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Overview

ID MAG02042
Name LYD2_bin.17
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Casimicrobiaceae
Genus CAIWHR01
Species
Assembly information
Completeness (%) 63.48
Contamination (%) 1.58
GC content (%) 68.0
N50 (bp) 6,380
Genome size (bp) 2,552,614

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2635

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1035565_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 1.704e-210 683.0
LYD2_k127_1035565_1 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001971 251.0
LYD2_k127_1052647_0 Alpha-2-Macroglobulin K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 377.0
LYD2_k127_1074945_0 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.4 4.832e-221 700.0
LYD2_k127_1074945_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006981 336.0
LYD2_k127_1074945_2 enoyl-CoA hydratase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 304.0
LYD2_k127_1074945_3 Domain of unknown function (DUF4126) - - - 0.000000000000000000000000000000000000000000000000000000000000003686 227.0
LYD2_k127_10949_0 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 1.347e-229 720.0
LYD2_k127_10949_1 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 1.742e-226 715.0
LYD2_k127_10949_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 309.0
LYD2_k127_10949_11 transcriptional regulator K13641 GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000002987 247.0
LYD2_k127_10949_12 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000005628 163.0
LYD2_k127_10949_13 Protein of unknown function (DUF2783) - - - 0.000000000000000003052 91.0
LYD2_k127_10949_14 response to heat K03668,K09914 - - 0.00000000000209 78.0
LYD2_k127_10949_2 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 535.0
LYD2_k127_10949_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 526.0
LYD2_k127_10949_4 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 514.0
LYD2_k127_10949_5 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009354 488.0
LYD2_k127_10949_6 Peptidase family M28 K02083 - 3.5.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 488.0
LYD2_k127_10949_7 2 iron, 2 sulfur cluster binding K00266,K00528,K02823 - 1.18.1.2,1.19.1.1,1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 466.0
LYD2_k127_10949_8 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 417.0
LYD2_k127_10949_9 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 340.0
LYD2_k127_1123647_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 1.144e-262 825.0
LYD2_k127_1123647_1 Rod shape-determining protein MreB K03569 - - 2.474e-195 614.0
LYD2_k127_1123647_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 471.0
LYD2_k127_1123647_3 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003229 275.0
LYD2_k127_1123647_4 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000383 187.0
LYD2_k127_1123647_5 shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000004449 149.0
LYD2_k127_1123647_6 - - - - 0.0000000005667 62.0
LYD2_k127_1123647_7 - - - - 0.000002066 54.0
LYD2_k127_116287_0 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 3.008e-254 799.0
LYD2_k127_116287_1 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 5.923e-208 654.0
LYD2_k127_116287_2 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008634 403.0
LYD2_k127_116287_3 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000000000000004723 237.0
LYD2_k127_116287_4 PFAM UspA domain protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000003575 227.0
LYD2_k127_116287_5 - - - - 0.0000000000000000000000000000000009809 134.0
LYD2_k127_116287_6 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000006377 113.0
LYD2_k127_116287_7 - - - - 0.000000000000001139 81.0
LYD2_k127_1197954_0 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 372.0
LYD2_k127_1197954_1 PFAM ABC transporter related K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 325.0
LYD2_k127_1197954_2 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000007578 249.0
LYD2_k127_1197954_3 ABC-type amino acid transport signal transduction systems periplasmic component domain K10001 GO:0003333,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0015711,GO:0015740,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016595,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0042597,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0046942,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070335,GO:0070778,GO:0071702,GO:0071705,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000001848 225.0
LYD2_k127_1197954_4 Mammalian cell entry related domain protein K02067,K06192 - - 0.000000000000000000000000000000000000000000000000000000009884 204.0
LYD2_k127_1197954_5 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000002841 190.0
LYD2_k127_1197954_6 - - - - 0.000000000000000000002735 102.0
LYD2_k127_1197954_7 Outer membrane lipoprotein K06077 - - 0.00000000000000001273 83.0
LYD2_k127_1197954_8 Glycine zipper 2TM domain - - - 0.00000002552 64.0
LYD2_k127_1238731_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 3.204e-242 754.0
LYD2_k127_1238731_1 cytochrome C oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 387.0
LYD2_k127_1238731_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 303.0
LYD2_k127_1238731_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002956 298.0
LYD2_k127_1238731_4 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.00000000000000000000000000000000000000001226 164.0
LYD2_k127_1238731_5 FixH K09926 - - 0.00000000000000000000000000000000000002675 153.0
LYD2_k127_1238731_6 - - - - 0.0000000000000000000000000007615 117.0
LYD2_k127_1238731_7 - - - - 0.000003255 59.0
LYD2_k127_126427_0 Psort location Cytoplasmic, score 8.96 K07462 - - 3.265e-202 647.0
LYD2_k127_126427_1 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 357.0
LYD2_k127_126427_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000000002748 151.0
LYD2_k127_1271209_0 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000002659 267.0
LYD2_k127_1271209_1 enzyme of heme biosynthesis K02498 - - 0.0000000000000000000000003245 112.0
LYD2_k127_1280642_0 CoA-transferase family III K18289 - 2.8.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 606.0
LYD2_k127_1280642_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 427.0
LYD2_k127_1280642_2 MmgE/PrpD family - - - 0.0000000001311 62.0
LYD2_k127_1282096_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 344.0
LYD2_k127_1282096_1 Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers K07518 - 3.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000003212 261.0
LYD2_k127_1288908_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 310.0
LYD2_k127_1288908_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000005701 93.0
LYD2_k127_1288908_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00001507 49.0
LYD2_k127_1290493_0 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 1.141e-305 955.0
LYD2_k127_1290493_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 534.0
LYD2_k127_1290493_10 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 300.0
LYD2_k127_1290493_11 lipopolysaccharide heptosyltransferase I K02841 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003954 270.0
LYD2_k127_1290493_12 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000001416 260.0
LYD2_k127_1290493_13 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000001122 245.0
LYD2_k127_1290493_14 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000002368 227.0
LYD2_k127_1290493_15 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000009449 199.0
LYD2_k127_1290493_16 PFAM Fimbrial assembly family protein K02663 - - 0.0000000000000000000000000000000000000000000000000002446 203.0
LYD2_k127_1290493_17 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000415 201.0
LYD2_k127_1290493_18 mRNA catabolic process - - - 0.00000000000000000000002393 108.0
LYD2_k127_1290493_2 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005322 492.0
LYD2_k127_1290493_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 490.0
LYD2_k127_1290493_4 Type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 483.0
LYD2_k127_1290493_5 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 458.0
LYD2_k127_1290493_6 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000664 422.0
LYD2_k127_1290493_7 RmlD substrate binding domain K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 420.0
LYD2_k127_1290493_8 type I secretion outer membrane protein, TolC K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005872 357.0
LYD2_k127_1290493_9 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824 315.0
LYD2_k127_1294179_0 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005375 295.0
LYD2_k127_1294179_1 Domain of unknown function (DUF2437) - - - 0.0003094 52.0
LYD2_k127_1303011_0 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482 582.0
LYD2_k127_1303011_1 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006032 416.0
LYD2_k127_1303011_10 - - - - 0.000004811 54.0
LYD2_k127_1303011_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004993 377.0
LYD2_k127_1303011_3 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 335.0
LYD2_k127_1303011_4 Protein of unknown function, DUF480 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 288.0
LYD2_k127_1303011_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004387 270.0
LYD2_k127_1303011_6 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.000000000000000000000000000000000000000000000000000000000000002558 218.0
LYD2_k127_1303011_7 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000003518 195.0
LYD2_k127_1303011_8 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000002819 115.0
LYD2_k127_1303011_9 - - - - 0.000000000004248 75.0
LYD2_k127_1306706_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 1.571e-224 700.0
LYD2_k127_1306706_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.656e-200 630.0
LYD2_k127_1306706_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 451.0
LYD2_k127_1306706_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 447.0
LYD2_k127_1306706_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 342.0
LYD2_k127_1306706_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 327.0
LYD2_k127_1306706_6 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000005594 221.0
LYD2_k127_1306706_7 colicin v production K03558 - - 0.00000000000000000000000000002463 126.0
LYD2_k127_1306706_8 pilus assembly protein FimV K08086 - - 0.000000000000002219 83.0
LYD2_k127_1306706_9 Sporulation related domain K03749 - - 0.0000000003102 71.0
LYD2_k127_1320157_0 Isocitrate lyase K01637 - 4.1.3.1 6.564e-237 739.0
LYD2_k127_1320157_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 8.542e-194 635.0
LYD2_k127_1320157_10 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000001395 113.0
LYD2_k127_1320157_11 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000000001031 91.0
LYD2_k127_1320157_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 625.0
LYD2_k127_1320157_3 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004173 579.0
LYD2_k127_1320157_4 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 535.0
LYD2_k127_1320157_5 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 378.0
LYD2_k127_1320157_6 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006826 347.0
LYD2_k127_1320157_7 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008409 319.0
LYD2_k127_1320157_8 Sulfide dehydrogenase K05301,K17218 - 1.8.2.1,1.8.5.4 0.00000000000000000000000000000000000000005486 156.0
LYD2_k127_1320157_9 Cytochrome c, class I - - - 0.0000000000000000000000000000005294 125.0
LYD2_k127_1332487_0 COG0436 Aspartate tyrosine aromatic aminotransferase K14287 - 2.6.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 471.0
LYD2_k127_1332487_1 ABC transporter C-terminal domain K15738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 395.0
LYD2_k127_1332487_2 dienelactone hydrolase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000003618 264.0
LYD2_k127_1332487_3 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000003346 255.0
LYD2_k127_1344582_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002259 274.0
LYD2_k127_1344582_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000000000000001513 247.0
LYD2_k127_1344582_2 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000001879 167.0
LYD2_k127_1344582_3 Transcriptional regulator - - - 0.0000000002747 61.0
LYD2_k127_1345805_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 323.0
LYD2_k127_1345805_1 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000001094 190.0
LYD2_k127_1345805_2 Tfp pilus assembly protein FimV - - - 0.0000000000000000000000000000000637 144.0
LYD2_k127_1346876_0 Domain of unknown function (DUF3394) - - - 1.491e-257 813.0
LYD2_k127_1346876_1 TRAP transporter solute receptor TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 434.0
LYD2_k127_1346876_2 Peptidase M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 415.0
LYD2_k127_1346876_3 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006931 296.0
LYD2_k127_1346876_4 Nudix N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001404 253.0
LYD2_k127_1346876_5 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000001094 68.0
LYD2_k127_1348605_0 N-terminal domain of oxidoreductase K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006706 524.0
LYD2_k127_1348605_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000006043 245.0
LYD2_k127_1349291_0 DNA helicase K03654 - 3.6.4.12 3.05e-250 782.0
LYD2_k127_1349291_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007376 472.0
LYD2_k127_1349291_2 Protein of unknown function (DUF1326) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 323.0
LYD2_k127_1349291_3 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005344 317.0
LYD2_k127_1349291_4 PFAM Ion transport 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008034 282.0
LYD2_k127_1349291_5 rhamnose metabolic process - - - 0.00000000000000000000000000000000006379 136.0
LYD2_k127_1349291_6 Iron-containing redox enzyme K06137 - 1.3.3.11 0.0000001858 57.0
LYD2_k127_1357411_0 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 495.0
LYD2_k127_1357411_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000000000000000000000000000000000000000004032 186.0
LYD2_k127_1357411_2 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000001247 190.0
LYD2_k127_1357411_3 PFAM Phosphoribosyltransferase - - - 0.00000000000000000000000000000000000000000001755 173.0
LYD2_k127_1357411_4 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000406 137.0
LYD2_k127_1358751_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 386.0
LYD2_k127_1358751_1 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001506 271.0
LYD2_k127_1358751_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000004207 265.0
LYD2_k127_1358751_3 CBS domain - - - 0.000000000000000000007119 98.0
LYD2_k127_1358751_4 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.0000000000000000001051 88.0
LYD2_k127_1365251_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 1.149e-246 771.0
LYD2_k127_1365251_1 Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 567.0
LYD2_k127_1365251_2 Domain of unknown function (DUF4863) - - - 0.00000000000000000000000000000000000000000000000000000000000891 211.0
LYD2_k127_1365251_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000007793 97.0
LYD2_k127_1370802_0 AMP-binding enzyme C-terminal domain K00666 - - 1.204e-263 823.0
LYD2_k127_1370802_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006389 554.0
LYD2_k127_1370802_2 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 468.0
LYD2_k127_1370802_3 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 308.0
LYD2_k127_1370802_4 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000007177 245.0
LYD2_k127_1370802_5 Protein of unknown function, DUF485 - - - 0.0000000000000000000000000000000000000001429 154.0
LYD2_k127_1370802_6 tRNA synthetases class I (C) catalytic domain K01883 - 6.1.1.16 0.000000000000000000000000000001802 123.0
LYD2_k127_1381199_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 3.427e-204 647.0
LYD2_k127_1381199_1 PFAM AMP-dependent synthetase and ligase - - - 3.88e-199 635.0
LYD2_k127_1381199_2 Amidohydrolase family K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 568.0
LYD2_k127_1381199_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 430.0
LYD2_k127_1381199_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 404.0
LYD2_k127_1381199_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 307.0
LYD2_k127_1381199_6 synthesis repressor, PhaR - - - 0.00000000000000000000000000000000000000000000000000000000000000001671 231.0
LYD2_k127_1381199_7 Phasin protein - - - 0.000000000000000000000005581 109.0
LYD2_k127_1384725_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 290.0
LYD2_k127_1384725_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 295.0
LYD2_k127_1384725_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001351 242.0
LYD2_k127_1384725_3 CRS1_YhbY K07574 - - 0.00000000000000000000000000002563 123.0
LYD2_k127_1384725_4 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000004454 109.0
LYD2_k127_1390961_0 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 343.0
LYD2_k127_1390961_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000002846 191.0
LYD2_k127_1390961_2 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009279,GO:0010876,GO:0016020,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0033218,GO:0034613,GO:0042157,GO:0042277,GO:0043170,GO:0044238,GO:0044462,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0051668,GO:0070727,GO:0071704,GO:0071723,GO:0071944,GO:0072657,GO:1901564 - 0.0000000000000002119 89.0
LYD2_k127_1394041_0 DNA polymerase III tau subunit V interacting with alpha K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 522.0
LYD2_k127_1394041_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 298.0
LYD2_k127_1394041_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007657 276.0
LYD2_k127_1394041_3 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002414 288.0
LYD2_k127_1394041_4 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000000000000000000177 179.0
LYD2_k127_1394288_0 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 428.0
LYD2_k127_139840_0 Histidine kinase K20975 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008363 317.0
LYD2_k127_139840_1 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000001873 179.0
LYD2_k127_1401236_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 483.0
LYD2_k127_1401236_1 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 323.0
LYD2_k127_1401236_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000001738 218.0
LYD2_k127_1403208_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 1.999e-285 898.0
LYD2_k127_1403208_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009301 626.0
LYD2_k127_1403208_2 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 383.0
LYD2_k127_1403208_3 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 358.0
LYD2_k127_1403208_4 phosphoserine phosphatase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000005734 274.0
LYD2_k127_1403208_5 Phosphoribosyl transferase domain K07101 - - 0.000000000000000000000000000000000000000000000000000000000001445 215.0
LYD2_k127_1403208_6 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000001116 134.0
LYD2_k127_1403208_7 Iron-sulphur cluster assembly - - - 0.000000000000000000000000004501 111.0
LYD2_k127_1403208_8 protein conserved in bacteria K09937 - - 0.00000000000001024 78.0
LYD2_k127_1403208_9 Ferredoxin K04755 - - 0.0000000000007961 68.0
LYD2_k127_1409855_0 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 4.024e-202 646.0
LYD2_k127_1409855_1 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 332.0
LYD2_k127_1409855_2 pfkB family carbohydrate kinase K00856 - 2.7.1.20 0.000000000000000000000000000000000000000000000002769 176.0
LYD2_k127_1423742_0 COG0631 Serine threonine protein phosphatase K01090,K11915,K20074 - 3.1.3.16 0.00002698 52.0
LYD2_k127_1423742_1 mitotic cytokinesis K16308 GO:0000003,GO:0000070,GO:0000086,GO:0000278,GO:0000280,GO:0000281,GO:0000819,GO:0000910,GO:0000912,GO:0000915,GO:0001726,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005795,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007059,GO:0007088,GO:0007091,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0008064,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0010256,GO:0010564,GO:0010721,GO:0010769,GO:0010771,GO:0010965,GO:0010975,GO:0010977,GO:0012501,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016358,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017048,GO:0019538,GO:0019899,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030036,GO:0030154,GO:0030165,GO:0030182,GO:0030496,GO:0030832,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031175,GO:0031252,GO:0031267,GO:0031344,GO:0031345,GO:0031984,GO:0031985,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032954,GO:0032956,GO:0032970,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0036211,GO:0036477,GO:0042995,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0044837,GO:0044839,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0048232,GO:0048285,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0051020,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051276,GO:0051301,GO:0051302,GO:0051321,GO:0051402,GO:0051493,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051960,GO:0051961,GO:0051983,GO:0060284,GO:0061640,GO:0065007,GO:0065008,GO:0070938,GO:0070997,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090068,GO:0097110,GO:0097458,GO:0098590,GO:0098791,GO:0098813,GO:0099568,GO:0110020,GO:0110053,GO:0120025,GO:0120035,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1901564,GO:1902903,GO:1903046,GO:1903047,GO:1905818,GO:2000026,GO:2000171,GO:2000431 2.7.11.1 0.0004692 53.0
LYD2_k127_1423898_0 acyl-CoA dehydrogenase K20035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 541.0
LYD2_k127_1423898_1 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 308.0
LYD2_k127_1423898_2 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.0000000000000000000000000000000001669 134.0
LYD2_k127_1423898_3 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008813,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 4.1.3.40 0.00000000000003508 81.0
LYD2_k127_143307_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 2.536e-237 744.0
LYD2_k127_143307_1 Na Pi-cotransporter II-related protein K03324 - - 9.851e-197 630.0
LYD2_k127_143307_2 phosphonoacetate hydrolase K19670 - 3.11.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 582.0
LYD2_k127_143307_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K00836 - 2.6.1.19,2.6.1.76 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 536.0
LYD2_k127_143307_4 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001424 260.0
LYD2_k127_143307_5 of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000007966 230.0
LYD2_k127_143307_6 FAD dependent oxidoreductase - - - 0.00000000000000000000000000001205 119.0
LYD2_k127_1439762_0 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 438.0
LYD2_k127_1439762_1 HI0933-like protein - - - 0.000000000000000000000000000000000000001472 162.0
LYD2_k127_1439762_2 ABC-2 type transporter K09694 - - 0.00000000000000000000000000000006825 126.0
LYD2_k127_1440543_0 FAD dependent oxidoreductase - - - 3.895e-275 860.0
LYD2_k127_1447606_0 cobalamin biosynthetic process K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 325.0
LYD2_k127_1447606_1 PFAM beta-lactamase domain protein - - - 0.00000000000000000000002922 100.0
LYD2_k127_1447606_2 - - - - 0.000003363 50.0
LYD2_k127_1447825_0 Belongs to the ABC transporter superfamily K13892 - - 6.55e-214 672.0
LYD2_k127_1447825_1 PFAM extracellular solute-binding protein, family 5 K02035,K13889 - - 0.000000000000001461 82.0
LYD2_k127_1449168_0 CoA-binding domain protein K09181 - - 0.000000000000000000000000000000000000000000000000000001219 197.0
LYD2_k127_1449168_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000001086 177.0
LYD2_k127_1449168_2 Universal stress protein family - - - 0.0000000000000000000000000000938 121.0
LYD2_k127_1459391_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1123.0
LYD2_k127_1459391_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005469 332.0
LYD2_k127_1469123_0 lipoprotein releasing system, transmembrane protein, LolC E family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 469.0
LYD2_k127_1469123_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 380.0
LYD2_k127_1469123_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000002115 112.0
LYD2_k127_1469123_3 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000001282 97.0
LYD2_k127_147547_0 COG1960 Acyl-CoA dehydrogenases K20035 - - 2.122e-243 766.0
LYD2_k127_147547_1 Electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009815 402.0
LYD2_k127_147547_2 AMP binding - - - 0.00000000000000000008562 90.0
LYD2_k127_1483122_0 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 299.0
LYD2_k127_1483122_1 - - - - 0.00000000000000000000000000000000000000000000000003383 186.0
LYD2_k127_1485023_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 4.877e-281 870.0
LYD2_k127_1485023_1 - - - - 0.0000000000000000000000000000000000000000000000000000004236 197.0
LYD2_k127_1485023_2 Uncharacterized conserved protein (DUF2249) - - - 0.000000000000000000000000000002958 122.0
LYD2_k127_1485023_3 - - - - 0.00000000000000000006936 102.0
LYD2_k127_1485023_4 - - - - 0.00000000000002971 82.0
LYD2_k127_1487069_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 3.394e-205 664.0
LYD2_k127_1487069_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 289.0
LYD2_k127_1487069_2 Pilus assembly protein PilX - - - 0.000000000000004702 86.0
LYD2_k127_1496165_0 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 409.0
LYD2_k127_1496165_1 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007778 317.0
