
LYD2_k127_5137755_3 SWI complex, BAF60b domains - - - 0.00000000000000000000000000000002436 128.0
LYD2_k127_5137755_4 PFAM Nucleotidyl transferase K00971 - 2.7.7.13 0.0000000000000000004419 91.0
LYD2_k127_5137755_5 - - - - 0.00002314 47.0
LYD2_k127_514588_0 Glycosyltransferase family 20 K16055 - 2.4.1.15,3.1.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005205 449.0
LYD2_k127_514588_1 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.000000000000000000000000000000000000000004832 166.0
LYD2_k127_514588_10 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.0004055 49.0
LYD2_k127_514588_2 Transporter, MotA TolQ ExbB proton channel family protein K03561 - - 0.0000000000000000002937 101.0
LYD2_k127_514588_3 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000005315 87.0
LYD2_k127_514588_4 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.0000000000675 72.0
LYD2_k127_514588_5 peptidyl-tyrosine sulfation - - - 0.0000001152 61.0
LYD2_k127_514588_6 transferase activity, transferring glycosyl groups - - - 0.0000001707 62.0
LYD2_k127_514588_7 Gram-negative bacterial TonB protein C-terminal - - - 0.000000571 61.0
LYD2_k127_514588_8 CmpX protein - - - 0.000001304 58.0
LYD2_k127_514588_9 ompA family - - - 0.0001641 53.0
LYD2_k127_5152517_0 serine-type peptidase activity K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 367.0
LYD2_k127_5152517_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000007484 239.0
LYD2_k127_5152517_2 Metal-dependent phosphohydrolase, HD region - - - 0.00000000000000000000000000000000000000000000000000000000001584 223.0
LYD2_k127_5152517_3 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000008695 217.0
LYD2_k127_5152517_4 PFAM Integral membrane protein TerC - - - 0.000000000000000000000000000000000000003475 165.0
LYD2_k127_5152517_5 sigma factor antagonist activity K04757,K06379,K08282 - 2.7.11.1 0.00000000000000000005551 95.0
LYD2_k127_5152517_6 signal peptide peptidase K04773 - - 0.00005834 50.0
LYD2_k127_5184792_0 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 460.0
LYD2_k127_5184792_1 fatty acid desaturase K00508 - 1.14.19.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 439.0
LYD2_k127_5184792_2 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005886 361.0
LYD2_k127_5184792_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008677 314.0
LYD2_k127_5184792_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000004564 183.0
LYD2_k127_5253955_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 2.073e-295 918.0
LYD2_k127_5253955_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 403.0
LYD2_k127_5253955_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 355.0
LYD2_k127_5253955_3 Pyruvate ferredoxin oxidoreductase and related K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001276 283.0
LYD2_k127_5253955_4 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009335 267.0
LYD2_k127_5253955_5 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001144 266.0
LYD2_k127_5258957_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008684 602.0
LYD2_k127_5258957_1 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 485.0
LYD2_k127_5258957_2 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001293 280.0
LYD2_k127_5258957_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000008431 242.0
LYD2_k127_5258957_4 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000004196 190.0
LYD2_k127_5258957_5 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000002251 187.0
LYD2_k127_5258957_6 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000001544 180.0
LYD2_k127_5265504_0 PFAM aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 457.0
LYD2_k127_5265504_1 nickel cation binding K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 388.0
LYD2_k127_5265504_2 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006782 338.0
LYD2_k127_5265504_3 Putative Fe-S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 312.0
LYD2_k127_5265504_4 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000005944 172.0
LYD2_k127_5265504_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000000000000003233 132.0
LYD2_k127_5265504_6 Patatin-like phospholipase K07001 - - 0.00000008592 59.0
LYD2_k127_5265504_7 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000001662 59.0
LYD2_k127_5265504_8 Urate oxidase N-terminal - - - 0.00001443 53.0
LYD2_k127_5265504_9 - - - - 0.00004701 56.0
LYD2_k127_5291948_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 320.0
LYD2_k127_5291948_1 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000022 232.0
LYD2_k127_5291948_2 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.000000000000000000000000000000000000000000000001217 178.0
LYD2_k127_5291948_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000003151 176.0
LYD2_k127_5291948_4 Histidine kinase K10681 - 2.7.13.3 0.000000000000000000000000000000000000000000003596 183.0
LYD2_k127_5291948_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00002134 54.0
LYD2_k127_5301220_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 355.0
LYD2_k127_5301220_1 protein maturation K13628 - - 0.0000000000000000000000000000000756 136.0
LYD2_k127_5301220_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00363,K05710 - 1.7.1.15 0.00000000000000000000001846 104.0
LYD2_k127_5301220_3 AMP-binding enzyme C-terminal domain K00666,K01897 - 6.2.1.3 0.0000000000000006298 81.0
LYD2_k127_5301220_4 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000008397 64.0
LYD2_k127_5301220_5 Carboxypeptidase regulatory-like domain - - - 0.0000001228 61.0
LYD2_k127_535417_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008227 490.0
LYD2_k127_535417_1 Belongs to the proline racemase family K01777,K12658 - 5.1.1.4,5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 413.0
LYD2_k127_535417_2 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000005167 237.0
LYD2_k127_535417_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000003414 123.0
LYD2_k127_535417_4 NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000001004 76.0
LYD2_k127_5358516_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 514.0
LYD2_k127_5358516_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01007,K08483 - 2.7.3.9,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 486.0
LYD2_k127_5358516_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000479 335.0
LYD2_k127_5358516_3 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 312.0
LYD2_k127_5358516_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000001106 231.0
LYD2_k127_5358516_5 Bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.000000000000000000000000000000000000000000000000000000008477 219.0
LYD2_k127_5358516_6 PTS system mannose fructose sorbose family IID component K02795,K02796,K02815 - - 0.00000000000000000000000001147 125.0
LYD2_k127_5358516_7 PTS system sorbose subfamily IIB component K02794,K19507 - 2.7.1.191 0.000000000000000000000001644 112.0
LYD2_k127_5358516_8 phosphocarrier protein HPr K11189 - - 0.00000000000000000000009256 100.0
LYD2_k127_5358516_9 system, fructose subfamily IIA component K02793,K02794 - 2.7.1.191 0.00000000000000001312 88.0
LYD2_k127_5367119_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 445.0
LYD2_k127_5367119_1 PFAM SAICAR synthetase K01923,K13713 - 6.3.2.6,6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004487 353.0
LYD2_k127_5367119_2 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000005008 85.0
LYD2_k127_5404430_0 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 492.0
LYD2_k127_5404430_1 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 364.0
LYD2_k127_5404430_2 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000001187 227.0
LYD2_k127_5404430_3 Tetratricopeptide repeat - - - 0.000000000000000000000000005742 127.0
LYD2_k127_5404430_4 Tetratricopeptide repeats - - - 0.00000000000586 79.0
LYD2_k127_5430982_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005627 529.0
LYD2_k127_5430982_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 494.0
LYD2_k127_5430982_10 Bacillithiol biosynthesis BshC K22136 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008062 287.0
LYD2_k127_5430982_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001207 254.0
LYD2_k127_5430982_12 ZIP Zinc transporter K07238,K11021,K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000009516 241.0
LYD2_k127_5430982_13 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000009193 224.0
LYD2_k127_5430982_14 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.00000000000000000000000000000000000000000000000000000002765 222.0
LYD2_k127_5430982_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00337,K00338 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000000000004041 190.0
LYD2_k127_5430982_16 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000009528 178.0
LYD2_k127_5430982_17 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000003781 154.0
LYD2_k127_5430982_18 GAF domain K08968 - 1.8.4.14 0.000000000000000000000000000001015 128.0
LYD2_k127_5430982_19 Dimerisation domain - - - 0.000000000000000000000000006922 123.0
LYD2_k127_5430982_2 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 450.0
LYD2_k127_5430982_3 Glycosyl transferases group 1 K00754 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004188 424.0
LYD2_k127_5430982_4 adenosine deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 383.0
LYD2_k127_5430982_5 NfeD-like C-terminal, partner-binding K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 381.0
LYD2_k127_5430982_6 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 372.0
LYD2_k127_5430982_7 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 347.0
LYD2_k127_5430982_8 NAD(P)-binding Rossmann-like domain K00303 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 319.0
LYD2_k127_5430982_9 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009103 296.0
LYD2_k127_54345_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 3.292e-276 863.0
LYD2_k127_54345_1 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K00087 - 1.17.1.4 2.822e-249 803.0
LYD2_k127_54345_10 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000289 194.0
LYD2_k127_54345_11 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000002087 172.0
LYD2_k127_54345_12 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.00000000000000000000000000000000007 142.0
LYD2_k127_54345_13 response to heat K07090 - - 0.00000000000000000000000000001377 132.0
LYD2_k127_54345_14 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000002562 83.0
LYD2_k127_54345_2 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 585.0
LYD2_k127_54345_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 340.0
LYD2_k127_54345_4 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03635,K03637 - 2.8.1.12,4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 318.0
LYD2_k127_54345_5 Selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009575 300.0
LYD2_k127_54345_6 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000002849 265.0