LYD2_k127_1533589_0 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005948 452.0
LYD2_k127_1533589_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001887 275.0
LYD2_k127_1533589_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000000000000000000000000000895 214.0
LYD2_k127_1548566_0 DnaJ C terminal domain K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 341.0
LYD2_k127_1548566_1 peptidase S1 and S6, chymotrypsin Hap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 334.0
LYD2_k127_1548566_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 306.0
LYD2_k127_1548566_3 Regulator K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003024 270.0
LYD2_k127_1548566_4 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000007627 229.0
LYD2_k127_1548566_5 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000002587 171.0
LYD2_k127_1548566_6 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000001095 145.0
LYD2_k127_1548566_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000003428 130.0
LYD2_k127_1548566_8 MerR HTH family regulatory protein K18997 - - 0.00000000000000156 81.0
LYD2_k127_1550107_0 O-linked N-acetylglucosamine transferase SPINDLY family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 380.0
LYD2_k127_1550107_1 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001072 305.0
LYD2_k127_1550107_2 glycosyl transferase family 2 K20444 - - 0.00000000000000000000004419 106.0
LYD2_k127_1560401_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050896,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005464 413.0
LYD2_k127_1560401_1 Protein of unknown function (DUF3426) - - - 0.00000000000000000009079 103.0
LYD2_k127_1560401_2 Ribosomal protein L11 methyltransferase K02687 - - 0.0003855 43.0
LYD2_k127_16091_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 607.0
LYD2_k127_16091_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 316.0
LYD2_k127_16091_2 Domain of unknown function DUF21 - - - 0.0000000000000000000000000000000000000000000000000000000000000007909 225.0
LYD2_k127_16091_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000000000002757 209.0
LYD2_k127_16091_4 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000000000001722 207.0
LYD2_k127_16091_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000697 151.0
LYD2_k127_16091_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000004201 130.0
LYD2_k127_16094_0 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000006405 236.0
LYD2_k127_16094_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.0000000000000000000000000000000000000000000000003984 186.0
LYD2_k127_16094_2 periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000000000116 170.0
LYD2_k127_16094_3 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000001054 154.0
LYD2_k127_16094_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000001222 100.0
LYD2_k127_16094_5 RDD family - - - 0.0000000000004989 82.0
LYD2_k127_161469_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 502.0
LYD2_k127_161469_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 300.0
LYD2_k127_161469_2 ChaC-like protein K07232 - - 0.0000002624 57.0
LYD2_k127_1615401_0 Transport of potassium into the cell K03549 - - 1.018e-223 706.0
LYD2_k127_1615401_1 Dynamin family - - - 1.822e-204 655.0
LYD2_k127_1615401_10 Conserved hypothetical protein 95 - - - 0.000000000000000000000000000000000000000000000001708 181.0
LYD2_k127_1615401_11 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000003916 158.0
LYD2_k127_1615401_12 Outer membrane lipoprotein LolB - - - 0.000000000000000000000000000005462 127.0
LYD2_k127_1615401_13 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000004375 82.0
LYD2_k127_1615401_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 450.0
LYD2_k127_1615401_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 389.0
LYD2_k127_1615401_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 376.0
LYD2_k127_1615401_5 SMART Tetratricopeptide domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 370.0
LYD2_k127_1615401_6 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 317.0
LYD2_k127_1615401_7 GHMP kinases N terminal domain K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000014 287.0
LYD2_k127_1615401_8 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000004776 245.0
LYD2_k127_1615401_9 Tripartite tricarboxylate transporter TctA family - - - 0.0000000000000000000000000000000000000000000000000000000000004858 222.0
LYD2_k127_163026_0 Aldo/keto reductase family K00064 - 1.1.1.122 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 355.0
LYD2_k127_163026_1 PFAM PHP C-terminal K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 329.0
LYD2_k127_163026_2 metal-dependent hydrolase of the TIM-barrel fold K07046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 323.0
LYD2_k127_163026_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 311.0
LYD2_k127_163026_4 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000003086 238.0
LYD2_k127_163026_5 Bacterial extracellular solute-binding protein - - - 0.000000000009063 74.0
LYD2_k127_163026_6 Transcriptional regulator - - - 0.000000000009201 65.0
LYD2_k127_1632537_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004476 341.0
LYD2_k127_1632537_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001714 272.0
LYD2_k127_1632537_2 Male sterility protein K00091,K01784 - 1.1.1.219,5.1.3.2 0.0000000000000000000000000000000000000000000000003006 183.0
LYD2_k127_1632537_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000007126 112.0
LYD2_k127_1638277_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 496.0
LYD2_k127_1638277_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 377.0
LYD2_k127_1638277_2 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000638 206.0
LYD2_k127_1638277_3 Smr domain - - - 0.000000000000000000000000000000000000000000001538 174.0
LYD2_k127_1638277_4 Protein of unknown function - - - 0.0000000000000000000000002594 108.0
LYD2_k127_1684176_0 Sodium/hydrogen exchanger family K03455,K11745,K11747 - - 1.274e-222 711.0
LYD2_k127_1684176_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 537.0
LYD2_k127_1684176_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007703 493.0
LYD2_k127_1684176_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 443.0
LYD2_k127_1684176_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 373.0
LYD2_k127_1684176_5 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 346.0
LYD2_k127_1684176_7 NADPH-quinone reductase (modulator of drug activity B) K00355,K11746,K11748 - 1.6.5.2 0.0000000000000000000000000000000000001202 145.0
LYD2_k127_1718277_0 phenylacetic acid degradation protein paaN - - - 7.036e-251 785.0
LYD2_k127_1718277_1 enoyl-CoA hydratase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 387.0
LYD2_k127_1718277_2 Oxidoreductase FAD-binding domain K02613 - - 0.000000000000000000000000000000000000000000009443 164.0
LYD2_k127_1718277_3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000003748 71.0
LYD2_k127_1724333_0 ABC-type sugar transport system, permease component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006387 276.0
LYD2_k127_1724333_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000001931 264.0
LYD2_k127_1724333_2 trna rrna methyltransferase K03437 - - 0.00000007335 54.0
LYD2_k127_177601_0 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 577.0
LYD2_k127_177601_1 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 389.0
LYD2_k127_177601_2 - - - - 0.0000000000000000000000000000000000000000009804 166.0
LYD2_k127_177601_3 Twin-arginine translocation pathway signal protein - - - 0.00000000000000000000000000000002917 133.0
LYD2_k127_177601_4 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.000000000001793 72.0
LYD2_k127_178325_0 Tripartite tricarboxylate transporter TctA family - - - 4.572e-198 622.0
LYD2_k127_178325_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 516.0
LYD2_k127_178325_2 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 512.0
LYD2_k127_178325_3 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 412.0
LYD2_k127_178325_4 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 322.0
LYD2_k127_178325_5 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000000000000183 146.0
LYD2_k127_179911_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 2.907e-202 640.0
LYD2_k127_179911_1 Hydrogenase K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 412.0
LYD2_k127_179911_2 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000000000000000000000001003 148.0
LYD2_k127_179911_3 Nickel-dependent hydrogenase - - - 0.00000000000000001425 84.0
LYD2_k127_1840370_0 Glycosyltransferases involved in cell wall biogenesis K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 410.0
LYD2_k127_1840370_1 PFAM ABC-2 type transporter K01992,K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004687 273.0
LYD2_k127_18897_0 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 358.0
LYD2_k127_18897_1 PFAM LrgB family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000192 275.0
LYD2_k127_18897_2 Cytochrome B561 K12262 - - 0.00000000000000000000000000000000000000000000000000000002481 202.0
LYD2_k127_18897_3 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000001198 192.0
LYD2_k127_18897_4 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000009983 155.0
LYD2_k127_18897_5 effector of murein hydrolase LrgA K06518 - - 0.000000000000000000000000000001995 128.0
LYD2_k127_18897_6 PFAM Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.000000001699 70.0
LYD2_k127_18897_7 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00002569 47.0
LYD2_k127_1911913_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.657e-261 809.0
LYD2_k127_1911913_1 Bifunctional enoyl-CoA hydratase phosphate acetyltransferase K00625,K00634 - 2.3.1.19,2.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 520.0
LYD2_k127_1911913_2 Psort location Cytoplasmic, score 7.50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 428.0
LYD2_k127_1911913_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 364.0
LYD2_k127_1911913_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 324.0
LYD2_k127_1911913_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000003833 185.0
LYD2_k127_1914437_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 2.604e-318 980.0
LYD2_k127_1914437_1 Sodium:sulfate symporter transmembrane region K11106,K14445 - - 6.227e-217 691.0
LYD2_k127_1914437_10 Prokaryotic cytochrome b561 K12262 - - 0.000000000000000000000000000000000003093 146.0
LYD2_k127_1914437_11 Domain of unknown function (DUF4397) - - - 0.0000000000000000000000001287 123.0
LYD2_k127_1914437_12 ankyrin repeat K06867 - - 0.0001444 55.0
LYD2_k127_1914437_2 serine protease K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 488.0
LYD2_k127_1914437_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 476.0
LYD2_k127_1914437_4 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 402.0
LYD2_k127_1914437_5 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000000000000000000000000000000000002161 237.0
LYD2_k127_1914437_6 YaeQ family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001149 235.0
LYD2_k127_1914437_7 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000003749 198.0
LYD2_k127_1914437_8 membrane K15977 - - 0.0000000000000000000000000000000000000000000000002766 180.0
LYD2_k127_1914437_9 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000001644 167.0
LYD2_k127_1914779_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 532.0
LYD2_k127_1914779_1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 424.0
LYD2_k127_1914779_2 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003875 372.0
LYD2_k127_1914779_3 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 312.0
LYD2_k127_1914779_4 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000003121 200.0
LYD2_k127_1914779_5 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000009154 192.0
LYD2_k127_1914779_6 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000003649 86.0
LYD2_k127_1918427_0 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009675 324.0
LYD2_k127_1918427_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003518 278.0
LYD2_k127_1918427_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000001043 175.0
LYD2_k127_1918427_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000008654 151.0
LYD2_k127_1919443_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 2.573e-209 662.0
LYD2_k127_1919443_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004911 528.0
LYD2_k127_1919443_10 - - - - 0.0000000000003157 78.0
LYD2_k127_1919443_2 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 321.0
LYD2_k127_1919443_3 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009346 289.0
LYD2_k127_1919443_4 anthranilate K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 285.0
LYD2_k127_1919443_5 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000589 216.0
LYD2_k127_1919443_6 - - - - 0.00000000000000000000000000000000000000000000000000000953 202.0
LYD2_k127_1919443_7 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000005568 187.0
LYD2_k127_1919443_8 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000133 143.0
LYD2_k127_1919443_9 - - - - 0.000000000000000000000000004178 128.0
LYD2_k127_1933848_0 Homoserine dehydrogenase, NAD binding domain-containing protein - - - 3.44e-211 666.0
LYD2_k127_1933848_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 320.0
LYD2_k127_1933848_2 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 316.0
LYD2_k127_1933848_3 Sodium/calcium exchanger protein K07300 - - 0.00000000000000000000000000000000000000000000000000004398 190.0
LYD2_k127_1933848_4 Haloacid dehalogenase-like hydrolase K20866 - 3.1.3.10 0.000000000000000000000000000000000000000003127 164.0
LYD2_k127_1935831_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005419 524.0
LYD2_k127_1935831_1 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000001061 228.0
LYD2_k127_1935831_2 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000002443 150.0
LYD2_k127_1937595_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.086e-229 722.0
LYD2_k127_1937595_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 605.0
LYD2_k127_1937595_10 Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors K12973 - 2.3.1.251 0.00000000000000000000000000000000000003155 151.0
LYD2_k127_1937595_11 Bacterial regulatory protein, Fis family K03557 - - 0.000000000000000000009167 95.0
LYD2_k127_1937595_12 Acylphosphatase K01512 - 3.6.1.7 0.00000000000000000006552 94.0
LYD2_k127_1937595_13 - - - - 0.0000000008311 70.0
LYD2_k127_1937595_2 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 475.0
LYD2_k127_1937595_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 457.0
LYD2_k127_1937595_4 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 359.0
LYD2_k127_1937595_5 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 338.0
LYD2_k127_1937595_6 FAD binding domain K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 315.0
LYD2_k127_1937595_7 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001035 245.0
LYD2_k127_1937595_8 Psort location Cytoplasmic, score 8.96 K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000003118 229.0
LYD2_k127_1937595_9 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000001294 188.0
LYD2_k127_1953349_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1434.0
LYD2_k127_1953349_1 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 1.375e-287 898.0
LYD2_k127_1953349_2 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 1.066e-201 633.0
LYD2_k127_1953349_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 298.0
LYD2_k127_1953349_4 Protein of unknown function (DUF2442) - - - 0.00000000000000001624 87.0
LYD2_k127_1958128_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 1.653e-229 731.0
LYD2_k127_1958128_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000002356 183.0
LYD2_k127_1958128_2 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000005867 73.0
LYD2_k127_1959700_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 2.827e-235 754.0
LYD2_k127_1959700_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 4.623e-214 674.0
LYD2_k127_1959700_10 - - - - 0.00000000000000000000000000000000000000000000000000000003531 214.0
LYD2_k127_1959700_11 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000002417 198.0
LYD2_k127_1959700_12 Beta/gamma crystallins - - - 0.00000000000000000000000000000000000000000001035 177.0
LYD2_k127_1959700_13 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788 - - 0.00000000000000000000000000000000000006289 143.0
LYD2_k127_1959700_14 YXWGXW repeat (2 copies) - - - 0.000000000000000000000000000005357 126.0
LYD2_k127_1959700_15 PAS domain - - - 0.00000000000000000000001502 106.0
LYD2_k127_1959700_16 YMGG-like Gly-zipper - - - 0.00000000000000000001676 97.0
LYD2_k127_1959700_17 PFAM zinc finger, DksA TraR C4-type - - - 0.00000000000000005435 86.0
LYD2_k127_1959700_2 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06132 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0090483,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 529.0
LYD2_k127_1959700_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005916 445.0
LYD2_k127_1959700_4 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 430.0
LYD2_k127_1959700_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 403.0
LYD2_k127_1959700_6 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000943 371.0
LYD2_k127_1959700_7 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 324.0
LYD2_k127_1959700_8 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 302.0
LYD2_k127_1959700_9 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000006561 217.0
LYD2_k127_1972784_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 1.052e-211 670.0
LYD2_k127_1972784_1 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000003444 97.0
LYD2_k127_1974488_0 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 366.0
LYD2_k127_1974488_1 ATPase MipZ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001581 264.0
LYD2_k127_1974488_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.00000000000000000000000000000000000000000000000003436 195.0
LYD2_k127_1974488_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000002995 122.0
LYD2_k127_1974488_4 - - - - 0.00000272 54.0
LYD2_k127_1977670_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 1.75e-321 1024.0
LYD2_k127_1977670_1 tRNA wobble cytosine modification - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 456.0
LYD2_k127_1977670_10 Short-chain dehydrogenase reductase (SDR) - - - 0.0000000000000000000000000000001942 136.0
LYD2_k127_1977670_11 Cell division and transport-associated protein TolA K03646 - - 0.000000000000000000000000002032 123.0
LYD2_k127_1977670_12 ATPase family associated with various cellular activities (AAA) - - - 0.0000002825 59.0
LYD2_k127_1977670_13 - - - - 0.000002703 61.0
LYD2_k127_1977670_14 - - - - 0.00002802 55.0
LYD2_k127_1977670_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 404.0
LYD2_k127_1977670_3 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 297.0
LYD2_k127_1977670_4 MotA TolQ ExbB proton channel family K03561,K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006323 282.0
LYD2_k127_1977670_5 peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000001478 187.0
LYD2_k127_1977670_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000001131 167.0
LYD2_k127_1977670_7 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000002073 159.0
LYD2_k127_1977670_8 Protein of unknown function (DUF3025) - - - 0.0000000000000000000000000000000000000004098 160.0
LYD2_k127_1977670_9 Tol-Pal system-associated acyl-CoA thioesterase K07107 - - 0.0000000000000000000000000000000002966 137.0
LYD2_k127_1977773_0 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 9.885e-255 800.0
LYD2_k127_1977773_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007584 516.0
LYD2_k127_1977773_10 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 420.0
LYD2_k127_1977773_11 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 398.0
LYD2_k127_1977773_12 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 383.0
LYD2_k127_1977773_13 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 333.0
LYD2_k127_1977773_14 Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity K01118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003807 269.0
LYD2_k127_1977773_15 HlyD family K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003499 274.0
LYD2_k127_1977773_16 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005883 252.0
LYD2_k127_1977773_17 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008533 253.0
LYD2_k127_1977773_18 HD domain K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000002592 226.0
LYD2_k127_1977773_19 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000007439 174.0
LYD2_k127_1977773_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 506.0
LYD2_k127_1977773_20 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000002089 192.0
LYD2_k127_1977773_21 Domain of unknown function (DUF4824) - - - 0.0000000000000000000000000000000000136 151.0
LYD2_k127_1977773_22 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000000007314 127.0
LYD2_k127_1977773_23 - - - - 0.000000000000000003153 91.0
LYD2_k127_1977773_3 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 492.0
LYD2_k127_1977773_4 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 488.0
LYD2_k127_1977773_5 Dehydrogenase E1 component K00161,K21416 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 464.0
LYD2_k127_1977773_6 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 446.0
LYD2_k127_1977773_7 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583 439.0
LYD2_k127_1977773_8 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 443.0
LYD2_k127_1977773_9 Protein of unknown function (DUF1615) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 434.0
LYD2_k127_1983343_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 1.516e-247 774.0
LYD2_k127_1983343_1 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 539.0
LYD2_k127_1983343_10 Belongs to the ABC transporter superfamily K02031 - - 0.0000001054 54.0
LYD2_k127_1983343_2 Oligopeptide/dipeptide transporter, C-terminal region K02031,K12371 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 499.0
LYD2_k127_1983343_3 Binding-protein-dependent transport system inner membrane component K12369 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008896 482.0
LYD2_k127_1983343_4 ABC-type dipeptide oligopeptide nickel transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 473.0
LYD2_k127_1983343_5 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007354 439.0
LYD2_k127_1983343_6 N-terminal TM domain of oligopeptide transport permease C K02034,K12370 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 422.0
LYD2_k127_1983343_7 Belongs to the ABC transporter superfamily K12372 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 437.0
LYD2_k127_1983343_8 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 409.0
LYD2_k127_1983343_9 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K12368 - - 0.000000000000000000000000000000000000000000000000000000000004702 209.0
LYD2_k127_2000161_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 484.0
LYD2_k127_2000161_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 318.0
LYD2_k127_2000161_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 310.0
LYD2_k127_2000161_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 286.0
LYD2_k127_2000161_4 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002249 268.0
LYD2_k127_2000161_5 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000001082 220.0
LYD2_k127_2000161_6 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000001362 208.0
LYD2_k127_2000161_7 Biopolymer transport protein K03559 - - 0.000000000000000000000000000000000000000008793 157.0
LYD2_k127_2000161_8 Belongs to the UPF0434 family K09791 - - 0.0000000000000000000000001955 107.0
LYD2_k127_2000161_9 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.0000000000001855 72.0
LYD2_k127_2007561_0 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 441.0
LYD2_k127_2007561_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001199 278.0
LYD2_k127_201376_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 512.0
LYD2_k127_201376_1 NUDIX domain K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007405 369.0
LYD2_k127_201376_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 300.0
LYD2_k127_201376_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000004449 205.0
LYD2_k127_201376_4 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000002239 179.0
LYD2_k127_201376_5 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000001285 145.0
LYD2_k127_2018549_0 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000897 522.0
LYD2_k127_2018549_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000006477 235.0
LYD2_k127_2018549_2 Bacterial extracellular solute-binding protein K02027 - - 0.00000109 51.0
LYD2_k127_2023115_0 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001286 262.0
LYD2_k127_2023115_1 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002212 248.0
LYD2_k127_2023115_2 Hemerythrin HHE cation binding domain K01996 - - 0.0004132 44.0
LYD2_k127_2024880_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1071.0
LYD2_k127_2024880_1 Heat shock 70 kDa protein K04043 - - 0.0 1033.0
LYD2_k127_2024880_10 Ketosteroid K06893 - - 0.00000000000000000000001755 101.0
LYD2_k127_2024880_11 - - - - 0.00000000001986 71.0
LYD2_k127_2024880_2 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 6.363e-276 855.0
LYD2_k127_2024880_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 586.0
LYD2_k127_2024880_4 branched-chain amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006311 495.0
LYD2_k127_2024880_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 407.0