LYD2_k127_54345_7 OsmC-like protein K04063 - - 0.00000000000000000000000000000000000000000000000000000005224 201.0
LYD2_k127_54345_8 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000004738 214.0
LYD2_k127_54345_9 PFAM MOSC domain - - - 0.00000000000000000000000000000000000000000000000001369 188.0
LYD2_k127_5443324_0 8-amino-7-oxononanoate synthase activity K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 474.0
LYD2_k127_5443324_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004193 460.0
LYD2_k127_5443324_10 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000000003664 102.0
LYD2_k127_5443324_11 Protein of unknown function (DUF1295) - - - 0.000000000000000004367 97.0
LYD2_k127_5443324_13 Copper binding proteins, plastocyanin/azurin family - - - 0.0004119 48.0
LYD2_k127_5443324_2 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009568 424.0
LYD2_k127_5443324_3 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 357.0
LYD2_k127_5443324_4 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 347.0
LYD2_k127_5443324_5 ABC transporter, ATP-binding protein K02065 - - 0.000000000000000000000000000000000000000000000000000000000000008182 225.0
LYD2_k127_5443324_6 NmrA-like family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000007072 223.0
LYD2_k127_5443324_7 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.00000000000000000000000000000000000000000000000000000001084 214.0
LYD2_k127_5443324_8 Permease MlaE K02066 - - 0.00000000000000000000000000000000147 134.0
LYD2_k127_5443324_9 Transport and Golgi organisation 2 - - - 0.00000000000000000001674 107.0
LYD2_k127_548303_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 1.239e-253 796.0
LYD2_k127_548303_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 603.0
LYD2_k127_548303_10 thelarche K17081 - - 0.00000000000000000000000000000000000000000000000000000009967 213.0
LYD2_k127_548303_11 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.00000000000000000000001523 103.0
LYD2_k127_548303_12 glyoxalase III activity - - - 0.00000000000005456 85.0
LYD2_k127_548303_13 Ribbon-helix-helix domain protein - - - 0.000000000001523 69.0
LYD2_k127_548303_14 Protein of unknown function (DUF2905) - - - 0.00000000003209 68.0
LYD2_k127_548303_15 Rab subfamily of small GTPases K07881 GO:0000323,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0006996,GO:0007033,GO:0008150,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0030100,GO:0031090,GO:0031164,GO:0031338,GO:0031410,GO:0031982,GO:0032879,GO:0033043,GO:0033298,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048548,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051128,GO:0060627,GO:0065007,GO:0071840,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:1905364 - 0.0000004075 55.0
LYD2_k127_548303_16 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.0007176 49.0
LYD2_k127_548303_2 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006603 588.0
LYD2_k127_548303_3 Belongs to the peptidase S16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 516.0
LYD2_k127_548303_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 514.0
LYD2_k127_548303_5 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 472.0
LYD2_k127_548303_6 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 398.0
LYD2_k127_548303_7 palmitoyl-(protein) hydrolase activity K06999,K15975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 367.0
LYD2_k127_548303_8 PFAM SPFH domain Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 317.0
LYD2_k127_548303_9 Isochorismatase family K08281 - 3.5.1.19 0.0000000000000000000000000000000000000000000000000000000001643 214.0
LYD2_k127_5528415_0 PFAM Glucose Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009722 414.0
LYD2_k127_5590843_0 Bacterial virulence protein (VirJ) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009387 429.0
LYD2_k127_5590843_1 Uncharacterised conserved protein (DUF2156) K04567,K14205 - 2.3.2.3,6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 402.0
LYD2_k127_5590843_2 Lysylphosphatidylglycerol synthase TM region - - - 0.000000000000000000000000000000000000000000000004342 189.0
LYD2_k127_5609252_0 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 499.0
LYD2_k127_5609252_1 helicase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 494.0
LYD2_k127_5609252_2 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 438.0
LYD2_k127_5609252_3 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000001696 241.0
LYD2_k127_5609252_4 TM2 domain - - - 0.0000000004012 70.0
LYD2_k127_5609252_5 protein trimerization K15368 - - 0.00001702 55.0
LYD2_k127_5650800_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002046 541.0
LYD2_k127_5650800_1 ATPase associated with various cellular activities K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 427.0
LYD2_k127_5650800_2 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 314.0
LYD2_k127_5650800_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001375 294.0
LYD2_k127_5650800_4 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000001426 229.0
LYD2_k127_5650800_5 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.00000000000000000000004851 108.0
LYD2_k127_5650800_6 single-stranded nucleic acid binding R3H K06346 - - 0.000000000000001287 88.0
LYD2_k127_5650800_7 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000002092 49.0
LYD2_k127_5650800_8 Protein of unknown function DUF58 - - - 0.0009165 42.0
LYD2_k127_5683180_0 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005507 313.0
LYD2_k127_5683180_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 302.0
LYD2_k127_5683180_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000001156 184.0
LYD2_k127_5683180_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000116 170.0
LYD2_k127_5683180_4 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000006459 96.0
LYD2_k127_5710180_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 502.0
LYD2_k127_5710180_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 346.0
LYD2_k127_5710180_2 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000000000000000000000002179 176.0
LYD2_k127_5730201_0 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 552.0
LYD2_k127_5730201_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009055,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0022900,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 319.0
LYD2_k127_5730201_2 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003312 291.0
LYD2_k127_5730201_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009218 274.0
LYD2_k127_5730201_4 Belongs to the UPF0173 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001041 258.0
LYD2_k127_5730201_5 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000000000000000000000005596 153.0
LYD2_k127_5730201_6 Uncharacterized conserved protein (DUF2203) - - - 0.00000000000000002064 91.0
LYD2_k127_5736697_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 GO:0002682,GO:0002684,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006950,GO:0008150,GO:0009314,GO:0009380,GO:0009605,GO:0009607,GO:0009628,GO:0016020,GO:0032991,GO:0035821,GO:0042802,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0071944,GO:0075136,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 5.696e-215 682.0
LYD2_k127_5736697_1 H( )-stimulated, divalent metal cation uptake system K03322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 596.0
LYD2_k127_5736697_10 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000005721 209.0
LYD2_k127_5736697_11 Cell wall formation K00075 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008762,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0055114,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 1.3.1.98 0.0000000000000000000000000000000000000000000000000001865 198.0
LYD2_k127_5736697_12 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000004244 194.0
LYD2_k127_5736697_13 iron dependent repressor K03709 - - 0.0000000000000000000000000000000000000000001539 167.0
LYD2_k127_5736697_14 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.0000000000000000000000000000000000000004819 160.0
LYD2_k127_5736697_15 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.000000000000000000000000000000000001487 156.0
LYD2_k127_5736697_16 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.00000000000000000000000000000001919 139.0
LYD2_k127_5736697_17 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000001072 72.0
LYD2_k127_5736697_18 Protein similar to CwfJ C-terminus 1 K19710 - 2.7.7.53 0.00005941 48.0
LYD2_k127_5736697_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008111 483.0
LYD2_k127_5736697_3 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 401.0
LYD2_k127_5736697_4 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 288.0
LYD2_k127_5736697_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 301.0
LYD2_k127_5736697_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000006151 268.0
LYD2_k127_5736697_7 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000006453 250.0
LYD2_k127_5736697_8 Deoxynucleoside kinase K15518 - 2.7.1.113 0.000000000000000000000000000000000000000000000000000000000000000000004102 243.0
LYD2_k127_5736697_9 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030260,GO:0035635,GO:0040007,GO:0043167,GO:0043169,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000001656 219.0
LYD2_k127_5770045_0 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 416.0
LYD2_k127_5770045_1 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 345.0
LYD2_k127_5770045_2 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 334.0
LYD2_k127_5770045_3 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 315.0
LYD2_k127_5770045_4 Enoyl-CoA hydratase/isomerase K13766,K13779 - 4.2.1.18,4.2.1.57 0.00000000000000000000000000000000000000000000000000000000000000002525 249.0
LYD2_k127_5770045_5 Peptidase family M50 K06212,K06402 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000001303 224.0
LYD2_k127_5770045_6 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000000000000000001345 226.0
LYD2_k127_5770045_7 GAF domain - - - 0.0000000000000000000000000000000001029 151.0
LYD2_k127_5770045_8 amine dehydrogenase activity - - - 0.0000000000001813 84.0
LYD2_k127_5770045_9 Tetratricopeptide repeat - - - 0.00000000001167 74.0
LYD2_k127_5792420_0 TIGRFAM competence damage-inducible protein CinA K03742,K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005122 314.0
LYD2_k127_5792420_1 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 291.0
LYD2_k127_5792420_2 Phosphatidylglycerophosphatase A K01095 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030258,GO:0031224,GO:0031226,GO:0032026,GO:0042221,GO:0042577,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046839,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901576 3.1.3.27 0.0000000000000000000005592 101.0
LYD2_k127_5792420_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000002456 95.0