LYD2_k127_2024880_6 Two component regulator three Y domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 413.0
LYD2_k127_2024880_7 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 365.0
LYD2_k127_2024880_8 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000000000000009436 178.0
LYD2_k127_2024880_9 MobA-Related Protein K07141 - 2.7.7.76 0.000000000000000000000000000000000000000000001697 183.0
LYD2_k127_202909_0 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 4.092e-317 986.0
LYD2_k127_202909_1 Belongs to the thiolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 601.0
LYD2_k127_202909_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 553.0
LYD2_k127_202909_3 protein involved in response to NO K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 350.0
LYD2_k127_202909_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 303.0
LYD2_k127_202909_5 FCD - - - 0.000000000000000000000000000000000000001163 169.0
LYD2_k127_2035114_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 4.893e-239 749.0
LYD2_k127_2035114_1 peptidylprolyl isomerase K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006825 494.0
LYD2_k127_2035114_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 396.0
LYD2_k127_2035114_3 - - - - 0.00000000007469 64.0
LYD2_k127_2037245_0 HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.000000000000000000000000000000000000000000000000000000000000000003299 237.0
LYD2_k127_2037245_1 Ni,Fe-hydrogenase I large subunit - - - 0.000000000000000000000000000000000000000000000000727 192.0
LYD2_k127_2037245_2 Hydrogenase-1 expression protein HyaE - - - 0.00000000000000000000000004641 111.0
LYD2_k127_2037245_3 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.0000000000000000000000002267 115.0
LYD2_k127_2037245_4 Rubredoxin - - - 0.0000000000000000000004026 109.0
LYD2_k127_206052_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 555.0
LYD2_k127_206052_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002452 252.0
LYD2_k127_206052_2 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000000000005663 174.0
LYD2_k127_2061986_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 6.39e-287 890.0
LYD2_k127_2061986_1 transcriptional Regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000001596 221.0
LYD2_k127_2061986_2 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000000000000493 197.0
LYD2_k127_2061986_3 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000001262 116.0
LYD2_k127_2061986_4 Phosphoenolpyruvate phosphomutase - - - 0.000000000000000000001899 94.0
LYD2_k127_2068881_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.969e-294 910.0
LYD2_k127_2068881_1 PFAM Malic enzyme, NAD binding domain K00029 - 1.1.1.40 6.288e-248 776.0
LYD2_k127_2068881_2 NADH dehydrogenase (ubiquinone) activity K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000000000001062 152.0
LYD2_k127_2074050_0 Malic enzyme K00029 - 1.1.1.40 1.65e-305 949.0
LYD2_k127_2074050_1 Prolyl oligopeptidase - - - 4.097e-214 685.0
LYD2_k127_2074050_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 521.0
LYD2_k127_2074050_3 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 397.0
LYD2_k127_2074050_4 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 400.0
LYD2_k127_2074050_5 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009442 298.0
LYD2_k127_2074050_6 protein histidine kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003895 307.0
LYD2_k127_20790_0 FAD binding domain K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 334.0
LYD2_k127_20790_1 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 294.0
LYD2_k127_20790_2 Belongs to the anti-sigma-factor antagonist family - - - 0.000000000000000000000000000000000000002188 163.0
LYD2_k127_20790_3 Disulfide bond isomerase protein N-terminus K03981 - 5.3.4.1 0.00000000000000000000000000000000000006613 152.0
LYD2_k127_208287_0 AMP-binding enzyme K00666,K20034 - 6.2.1.44 1.176e-292 906.0
LYD2_k127_208287_1 Peptidase M1 membrane alanine aminopeptidase - - - 2.226e-286 910.0
LYD2_k127_208287_10 - - - - 0.000000000000003308 80.0
LYD2_k127_208287_11 Major facilitator superfamily K03446 - - 0.00000000000001223 76.0
LYD2_k127_208287_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 527.0
LYD2_k127_208287_3 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007352 548.0
LYD2_k127_208287_4 secretion protein HlyD family K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 455.0
LYD2_k127_208287_5 COG1538 Outer membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 448.0
LYD2_k127_208287_6 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000919 364.0
LYD2_k127_208287_7 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005966 273.0
LYD2_k127_208287_8 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000001545 181.0
LYD2_k127_208287_9 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000008654 145.0
LYD2_k127_2098887_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 469.0
LYD2_k127_2098887_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 293.0
LYD2_k127_2105931_0 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 596.0
LYD2_k127_2105931_1 Nitrate reductase delta subunit - - - 0.0000000000000000000000000000000000000000000000003533 183.0
LYD2_k127_2113647_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 436.0
LYD2_k127_2113647_1 PFAM iron permease FTR1 K07243 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 355.0
LYD2_k127_2113647_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000004311 241.0
LYD2_k127_2113647_3 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000000006807 164.0
LYD2_k127_2120388_0 Thiolase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 610.0
LYD2_k127_2120388_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 414.0
LYD2_k127_2120388_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000004836 197.0
LYD2_k127_2121094_0 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009183 333.0
LYD2_k127_2121094_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 336.0
LYD2_k127_2121094_2 Alpha beta K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000005634 229.0
LYD2_k127_2121094_3 ferredoxin - - - 0.00000000000000000000000000000000000000000000007343 171.0
LYD2_k127_2121094_4 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.000000000000007306 78.0
LYD2_k127_2123552_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 441.0
LYD2_k127_2123552_1 Chalcone isomerase-like - - - 0.000000000000000000000000000000000000000000008765 169.0
LYD2_k127_2123552_2 - - - - 0.0000000000000005178 87.0
LYD2_k127_2123552_3 Tetratricopeptide repeat - - - 0.000001265 51.0
LYD2_k127_2123953_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 3.135e-194 616.0
LYD2_k127_2123953_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 293.0
LYD2_k127_2123953_2 COG2009 Succinate dehydrogenase fumarate reductase, cytochrome b subunit K00241 - - 0.000000000000000000000000000000000007563 146.0
LYD2_k127_2123953_3 Succinate dehydrogenase, hydrophobic K00242 - - 0.0000000000000000000000000000000007799 134.0
LYD2_k127_2140233_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 373.0
LYD2_k127_2140233_1 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 352.0
LYD2_k127_2149395_0 carboxylase K01965 - 6.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 541.0
LYD2_k127_2149395_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 533.0
LYD2_k127_2149395_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 370.0
LYD2_k127_2149395_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 344.0
LYD2_k127_2149395_4 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000003416 257.0
LYD2_k127_2149395_5 Protein of unknown function (DUF3530) - - - 0.000000000000000000000000000000000000000000000000004706 192.0
LYD2_k127_2150793_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 5.161e-199 630.0
LYD2_k127_2150793_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000842 138.0
LYD2_k127_2150793_2 - - - - 0.00001529 52.0
LYD2_k127_2154555_0 SPFH domain-Band 7 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 434.0
LYD2_k127_2154555_1 tRNA wobble cytosine modification - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 391.0
LYD2_k127_2169101_0 4-hydroxyphenylacetate K00483,K14534 - 1.14.14.9,4.2.1.120,5.3.3.3 1.897e-226 715.0
LYD2_k127_2169101_1 SpoVR family K06415 - - 3.89e-221 694.0
LYD2_k127_2169101_10 Universal stress protein family - - - 0.00000000000000000000000000000000003142 139.0
LYD2_k127_2169101_11 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.0002045 45.0
LYD2_k127_2169101_2 Protein tyrosine kinase K12132 - 2.7.11.1 5.806e-205 664.0
LYD2_k127_2169101_3 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 579.0
LYD2_k127_2169101_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 354.0
LYD2_k127_2169101_5 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 340.0
LYD2_k127_2169101_6 Creatinine amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000839 322.0
LYD2_k127_2169101_7 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000003856 258.0
LYD2_k127_2169101_8 - - - - 0.00000000000000000000000000000000000000000000000000001276 197.0
LYD2_k127_2169101_9 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000009018 146.0
LYD2_k127_2196525_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 2.115e-260 810.0
LYD2_k127_2196525_1 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01039 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000001742 245.0
LYD2_k127_2196525_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15372 - 2.6.1.55 0.000000000000000000000000000000009343 128.0
LYD2_k127_2201663_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000003804 102.0
LYD2_k127_2201663_1 Autotransporter beta-domain - - - 0.000000000000000002232 100.0
LYD2_k127_2201669_0 glycolate biosynthetic process K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000002615 263.0
LYD2_k127_2223206_0 Organic solvent tolerance protein K04744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 593.0
LYD2_k127_2223206_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 467.0
LYD2_k127_2223206_2 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 432.0
LYD2_k127_2223206_3 Nucleotidyl transferase K00992 - 2.7.7.99 0.00000000000000000000000000000000000000000000000000000000000000000000000001386 259.0
LYD2_k127_2223206_4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K01337 - 3.4.21.50 0.000000000000000000000000000000000000000000000000000000002942 227.0
LYD2_k127_2223206_5 Subtilase family - - - 0.00000000000000000006148 106.0
LYD2_k127_2228652_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 1.842e-266 842.0
LYD2_k127_2228652_1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000009722 177.0
LYD2_k127_2228652_2 PFAM regulatory protein, MerR - - - 0.000000000000000000000000000000000000000000025 165.0
LYD2_k127_2228652_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000002679 117.0
LYD2_k127_2240833_0 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000000000000000000006794 208.0
LYD2_k127_2240833_1 - - - - 0.000000000000000000000000000000000000000000000000000000004906 206.0
LYD2_k127_2240833_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000000000000000000001328 177.0
LYD2_k127_2240833_3 - - - - 0.00000000000000000000000000000000001692 147.0
LYD2_k127_2288515_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009017 366.0
LYD2_k127_2288515_1 poly(R)-hydroxyalkanoic acid synthase K03821 - - 0.0000000000000000000000000000000000000000000000000004562 190.0
LYD2_k127_2288515_2 Thioesterase superfamily - - - 0.000000000000000000000000000000000000001399 152.0
LYD2_k127_2288515_3 transcriptional - - - 0.00000000000000000000000000000000001426 143.0
LYD2_k127_229697_0 Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate K01815 - 5.3.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 459.0
LYD2_k127_229697_1 Enoyl-(Acyl carrier protein) reductase K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 331.0
LYD2_k127_2307129_0 asparagine K01953 - 6.3.5.4 6.918e-197 641.0
LYD2_k127_2307129_1 glycosyl transferase K16701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 395.0
LYD2_k127_2307129_2 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 377.0
LYD2_k127_2307129_3 Isoprenylcysteine carboxyl methyltransferase - - - 0.000000003143 67.0
LYD2_k127_2321422_0 enoyl-CoA hydratase K15513 - 4.1.2.44 1.923e-261 818.0
LYD2_k127_2321422_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 1.798e-257 799.0
LYD2_k127_2321422_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K15546 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 363.0
LYD2_k127_2321422_3 Oxidoreductase NAD-binding domain K15511 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000000000005464 241.0
LYD2_k127_2370031_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000012 228.0
LYD2_k127_2370031_1 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000002918 194.0
LYD2_k127_2370031_2 Protein of unknown function (DUF3305) - - - 0.000000000000000000000000000000002322 139.0
LYD2_k127_2370031_3 Protein of unknown function (DUF3306) - - - 0.000000000000000000000002213 111.0
LYD2_k127_2403584_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 565.0
LYD2_k127_2403584_1 Ammonium Transporter K03320,K06580 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 283.0
LYD2_k127_241744_0 ABC-type dipeptide transport system, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 408.0
LYD2_k127_241744_1 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002882 291.0
LYD2_k127_241744_10 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.000000000000000000000000005559 117.0
LYD2_k127_241744_11 KR domain K00046,K00065 - 1.1.1.127,1.1.1.69 0.00000000000000000000005974 98.0
LYD2_k127_241744_12 Cysteine-rich CWC - - - 0.0000000000000004405 79.0
LYD2_k127_241744_13 hydrogenase expression formation protein K03605 GO:0003674,GO:0003824,GO:0004175,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000002845 59.0
LYD2_k127_241744_2 Lysine exporter protein (Lyse ygga) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004337 248.0
LYD2_k127_241744_3 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000006705 211.0
LYD2_k127_241744_4 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000000000008774 198.0
LYD2_k127_241744_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.00000000000000000000000000000000000000000000000000008834 203.0
LYD2_k127_241744_6 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000002383 189.0
LYD2_k127_241744_7 Opioid growth factor receptor (OGFr) conserved region - - - 0.0000000000000000000000000000000000000000000008835 171.0
LYD2_k127_241744_8 PFAM Thioredoxin domain K03671 - - 0.000000000000000000000000000000000000000000009801 169.0
LYD2_k127_241744_9 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.00000000000000000000000000000002268 137.0
LYD2_k127_2445288_0 PFAM Mannosyl oligosaccharide glucosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 470.0
LYD2_k127_2445288_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01835 - 5.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 313.0
LYD2_k127_2461492_0 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 334.0
LYD2_k127_2461492_1 Transcriptional regulator K04033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006926 292.0
LYD2_k127_2461492_2 Protein of unknown function (DUF1329) - - - 0.0000000000000000000000000000000000000000000000000000000000005983 214.0
LYD2_k127_2461492_3 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.00000000000000000000000000000000002129 137.0
LYD2_k127_2470108_0 4-alpha-glucanotransferase K01214,K02438 - 3.2.1.196,3.2.1.68 0.0 1436.0
LYD2_k127_2470108_1 pyruvate phosphate dikinase K01006,K01007 - 2.7.9.1,2.7.9.2 1.68e-256 799.0
LYD2_k127_2470108_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 2.651e-217 680.0
LYD2_k127_2470108_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008008 606.0
LYD2_k127_2470108_4 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 GO:0000272,GO:0003674,GO:0003824,GO:0004645,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0008144,GO:0008150,GO:0008152,GO:0008184,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0015980,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0055114,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901575 2.4.1.1 0.00000000000000000000002859 100.0
LYD2_k127_254092_0 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004596 261.0
LYD2_k127_254092_1 TIGRFAM Methylglyoxal synthase K01734 - 4.2.3.3 0.00000000000000000000000000000000000000000000000000000000003381 215.0
LYD2_k127_254092_2 N-acetyltransferase - - - 0.0000000000000000000000000000000000000544 153.0
LYD2_k127_2542872_0 Signal transduction histidine kinase - - - 2.685e-208 672.0
LYD2_k127_2542872_1 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005124 398.0
LYD2_k127_2548285_0 Domain of Unknown Function (DUF349) - - - 0.0000000000000000000000000000000000000000000000000008172 210.0
LYD2_k127_2548285_1 - - - - 0.00000000000000000000000000000000001606 140.0
LYD2_k127_2548285_2 Protein of unknown function (DUF3095) - - - 0.00001815 49.0
LYD2_k127_2551710_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 504.0
LYD2_k127_2551710_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 340.0
LYD2_k127_2551710_10 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000001015 154.0
LYD2_k127_2551710_11 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 0.0000000000000000000000000000000009561 130.0
LYD2_k127_2551710_12 FR47-like protein - - - 0.0000000000000000000000000000003976 138.0
LYD2_k127_2551710_13 Transcriptional regulator - - - 0.000000000000000000000000000009838 126.0
LYD2_k127_2551710_2 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 320.0
LYD2_k127_2551710_3 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007316 280.0
LYD2_k127_2551710_4 fumarylacetoacetate hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001828 280.0
LYD2_k127_2551710_5 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000743 248.0
LYD2_k127_2551710_6 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000001435 227.0
LYD2_k127_2551710_7 Belongs to the CinA family K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000002767 199.0
LYD2_k127_2551710_8 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000005535 171.0
LYD2_k127_2551710_9 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000003597 170.0
LYD2_k127_2554045_0 Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 411.0
LYD2_k127_2554045_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000001405 263.0
LYD2_k127_2563073_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.103e-234 731.0
LYD2_k127_2563073_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009178 502.0
LYD2_k127_2563073_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 324.0
LYD2_k127_2563073_3 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.000000000000000000000000000000000000000000000000000000000000000000000000004074 259.0
LYD2_k127_2563073_4 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000001213 250.0
LYD2_k127_2563073_5 OmpA family K03286 - - 0.000000000000000000000000000000000000000000000000002314 192.0
LYD2_k127_2565981_0 Elongation factor G, domain IV K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 434.0
LYD2_k127_2565981_1 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000005697 172.0
LYD2_k127_2573075_0 nitrite transporter K02575 - - 3.51e-312 962.0
LYD2_k127_2573075_1 nitrite transmembrane transporter activity K02575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 522.0
LYD2_k127_2578282_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000007508 224.0
LYD2_k127_2578282_1 PFAM MmgE PrpD family protein - - - 0.00000000000000000000000000000000000000000000000002766 183.0
LYD2_k127_2578282_2 BON domain - - - 0.000000000000001405 83.0
LYD2_k127_2581618_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 520.0
LYD2_k127_2581618_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 412.0
LYD2_k127_2581618_2 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005579 244.0
LYD2_k127_2581618_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000000000000000000000114 222.0
LYD2_k127_2581618_4 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000000000005173 209.0
LYD2_k127_2581618_5 OsmC-like protein K07397 - - 0.000000000000000000000000000000000000000000000000004151 190.0
LYD2_k127_2581618_6 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000006367 146.0
LYD2_k127_2581618_7 - - - - 0.00000000000000000000000000000002112 136.0
LYD2_k127_2581618_8 Protein of unknown function (DUF1254) - - - 0.000000000002534 68.0
LYD2_k127_2595959_0 belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 3.557e-263 815.0
LYD2_k127_2595959_1 LysR substrate binding domain K21645 - - 0.000000000000000000000000000000000000000000000000000000000000005521 220.0
LYD2_k127_2595959_2 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000001038 164.0
LYD2_k127_2600966_0 ABC-type dipeptide transport system, periplasmic K02035,K13889 - - 5.329e-239 746.0
LYD2_k127_2600966_1 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 1.195e-225 720.0
LYD2_k127_2600966_2 COG0464 ATPases of the AAA class - - - 2.595e-208 658.0
LYD2_k127_2600966_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K13890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 494.0
LYD2_k127_2600966_4 PFAM binding-protein-dependent transport systems inner membrane component K13891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 490.0
LYD2_k127_2600966_5 PFAM peptidase S58, DmpA K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006452 400.0
LYD2_k127_2600966_6 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 302.0
LYD2_k127_2600966_7 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily K06968 - 2.1.1.186 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 296.0
LYD2_k127_2600966_8 Transmembrane secretion effector - - - 0.000000000000000000000000000000000009286 140.0
LYD2_k127_2600966_9 KR domain - - - 0.00005705 54.0
LYD2_k127_2614840_0 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 481.0
LYD2_k127_2614840_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006542 397.0
LYD2_k127_2614840_2 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 305.0
LYD2_k127_2614840_3 (Lipo)protein K07287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 310.0
LYD2_k127_2614840_4 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000304 281.0
LYD2_k127_2614840_5 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000001088 227.0
LYD2_k127_2614840_6 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000001747 192.0
LYD2_k127_2614840_7 cytochrome C oxidoreductase subunit B - - - 0.000000000000009187 86.0
LYD2_k127_2616471_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 7.12e-262 836.0
LYD2_k127_2616471_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 7.512e-238 750.0
LYD2_k127_2616471_10 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000000000000004986 231.0
LYD2_k127_2616471_11 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000000000000000000000000000000000000000000000000002123 201.0
LYD2_k127_2616471_12 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000002163 162.0
LYD2_k127_2616471_13 SnoaL-like domain - - - 0.0000000000000000000000001604 123.0
LYD2_k127_2616471_14 Zinc-finger domain - - - 0.00000000000000000234 87.0
LYD2_k127_2616471_15 SMP-30/Gluconolaconase/LRE-like region - - - 0.000000007603 59.0
LYD2_k127_2616471_2 TldD PmbA family protein K03568 - - 4.893e-218 689.0
LYD2_k127_2616471_3 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 6.162e-203 646.0
LYD2_k127_2616471_4 amino acid K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 519.0
LYD2_k127_2616471_5 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 473.0
LYD2_k127_2616471_6 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 420.0
LYD2_k127_2616471_7 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005635 374.0
LYD2_k127_2616471_8 ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 313.0
LYD2_k127_2616471_9 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 322.0
LYD2_k127_2616871_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 443.0
LYD2_k127_2616871_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003065 285.0
LYD2_k127_2616871_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00058,K12972 - 1.1.1.399,1.1.1.79,1.1.1.81,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000001878 243.0
LYD2_k127_2616871_3 Sulfatase K01130 - 3.1.6.1 0.00000000000007755 71.0
LYD2_k127_2616871_4 Transport permease protein K09694 - - 0.0000002889 54.0
LYD2_k127_2630614_0 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 584.0
LYD2_k127_2630614_1 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 391.0
LYD2_k127_2630614_2 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008127 307.0
LYD2_k127_2630614_3 COG0725 ABC-type molybdate transport system, periplasmic component K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001917 274.0
LYD2_k127_2630614_4 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001327 261.0
LYD2_k127_2630614_5 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.00000000000000000000000000000000000001937 149.0
LYD2_k127_2630614_6 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000003498 94.0
LYD2_k127_2639520_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 4.254e-313 967.0
LYD2_k127_2639520_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003736 470.0
LYD2_k127_2645595_0 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 1.853e-242 753.0
LYD2_k127_2645595_1 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005928 514.0
LYD2_k127_2645595_2 Belongs to the ClpA ClpB family K03694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001731 359.0
LYD2_k127_2645595_3 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009795 321.0
LYD2_k127_2645595_4 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 283.0
LYD2_k127_2645595_5 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002069 299.0