LYD2_k127_5792420_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.000000000000004631 89.0
LYD2_k127_581823_0 Peptidase M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 362.0
LYD2_k127_581823_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 306.0
LYD2_k127_581823_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000001423 198.0
LYD2_k127_581823_3 Belongs to the peptidase S11 family K01286,K07258,K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 3.4.16.4 0.0000000000000000000000000000000000000000000000002916 193.0
LYD2_k127_581823_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000006372 158.0
LYD2_k127_581823_5 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000005358 98.0
LYD2_k127_581823_6 Polymorphic membrane protein Chlamydia - - - 0.000000000000003739 90.0
LYD2_k127_581823_7 Peptidase, M23 family - - - 0.000000008549 69.0
LYD2_k127_5917244_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 4.531e-262 817.0
LYD2_k127_5917244_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 619.0
LYD2_k127_5917244_2 helicase involved in DNA repair and perhaps also replication K02342,K03722 - 2.7.7.7,3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009799 313.0
LYD2_k127_5917244_3 Cyclic nucleotide-monophosphate binding domain - - - 0.0005722 53.0
LYD2_k127_5935795_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0 1092.0
LYD2_k127_5935795_1 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 314.0
LYD2_k127_5935795_2 PFAM OmpA MotB domain protein K03640 - - 0.0000000000000000000000000000000002579 138.0
LYD2_k127_5935795_3 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000002978 132.0
LYD2_k127_5935795_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000002361 121.0
LYD2_k127_5935795_5 TonB C terminal K03646,K03832 - - 0.000000000000000004718 90.0
LYD2_k127_5935795_6 Cys/Met metabolism PLP-dependent enzyme K01760,K01761 - 4.4.1.11,4.4.1.8 0.00000002394 56.0
LYD2_k127_5935795_7 Amidohydrolase family - - - 0.0000006171 62.0
LYD2_k127_5944660_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 400.0
LYD2_k127_5944660_1 Fe-S oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 377.0
LYD2_k127_5944660_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009074 359.0
LYD2_k127_5944660_3 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001917 307.0
LYD2_k127_5944660_4 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000002604 243.0
LYD2_k127_5944660_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000009512 144.0
LYD2_k127_5944660_6 PFAM regulatory protein, MerR - - - 0.00000000000000000005277 97.0
LYD2_k127_59717_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 614.0
LYD2_k127_59717_1 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 297.0
LYD2_k127_59717_2 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000008967 214.0
LYD2_k127_59717_3 Permease YjgP YjgQ K11720 - - 0.000000000000000000000000000000000000000000000000000000000006283 229.0
LYD2_k127_59717_4 Belongs to the ComB family K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.000000000000000000000000000000000000000000000000004092 191.0
LYD2_k127_5982179_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 437.0
LYD2_k127_5982179_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009889,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2001141 - 0.0000000000000000000000005112 106.0
LYD2_k127_6008794_0 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006378 318.0
LYD2_k127_6008794_1 Bacterial membrane protein, YfhO - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007306 338.0
LYD2_k127_6008794_2 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000000000000000000008005 197.0
LYD2_k127_6008794_3 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000003319 161.0
LYD2_k127_6008794_4 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000006334 151.0
LYD2_k127_6008794_5 PFAM Glycosyl transferase family 2 K07011,K16870 - 2.4.1.289 0.0000000000000003049 85.0
LYD2_k127_6017453_0 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 349.0
LYD2_k127_6017453_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 348.0
LYD2_k127_6017453_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 305.0
LYD2_k127_6017453_3 LacY proton/sugar symporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000122 247.0
LYD2_k127_6017453_4 Serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000001088 229.0
LYD2_k127_6017453_5 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.000000000000000000000000000000000000000000000000000000194 212.0
LYD2_k127_6017453_6 OsmC-like protein - - - 0.00000000000000000000000000000000000000000002092 184.0
LYD2_k127_6017453_7 Protein of unknown function (DUF1634) - - - 0.00000005981 64.0
LYD2_k127_6040015_0 phosphoglucosamine mutase activity K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 456.0
LYD2_k127_6040015_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 415.0
LYD2_k127_6040015_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 402.0
LYD2_k127_6040015_3 FlgD Ig-like domain K15924 - 3.2.1.136 0.000000000000000000000000000000000000000000000000000000000000000199 250.0
LYD2_k127_6040015_4 amino acid activation for nonribosomal peptide biosynthetic process K17713 - - 0.0000000000000000000000000000069 135.0
LYD2_k127_6040015_5 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.000000000000000000000000002698 118.0
LYD2_k127_6041261_0 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 427.0
LYD2_k127_6041261_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000049,GO:0000154,GO:0001510,GO:0002935,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016426,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0070040,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:0140102,GO:1901360,GO:1901363 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 302.0
LYD2_k127_6041261_2 Histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000005282 207.0
LYD2_k127_6041261_3 surface antigen K07277,K07278 - - 0.000000000000000000002617 107.0
LYD2_k127_6041261_4 Domain of unknown function (DUF4390) - - - 0.0000002546 62.0
LYD2_k127_6041567_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 339.0
LYD2_k127_6041567_1 inorganic phosphate transmembrane transporter activity K02037,K02038 GO:0008150,GO:0040007,GO:0044110,GO:0044116,GO:0044117,GO:0044403,GO:0044419,GO:0051704 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 304.0
LYD2_k127_6041567_2 response regulator K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000714 229.0
LYD2_k127_6041567_3 PFAM ATP-binding region, ATPase domain protein K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000003184 231.0
LYD2_k127_6041567_4 negative regulation of phosphate transmembrane transport K02039 GO:0000287,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006873,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010629,GO:0010966,GO:0016020,GO:0016036,GO:0019220,GO:0019222,GO:0019725,GO:0019897,GO:0019898,GO:0022898,GO:0030002,GO:0030145,GO:0030320,GO:0030643,GO:0031323,GO:0031324,GO:0031667,GO:0031668,GO:0031669,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032879,GO:0033554,GO:0034605,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0040008,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043269,GO:0043271,GO:0044070,GO:0044092,GO:0044419,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045936,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051174,GO:0051704,GO:0051716,GO:0055062,GO:0055081,GO:0055082,GO:0055083,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071467,GO:0071496,GO:0071944,GO:0072501,GO:0072502,GO:0072505,GO:0072506,GO:0098771,GO:0104004,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000002388 204.0
LYD2_k127_6053534_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 614.0
LYD2_k127_6053534_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384,K03671,K22345 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9,4.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 391.0
LYD2_k127_6053534_10 Tetratricopeptide repeat - - - 0.00008762 55.0
LYD2_k127_6053534_2 FAD binding domain K00103,K00279 - 1.1.3.8,1.5.99.12 0.00000000000000000000000000000000000000000000000000000000002134 217.0
LYD2_k127_6053534_3 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000005475 213.0
LYD2_k127_6053534_4 YceI-like domain - - - 0.0000000000000000000000000000000000000000000001001 177.0
LYD2_k127_6053534_5 alpha/beta hydrolase fold - - - 0.00000000000000000000000000001039 136.0
LYD2_k127_6053534_6 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000002975 135.0
LYD2_k127_6053534_7 ATP hydrolysis coupled proton transport - - - 0.000000000000000000000000004994 127.0
LYD2_k127_6053534_8 PFAM NUDIX hydrolase K03574 - 3.6.1.55 0.00000000000000000000000003978 113.0
LYD2_k127_6053534_9 sterol carrier protein - - - 0.0000000003037 66.0
LYD2_k127_6055667_0 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004301 291.0
LYD2_k127_6055667_1 Histidine kinase-, DNA gyrase B-, and HSP90-like - - - 0.00000000000000000000000000000000000000000000000000000002215 218.0
LYD2_k127_6055667_2 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000002833 163.0
LYD2_k127_6055667_3 THIamine pyrophosphokinase K00949 - 2.7.6.2 0.0000000000000000000000000002084 124.0
LYD2_k127_6056120_0 PFAM sigma-54 factor interaction domain-containing protein K02481,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 406.0
LYD2_k127_6056120_1 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 355.0
LYD2_k127_6056120_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001684 263.0
LYD2_k127_6056120_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000007555 246.0
LYD2_k127_6056120_4 GAF domain K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000003205 201.0
LYD2_k127_6056120_5 mannose-1-phosphate guanylyltransferase activity K00971,K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000000000000000001454 188.0
LYD2_k127_6056120_7 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000000125 113.0
LYD2_k127_6056120_8 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000005809 101.0
LYD2_k127_6080506_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 383.0
LYD2_k127_6080506_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000002342 237.0
LYD2_k127_6080506_2 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000001164 214.0
LYD2_k127_6080506_3 metallophosphoesterase K07096 - - 0.00000000279 61.0
LYD2_k127_6100917_0 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.00000000000000000000000000000000000000000000000000000000002196 209.0
LYD2_k127_6100917_1 PFAM glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000007744 211.0
LYD2_k127_6100917_2 Methyltransferase domain - - - 0.000000000000000000000004545 109.0
LYD2_k127_6100917_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000002325 96.0
LYD2_k127_6100917_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000001201 61.0
LYD2_k127_6127375_0 Alpha amylase, catalytic domain - - - 0.0 1234.0