LYD2_k127_2645595_6 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.00000000000000000000000000000000000000000000000000000000000000000000005293 248.0
LYD2_k127_2645595_7 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.000000000000000000000000000000000000000001658 157.0
LYD2_k127_2645595_8 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000009272 150.0
LYD2_k127_2645595_9 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000000000000009605 136.0
LYD2_k127_2645756_0 Belongs to the HypD family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 489.0
LYD2_k127_2645756_1 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 441.0
LYD2_k127_2645756_2 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.00000000000000000000002872 109.0
LYD2_k127_2658431_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 484.0
LYD2_k127_2658431_1 Aspartyl/Asparaginyl beta-hydroxylase K00476,K12979 - 1.14.11.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005924 389.0
LYD2_k127_2658431_2 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 357.0
LYD2_k127_2658431_3 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002475 277.0
LYD2_k127_2658431_4 lipid A biosynthesis K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000009263 256.0
LYD2_k127_266522_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 4.457e-245 778.0
LYD2_k127_266522_1 Mut7-C ubiquitin K09122 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 399.0
LYD2_k127_266522_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 386.0
LYD2_k127_266522_3 Virulence factor BrkB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009863 374.0
LYD2_k127_2665973_0 ABC transporter K10831 - 3.6.3.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 383.0
LYD2_k127_2665973_1 taurine ABC transporter K15551 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 326.0
LYD2_k127_2665973_2 binding-protein-dependent transport systems inner membrane component K02050,K15552 - - 0.0000000000000000000000000000000000000000000000000000000000000000005284 239.0
LYD2_k127_2682437_0 Vitamin B12 dependent methionine synthase activation region K00548 - 2.1.1.13 6.314e-269 840.0
LYD2_k127_2682437_1 Cytochrome c - - - 0.000000000000000000001903 99.0
LYD2_k127_2682437_2 Thioesterase-like superfamily K07107 - - 0.00000000000000005082 83.0
LYD2_k127_2688461_0 Male sterility protein - - - 1.53e-293 916.0
LYD2_k127_2688461_1 Protein of unknown function (DUF1298) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 433.0
LYD2_k127_2688461_2 esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 393.0
LYD2_k127_2688461_3 GMC oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 327.0
LYD2_k127_2688461_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 295.0
LYD2_k127_2688461_5 Amino acid ABC transporter substrate-binding protein K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002397 274.0
LYD2_k127_2688461_6 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000000000000001186 220.0
LYD2_k127_2688461_7 PFAM acyl-coA-binding protein, ACBP - - - 0.0000000000000000000000002607 108.0
LYD2_k127_2688461_8 PFAM poly granule associated family protein - - - 0.000000000000003707 88.0
LYD2_k127_2688461_9 PGAP1-like protein - - - 0.0007936 44.0
LYD2_k127_2688550_0 extracellular alpha-helical protein K06894 - - 0.0 1323.0
LYD2_k127_2689937_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 376.0
LYD2_k127_2689937_1 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 375.0
LYD2_k127_2701627_0 Aldehyde dehydrogenase family - - - 2.639e-194 618.0
LYD2_k127_2701627_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004486,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0019752,GO:0034641,GO:0042558,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000004123 172.0
LYD2_k127_2701627_2 Peptidase C26 K01658,K07010 - 4.1.3.27 0.000000000001133 69.0
LYD2_k127_2702807_0 May be the GTPase, regulating ATP sulfurylase activity K00955 GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0044237 2.7.1.25,2.7.7.4 2.16e-205 657.0
LYD2_k127_2702807_1 peptidase K19304 - - 0.00000000000000000000000000000000000000000004858 166.0
LYD2_k127_2708374_0 Aminotransferase K14261 - - 2.095e-211 662.0
LYD2_k127_2708374_1 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 402.0
LYD2_k127_2708374_2 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 345.0
LYD2_k127_2708374_3 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 327.0
LYD2_k127_2708374_4 ABC-2 type transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 317.0
LYD2_k127_2708374_5 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000005035 206.0
LYD2_k127_2708374_6 DegT/DnrJ/EryC1/StrS aminotransferase family K14260 - 2.6.1.2,2.6.1.66 0.000000000000000000000000000008528 120.0
LYD2_k127_2708374_7 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000000000003293 120.0
LYD2_k127_2732685_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 3.269e-245 768.0
LYD2_k127_2732685_1 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 341.0
LYD2_k127_2732685_2 Beta/gamma crystallins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008645 314.0
LYD2_k127_2732685_3 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001115 285.0
LYD2_k127_2732685_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000002488 218.0
LYD2_k127_2732685_5 PAS domain K06930 - - 0.0000000000000000000000000001213 135.0
LYD2_k127_2732685_6 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000001536 113.0
LYD2_k127_2732685_7 PFAM response regulator receiver - - - 0.0000000000000002294 84.0
LYD2_k127_2732685_8 - - - - 0.0000000000000147 80.0
LYD2_k127_2753293_0 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 360.0
LYD2_k127_2753293_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003541 252.0
LYD2_k127_2753293_2 Cytochrome c-type biogenesis protein CcmF K02198 - - 0.00000000000000000000000000000000000000000000000000000000000123 213.0
LYD2_k127_2753293_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000001761 205.0
LYD2_k127_2753293_4 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000003941 133.0
LYD2_k127_2753293_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.00002176 55.0
LYD2_k127_2770190_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 8.094e-298 931.0
LYD2_k127_2770190_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 375.0
LYD2_k127_2771899_0 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005588 558.0
LYD2_k127_2771899_1 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 319.0
LYD2_k127_2771899_2 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000002655 266.0
LYD2_k127_2771899_3 ThiS family K03636 - - 0.000000000000000273 85.0
LYD2_k127_2772158_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005511 532.0
LYD2_k127_2777375_0 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006752 475.0
LYD2_k127_2777375_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 289.0
LYD2_k127_2777375_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000006681 156.0
LYD2_k127_2777375_3 dksA traR - - - 0.000000000000000007168 95.0
LYD2_k127_2777375_4 KTSC domain - - - 0.0000000000000001426 81.0
LYD2_k127_2780742_0 Acts as a magnesium transporter K06213 - - 6.147e-196 625.0
LYD2_k127_2780742_1 RNB K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 614.0
LYD2_k127_2780742_10 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000005964 163.0
LYD2_k127_2780742_11 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000002094 153.0
LYD2_k127_2780742_12 Esterase, phb depolymerase family - - - 0.00000000000002999 77.0
LYD2_k127_2780742_13 KR domain K00019 - 1.1.1.30 0.00001736 53.0
LYD2_k127_2780742_2 PFAM acyl-CoA dehydrogenase domain protein K00249,K07545 - 1.3.8.3,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 561.0
LYD2_k127_2780742_3 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 323.0
LYD2_k127_2780742_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008291 317.0
LYD2_k127_2780742_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004565 275.0
LYD2_k127_2780742_6 TIGRFAM TonB family protein K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005748 265.0
LYD2_k127_2780742_7 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.00000000000000000000000000000000000000000000000000000000008811 213.0
LYD2_k127_2780742_8 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000000002211 196.0
LYD2_k127_2780742_9 Secreted repeat of unknown function - - - 0.0000000000000000000000000000000000000000000007799 171.0
LYD2_k127_278344_0 AMP-binding enzyme C-terminal domain - - - 3.978e-277 866.0
LYD2_k127_278344_1 Transport of potassium into the cell K03549 - - 3.13e-253 796.0
LYD2_k127_278344_10 Cytochrome c - - - 0.00000001619 61.0
LYD2_k127_278344_2 Domain of unknown function (DUF4118) K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 587.0
LYD2_k127_278344_3 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 434.0
LYD2_k127_278344_4 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004831 335.0
LYD2_k127_278344_5 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004236 278.0
LYD2_k127_278344_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000008551 269.0
LYD2_k127_278344_7 Isochorismatase hydrolase - - - 0.0000000000000000000000000000000000000000000001453 174.0
LYD2_k127_278344_8 PFAM Peptidase M48 K06013 - 3.4.24.84 0.000000000000000000000000000001669 122.0
LYD2_k127_278344_9 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.000000000000000000000000000008832 123.0
LYD2_k127_2799111_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 465.0
LYD2_k127_2799111_1 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000003654 171.0
LYD2_k127_2799111_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000003271 118.0
LYD2_k127_281239_0 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 373.0
LYD2_k127_281239_1 inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 298.0
LYD2_k127_281239_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001147 282.0
LYD2_k127_281239_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.0000000000000000000000000000000000000000000000000000005179 203.0
LYD2_k127_281239_4 Sporulation domain protein - - - 0.0000004364 58.0
LYD2_k127_2835017_0 Protein of unknown function (DUF2867) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 442.0
LYD2_k127_2835017_1 Belongs to the DapA family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006549 366.0
LYD2_k127_2835017_2 Neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 327.0
LYD2_k127_2835017_3 Beta/gamma crystallins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003849 299.0
LYD2_k127_2835017_4 - - - - 0.000000000000000000000000000000000000000007349 160.0
LYD2_k127_2835017_5 Transglycosylase associated protein - - - 0.0000000000000000000000006594 110.0
LYD2_k127_2852157_0 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 462.0
LYD2_k127_2852157_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000929 362.0
LYD2_k127_2852157_2 epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 315.0
LYD2_k127_2852157_3 glycosylase K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000005713 188.0
LYD2_k127_2864906_0 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 404.0
LYD2_k127_2864906_1 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000192 272.0
LYD2_k127_2864906_2 Peptidoglycan-binding LysM - - - 0.000000000000002342 79.0
LYD2_k127_2878196_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.07e-199 630.0
LYD2_k127_2878196_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 306.0
LYD2_k127_2878196_2 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007394 254.0
LYD2_k127_2878196_3 PFAM 20S proteasome, A and B subunits K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000001407 256.0
LYD2_k127_2878196_4 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000002911 240.0
LYD2_k127_2878196_5 transcriptional regulator K07734 - - 0.00000000000000000000000000000000000000000000282 182.0
LYD2_k127_2878196_6 B12 binding domain K22491 - - 0.0000000000000000000000000000000000000000002474 170.0
LYD2_k127_2878196_7 Belongs to the HSP15 family K04762 - - 0.000000000000000000000001261 111.0
LYD2_k127_2926322_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 456.0
LYD2_k127_2926322_1 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000004414 226.0
LYD2_k127_2926322_2 Aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000005019 126.0
LYD2_k127_2926322_3 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000005932 118.0
LYD2_k127_2926322_4 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000009179 124.0
LYD2_k127_295199_0 Urease alpha-subunit, N-terminal domain K01428 - 3.5.1.5 7.969e-313 970.0
LYD2_k127_295199_1 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002821 282.0
LYD2_k127_295199_2 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006539 274.0
LYD2_k127_295199_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000006707 269.0
LYD2_k127_295199_4 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000000001115 175.0
LYD2_k127_295199_5 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000000000378 175.0
LYD2_k127_2961777_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 466.0
LYD2_k127_2961777_1 response regulator K07684 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001376 274.0
LYD2_k127_2961777_2 Histidine kinase K07673 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000013 267.0
LYD2_k127_2961777_3 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.00000000000000000000000000000000000000004227 154.0
LYD2_k127_2987133_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008824 282.0
LYD2_k127_2987133_1 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000000007503 226.0
LYD2_k127_2987133_2 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 0.00000001594 59.0
LYD2_k127_29983_0 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.0 1033.0
LYD2_k127_29983_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.291e-296 929.0
LYD2_k127_29983_10 Protein conserved in bacteria K09984 - - 0.0000000000000000000000000000000000000000000000000007056 184.0
LYD2_k127_29983_11 Sulfur oxidation protein SoxY K17226 - - 0.000000000000000000000000000000000000000000000000003018 186.0
LYD2_k127_29983_12 Glycosyltransferase like family - - - 0.0000000000000000000000000000000000000000000000103 195.0
LYD2_k127_29983_13 oxidation protein K17227 - - 0.000000000000000000000000000000000000000000009719 166.0
LYD2_k127_29983_14 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000000001904 125.0
LYD2_k127_29983_15 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000004887 113.0
LYD2_k127_29983_16 FR47-like protein - - - 0.000000000000000000321 93.0
LYD2_k127_29983_2 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 2.136e-282 888.0
LYD2_k127_29983_3 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004159 562.0
LYD2_k127_29983_4 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004272 378.0
LYD2_k127_29983_5 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 375.0
LYD2_k127_29983_6 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 366.0
LYD2_k127_29983_7 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 349.0
LYD2_k127_29983_8 ABC-type nitrate sulfonate bicarbonate transport K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000219 249.0
LYD2_k127_29983_9 Cytochrome c K17223 - - 0.00000000000000000000000000000000000000000000000000000000000002152 237.0
LYD2_k127_299837_0 CoA-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 556.0
LYD2_k127_299837_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 366.0
LYD2_k127_299837_2 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000001713 193.0
LYD2_k127_3036115_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 480.0
LYD2_k127_3036115_1 methyltransferase - - - 0.00000000000000000000000000000000004778 136.0
LYD2_k127_3036115_2 von Willebrand factor, type A K07114 - - 0.00000000000000000005229 92.0
LYD2_k127_3036115_3 Protein of unknown function (DUF2934) - - - 0.0006535 49.0
LYD2_k127_3044948_0 Heavy-metal-associated domain K01533 - 3.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 625.0
LYD2_k127_3044948_1 Cytochrome oxidase maturation protein cbb3-type - - - 0.0000000000008714 73.0
LYD2_k127_3075945_0 RmlD substrate binding domain K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 537.0
LYD2_k127_3075945_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 404.0
LYD2_k127_3075945_2 Belongs to the UPF0276 family K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 346.0
LYD2_k127_3075945_3 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000005676 218.0
LYD2_k127_3075945_4 - - - - 0.00000000000000000000000000000000003898 140.0
LYD2_k127_3075945_5 Putative DNA-binding domain - - - 0.0000000000000000000000000000000002942 142.0
LYD2_k127_3075945_6 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000000000000000000000002568 129.0
LYD2_k127_3075945_7 - - - - 0.000000000000000003866 85.0
LYD2_k127_3086973_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 614.0
LYD2_k127_3086973_1 TIGRFAM Methylmalonyl-CoA mutase, C-terminal K01849 - 5.4.99.2 0.000001289 51.0
LYD2_k127_31271_0 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009577 349.0
LYD2_k127_31271_1 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly K13643 - - 0.00000000000000000000000000000000000000000000000000000000002454 212.0
LYD2_k127_31271_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000007589 147.0
LYD2_k127_31271_3 - - - - 0.0000000000000000203 88.0
LYD2_k127_31271_4 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000003473 63.0
LYD2_k127_3181341_0 Aldo/keto reductase family K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 428.0
LYD2_k127_3181341_1 PFAM 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 400.0
LYD2_k127_3181341_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 385.0
LYD2_k127_3181341_3 ABC transporter K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004346 339.0
LYD2_k127_3181341_4 amino acid ABC transporter K02029,K10009 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 287.0
LYD2_k127_3181341_5 Bacterial periplasmic substrate-binding proteins K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001168 294.0
LYD2_k127_3181341_6 Thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000006614 233.0
LYD2_k127_3181341_7 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000000000004175 216.0
LYD2_k127_3181341_8 Xylose isomerase - - - 0.0000000000000000000000000000000000003364 142.0
LYD2_k127_3182147_0 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 408.0
LYD2_k127_3182147_1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 316.0
LYD2_k127_3182147_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000001611 213.0
LYD2_k127_3182147_3 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000000000000000000000000000000000000000000000000000001738 219.0
LYD2_k127_3182147_4 carboxylase K01965,K01968 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.3,6.4.1.4 0.000000000000000000000000000000003233 132.0
LYD2_k127_3182147_5 Protein of unknown function (DUF1289) K06938 - - 0.0000000005075 71.0
LYD2_k127_3183218_0 amino acid K11959 - - 2.895e-236 737.0
LYD2_k127_3183218_1 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 351.0
LYD2_k127_3183218_2 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000000000000001912 215.0
LYD2_k127_3183218_3 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.0000000000000000000000000000000000000000000000002916 181.0
LYD2_k127_3183218_4 LysR substrate binding domain - - - 0.00000000001551 68.0
LYD2_k127_3183218_5 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000002904 60.0
LYD2_k127_3184054_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 539.0
LYD2_k127_3184054_1 Chain length determinant protein - - - 0.000000000000000000000001402 119.0
LYD2_k127_3184054_2 BadF/BadG/BcrA/BcrD ATPase family - - - 0.0000000002902 61.0
LYD2_k127_3184608_0 COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003174 397.0
LYD2_k127_3184608_1 SURF1 family - - - 0.000000000000008844 79.0
LYD2_k127_3184608_2 Protein of unknown function (DUF2909) - - - 0.00000001377 63.0
LYD2_k127_3190163_0 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 1.136e-225 708.0
LYD2_k127_3190163_1 mandelate racemase muconate lactonizing K01706 - 4.2.1.40 1.981e-201 634.0
LYD2_k127_3190163_10 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K01685,K16846 - 4.2.1.7,4.4.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004377 271.0
LYD2_k127_3190163_11 Regulatory protein GntR HTH - - - 0.000000000000000000000000000000000000000000000000000000000000000000001267 245.0
LYD2_k127_3190163_12 Tripartite ATP-independent periplasmic transporter - - - 0.000000000000000000000000000000000000000000000000000000000000003353 224.0
LYD2_k127_3190163_2 mandelate racemase muconate lactonizing K20023 - 4.2.1.156,4.2.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 551.0
LYD2_k127_3190163_3 PFAM L-carnitine dehydratase bile acid-inducible protein F K01796 - 5.1.99.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 501.0
LYD2_k127_3190163_4 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 494.0
LYD2_k127_3190163_5 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 433.0
LYD2_k127_3190163_6 Alcohol dehydrogenase GroES-like domain K00098 - 1.1.1.264 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 432.0
LYD2_k127_3190163_7 Aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006235 400.0
LYD2_k127_3190163_8 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 391.0
LYD2_k127_3190163_9 PFAM Short-chain dehydrogenase reductase SDR K18335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006032 323.0
LYD2_k127_3190917_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 1.257e-235 739.0
LYD2_k127_3190917_1 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000251 213.0
LYD2_k127_3191632_0 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 1.371e-199 627.0
LYD2_k127_3191632_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002764 533.0
LYD2_k127_3191632_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. K01120 - 3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006969 312.0
LYD2_k127_3191632_3 Uncharacterized protein conserved in bacteria (DUF2237) - - - 0.0000000000000000000000000000000000000000000000000001026 188.0
LYD2_k127_3195715_0 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 432.0
LYD2_k127_3195715_1 Aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 427.0
LYD2_k127_3195715_2 Glycosyl transferase family 41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008345 408.0
LYD2_k127_3195715_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000008523 229.0
LYD2_k127_3195715_4 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000000000000000000152 203.0
LYD2_k127_3195715_5 Rubredoxin - - - 0.000000000000000000000000002041 113.0
LYD2_k127_3195715_6 Glycosyl transferases group 1 - - - 0.0000000000000000006428 99.0
LYD2_k127_3195715_7 SCO1/SenC K07152 - - 0.000000000000005192 75.0
LYD2_k127_3196997_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004443 473.0
LYD2_k127_3196997_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000002896 163.0
LYD2_k127_3197870_0 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs - - - 2.811e-209 673.0
LYD2_k127_3197870_1 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS - - - 0.0000000000000000000000000000000000000000000000000000000005217 209.0
LYD2_k127_3198679_0 III protein, CoA-transferase family - - - 5.631e-206 646.0
LYD2_k127_3198679_1 III protein, CoA-transferase family - - - 1.256e-200 632.0
LYD2_k127_3198679_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007754 479.0
LYD2_k127_3198679_3 Oxidoreductase family, NAD-binding Rossmann fold K19181 - 1.1.1.292 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 423.0
LYD2_k127_3198679_4 Enoyl-CoA hydratase/isomerase K08299 - 4.2.1.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 353.0
LYD2_k127_3198679_5 Enoyl-(Acyl carrier protein) reductase K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 323.0
LYD2_k127_3198679_6 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 286.0
LYD2_k127_3198679_7 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001836 255.0
LYD2_k127_3198679_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000009799 86.0
LYD2_k127_3199485_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005663 476.0
LYD2_k127_3199485_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 306.0
LYD2_k127_3199485_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007161 283.0
LYD2_k127_3199485_3 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000000000002752 236.0
LYD2_k127_3199485_4 SmpA / OmlA family K06186 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0030674,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042221,GO:0042802,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045203,GO:0045229,GO:0046677,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0060090,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.000000000000000000000002396 109.0
LYD2_k127_3206446_0 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 371.0
LYD2_k127_3206446_1 Belongs to the long-chain O-acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000004577 229.0
LYD2_k127_3206446_2 cobalamin-transporting ATPase activity - - - 0.0000000000000000000000000000000000000000000134 177.0
LYD2_k127_3206980_0 Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA K00219,K09461 - 1.14.13.40,1.3.1.34 0.0 1117.0
LYD2_k127_3206980_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 432.0
LYD2_k127_3206980_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 392.0
LYD2_k127_3206980_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000000000001039 198.0
LYD2_k127_3206980_4 Type II transport protein GspH K08084 - - 0.0000000000000000001784 96.0
LYD2_k127_3218595_0 Glycosyl transferase K20444 - - 9.572e-202 668.0
LYD2_k127_3218595_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000913 418.0
LYD2_k127_3218595_2 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004643 326.0
LYD2_k127_3218595_3 glycosyl transferase family 2 K20444 - - 0.0000000000000000000000000000000000000000000000000000839 194.0
LYD2_k127_3218595_4 Belongs to the enoyl-CoA hydratase isomerase family K19640 - - 0.000000000000000000000000000001422 123.0
LYD2_k127_3218595_5 ThiS family K03154 - - 0.00000000000000003644 83.0
LYD2_k127_3218595_6 PFAM cytochrome c, class I K08738 - - 0.00000000000003338 76.0
LYD2_k127_3218595_7 PFAM cytochrome c, class I K08738 - - 0.0000000000001543 76.0
LYD2_k127_3218595_8 - - - - 0.000000002593 68.0
LYD2_k127_3226026_0 uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004195 278.0
LYD2_k127_3226026_1 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000000000000006929 185.0
LYD2_k127_3226026_2 Beta/gamma crystallins - - - 0.000000000000000000000000000000000000007254 153.0
LYD2_k127_3226026_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000002224 77.0
LYD2_k127_3229544_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 7.702e-220 699.0
LYD2_k127_3229544_1 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000001576 184.0
LYD2_k127_3230465_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 1.342e-237 738.0
LYD2_k127_3230465_1 aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 412.0
LYD2_k127_3230465_2 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 311.0
LYD2_k127_3230465_3 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.2 0.0000000000000000000000000000001263 142.0
LYD2_k127_3242215_0 Malic enzyme K00029 - 1.1.1.40 7.314e-227 711.0
LYD2_k127_3242215_1 PFAM alanine racemase domain protein K19967 - 4.1.2.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 458.0
LYD2_k127_3242215_2 Luciferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 427.0
LYD2_k127_3242215_3 Belongs to the arginase family K01480,K18459 - 3.5.3.11,3.5.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 339.0
LYD2_k127_3242215_4 Nitrous oxide-stimulated promoter - - - 0.000000000000000000000000000000000004735 141.0
LYD2_k127_3248827_0 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 362.0
LYD2_k127_3248827_1 Protein of unknown function (DUF1631) - - - 0.0000000000000000000000000000007585 141.0
LYD2_k127_3251845_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 7.045e-226 722.0
LYD2_k127_3251845_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 576.0
LYD2_k127_3251845_2 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000003859 176.0
LYD2_k127_3251845_3 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000001698 81.0
LYD2_k127_3259357_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006653 582.0
LYD2_k127_3259357_1 Belongs to the peptidase S1C family K04691,K04772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 430.0
LYD2_k127_3259357_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000005854 107.0
LYD2_k127_3259357_11 - - - - 0.0000000000000000000002293 103.0
LYD2_k127_3259357_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005852 368.0
LYD2_k127_3259357_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005735 309.0
LYD2_k127_3259357_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 310.0
LYD2_k127_3259357_5 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000126 198.0
LYD2_k127_3259357_6 Nucleotide transport and metabolism Carbohydrate transport and metabolism General function prediction only K02503 - - 0.0000000000000000000000000000000000000000000000003141 178.0
LYD2_k127_3259357_7 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000000000000000000000001797 146.0
LYD2_k127_3259357_8 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000002722 127.0
LYD2_k127_3259357_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000000002931 119.0
LYD2_k127_3262522_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 494.0
LYD2_k127_3262522_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 487.0
LYD2_k127_3262522_2 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030001,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0051179,GO:0051234,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000001151 238.0
LYD2_k127_3262522_3 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000002576 220.0
LYD2_k127_3263300_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004537 545.0
LYD2_k127_3263300_1 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005973 308.0
LYD2_k127_3263300_2 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0000000000000000000000000000000006203 130.0
LYD2_k127_327131_0 Dihydrodipicolinate synthetase family K01714,K13876 - 4.2.1.43,4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 478.0
LYD2_k127_327131_1 Protein of unknown function (DUF2868) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 402.0
LYD2_k127_3273214_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K18356 - 1.2.1.58 7.813e-214 688.0
LYD2_k127_3273214_1 indolepyruvate ferredoxin oxidoreductase K04090 - 1.2.7.8 5.548e-206 656.0
LYD2_k127_3273214_10 4Fe-4S binding domain K18358 - 1.2.1.58 0.0000000000000000000000000000000000000000000006868 173.0
LYD2_k127_3273214_11 DoxX-like family - - - 0.0000000000000000000000000000000008703 135.0
LYD2_k127_3273214_12 major facilitator superfamily - - - 0.000000000000000000000000000000002944 133.0
LYD2_k127_3273214_2 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K18355 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 601.0
LYD2_k127_3273214_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 565.0
LYD2_k127_3273214_4 Pyridine nucleotide-disulphide oxidoreductase K18359 - 1.2.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 457.0
LYD2_k127_3273214_5 Protein of unknown function (DUF1415) K09941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005755 289.0
LYD2_k127_3273214_6 PFAM Class II Aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001869 271.0
LYD2_k127_3273214_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K18357 - 1.2.1.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003173 271.0
LYD2_k127_3273214_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004485 278.0
LYD2_k127_3273214_9 Phospholipid N-methyltransferase - - - 0.000000000000000000000000000000000000000000000003359 183.0
LYD2_k127_3277912_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.413e-263 831.0
LYD2_k127_3277912_1 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004357 443.0
LYD2_k127_3277912_2 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 419.0
LYD2_k127_3277912_3 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 332.0
LYD2_k127_3277912_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000035 262.0
LYD2_k127_3277912_5 phosphohistidine phosphatase K08296 - - 0.0000000000000000000000000000000000000000000000000009718 189.0
LYD2_k127_3277912_6 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000000000000000000006734 129.0
LYD2_k127_3288762_0 Transketolase, C-terminal domain K00167 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 532.0
LYD2_k127_3288762_1 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component and related enzymes K09699 - 2.3.1.168 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 451.0
LYD2_k127_3292385_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 364.0
LYD2_k127_3292385_1 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 325.0
LYD2_k127_3292385_2 - - - - 0.00000000000003014 85.0
LYD2_k127_3294332_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 5.096e-221 702.0
LYD2_k127_3294332_1 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 310.0
LYD2_k127_3294332_2 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.000000000000000000000000000000000000006333 160.0
LYD2_k127_3296669_0 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 1.606e-217 682.0
LYD2_k127_3296669_1 PrpF protein K16514 - 5.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 454.0
LYD2_k127_3296669_2 GlcNAc-PI de-N-acetylase K16515 - 4.2.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 384.0
LYD2_k127_3296669_3 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397 390.0
LYD2_k127_3296669_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 288.0
LYD2_k127_3296669_5 Aldolase/RraA K02553,K10218 - 4.1.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 299.0
LYD2_k127_3296669_6 Dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 290.0
LYD2_k127_3296669_7 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000704 65.0
LYD2_k127_3300676_0 PFAM membrane bound O-acyl transferase MBOAT K19294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 322.0
LYD2_k127_3300676_1 SGNH hydrolase-like domain, acetyltransferase AlgX - - - 0.00000000000000000000000000000000000000001045 168.0
LYD2_k127_3302404_0 Male sterility protein K22025 - 1.1.1.410 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 388.0
LYD2_k127_3302404_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000001587 159.0
LYD2_k127_3302404_2 ABC-type cobalamin Fe3 -siderophore transport system, ATPase component K02013 - 3.6.3.34 0.000000000000000004418 86.0
LYD2_k127_3304169_0 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 4.28e-314 979.0
LYD2_k127_3304169_1 Belongs to the thiolase family K00626 - 2.3.1.9 1.394e-196 619.0
LYD2_k127_3304169_2 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006888 521.0
LYD2_k127_3304169_3 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 419.0
LYD2_k127_3304169_4 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.0000000000000000000000000000000000000000000000000000000000000000000000006511 254.0
LYD2_k127_3304169_5 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000001711 227.0
LYD2_k127_3304169_6 TIGRFAM phasin family protein - - - 0.00000000000000001164 89.0
LYD2_k127_3305074_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005147 286.0
LYD2_k127_3305074_1 Belongs to the LDH2 MDH2 oxidoreductase family K00016 - 1.1.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000007656 263.0
LYD2_k127_3305074_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000003966 128.0
LYD2_k127_3305074_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000002294 73.0
LYD2_k127_3305845_0 Type II/IV secretion system protein K02454 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 495.0
LYD2_k127_3305845_1 secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 421.0
LYD2_k127_3324500_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 1.246e-272 852.0
LYD2_k127_3324500_1 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000000308 191.0
LYD2_k127_3324500_2 Ferredoxin, 2Fe-2S type, ISC system K04755 - - 0.0000000000000000000000000000000000000000000000000058 182.0
LYD2_k127_3324500_3 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000007143 155.0
LYD2_k127_3324500_4 Iron-sulphur cluster assembly - - - 0.00000000000000000000000002195 109.0
LYD2_k127_3324500_5 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000004115 67.0
LYD2_k127_3324500_6 TIGRFAM Phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.00000000001025 65.0
LYD2_k127_3326395_0 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 537.0
LYD2_k127_3326395_1 UbiA prenyltransferase family K02548 - 2.5.1.74 0.0000000000000000000000000000000005835 138.0
LYD2_k127_3327467_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 481.0
LYD2_k127_3327467_1 Trap dicarboxylate transporter, dctm subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 423.0
LYD2_k127_3327467_2 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 383.0
LYD2_k127_3327467_3 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000009334 188.0
LYD2_k127_3327467_4 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.00000000000000000000000000000000000000000006691 165.0
LYD2_k127_3332198_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 3.345e-206 650.0
LYD2_k127_3332198_1 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 366.0
LYD2_k127_3332198_2 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 349.0
LYD2_k127_3332198_3 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 339.0
LYD2_k127_3332198_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006223 316.0
LYD2_k127_3332198_5 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000000004215 256.0
LYD2_k127_3332198_6 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000004682 241.0
LYD2_k127_3332198_7 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000004861 171.0
LYD2_k127_3333420_0 DNA topoisomerase III K03169 - 5.99.1.2 0.0 1168.0
LYD2_k127_3333420_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 340.0
LYD2_k127_3333420_2 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 349.0
LYD2_k127_3333420_3 LysM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 295.0
LYD2_k127_3333420_4 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001341 282.0
LYD2_k127_3333420_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000001455 233.0
LYD2_k127_3334355_0 Cys/Met metabolism PLP-dependent enzyme K01739,K01740 - 2.5.1.48,2.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005964 565.0
LYD2_k127_3334355_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000009739 254.0
LYD2_k127_3334355_2 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000000132 238.0
LYD2_k127_3334355_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000004558 213.0
LYD2_k127_3334355_4 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000016 207.0
LYD2_k127_3338405_0 SMART Tetratricopeptide domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 430.0
LYD2_k127_3338405_1 Transcription factor zinc-finger - - - 0.00000000000000000000000000000005607 134.0
LYD2_k127_3338405_2 YceI-like domain - - - 0.000000000000003757 88.0
LYD2_k127_3348456_0 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848,K20906 - 5.4.99.2,5.4.99.64 1.195e-289 897.0
LYD2_k127_3348456_1 ArgK protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 357.0
LYD2_k127_3348456_2 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000009995 187.0
LYD2_k127_3348456_3 Oxidoreductase domain protein - - - 0.00000000000000302 76.0
LYD2_k127_3352616_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 507.0
LYD2_k127_3352616_1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 422.0
LYD2_k127_3352616_2 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 334.0
LYD2_k127_3352616_3 Dioxygenase K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000003704 166.0
LYD2_k127_3352616_4 OmpA family - - - 0.0000000000000000000009691 96.0
LYD2_k127_3352616_5 STAS domain K06378 - - 0.0000000000000000301 87.0
LYD2_k127_3352616_6 OmpA family - - - 0.00006446 47.0
LYD2_k127_3359044_0 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008172 536.0
LYD2_k127_3359044_1 DNA replication, recombination and repair K01247 - 3.2.2.21 0.000000000000000000000000003612 111.0
LYD2_k127_3359044_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000003869 78.0
LYD2_k127_3375789_0 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006633 484.0
LYD2_k127_3375789_1 AMP-binding enzyme C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533 336.0
LYD2_k127_3375789_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000001176 194.0
LYD2_k127_337741_0 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 483.0
LYD2_k127_337741_1 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000000002683 245.0
LYD2_k127_337741_2 Gram-negative porin - - - 0.0000000000000000000000000000000000000000001216 175.0
LYD2_k127_337741_3 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000009324 87.0
LYD2_k127_3381341_0 Alanine racemase K20757 - 4.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 392.0
LYD2_k127_3381341_1 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006802 344.0
LYD2_k127_3381341_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 319.0
LYD2_k127_3381341_3 MlrC C-terminus - - - 0.000000000000000000000000000000002061 130.0
LYD2_k127_3382928_0 protein synthesis factor, GTP-binding K06207 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 561.0
LYD2_k127_3382928_1 DNA recombination protein RmuC K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000795 458.0
LYD2_k127_3385961_0 Cytochrome b(N-terminal)/b6/petB - - - 4.586e-238 755.0
LYD2_k127_3385961_1 Anaerobic ribonucleoside-triphosphate reductase - - - 1.207e-218 681.0
LYD2_k127_3385961_10 Anaerobic ribonucleoside-triphosphate reductase - - - 0.00000000000000000000003683 103.0
LYD2_k127_3385961_11 Cytochrome oxidase assembly protein K02259 - - 0.00000000000000000005406 102.0
LYD2_k127_3385961_2 Peptidase U32 K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 499.0
LYD2_k127_3385961_3 Cytochrome C and Quinol oxidase polypeptide I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004649 501.0
LYD2_k127_3385961_4 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004658 440.0
LYD2_k127_3385961_5 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 375.0
LYD2_k127_3385961_6 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003416 253.0
LYD2_k127_3385961_7 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000002371 241.0
LYD2_k127_3385961_8 - - - - 0.0000000000000000000000000000000086 135.0
LYD2_k127_3385961_9 SCP-2 sterol transfer family - - - 0.00000000000000000000001878 106.0
LYD2_k127_3404800_0 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 464.0
LYD2_k127_3404800_1 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 362.0
LYD2_k127_3404800_2 - - - - 0.000000000000000141 83.0
LYD2_k127_3404800_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000002929 58.0
LYD2_k127_3407883_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 3.472e-196 620.0
LYD2_k127_3407883_1 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 590.0
LYD2_k127_3407883_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 308.0
LYD2_k127_3407883_3 Protein of unknown function (DUF1223) - - - 0.00000000000000000006758 93.0
LYD2_k127_3407883_4 Transglycosylase associated protein - - - 0.00000001476 57.0
LYD2_k127_3417788_0 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 399.0
LYD2_k127_3417788_1 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000000005218 181.0
LYD2_k127_3417788_2 thioesterase K01075 - 3.1.2.23 0.000000000000000000000000005705 124.0
LYD2_k127_3435928_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 404.0
LYD2_k127_3435928_1 PFAM Glycosyl transferase family 2 K10012,K20534 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 395.0
LYD2_k127_3435928_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000441 282.0
LYD2_k127_3435928_3 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002661 281.0
LYD2_k127_3435928_4 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001352 247.0
LYD2_k127_3435928_5 TraB family K09973 - - 0.0000000000000000000000000000000000000000009078 177.0
LYD2_k127_3435928_6 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000000000000001549 160.0
LYD2_k127_3435928_7 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000008576 126.0
LYD2_k127_3435928_8 Major Facilitator Superfamily - - - 0.00000004144 59.0
LYD2_k127_3435928_9 Belongs to the GST superfamily K11209 - - 0.0000003182 60.0
LYD2_k127_3440813_0 ABC-type Fe3 transport system, periplasmic K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008375 269.0
LYD2_k127_3440813_1 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.000000000000000000000000000000000000000000000000000000001292 207.0
LYD2_k127_3440813_2 radical SAM domain protein K06871 - - 0.0000000000000000000000000000000000007499 147.0
LYD2_k127_3440813_3 Belongs to the hyi family K22131 - 5.3.1.35 0.0000003075 52.0
LYD2_k127_3441230_0 Alpha-amylase domain K01187 - 3.2.1.20 0.0 1494.0
LYD2_k127_3441230_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 1.205e-310 962.0
LYD2_k127_3441230_10 - - - - 0.00000000006317 70.0
LYD2_k127_3441230_2 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 3.117e-295 919.0
LYD2_k127_3441230_3 PFAM Protein kinase K11912,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 517.0
LYD2_k127_3441230_4 Alkaline and neutral invertase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 424.0
LYD2_k127_3441230_5 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 294.0
LYD2_k127_3441230_6 PFAM Conserved TM helix repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003346 248.0
LYD2_k127_3441230_7 - - - - 0.00000000000000000000000000000000000007917 149.0
LYD2_k127_3441230_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000001137 145.0
LYD2_k127_3441230_9 Cytochrome c3 - - - 0.000000000000000000000000000000002584 132.0
LYD2_k127_3446339_0 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007442 460.0
LYD2_k127_3446339_1 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 380.0
LYD2_k127_3446339_2 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 370.0
LYD2_k127_3446339_3 Carboxylesterase K06999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004794 262.0
LYD2_k127_3446339_4 TonB-dependent receptor - - - 0.000001178 61.0
LYD2_k127_3456448_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004469 597.0
LYD2_k127_3456448_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 380.0
LYD2_k127_3456448_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000007037 212.0
LYD2_k127_3456448_3 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.0000000000000000000000000000000000000000000000008451 190.0
LYD2_k127_3456448_4 Transcriptional regulator K15539 - - 0.00000000000000000000000000000000005721 151.0
LYD2_k127_346030_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 516.0
LYD2_k127_346030_1 Arsenical pump membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 408.0
LYD2_k127_346030_2 Membrane transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 360.0
LYD2_k127_346030_3 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 331.0
LYD2_k127_346030_4 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003587 324.0
LYD2_k127_346030_5 Belongs to the HpcH HpaI aldolase family K02510,K12660 - 4.1.2.52,4.1.2.53 0.0000000000000000000000000000000000000000000000000000000000000000001152 242.0
LYD2_k127_346030_6 Nuclear protein SET K07117 - - 0.0000000000000000000000000000000000000000001749 178.0
LYD2_k127_346030_7 PFAM CBS domain containing protein - - - 0.0003026 49.0
LYD2_k127_3514030_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.77e-270 841.0
LYD2_k127_3514030_1 Periplasmic protein thiol disulfide oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007293 252.0
LYD2_k127_3514030_2 subunit of a heme lyase K02200 - - 0.00001391 55.0
LYD2_k127_351465_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.506e-249 793.0
LYD2_k127_351465_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 572.0
LYD2_k127_351465_2 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 407.0
LYD2_k127_351465_3 NADPH-dependent FMN reductase K19784 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006091 253.0
LYD2_k127_351465_4 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000000000000000000000003901 130.0
LYD2_k127_351465_5 Heavy metal transport detoxification protein K07213 - - 0.00000000000009275 83.0
LYD2_k127_351465_6 - - - - 0.0006003 48.0
LYD2_k127_3537320_0 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 325.0
LYD2_k127_3537320_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000004054 159.0
LYD2_k127_3579484_0 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 579.0
LYD2_k127_3579484_1 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 488.0
LYD2_k127_3579484_2 phenylacetic acid K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 352.0
LYD2_k127_3579484_3 PaaX family K02616 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000989 280.0
LYD2_k127_3579484_4 Iron-sulfur cluster assembly protein K02612 - - 0.00000000000000000000000000000000000000000000000000000002923 205.0
LYD2_k127_3579484_5 Phenylacetic acid degradation B K02610 - - 0.0000000000000000000000000000000000000000000002133 184.0
LYD2_k127_3579484_6 Oxidoreductase FAD-binding domain K02613 - - 0.00000000000000000000000000000000002883 139.0
LYD2_k127_35947_0 provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 443.0
LYD2_k127_35947_1 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 314.0
LYD2_k127_35947_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000001171 210.0
LYD2_k127_3608968_0 Cation transport ATPase (P-type) K01537 - 3.6.3.8 2.894e-197 629.0
LYD2_k127_3633943_0 glycolate oxidase subunit GlcD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 363.0
LYD2_k127_3633943_1 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.0000000000000000001437 98.0
LYD2_k127_3633943_2 - - - - 0.00000000001174 71.0
LYD2_k127_3634128_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 3.136e-205 651.0
LYD2_k127_3634128_1 Psort location Cytoplasmic, score 8.96 K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007108 286.0
LYD2_k127_3634128_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000003151 208.0
LYD2_k127_3634128_3 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000001145 173.0
LYD2_k127_3634128_4 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.00000000000000000000000000000000005071 137.0
LYD2_k127_3634128_5 Bacterial SH3 domain - - - 0.0000000000000000000000000000000005077 141.0
LYD2_k127_3634128_6 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000329 130.0
LYD2_k127_36378_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 295.0
LYD2_k127_36378_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005626 280.0
LYD2_k127_36378_2 NMT1/THI5 like K02051 - - 0.00000000000000000000000000000000000000000000000000000000001171 210.0
LYD2_k127_36378_3 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000005985 204.0
LYD2_k127_371080_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 451.0
LYD2_k127_371080_1 TRAP-type C4-dicarboxylate transport system, small permease component - - - 0.00000000000000000000000000000000000000000000000000005952 196.0
LYD2_k127_371080_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000005384 120.0
LYD2_k127_3766324_0 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 533.0
LYD2_k127_3766324_1 Psort location Cytoplasmic, score 7.50 - - - 0.000000000000000000000000000000000000000001984 163.0