LYD2_k127_6127375_1 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.0000000000000000000000000000000000000001195 164.0
LYD2_k127_6127375_2 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.000000000003237 78.0
LYD2_k127_6140775_0 Thrombospondin type 3 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000003385 245.0
LYD2_k127_6140775_1 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000002666 196.0
LYD2_k127_6140775_2 O-methyltransferase, family 2 - - - 0.00000000000000000000000000000000001539 153.0
LYD2_k127_6140775_3 GatB YqeY K09117 - - 0.00000000000000000002238 97.0
LYD2_k127_6168120_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.358e-254 795.0
LYD2_k127_6168120_1 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 473.0
LYD2_k127_6168120_10 Laminin G domain - - - 0.000003247 57.0
LYD2_k127_6168120_11 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.0001788 53.0
LYD2_k127_6168120_2 fatty acid transporter K02106 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009287 464.0
LYD2_k127_6168120_3 PFAM histone deacetylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005205 289.0
LYD2_k127_6168120_4 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003629 286.0
LYD2_k127_6168120_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000685 130.0
LYD2_k127_6168120_6 Rhs Family K20276 - - 0.0000000000000000000000002404 124.0
LYD2_k127_6168120_7 - - - - 0.00000000000000000000002239 113.0
LYD2_k127_6168120_8 YceI-like domain - - - 0.000000000000000003763 95.0
LYD2_k127_6168120_9 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000000006197 99.0
LYD2_k127_61734_0 Insulinase (Peptidase family M16) K07263 - - 3.266e-296 937.0
LYD2_k127_61734_1 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 497.0
LYD2_k127_61734_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004295 379.0
LYD2_k127_61734_3 ATP-grasp domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 378.0
LYD2_k127_61734_4 Rubrerythrin K22336 - 1.16.3.1 0.000000000000000000000000000000000000000000483 164.0
LYD2_k127_61734_5 Methyltransferase domain - - - 0.0000000001675 64.0
LYD2_k127_61734_6 domain, Protein - - - 0.00000006091 59.0
LYD2_k127_61734_8 HD domain - - - 0.0001997 51.0
LYD2_k127_6219729_0 PFAM type II secretion system protein E K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 507.0
LYD2_k127_6219729_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 383.0
LYD2_k127_6219729_2 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 384.0
LYD2_k127_6235567_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 478.0
LYD2_k127_6235567_1 ABC transporter, transmembrane K18889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 461.0
LYD2_k127_6235567_2 ABC transporter K06147,K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 465.0
LYD2_k127_6235567_3 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 365.0
LYD2_k127_6235567_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000001375 108.0
LYD2_k127_6235567_5 C4-type zinc ribbon domain K07164 - - 0.00000000000000000001725 102.0
LYD2_k127_6271072_0 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001578 295.0
LYD2_k127_6271072_1 pilus assembly protein K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001794 276.0
LYD2_k127_6271072_2 Protein of unknown function (DUF2723) - - - 0.00000000000000000000000000002473 134.0
LYD2_k127_6271072_3 Fimbrial assembly protein (PilN) K02663 - - 0.00000000000002238 84.0
LYD2_k127_6271072_4 Pilus assembly protein, PilO K02664 - - 0.000000000587 65.0
LYD2_k127_6271072_5 Pilus assembly protein PilX - - - 0.0000002492 63.0
LYD2_k127_6314613_0 Cys/Met metabolism PLP-dependent enzyme K01760,K17217 - 4.4.1.1,4.4.1.2,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008321 499.0
LYD2_k127_6314613_1 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 469.0
LYD2_k127_6314613_10 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000003715 214.0
LYD2_k127_6314613_11 Secretin and TonB N terminus short domain K02453,K02666 - - 0.0000000000000000000000000000000000000000000000000005231 209.0
LYD2_k127_6314613_12 TonB-dependent Receptor Plug Domain K16092 - - 0.00000000000000000000000000000000000000000000004407 192.0
LYD2_k127_6314613_13 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.0000000000000000000000000000000000007707 150.0
LYD2_k127_6314613_14 PFAM response regulator receiver K07657 - - 0.0000000000000000000000000000007243 126.0
LYD2_k127_6314613_15 nucleotidyltransferase activity - - - 0.000000000003918 77.0
LYD2_k127_6314613_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 458.0
LYD2_k127_6314613_3 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 454.0
LYD2_k127_6314613_4 Belongs to the thiolase family K00626,K07508 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006077 433.0
LYD2_k127_6314613_5 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 398.0
LYD2_k127_6314613_6 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 397.0
LYD2_k127_6314613_7 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 375.0
LYD2_k127_6314613_8 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 294.0
LYD2_k127_6314613_9 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000036 219.0
LYD2_k127_632270_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.083e-277 875.0
LYD2_k127_632270_1 Methylenetetrahydrofolate reductase K00297,K00547,K00548 - 1.5.1.20,2.1.1.10,2.1.1.13 1.377e-202 651.0
LYD2_k127_632270_10 haloacid dehalogenase-like hydrolase K02203 - 2.7.1.39,3.1.3.3 0.0000000000000000000000000000000000000000724 159.0