LYD2_k127_377769_0 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000003703 227.0
LYD2_k127_377769_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000009226 130.0
LYD2_k127_377769_2 Ferritin, Dps family protein K03594 - 1.16.3.1 0.00000000000003223 81.0
LYD2_k127_3784067_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005162 323.0
LYD2_k127_3784067_1 Tetratricopeptide repeat K02200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007596 287.0
LYD2_k127_3784067_2 subunit of a heme lyase K02200 - - 0.00000000000000000000000000000000000000000001911 165.0
LYD2_k127_3813255_0 Metallopeptidase family M24 - - - 5.932e-206 657.0
LYD2_k127_3813255_1 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 437.0
LYD2_k127_3813255_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 402.0
LYD2_k127_3813255_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 371.0
LYD2_k127_3813255_4 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 348.0
LYD2_k127_3813255_5 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008566 346.0
LYD2_k127_3813255_6 Uncharacterised protein family (UPF0149) K07039 - - 0.0000000000000000000000000000000000000000000001572 181.0
LYD2_k127_3813255_7 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000003189 133.0
LYD2_k127_3813505_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 344.0
LYD2_k127_3813505_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005231 267.0
LYD2_k127_3813505_2 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000004395 229.0
LYD2_k127_3813505_3 Cell division protein ZapA K09888 - - 0.00000000000000000000183 99.0
LYD2_k127_3818637_0 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069,K11073 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 533.0
LYD2_k127_3818637_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008546 464.0
LYD2_k127_3818637_2 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 418.0
LYD2_k127_3818637_3 Binding-protein-dependent transport system inner membrane component K11070,K11074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 384.0
LYD2_k127_3818637_4 Glycosyl Transferase K02844 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0008653,GO:0008919,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0046401,GO:0046527,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 338.0
LYD2_k127_3818637_5 VanZ like family - - - 0.00000000000000000000000000000000000000000002384 179.0
LYD2_k127_3818637_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000001778 104.0
LYD2_k127_3818883_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 307.0
LYD2_k127_3818883_1 PFAM Amylo-alpha-16-glucosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003064 249.0
LYD2_k127_3821521_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 531.0
LYD2_k127_3821521_1 GTP-binding GTPase Middle Region K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007923 376.0
LYD2_k127_3821521_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 363.0
LYD2_k127_3821521_3 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000298 209.0
LYD2_k127_3821521_4 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000004831 194.0
LYD2_k127_3821521_5 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000003223 139.0
LYD2_k127_3822456_0 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004413,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009088,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 443.0
LYD2_k127_3822456_1 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005269 426.0
LYD2_k127_3822456_2 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 0.000000000000000000000000000001625 121.0
LYD2_k127_3826851_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07789 - - 0.0 1497.0
LYD2_k127_3826851_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788 - - 0.0 1011.0
LYD2_k127_3826851_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 476.0
LYD2_k127_3828908_0 TPM domain K06872 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 337.0
LYD2_k127_3828908_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001186 163.0
LYD2_k127_3828908_2 TPM domain - - - 0.0000000000000000000000000000000002886 143.0
LYD2_k127_3828908_3 PFAM Sporulation domain protein - - - 0.0000000000000617 78.0
LYD2_k127_3829039_0 PFAM transglutaminase domain protein K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006374 457.0
LYD2_k127_3829039_1 RNA polymerase sigma factor K03087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 372.0
LYD2_k127_3829039_2 Lysin motif K06194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004848 275.0
LYD2_k127_3839631_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 558.0
LYD2_k127_3839631_1 Type IV pili methyl-accepting chemotaxis transducer N-term K07673 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 536.0
LYD2_k127_3839631_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 497.0
LYD2_k127_3839631_3 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 298.0
LYD2_k127_3839631_4 TIGRFAM yecA family protein K07039 - - 0.0000000000000000000000000000000004009 142.0
LYD2_k127_3839631_5 Cold-shock DNA-binding domain protein K03704 - - 0.000000000000000000000000000000005419 128.0
LYD2_k127_3839631_6 - - - - 0.00000000000003746 86.0
LYD2_k127_3839631_7 regulator K07684 - - 0.000000004872 65.0
LYD2_k127_3843676_0 Belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 1.721e-226 710.0
LYD2_k127_3843676_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 545.0
LYD2_k127_3843676_2 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000496 332.0
LYD2_k127_3843676_3 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.00000000007469 64.0
LYD2_k127_3848783_0 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003508 275.0
LYD2_k127_3848783_1 PilZ domain K02676 - - 0.0000000000000000000000000000000000000000001329 162.0
LYD2_k127_3848783_2 dna polymerase iii K02341 - 2.7.7.7 0.0000000000000000002549 94.0
LYD2_k127_3853266_0 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 570.0
LYD2_k127_3853266_1 Inhibitor of apoptosis-promoting Bax1 K19416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000189 272.0
LYD2_k127_3853266_2 uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000002359 271.0
LYD2_k127_3853266_3 Glycoprotease family K14742 - - 0.0000000000000000000000000000000000000000000000006162 183.0
LYD2_k127_3853266_4 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.000000000000000000000000000000001185 140.0
LYD2_k127_3853266_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000003454 106.0
LYD2_k127_3853266_6 LemA family K03744 - - 0.000000007852 57.0
LYD2_k127_3858353_0 Subtilase family K14645 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 491.0
LYD2_k127_3858353_1 PFAM thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000004086 191.0
LYD2_k127_3863462_0 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 486.0
LYD2_k127_3863462_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 347.0
LYD2_k127_3863462_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004473 268.0
LYD2_k127_3864143_0 Glucose-6-phosphate dehydrogenase, NAD binding domain K00036 - 1.1.1.363,1.1.1.49 3.9e-239 745.0
LYD2_k127_3864143_1 Belongs to the GPI family K01810 - 5.3.1.9 2.572e-207 647.0
LYD2_k127_3864143_2 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 525.0
LYD2_k127_3864143_3 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000001595 251.0
LYD2_k127_3864143_4 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000001001 156.0
LYD2_k127_3864348_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 6.702e-269 837.0
LYD2_k127_3864348_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000003613 80.0
LYD2_k127_3864348_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.00000004283 54.0
LYD2_k127_3867874_0 abc transporter atp-binding protein K06147 - - 3.172e-299 928.0
LYD2_k127_3867874_1 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 612.0
LYD2_k127_3867874_2 Cache domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006087 528.0
LYD2_k127_3867874_3 Belongs to the class I fructose-bisphosphate aldolase family K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 449.0
LYD2_k127_3867874_4 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 368.0
LYD2_k127_3867874_5 Trypsin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 350.0
LYD2_k127_3867874_6 TIGRFAM TIGR00268 family protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 294.0
LYD2_k127_3867874_7 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006362 260.0
LYD2_k127_3867874_8 PFAM SH3, type 3 - - - 0.0000000000000000000000000004005 126.0
LYD2_k127_3867874_9 Domain of unknown function (DUF2088) - - - 0.00000000000000000000007101 107.0
LYD2_k127_3870765_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009107 534.0
LYD2_k127_3870765_1 Belongs to the arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008571 287.0
LYD2_k127_3870765_2 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000001287 220.0
LYD2_k127_3872962_0 AsmA family K07289,K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000008789 255.0
LYD2_k127_3872962_2 - - - - 0.0005072 51.0
LYD2_k127_3876695_0 Putative modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005984 563.0
LYD2_k127_3876695_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 443.0
LYD2_k127_3876695_2 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001112 281.0
LYD2_k127_3876695_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000131 224.0
LYD2_k127_3876695_4 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000000000001835 136.0
LYD2_k127_3876695_5 - - - - 0.000000000000002095 90.0
LYD2_k127_3878075_0 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005715 280.0
LYD2_k127_3878075_1 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000004131 212.0
LYD2_k127_3878075_2 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 0.0000000000000000000000000000000000001141 150.0
LYD2_k127_3880689_0 DNA replication, recombination, and repair K07478 - - 8.596e-200 630.0
LYD2_k127_3880689_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 476.0
LYD2_k127_3880689_2 cell division protein K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 309.0
LYD2_k127_3880689_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000000000000000000000000000000000000000000003402 226.0
LYD2_k127_3880817_0 zinc protease protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 345.0
LYD2_k127_3880817_1 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000005149 215.0
LYD2_k127_3880817_10 2 iron, 2 sulfur cluster binding K02192 - - 0.00000005566 63.0
LYD2_k127_3880817_2 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000000000000000000000007759 207.0
LYD2_k127_3880817_3 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000000000000000006435 201.0
LYD2_k127_3880817_4 Aminotransferase - - - 0.00000000000000000000000000000000000000000000003781 172.0
LYD2_k127_3880817_5 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000003299 173.0
LYD2_k127_3880817_6 Putative zinc-finger - - - 0.0000000000000000000000000000000000000000052 168.0
LYD2_k127_3880817_7 Ribosomal protein S18 K02963 - - 0.000000000000000000000000000000000007754 138.0
LYD2_k127_3880817_8 cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.0000000000000000008266 88.0
LYD2_k127_3880817_9 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.000000000000000448 84.0
LYD2_k127_3885216_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 548.0
LYD2_k127_3885216_1 Amidohydrolase family K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 482.0
LYD2_k127_3885216_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 307.0
LYD2_k127_3885216_3 Belongs to the BolA IbaG family - - - 0.000000000000000000000000000002724 121.0
LYD2_k127_3885216_4 Amidohydrolase family K01487 - 3.5.4.3 0.00000000001258 67.0
LYD2_k127_3885216_5 Transport permease protein K01992 - - 0.00000002278 55.0
LYD2_k127_3889148_0 tRNA synthetases class I (C) catalytic domain K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005284 488.0
LYD2_k127_3889148_1 Glycosyltransferase, group 2 family protein - - - 0.00000000000000000000000000000000161 145.0
LYD2_k127_3889148_2 Rhodanese Homology Domain - - - 0.0000000000000000000001866 97.0
LYD2_k127_3906606_0 glycolate oxidase iron-sulfur subunit K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 535.0
LYD2_k127_3906606_1 PFAM FAD linked oxidase domain protein K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 392.0
LYD2_k127_3906606_10 Histidine kinase - - - 0.00000000000007962 77.0
LYD2_k127_3906606_11 Heavy-metal resistance - - - 0.0000000000005127 77.0
LYD2_k127_3906606_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007805 331.0
LYD2_k127_3906606_3 Histidine kinase K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001684 294.0
LYD2_k127_3906606_4 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000001805 231.0
LYD2_k127_3906606_5 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000005323 217.0
LYD2_k127_3906606_6 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000008851 213.0
LYD2_k127_3906606_7 PFAM thioesterase superfamily protein K07107 - - 0.00000000000000000000000000000000000000000000000000009411 205.0
LYD2_k127_3906606_8 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000001345 160.0
LYD2_k127_3906606_9 acetyltransferase - - - 0.0000000000000000000000000000000000009182 151.0
LYD2_k127_3908437_0 Tricorn protease homolog K08676 - - 0.0 1083.0
LYD2_k127_3908437_1 Magnesium transport protein CorA - - - 1.619e-223 707.0
LYD2_k127_3908437_10 Malonate decarboxylase, alpha subunit, transporter K01026 - 2.8.3.1 0.0000000008558 61.0
LYD2_k127_3908437_2 Penicillin-Binding Protein C-terminus Family K05367 - 2.4.1.129 2.278e-208 674.0
LYD2_k127_3908437_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 537.0
LYD2_k127_3908437_4 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 424.0
LYD2_k127_3908437_5 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000000000000000000000000000000000000000006812 211.0
LYD2_k127_3908437_6 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000001221 168.0
LYD2_k127_3908437_7 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.000000000000000000000000000000008065 136.0
LYD2_k127_3908437_8 extracellular alpha-helical protein K06894 - - 0.0000000000000000000000002819 105.0
LYD2_k127_3908437_9 Dodecin K09165 - - 0.00000000000000000000004184 108.0
LYD2_k127_3911690_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 7.714e-203 643.0
LYD2_k127_3911690_1 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007512 590.0
LYD2_k127_3911690_2 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 531.0
LYD2_k127_3911690_3 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007978 460.0
LYD2_k127_3911690_4 PFAM alpha beta hydrolase K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 364.0
LYD2_k127_3911690_5 CYTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004809 260.0
LYD2_k127_393888_0 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 601.0
LYD2_k127_393888_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000003192 209.0
LYD2_k127_3941276_0 CobQ/CobB/MinD/ParA nucleotide binding domain K08252,K16692 - 2.7.10.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008307 405.0
LYD2_k127_3941276_1 Bacterial sugar transferase K03606 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 407.0
LYD2_k127_3941276_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009165 344.0
LYD2_k127_3941276_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000004379 249.0
LYD2_k127_3941276_4 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K03215,K06969,K14292 - 2.1.1.190,2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000002453 235.0
LYD2_k127_3941276_5 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000000000000000000000004117 195.0
LYD2_k127_3941276_6 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000002407 200.0
LYD2_k127_3941276_7 - - - - 0.000000000000000000000000000000000000000000002115 188.0
LYD2_k127_3941276_8 - - - - 0.000000000000000000000002763 116.0
LYD2_k127_3941276_9 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006457,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0034613,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042802,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.00002609 49.0
LYD2_k127_3945391_0 dehydrogenase reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006708 245.0
LYD2_k127_3945391_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007,K21787 - 2.7.9.2 0.0000000000000000000000003363 104.0
LYD2_k127_3956009_0 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 4.966e-302 931.0
LYD2_k127_3956009_1 Beta/gamma crystallins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 368.0
LYD2_k127_3956009_2 PGAP1-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 298.0
LYD2_k127_3968490_0 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 350.0
LYD2_k127_3968490_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 348.0
LYD2_k127_3968490_2 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000001471 190.0
LYD2_k127_3972296_0 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 442.0
LYD2_k127_3972296_1 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 396.0
LYD2_k127_3972296_2 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 310.0
LYD2_k127_3972296_3 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000001497 237.0
LYD2_k127_3973010_0 Cys/Met metabolism PLP-dependent enzyme K01760 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 468.0
LYD2_k127_3973010_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000001859 219.0
LYD2_k127_3973010_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000005717 221.0
LYD2_k127_3973010_3 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000001489 177.0
LYD2_k127_3973010_4 PFAM ABC transporter K01995 - - 0.000000000000000000000000000005807 120.0
LYD2_k127_3974509_0 AMP-binding enzyme C-terminal domain K18661 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005431 582.0
LYD2_k127_3974509_1 Transcriptional regulator K21703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000099 455.0
LYD2_k127_3974509_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007154 434.0
LYD2_k127_3974509_3 Aminoacyl-tRNA editing domain K19055 - - 0.00000000000000000000000000000000000000000000000000000000001897 211.0
LYD2_k127_3974509_4 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000000000000000000000000002738 203.0
LYD2_k127_3974509_5 Metallo-beta-lactamase superfamily - - - 0.0000000001668 66.0
LYD2_k127_3977281_0 AcyL-CoA dehydrogenase K06445 - - 0.0 1011.0
LYD2_k127_3977281_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 1.478e-250 783.0
LYD2_k127_3977281_2 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 4.772e-250 794.0
LYD2_k127_3977281_3 Belongs to the thiolase family K00626 - 2.3.1.9 3.835e-218 683.0
LYD2_k127_3977281_4 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000001832 207.0
LYD2_k127_3977281_5 Thioesterase superfamily protein K10806 - - 0.00000000000000000000000000000000000000000000000496 178.0
LYD2_k127_3992236_0 3-carboxy-cis,cis-muconate cycloisomerase K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006028 474.0
LYD2_k127_3992236_1 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004193 454.0
LYD2_k127_3992236_10 Poly(R)-hydroxyalkanoic acid synthase subunit - - - 0.00001074 57.0
LYD2_k127_3992236_2 TIGRFAM poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 435.0
LYD2_k127_3992236_3 protocatechuate 3,4-dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 407.0
LYD2_k127_3992236_4 protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 346.0
LYD2_k127_3992236_5 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006335 296.0
LYD2_k127_3992236_6 Short-chain dehydrogenase reductase (SDR) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 302.0
LYD2_k127_3992236_7 4-carboxymuconolactone decarboxylase K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000001001 194.0
LYD2_k127_3992236_8 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000003355 175.0
LYD2_k127_3992236_9 - - - - 0.00000005624 61.0
LYD2_k127_3994729_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003988 258.0
LYD2_k127_3994729_1 COG0500 SAM-dependent methyltransferases - - - 0.000000000000000000000000001929 123.0
LYD2_k127_3996801_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 302.0
LYD2_k127_3996801_1 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000003701 183.0
LYD2_k127_3996801_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000001817 156.0
LYD2_k127_3996801_3 conserved protein (COG2071) K09166 - - 0.0000000000000000000000000006365 123.0
LYD2_k127_3998668_0 4Fe-4S ferredoxin, iron-sulfur binding K18929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 408.0
LYD2_k127_3998668_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 379.0
LYD2_k127_3998668_2 LUD domain K00782 - - 0.0000000000000000000000000000000000000000000000000000000000000001409 229.0
LYD2_k127_4000053_0 Dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 408.0
LYD2_k127_4000053_1 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009345 306.0
LYD2_k127_4000053_2 Methylmalonyl-CoA mutase K01848 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.4.99.2 0.0000000000000000000000000000000000000000000000004057 180.0
LYD2_k127_4001963_0 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004976 516.0
LYD2_k127_4001963_1 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 427.0
LYD2_k127_4001963_2 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005536 409.0
LYD2_k127_4001963_3 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00020 - 1.1.1.31 0.0000000000000003914 79.0
LYD2_k127_4009555_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K18005 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 2.954e-243 769.0
LYD2_k127_4009555_1 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002344 263.0
LYD2_k127_4009555_2 4Fe-4S single cluster domain K18006 - 1.12.1.2 0.000000000000000000000000000000000000000000000000000000001595 208.0
LYD2_k127_4009555_3 - - - - 0.00000000000009192 74.0
LYD2_k127_4024600_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 3.794e-209 666.0
LYD2_k127_4024600_1 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 464.0
LYD2_k127_4024600_2 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003715 415.0
LYD2_k127_4024600_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 325.0
LYD2_k127_4024600_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002155 271.0
LYD2_k127_4034485_0 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 2.406e-221 706.0
LYD2_k127_4034485_1 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 410.0
LYD2_k127_4034485_10 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000003059 62.0
LYD2_k127_4034485_11 STAS domain K07122 - - 0.00003709 56.0
LYD2_k127_4034485_2 ABC transport system ATP-binding protein K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 387.0
LYD2_k127_4034485_3 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004707 384.0
LYD2_k127_4034485_4 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 371.0
LYD2_k127_4034485_5 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000001035 224.0
LYD2_k127_4034485_6 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000000000000000000000000000000001266 232.0
LYD2_k127_4034485_7 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000000000002979 199.0
LYD2_k127_4034485_8 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000008395 173.0
LYD2_k127_4034485_9 protein conserved in bacteria K11719 - - 0.000000000000000000000000000000002107 139.0
LYD2_k127_4035818_0 histidine kinase A domain protein - - - 5.098e-203 644.0
LYD2_k127_4035818_1 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000001833 179.0
LYD2_k127_4035818_2 Exonuclease K02342 - 2.7.7.7 0.00005518 49.0
LYD2_k127_4038796_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1044.0
LYD2_k127_4038796_1 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007209 278.0
LYD2_k127_4041298_0 glycosyl transferase family 2 K20444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 567.0
LYD2_k127_4042305_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 6.858e-202 640.0
LYD2_k127_4042305_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 323.0
LYD2_k127_4049887_0 Hydantoinase/oxoprolinase N-terminal region K01469 - 3.5.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 410.0
LYD2_k127_4049887_1 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000001512 231.0
LYD2_k127_4049887_2 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000003783 176.0
LYD2_k127_4085230_0 Polysaccharide biosynthesis protein - - - 1.737e-212 689.0
LYD2_k127_4085230_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 436.0
LYD2_k127_4085230_2 PFAM regulatory protein TetR K05501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003449 246.0
LYD2_k127_4085230_3 Glycosyl transferase, family 4 K13007 - - 0.000000000000000000000000000000000000000000000000000000000000009926 229.0
LYD2_k127_4085230_5 O-Antigen ligase - - - 0.000000000000000000000000000001643 136.0
LYD2_k127_4137680_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1234.0
LYD2_k127_4137680_1 XdhC and CoxI family K07402 - - 0.000000000000000006295 84.0
LYD2_k127_4138579_0 Required for chromosome condensation and partitioning K03529 - - 3.643e-288 931.0
LYD2_k127_4138579_1 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 503.0
LYD2_k127_4138579_2 Belongs to the ABC transporter superfamily K02032,K12372 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 452.0
LYD2_k127_4138579_3 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.0000000000000000000000000000000000000000000168 179.0
LYD2_k127_4138579_4 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000001226 54.0
LYD2_k127_4140863_0 PFAM RES domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001118 263.0
LYD2_k127_4140863_1 Protein of unknown function (DUF2384) - - - 0.000000000000000000000000000000000000000000000004346 176.0
LYD2_k127_4140863_2 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000002838 146.0
LYD2_k127_4140863_3 ABC transporter transmembrane region K06147,K18893 - - 0.000000000000000005249 85.0
LYD2_k127_4166147_0 3-dehydroquinate synthase K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006812 306.0
LYD2_k127_4166147_1 PFAM Ig domain protein, group 1 domain protein K20276 - - 0.000000000001186 81.0
LYD2_k127_4168527_0 Protein of unknown function, DUF255 - - - 2.916e-238 760.0
LYD2_k127_4168527_1 The glycine cleavage system catalyzes the degradation of glycine K00605 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 294.0
LYD2_k127_4168527_2 Cytochrome c K08738 - - 0.0000000000000000000000000138 122.0
LYD2_k127_4168527_3 - - - - 0.0000000000000003015 90.0
LYD2_k127_4179406_0 Ami_2 K03806 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000002974 247.0
LYD2_k127_4179406_1 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000004043 224.0
LYD2_k127_4179406_2 Belongs to the BolA IbaG family K05527 - - 0.000000000000000001047 96.0
LYD2_k127_4179406_3 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000004822 74.0
LYD2_k127_4195742_0 MmgE/PrpD family - - - 1.019e-203 642.0
LYD2_k127_4195742_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003078 423.0
LYD2_k127_4195742_2 MgtC family K07507 - - 0.00000000000000000000000000000000000000000000000003121 186.0
LYD2_k127_4195742_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000002985 72.0
LYD2_k127_4233549_0 6-phosphogluconolactonase activity - - - 0.0007364 51.0
LYD2_k127_4241644_0 universal stress protein - - - 0.00000000000000000000000000000000000000003547 156.0
LYD2_k127_4241644_1 cation transport ATPase K01533 - 3.6.3.4 0.0000000000000000000000002816 115.0
LYD2_k127_4241644_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000003446 78.0
LYD2_k127_4248953_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 6.548e-243 759.0
LYD2_k127_4248953_1 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 315.0
LYD2_k127_4248953_2 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000002311 93.0
LYD2_k127_4248953_3 TIGRFAM MJ0042 family finger-like protein - - - 0.0000000000000000005074 94.0
LYD2_k127_4249988_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 573.0
LYD2_k127_4249988_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.00000000000000000000000001852 109.0
LYD2_k127_4249988_2 Dienelactone hydrolase - - - 0.000000000001573 81.0
LYD2_k127_4249988_3 Subtilase family - - - 0.000000000304 74.0
LYD2_k127_4264978_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 359.0
LYD2_k127_4264978_1 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000668 303.0
LYD2_k127_4264978_2 Fumarate lyase K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 287.0
LYD2_k127_4264978_3 Dephospho-CoA kinase K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000001445 198.0
LYD2_k127_4291245_0 PFAM RIO-like kinase K07178 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 388.0
LYD2_k127_4291245_1 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001675 243.0
LYD2_k127_4291245_2 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000008555 194.0
LYD2_k127_4291245_3 methyltransferase - - - 0.000000000000000000000001259 110.0
LYD2_k127_4446020_0 Soluble lytic murein transglycosylase L domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006376 466.0
LYD2_k127_4446020_1 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003597 277.0
LYD2_k127_4446020_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000001222 241.0
LYD2_k127_445906_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1679.0
LYD2_k127_445906_1 Bacterial transferase hexapeptide (six repeats) K02617,K08279 - - 0.000000000000000000000003418 104.0
LYD2_k127_4465681_0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 3.202e-228 714.0
LYD2_k127_4465681_1 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000003057 160.0
LYD2_k127_4465681_2 Cas6 Crispr - - - 0.0000000000000000000000000000002026 131.0
LYD2_k127_4465681_3 Sulfurtransferase TusA - - - 0.000000000000000000006831 96.0
LYD2_k127_4465681_4 - - - - 0.000000000000000002652 89.0
LYD2_k127_4468517_0 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 357.0
LYD2_k127_4468517_1 TIGRFAM RNA polymerase sigma factor RpoE K03088 - - 0.000000000000000000000000000000000000000000001784 165.0
LYD2_k127_4468517_2 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 0.000000000000000000000000000000000001056 140.0
LYD2_k127_4476322_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006468 490.0
LYD2_k127_4476322_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 312.0
LYD2_k127_4476322_2 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 318.0
LYD2_k127_4476322_3 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000005057 246.0
LYD2_k127_4476322_4 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000003131 217.0
LYD2_k127_4476322_5 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000003695 76.0
LYD2_k127_4487744_0 FAD linked oxidases, C-terminal domain - - - 0.0 1265.0
LYD2_k127_4487744_1 - - - - 0.000000000000000005592 89.0
LYD2_k127_4488344_0 cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 430.0
LYD2_k127_4488344_1 Aminotransferase class IV K00824 - 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009925 358.0
LYD2_k127_4488344_2 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009332 344.0
LYD2_k127_4488344_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000007573 207.0
LYD2_k127_4488344_4 Conserved protein of DIM6 NTAB family - - - 0.0000000000000000000000000000000000000000000000004707 184.0
LYD2_k127_4488344_5 Protein of unknown function (DUF493) K09158 - - 0.000000000000000000000000002377 127.0
LYD2_k127_4499900_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009811 251.0
LYD2_k127_4499900_1 - - - - 0.00000000000000000000000000000000000000000000000000000004083 208.0
LYD2_k127_4499900_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000007369 180.0
LYD2_k127_4499900_3 Sulphur transport K07112 - - 0.000000000000000000000000000001065 127.0
LYD2_k127_4499900_4 - - - - 0.00000001875 66.0
LYD2_k127_4499900_5 a g-specific adenine glycosylase K03575 - - 0.000005466 49.0
LYD2_k127_4502335_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 370.0
LYD2_k127_4502335_1 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000003651 124.0
LYD2_k127_4502335_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000001109 88.0
LYD2_k127_4504562_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.189e-194 614.0
LYD2_k127_4504562_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 493.0
LYD2_k127_4510016_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 462.0
LYD2_k127_4510016_1 2-oxoacid acceptor oxidoreductase, gamma subunit, pyruvate 2-ketoisovalerate K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003734 257.0
LYD2_k127_4510016_2 fumarate reductase cytochrome B subunit K00246 - - 0.00002514 51.0
LYD2_k127_4519608_0 FAD linked oxidase - - - 4.119e-287 893.0
LYD2_k127_4519792_0 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 3.793e-204 643.0
LYD2_k127_4519792_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 534.0
LYD2_k127_4519792_2 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 357.0
LYD2_k127_4519792_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001467 241.0
LYD2_k127_4519792_4 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000005477 260.0
LYD2_k127_4519792_5 2-keto-4-pentenoate hydratase K01617 - 4.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000004291 233.0
LYD2_k127_4519792_6 extracellular alpha-helical protein K06894 - - 0.0000000000000000000000000000000000000000000000000000001406 203.0
LYD2_k127_4538625_0 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 449.0
LYD2_k127_4538625_1 Binding-protein-dependent transport system inner membrane component K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001139 280.0
LYD2_k127_4541163_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 4.283e-288 894.0
LYD2_k127_4541163_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 1.231e-215 681.0
LYD2_k127_4541163_2 Glutathione S-Transferase K00799 - 2.5.1.18 0.000000000000000000004359 94.0
LYD2_k127_4555579_0 Threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 362.0
LYD2_k127_4555579_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 317.0
LYD2_k127_4567364_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 1.206e-204 647.0
LYD2_k127_4567364_1 ABC transporter K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 490.0
LYD2_k127_4567364_2 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 431.0
LYD2_k127_4567364_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 310.0
LYD2_k127_4567364_4 Transferase hexapeptide repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008533 241.0
LYD2_k127_4567364_5 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000000004177 236.0
LYD2_k127_4567364_6 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000009203 186.0
LYD2_k127_4567364_7 Belongs to the small heat shock protein (HSP20) family - - - 0.0000000000000000000000000000000000000001219 157.0
LYD2_k127_4567364_8 Belongs to the sigma-70 factor family K03088 - - 0.0002427 46.0
LYD2_k127_4591073_0 MMPL family K07003 - - 5.543e-280 873.0
LYD2_k127_4591073_1 Quinohemoprotein amine dehydrogenase, alpha subunit domain II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008739 603.0
LYD2_k127_4591073_2 Radical SAM superfamily K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 536.0
LYD2_k127_4591073_3 Quinohemoprotein amine dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 413.0
LYD2_k127_4591073_4 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 404.0
LYD2_k127_4591073_5 peptidase U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008271 274.0
LYD2_k127_4591073_6 Photosynthesis system II assembly factor YCF48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001177 269.0
LYD2_k127_4591073_7 Quinohemoprotein amine dehydrogenase, gamma subunit - - - 0.00000000000000000000000000000000000000000000001029 193.0
LYD2_k127_4591073_8 Tellurite resistance protein TerB - - - 0.000000000000000000000000006042 115.0
LYD2_k127_4595610_0 Carboxyl transferase domain K13778 - 6.4.1.5 9.927e-209 655.0
LYD2_k127_4595610_1 PFAM Acyl-CoA dehydrogenase K11731 - - 0.00000000000000000000000000000000000000000000000000000000000000000006607 237.0
LYD2_k127_4595645_0 Membrane-bound lytic murein transglycosylase K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 439.0
LYD2_k127_4595645_1 ApaG domain - - - 0.000000000000000000000000000000000000000000000000000009875 191.0
LYD2_k127_4595645_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000005874 128.0
LYD2_k127_4595645_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000006933 63.0
LYD2_k127_4597625_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 4.461e-282 892.0
LYD2_k127_4597625_1 Sulfite reductase K00381 - 1.8.1.2 7.481e-258 804.0
LYD2_k127_4597625_2 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000001102 255.0
LYD2_k127_4597625_3 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.000000000000000000000000000000000000000000000000000000000000000007353 234.0
LYD2_k127_4597625_4 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000003782 214.0
LYD2_k127_4597625_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000000009611 186.0
LYD2_k127_4597625_6 conserved protein ucp030820 - - - 0.000000000000000000000000000000000000003046 153.0
LYD2_k127_4597625_7 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000000000000004221 147.0
LYD2_k127_4597625_8 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000327 149.0
LYD2_k127_4612473_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000000000000000000000000000000000000000000522 229.0
LYD2_k127_4612473_1 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067,K06192 - - 0.000000000000000000000001446 110.0
LYD2_k127_4612473_2 ABC-type transport auxiliary lipoprotein component K18480 - - 0.00000001603 66.0
LYD2_k127_4615769_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.02e-286 891.0
LYD2_k127_4615769_1 histidine ammonia-lyase K01745 GO:0003674,GO:0003824,GO:0004397,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000728 615.0
LYD2_k127_4615769_2 Sulfate permease family - - - 0.0000000000000000000000000000000000000000000000000000000000005561 241.0
LYD2_k127_4615769_3 protein conserved in bacteria - - - 0.00000000001398 65.0
LYD2_k127_4635002_0 ABC transporter K06158 - - 6.471e-210 670.0
LYD2_k127_4635002_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 2.233e-205 651.0
LYD2_k127_4635002_2 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 569.0
LYD2_k127_4635002_3 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 540.0
LYD2_k127_4635002_4 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000001924 230.0
LYD2_k127_4635002_5 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000000000000003555 260.0
LYD2_k127_4658811_0 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 301.0
LYD2_k127_4658811_1 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 302.0
LYD2_k127_4658811_2 RNA polymerase K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000569 259.0
LYD2_k127_4658811_3 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000001097 210.0
LYD2_k127_4658811_4 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000002159 198.0
LYD2_k127_4658811_5 Protein of unknown function (DUF3106) - - - 0.0000000000000000000000000000022 129.0
LYD2_k127_4658811_6 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.0000000000000000000001482 96.0
LYD2_k127_4658811_7 RDD family - - - 0.000000000000000002767 95.0
LYD2_k127_4658811_8 Protein of unknown function (DUF3619) - - - 0.00000000001711 73.0
LYD2_k127_4671385_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 297.0
LYD2_k127_4671385_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 286.0
LYD2_k127_4671385_2 2Fe-2S -binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000003112 171.0
LYD2_k127_468600_0 TIGRFAM ATP-dependent helicase HrpA K03578 - 3.6.4.13 1.315e-302 953.0
LYD2_k127_468600_1 Protein of unknown function (DUF1631) - - - 0.000000000131 70.0
LYD2_k127_4686444_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 9.746e-305 960.0
LYD2_k127_4686444_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008137 497.0
LYD2_k127_4686444_2 Ammonia monooxygenase K07120 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 302.0
LYD2_k127_4686444_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000145 167.0
LYD2_k127_4686444_4 Belongs to the carbohydrate kinase PfkB family - - - 0.0000000000000000003362 88.0
LYD2_k127_4687684_0 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 466.0
LYD2_k127_4687684_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 426.0
LYD2_k127_4687684_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 424.0
LYD2_k127_4687684_3 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000929 338.0
LYD2_k127_4687684_4 MOSC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 309.0
LYD2_k127_4687684_5 - - - - 0.000000000000000000004861 103.0
LYD2_k127_4687684_6 fibroblast growth factor binding - - - 0.0000000009946 72.0
LYD2_k127_4695724_0 4Fe-4S dicluster domain - - - 0.0 1083.0
LYD2_k127_4696510_0 TIGRFAM histidinol-phosphate phosphatase family protein K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000001128 267.0
LYD2_k127_4696510_1 Acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000007584 247.0
LYD2_k127_4696510_2 Metal-dependent hydrolase K07043 - - 0.000000000000000000000000000000000000000000000567 184.0
LYD2_k127_4696510_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000319 166.0
LYD2_k127_4696510_4 Belongs to the frataxin K06202 - - 0.00000000000000000000007344 101.0
LYD2_k127_4704460_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000007722 177.0
LYD2_k127_4704460_1 Acetyltransferase (GNAT) domain K02348 - - 0.0000000000000000000000000000000000000000362 160.0
LYD2_k127_4704460_2 EVE domain - - - 0.000000000000000000000000000000000001526 143.0
LYD2_k127_4704460_3 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000004402 90.0
LYD2_k127_4722920_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - 8.177e-244 762.0
LYD2_k127_4722920_1 oxaloacetate decarboxylase activity K01572 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003399 555.0
LYD2_k127_4722920_2 Oxidoreductase molybdopterin binding - - - 0.00000000000000000000000000000000000000000000000000001301 190.0
LYD2_k127_4722920_3 sodium ion export across plasma membrane K01573 GO:0003674,GO:0003824,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008948,GO:0015672,GO:0016829,GO:0016830,GO:0016831,GO:0030001,GO:0051179,GO:0051234 4.1.1.3 0.00000000000000000000000000001045 123.0
LYD2_k127_4722920_4 CoA carboxylase activity K01965 - 6.4.1.3 0.00000000000000000000000000006411 127.0
LYD2_k127_4728852_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 454.0
LYD2_k127_4728852_1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000002582 218.0
LYD2_k127_4729642_0 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 488.0
LYD2_k127_4729642_1 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000007337 159.0
LYD2_k127_4736981_0 PFAM glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 301.0
LYD2_k127_4736981_1 GtrA-like protein - - - 0.000000000000004557 86.0
LYD2_k127_4736981_2 - - - - 0.00000000000007435 82.0
LYD2_k127_4738853_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0 1182.0
LYD2_k127_4738853_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.0 1162.0
LYD2_k127_4738853_10 Type II secretion system (T2SS), protein K K02460 - - 0.00000000000000000000000000000000000000000000000001413 199.0
LYD2_k127_4738853_11 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.00000000000000000000000000000000000000000000000007222 194.0
LYD2_k127_4738853_12 dna polymerase iii K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000001146 182.0
LYD2_k127_4738853_13 Pyruvate ferredoxin/flavodoxin oxidoreductase K00179,K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000008071 190.0
LYD2_k127_4738853_14 - - - - 0.000000000000000000000000000000000000000000008295 167.0
LYD2_k127_4738853_15 Staphylococcal nuclease homologues - - - 0.00000000000000000000000000000000000003944 151.0
LYD2_k127_4738853_16 Type II secretion system (T2SS), protein J - - - 0.0000000000000000000000000000000009447 144.0
LYD2_k127_4738853_17 Type II secretion system (T2SS), protein I K02458 - - 0.00000000000000000005688 102.0
LYD2_k127_4738853_18 general secretion pathway protein K02457 - - 0.000000007655 64.0
LYD2_k127_4738853_19 endonuclease I - - - 0.0000001095 62.0
LYD2_k127_4738853_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 2.455e-195 632.0
LYD2_k127_4738853_20 General Secretory Pathway K02463 - - 0.00000612 57.0
LYD2_k127_4738853_21 GspL periplasmic domain K02461 - - 0.0000106 57.0
LYD2_k127_4738853_22 involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02462 GO:0008150,GO:0009405,GO:0044419,GO:0051704 - 0.00006016 52.0
LYD2_k127_4738853_3 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179,K08941 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902 506.0
LYD2_k127_4738853_4 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008761 400.0
LYD2_k127_4738853_5 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 351.0
LYD2_k127_4738853_6 PFAM Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001842 252.0
LYD2_k127_4738853_7 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000178 259.0
LYD2_k127_4738853_8 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000000000001545 227.0
LYD2_k127_4738853_9 Protein of unknown function (DUF1624) - - - 0.0000000000000000000000000000000000000000000000000002016 198.0
LYD2_k127_4778480_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 423.0
LYD2_k127_4778480_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 295.0
LYD2_k127_4778480_2 Surface antigen K07278 - - 0.0000000002601 61.0
LYD2_k127_4801592_0 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 404.0
LYD2_k127_4801592_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006103 303.0
LYD2_k127_4801592_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000427 243.0
LYD2_k127_4801592_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000006824 153.0
LYD2_k127_4801592_4 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000003344 89.0
LYD2_k127_4867228_0 Sigma-54 interaction domain K07715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 580.0
LYD2_k127_4867228_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 374.0
LYD2_k127_4867228_2 Domain of unknown function (DUF4337) - - - 0.000000000000000000000000000000000000000000000000000000000000000005118 229.0
LYD2_k127_4867228_3 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000000000106 166.0
LYD2_k127_4867228_4 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000006594 162.0
LYD2_k127_4893796_0 abc transporter K06020 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 435.0
LYD2_k127_4893796_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 293.0
LYD2_k127_4893796_2 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000002664 218.0
LYD2_k127_4893796_3 Domain of unknown function (DUF4124) - - - 0.00000000000002764 83.0
LYD2_k127_4936405_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 531.0
LYD2_k127_4936405_1 Histidine kinase K02484,K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 393.0
LYD2_k127_4936405_2 response regulator K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 302.0
LYD2_k127_4936405_3 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000007958 151.0
LYD2_k127_4936405_4 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000006575 142.0
LYD2_k127_493815_0 Putative amidoligase enzyme (DUF2126) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 603.0
LYD2_k127_493815_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 605.0
LYD2_k127_493815_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.00000004283 54.0
LYD2_k127_4948040_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 1.013e-218 687.0
LYD2_k127_4948040_1 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000003893 223.0
LYD2_k127_4948040_2 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000000000000000000000009965 140.0
LYD2_k127_4986323_0 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 325.0
LYD2_k127_4986323_1 COGs COG0790 FOG TPR repeat SEL1 subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 302.0
LYD2_k127_5041695_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 401.0
LYD2_k127_5041695_1 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002788 266.0
LYD2_k127_5041695_2 SURF1 family - - - 0.00000000000000000000000000000000000000002598 157.0
LYD2_k127_5041695_3 signal sequence binding - - - 0.000000000000000000000000000000000008433 145.0
LYD2_k127_5052836_0 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 311.0
LYD2_k127_5052836_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000002951 194.0
LYD2_k127_5052836_2 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000003098 145.0
LYD2_k127_5060944_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008184 614.0
LYD2_k127_5060944_1 Solute carrier family 35 - - - 0.0000004215 55.0
LYD2_k127_5088676_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 1.453e-296 919.0
LYD2_k127_5088676_1 Major facilitator superfamily K07552,K18552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 335.0
LYD2_k127_5088676_2 EamA-like transporter family K15270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000904 255.0
LYD2_k127_5101850_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 460.0
LYD2_k127_5101850_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008503 429.0
LYD2_k127_5101850_10 Uncharacterized ACR, COG1993 - - - 0.00000000000000000000000000000001491 130.0
LYD2_k127_5101850_11 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000001061 103.0
LYD2_k127_5101850_12 - - - - 0.00000000000000005529 86.0
LYD2_k127_5101850_13 OmpA-like transmembrane domain - - - 0.000008431 59.0
LYD2_k127_5101850_2 Bacterial periplasmic substrate-binding proteins K10001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 360.0
LYD2_k127_5101850_3 PFAM PfkB domain protein K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 342.0
LYD2_k127_5101850_4 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000003599 254.0
LYD2_k127_5101850_5 Aldolase K01631 - 4.1.2.21 0.000000000000000000000000000000000000000000000000000000000000000000004429 240.0
LYD2_k127_5101850_6 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000008102 234.0
LYD2_k127_5101850_7 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000008711 224.0
LYD2_k127_5101850_8 - - - - 0.0000000000000000000000000000000000000000001248 168.0
LYD2_k127_5101850_9 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000000000000000000003119 155.0
LYD2_k127_5106812_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 6.06e-298 935.0
LYD2_k127_5106812_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 3.161e-244 764.0
LYD2_k127_5106812_10 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 331.0
LYD2_k127_5106812_11 Belongs to the peptidase S24 family K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000006297 260.0
LYD2_k127_5106812_12 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000000000000000000009543 205.0
LYD2_k127_5106812_13 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000000004452 165.0
LYD2_k127_5106812_14 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000004369 81.0
LYD2_k127_5106812_2 Histidine kinase-like ATPases - - - 2.238e-216 708.0
LYD2_k127_5106812_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 600.0
LYD2_k127_5106812_4 PFAM extracellular solute-binding protein family 1 K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 522.0
LYD2_k127_5106812_5 Binding-protein-dependent transport system inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008401 447.0
LYD2_k127_5106812_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004591 441.0