LYD2_k127_632270_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 574.0
LYD2_k127_632270_3 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005999 534.0
LYD2_k127_632270_4 Aminotransferase class-V - GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006807,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019752,GO:0042133,GO:0042136,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 319.0
LYD2_k127_632270_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 296.0
LYD2_k127_632270_6 PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00015,K00058,K16843 - 1.1.1.26,1.1.1.310,1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008381 279.0
LYD2_k127_632270_7 Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000007625 242.0
LYD2_k127_632270_8 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000009253 211.0
LYD2_k127_632270_9 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.00000000000000000000000000000000000000004121 165.0
LYD2_k127_67992_0 Penicillin-binding Protein dimerisation domain K03587,K08384,K08724,K12552,K12556 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 351.0
LYD2_k127_67992_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000004926 218.0
LYD2_k127_67992_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000003332 160.0
LYD2_k127_67992_3 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.0000000000000000000000000000000000005386 145.0
LYD2_k127_720391_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 371.0
LYD2_k127_720391_1 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000001226 261.0
LYD2_k127_720391_2 Glycoside hydrolase family 3 K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000002127 248.0
LYD2_k127_720391_3 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.0000000000000000000000000000000000000000000000000001836 194.0
LYD2_k127_720391_4 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000001697 149.0
LYD2_k127_720391_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000001875 118.0
LYD2_k127_720391_6 Belongs to the peptidase S8 family - - - 0.0002548 53.0
LYD2_k127_720391_7 Psort location CytoplasmicMembrane, score K01533,K17686 - 3.6.3.4,3.6.3.54 0.000425 53.0
LYD2_k127_848976_0 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 5.57e-294 922.0
LYD2_k127_848976_1 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 423.0
LYD2_k127_848976_2 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 324.0
LYD2_k127_848976_3 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000001228 197.0
LYD2_k127_848976_4 Hydrolase - - - 0.0000000000000000000000000000002231 125.0
LYD2_k127_848976_5 ribosomal large subunit export from nucleus - - - 0.0000000000000003835 91.0
LYD2_k127_848976_6 'Cold-shock' DNA-binding domain - - - 0.000000000000001611 89.0
LYD2_k127_868535_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006131 312.0
LYD2_k127_868535_1 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.00000000000000000000000000000000000000000000227 170.0
LYD2_k127_868535_2 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000001696 152.0
LYD2_k127_868535_3 Receptor family ligand binding region K01999 - - 0.00000000008475 74.0
LYD2_k127_868535_4 Peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000004355 70.0
LYD2_k127_951781_0 Prokaryotic cytochrome b561 - - - 5.266e-256 806.0
LYD2_k127_951781_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 1.35e-225 715.0
LYD2_k127_951781_10 PFAM Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000001919 221.0
LYD2_k127_951781_11 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000003764 217.0
LYD2_k127_951781_12 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000005317 80.0
LYD2_k127_951781_2 5TM C-terminal transporter carbon starvation CstA K06200 - - 5.601e-207 660.0
LYD2_k127_951781_3 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004137 431.0
LYD2_k127_951781_4 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 358.0
LYD2_k127_951781_5 HAD superfamily (subfamily IG) hydrolase 5'-Nucleotidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 357.0
LYD2_k127_951781_6 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 317.0
LYD2_k127_951781_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001458 271.0
LYD2_k127_951781_8 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004784,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009266,GO:0009268,GO:0009405,GO:0009408,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0010269,GO:0010447,GO:0016020,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0020012,GO:0030145,GO:0030682,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042597,GO:0043167,GO:0043169,GO:0043207,GO:0044237,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052059,GO:0052173,GO:0052200,GO:0052385,GO:0052550,GO:0052564,GO:0052567,GO:0052572,GO:0055114,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071291,GO:0071450,GO:0071451,GO:0071944,GO:0072593,GO:0075136,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000004557 246.0
LYD2_k127_951781_9 Sugar nucleotidyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001996 251.0
LYD2_k127_98677_0 Transglycosylase K05366 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.4.1.129,3.4.16.4 6.419e-201 647.0
LYD2_k127_98677_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 414.0
LYD2_k127_98677_2 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 379.0
LYD2_k127_98677_3 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.00000000000000000000000000000000008629 138.0