LYD2_k127_5106812_7 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 424.0
LYD2_k127_5106812_8 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004858 357.0
LYD2_k127_5106812_9 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 339.0
LYD2_k127_5123895_0 KR domain K10780 - 1.3.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 304.0
LYD2_k127_5123895_1 KR domain - - - 0.00000000000000000000000000000000000000000000000000000002793 216.0
LYD2_k127_5123895_2 Phosphopantetheine attachment site - - - 0.0000000000000000000000000000000000002031 152.0
LYD2_k127_5123895_3 FabA-like domain - - - 0.0000000000000000000000000000003733 134.0
LYD2_k127_5123895_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00647,K09458 - 2.3.1.179,2.3.1.41 0.0000000000000000000000003709 111.0
LYD2_k127_5123895_5 Alpha beta hydrolase - - - 0.0003993 52.0
LYD2_k127_5123895_6 amino acid adenylation domain protein K04780 - - 0.0005785 52.0
LYD2_k127_5124256_0 Cysteine-rich domain - - - 1.698e-213 673.0
LYD2_k127_5124256_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 542.0
LYD2_k127_5124256_2 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002125 409.0
LYD2_k127_5124256_3 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003539 250.0
LYD2_k127_5124256_4 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003042 242.0
LYD2_k127_5124256_5 Protein of unknown function (DUF3501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000004716 242.0
LYD2_k127_5124256_6 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000002765 213.0
LYD2_k127_5143204_0 Formyl transferase, C-terminal domain K19640 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 596.0
LYD2_k127_5143204_1 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 571.0
LYD2_k127_5143204_2 Belongs to the HypD family K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000606 223.0
LYD2_k127_5159958_0 Histidine kinase-like ATPases - - - 2.684e-248 806.0
LYD2_k127_5159958_1 Oxidoreductase NAD-binding domain K15511 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 444.0
LYD2_k127_5159958_2 Thioredoxin-like K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 401.0
LYD2_k127_5159958_3 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000003706 151.0
LYD2_k127_5159958_4 Invasion gene expression up-regulator, SirB - - - 0.00000000000000000000000000005242 120.0
LYD2_k127_5162093_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 3.311e-320 1006.0
LYD2_k127_5162093_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 443.0
LYD2_k127_5162093_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 356.0
LYD2_k127_5162093_3 Protein of unknown function (DUF1631) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 310.0
LYD2_k127_5162093_4 molybdopterin binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008034 282.0
LYD2_k127_5162093_5 Lytic murein transglycosylase B K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001177 282.0
LYD2_k127_5162093_6 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000006295 175.0
LYD2_k127_5162093_7 MaoC like domain - - - 0.00000000000000000000000000000000000000000001471 169.0
LYD2_k127_5164774_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 5.324e-208 661.0
LYD2_k127_5164774_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006428 519.0
LYD2_k127_5164774_2 twitching motility protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 452.0
LYD2_k127_5164774_3 Binding-protein-dependent transport system inner membrane component K02054,K11071,K11075 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 384.0
LYD2_k127_5164774_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 332.0
LYD2_k127_5164774_5 Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000008485 213.0
LYD2_k127_5164774_6 Haemolysin-III related K11068 - - 0.0000001915 60.0
LYD2_k127_5164774_7 Sterol-binding protein K03690 - - 0.0002017 51.0
LYD2_k127_5180275_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002408 522.0
LYD2_k127_5180275_1 ABC-type (Unclassified) transport system, ATPase component K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 379.0
LYD2_k127_5180275_2 Sigma 54 modulation protein / S30EA ribosomal protein K05808 - - 0.00000000000000000000000126 104.0
LYD2_k127_5180275_3 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000001463 72.0
LYD2_k127_5185952_0 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000001985 250.0
LYD2_k127_5185952_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000153 209.0
LYD2_k127_5185952_2 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000000000000000004948 198.0
LYD2_k127_5185952_3 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000002156 111.0
LYD2_k127_5192417_0 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000000000000009046 215.0
LYD2_k127_5192417_1 OsmC-like protein K07397 - - 0.00000000000000000000000000000000003476 140.0
LYD2_k127_5192417_2 lactate racemase activity K22373 - 5.1.2.1 0.00000000000000000000000002725 108.0
LYD2_k127_5192417_3 - - - - 0.000000000007168 70.0
LYD2_k127_5192417_4 Domain of unknown function (DUF4440) - - - 0.0000000000182 64.0
LYD2_k127_5192931_0 fructose-bisphosphate aldolase K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003842 413.0
LYD2_k127_5192931_1 META domain K03668 - - 0.0000000000000000006117 92.0
LYD2_k127_520267_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007562 353.0
LYD2_k127_520267_1 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001583 285.0
LYD2_k127_520267_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000009718 188.0
LYD2_k127_5206338_0 Predicted membrane protein (DUF2339) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 581.0
LYD2_k127_5206338_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005551 407.0
LYD2_k127_5206338_2 Transporter, major facilitator family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 297.0
LYD2_k127_5206338_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 303.0
LYD2_k127_5207645_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 292.0
LYD2_k127_5207645_1 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003681 282.0
LYD2_k127_5232047_0 pfam abc K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 439.0
LYD2_k127_5232047_1 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008754 439.0
LYD2_k127_5232047_10 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000004756 154.0
LYD2_k127_5232047_11 glycosyl transferase family 2 K20444 - - 0.00000000000000000000000000000007025 129.0
LYD2_k127_5232047_12 fimbrial assembly K02461 - - 0.00000000000000000000000000000009936 142.0
LYD2_k127_5232047_13 General secretion pathway protein H K02457 - - 0.0000000000000000000000000000002633 136.0
LYD2_k127_5232047_14 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000001023 117.0
LYD2_k127_5232047_15 Type II secretion system (T2SS), protein M subtype b K02462 - - 0.0000000000000002335 90.0
LYD2_k127_5232047_16 Prokaryotic N-terminal methylation motif - - - 0.00000000001307 72.0
LYD2_k127_5232047_17 - - - - 0.000000297 58.0
LYD2_k127_5232047_18 Pfam:T4SC - - - 0.0005175 51.0
LYD2_k127_5232047_2 radical SAM K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 369.0
LYD2_k127_5232047_3 Type II secretion system K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 327.0
LYD2_k127_5232047_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 298.0
LYD2_k127_5232047_5 ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000194 211.0
LYD2_k127_5232047_6 PFAM Acyltransferase - - - 0.000000000000000000000000000000000000000000000000003224 196.0
LYD2_k127_5232047_7 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000001229 193.0
LYD2_k127_5232047_8 PFAM General secretion pathway protein K K02460 - - 0.00000000000000000000000000000000000000000000004471 187.0
LYD2_k127_5232047_9 Type II secretion system (T2SS), protein G K02456 - - 0.0000000000000000000000000000000000000002181 156.0
LYD2_k127_5237518_0 pyruvate phosphate dikinase K01006,K01007 - 2.7.9.1,2.7.9.2 1.987e-222 698.0
LYD2_k127_5237518_1 Bacterial extracellular solute-binding protein K02012,K02055 - - 0.000000000000000000000000000000000000000000000002327 178.0
LYD2_k127_5254793_0 B12 binding domain K22491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 304.0
LYD2_k127_5254793_1 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000007281 176.0
LYD2_k127_5254793_2 PGAP1-like protein - - - 0.00000000000000000000000000000000000000001458 168.0
LYD2_k127_5254793_3 Short chain dehydrogenase - - - 0.00000000000000000000000000001911 119.0
LYD2_k127_5254793_4 cyclic nucleotide binding K10914 - - 0.000000000000000000000009554 107.0
LYD2_k127_5254793_5 Belongs to the UPF0312 family - - - 0.0000000001534 61.0
LYD2_k127_5267191_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007749 479.0
LYD2_k127_5267191_1 PFAM isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 294.0
LYD2_k127_5267191_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000009867 252.0
LYD2_k127_5267191_3 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.00000000000000000000000000000000000000004974 153.0
LYD2_k127_5274643_0 ornithine cyclodeaminase mu-crystallin K01750,K19244 - 1.4.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 522.0
LYD2_k127_5274643_1 deiminase K05603 - 3.5.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006208 473.0
LYD2_k127_5274643_2 glycine betaine K05845 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 419.0
LYD2_k127_5274643_3 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 332.0
LYD2_k127_5274643_4 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000002083 235.0
LYD2_k127_5274643_5 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000001015 155.0
LYD2_k127_5274643_6 HutD K09975 - - 0.0000000000000000000000000000000006282 140.0
LYD2_k127_5277579_0 LysM domain K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 420.0
LYD2_k127_5277579_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001773 263.0
LYD2_k127_5277579_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000006729 239.0
LYD2_k127_5277579_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000007285 133.0
LYD2_k127_5278229_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 4.64e-302 950.0
LYD2_k127_5278229_1 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 449.0
LYD2_k127_5278229_2 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 422.0
LYD2_k127_5278229_3 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 432.0
LYD2_k127_5278229_4 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 325.0
LYD2_k127_5278229_5 PFAM aminotransferase, class I K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 313.0
LYD2_k127_5278229_6 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000004122 261.0
LYD2_k127_5278229_7 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009682 257.0
LYD2_k127_5278229_8 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000002575 214.0
LYD2_k127_5283628_0 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 325.0
LYD2_k127_5283628_1 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 306.0
LYD2_k127_5283628_2 restriction endonuclease K07448 - - 0.00000000000000000000000000000000000000000000000000000231 197.0
LYD2_k127_5283628_3 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053 - - 0.0000000007749 64.0
LYD2_k127_5292526_0 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 531.0
LYD2_k127_5292526_1 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008956 471.0
LYD2_k127_5292526_2 Glycolate oxidase subunit GlcD K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 364.0
LYD2_k127_5292526_3 Glycolate oxidase subunit GlcD K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 342.0
LYD2_k127_5292526_4 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000007199 129.0
LYD2_k127_5295239_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 3.81e-205 653.0
LYD2_k127_5295239_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 2.815e-204 642.0
LYD2_k127_5295239_10 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000888 70.0
LYD2_k127_5295239_11 Protein of unknown function (DUF721) - - - 0.00005887 53.0
LYD2_k127_5295239_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 509.0
LYD2_k127_5295239_3 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 450.0
LYD2_k127_5295239_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 418.0
LYD2_k127_5295239_5 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 422.0
LYD2_k127_5295239_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 383.0
LYD2_k127_5295239_7 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 337.0
LYD2_k127_5295239_8 Peptidase family M23 K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 316.0
LYD2_k127_5295239_9 POTRA domain, FtsQ-type - - - 0.000000000000000000000000000000000000000000000000002256 190.0
LYD2_k127_5302884_0 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 7.83e-230 728.0
LYD2_k127_5302884_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 573.0
LYD2_k127_5302884_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000007595 151.0
LYD2_k127_5304845_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 5.136e-201 632.0
LYD2_k127_5304845_1 Protein conserved in bacteria K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 610.0
LYD2_k127_5304845_10 PFAM DinB family - - - 0.000000000002716 66.0
LYD2_k127_5304845_11 Late embryogenesis abundant protein - - - 0.000000000007255 73.0
LYD2_k127_5304845_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 564.0
LYD2_k127_5304845_3 Putative oxidoreductase C terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 563.0
LYD2_k127_5304845_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 498.0
LYD2_k127_5304845_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 397.0
LYD2_k127_5304845_6 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 334.0
LYD2_k127_5304845_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000002686 230.0
LYD2_k127_5304845_8 Peptidyl-tRNA hydrolase K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000689 221.0
LYD2_k127_5304845_9 protein conserved in bacteria K09921 - - 0.00000000000000000000000000000000000000000000000000000000002953 214.0
LYD2_k127_5325874_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003885 459.0
LYD2_k127_5325874_1 phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 341.0
LYD2_k127_5325874_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000004304 175.0
LYD2_k127_5325874_3 transcriptional regulator - - - 0.0000000000000000000000000000000000000006177 153.0
LYD2_k127_5333070_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.192e-262 835.0
LYD2_k127_5333070_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 382.0
LYD2_k127_5333070_2 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.00000000000000002702 84.0
LYD2_k127_5350684_0 PFAM ABC transporter K02049,K15555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 422.0
LYD2_k127_5350684_1 epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 409.0
LYD2_k127_5350684_2 PGAP1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 315.0
LYD2_k127_5398367_0 MmgE/PrpD family K01720 - 4.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 304.0
LYD2_k127_5398367_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002775 267.0
LYD2_k127_5398367_2 Protein of unknown function (DUF3617) - - - 0.0000000000000000000000002459 112.0
LYD2_k127_5398656_0 Ribonuclease E/G family K08301 - - 4.409e-228 725.0
LYD2_k127_5398656_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 587.0
LYD2_k127_5398656_2 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 321.0
LYD2_k127_5398656_3 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000002182 206.0
LYD2_k127_5398656_4 Bacterial protein of unknown function (DUF924) - - - 0.0000000000000000000000000000000000000000000000000000004739 198.0
LYD2_k127_5398656_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000003522 204.0
LYD2_k127_5398656_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000000000001061 174.0
LYD2_k127_5398656_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000004604 149.0
LYD2_k127_5398656_8 Esterase PHB depolymerase K05973 - 3.1.1.75 0.00000000000000000000000000000000005582 143.0
LYD2_k127_5407488_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1215.0
LYD2_k127_5407488_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 5.802e-211 673.0
LYD2_k127_5407488_10 NlpC/P60 family K13695,K19303 - - 0.00000000000000000000000000000000000000000000001859 177.0
LYD2_k127_5407488_11 Ankyrin repeat K06867 - - 0.0000000000000000000000000000000000000001084 161.0
LYD2_k127_5407488_12 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000002804 139.0
LYD2_k127_5407488_13 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000002697 79.0
LYD2_k127_5407488_2 Bacterial trigger factor protein (TF) K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 432.0
LYD2_k127_5407488_3 Squalene synthase HpnD K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 376.0
LYD2_k127_5407488_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 320.0
LYD2_k127_5407488_5 squalene synthase HpnC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 307.0
LYD2_k127_5407488_6 squalene-associated FAD-dependent desaturase K21677 - 1.17.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001249 287.0
LYD2_k127_5407488_7 SmpB protein K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000000003164 242.0
LYD2_k127_5407488_8 Hydrolase, TatD family K03424 - - 0.00000000000000000000000000000000000000000000000042 177.0
LYD2_k127_5407488_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000526 181.0
LYD2_k127_5436566_0 UvrD REP K03657 - 3.6.4.12 5.422e-196 620.0
LYD2_k127_5436566_1 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 547.0
LYD2_k127_5436566_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 519.0
LYD2_k127_5436566_3 Nitrile hydratase K01721,K20807 - 4.2.1.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 289.0
LYD2_k127_5436566_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000000000000000000000000009705 166.0
LYD2_k127_5436566_5 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000000000000000000000000324 147.0
LYD2_k127_5436566_6 Nitrile hydratase beta subunit K20807 - 4.2.1.84 0.0000000000000000000000000000003883 132.0
LYD2_k127_5436906_0 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 564.0
LYD2_k127_5436906_1 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 366.0
LYD2_k127_5436906_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 340.0
LYD2_k127_5436906_3 Sulfurtransferase TusA - - - 0.000000000000000000000000000000000000000000000000003984 184.0
LYD2_k127_5436906_4 - - - - 0.0000000000000000000000000000000000000000000001227 176.0
LYD2_k127_5436906_5 transporter K07238 - - 0.000000000000000000000000000000009732 138.0
LYD2_k127_5436906_6 Peptidase S24-like - - - 0.0000000000000000000000000000005739 130.0
LYD2_k127_5436906_7 - - - - 0.000000000003478 74.0
LYD2_k127_5445683_0 Protein involved in transmembrane transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006112 536.0
LYD2_k127_5445683_1 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 464.0
LYD2_k127_5445683_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 385.0
LYD2_k127_5445683_3 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000001365 234.0
LYD2_k127_5445683_4 TPM domain K08988 - - 0.00000000000000000000000000000000000000000000000001666 187.0
LYD2_k127_5445683_5 LemA family K03744 - - 0.0000000000001854 73.0
LYD2_k127_5497200_0 PFAM peptidase S10 serine carboxypeptidase - - - 3.477e-218 687.0
LYD2_k127_5497200_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 1.263e-205 651.0
LYD2_k127_5497200_2 - - - - 0.00000000000001109 77.0
LYD2_k127_5501685_0 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 2.35e-208 663.0
LYD2_k127_5501685_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 9.894e-199 642.0
LYD2_k127_5501685_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007477 297.0
LYD2_k127_5501685_3 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000004207 187.0
LYD2_k127_5501685_4 cell division protein - - - 0.0000000000000000000000001657 116.0
LYD2_k127_5501685_5 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.000000006902 59.0
LYD2_k127_551828_0 TonB dependent receptor K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002457 271.0
LYD2_k127_551828_1 Periplasmic binding protein K02016,K06858 - - 0.00000000000000000000000000000000000000000000000000000003787 206.0
LYD2_k127_55319_0 Belongs to the peptidase M16 family K07263 - - 1.032e-267 853.0
LYD2_k127_55319_1 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009674 586.0
LYD2_k127_55319_2 MCM2/3/5 family K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 469.0
LYD2_k127_55319_3 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 359.0
LYD2_k127_55319_4 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 315.0
LYD2_k127_55319_5 EamA-like transporter family K15268 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001671 268.0
LYD2_k127_55319_6 PFAM AMMECR1 domain protein - - - 0.0000000000000000000000000000000000000000000000000000356 197.0
LYD2_k127_5585527_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1767.0
LYD2_k127_5585527_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1118.0
LYD2_k127_5585527_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 513.0
LYD2_k127_5585527_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 469.0
LYD2_k127_5585527_4 ABC transporter substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001201 263.0
LYD2_k127_5585527_5 - - - - 0.000001086 54.0
LYD2_k127_5720830_0 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 346.0
LYD2_k127_5720830_1 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 308.0
LYD2_k127_5720830_2 protein conserved in bacteria K09800 - - 0.00000000000000000000000000000000000000000000000001228 186.0
LYD2_k127_5720830_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000008701 173.0
LYD2_k127_5720830_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000003646 139.0
LYD2_k127_5731913_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 2.239e-284 891.0
LYD2_k127_5731913_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 391.0
LYD2_k127_5731913_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 339.0
LYD2_k127_5731913_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 312.0
LYD2_k127_5731913_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000003044 231.0
LYD2_k127_5731913_5 Belongs to the skp family K06142 - - 0.00000000000000000000000000000000000000000000000000001748 193.0
LYD2_k127_5731913_6 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000001743 190.0
LYD2_k127_5731913_7 SAF K16845 - 4.4.1.24 0.0000000000000000000000000000000000114 147.0
LYD2_k127_574745_0 glycosyl transferase K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002857 263.0
LYD2_k127_574745_1 NAD(P)H-binding K01784 - 5.1.3.2 0.000000000000000001778 98.0
LYD2_k127_5753915_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 2.445e-242 766.0
LYD2_k127_5753915_1 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 1.605e-241 767.0
LYD2_k127_5753915_10 Pfam:DUF1446 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 337.0
LYD2_k127_5753915_11 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 308.0
LYD2_k127_5753915_12 branched-chain amino acid K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007173 267.0
LYD2_k127_5753915_13 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000275 254.0
LYD2_k127_5753915_14 gntR family K05799 - - 0.0000000000000000000000000000000000000000000000000000000001802 217.0
LYD2_k127_5753915_15 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000000000000000000000000004614 154.0
LYD2_k127_5753915_16 B12 binding domain - - - 0.0000000000000000000000001764 106.0
LYD2_k127_5753915_17 - - - - 0.0000000000002643 82.0
LYD2_k127_5753915_2 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 551.0
LYD2_k127_5753915_3 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 542.0
LYD2_k127_5753915_4 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008794 539.0
LYD2_k127_5753915_5 3-keto-5-aminohexanoate cleavage protein K18013 - 2.3.1.247 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 500.0
LYD2_k127_5753915_6 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 438.0
LYD2_k127_5753915_7 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 355.0
LYD2_k127_5753915_8 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 355.0
LYD2_k127_5753915_9 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 332.0
LYD2_k127_5757318_0 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 359.0
LYD2_k127_5757318_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 323.0
LYD2_k127_5757318_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000006323 150.0
LYD2_k127_5757318_3 Glutathione S-transferase, C-terminal domain K11209 - - 0.000000000557 70.0
LYD2_k127_5759732_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.048e-242 764.0
LYD2_k127_5759732_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000006849 178.0
LYD2_k127_5773064_0 Ion transport protein K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 283.0
LYD2_k127_5773064_1 - - - - 0.00000000000000000000000000000000000006181 165.0
LYD2_k127_5773064_2 Forkhead associated domain - - - 0.00000001267 67.0
LYD2_k127_5773064_3 ABC transporter substrate binding protein K01989 - - 0.00000002586 57.0
LYD2_k127_5773064_4 Belongs to the SEDS family - - - 0.000000595 63.0
LYD2_k127_5773064_5 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000006513 60.0
LYD2_k127_5773079_0 ABC transporter transmembrane region K06147 - - 1.475e-262 820.0
LYD2_k127_5773079_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00520,K21739 - 1.16.1.1 2.376e-197 627.0
LYD2_k127_5773079_2 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 416.0
LYD2_k127_5773079_3 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 306.0
LYD2_k127_5773079_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000374 208.0
LYD2_k127_5773079_5 Predicted methyltransferase regulatory domain - - - 0.0000000000000000000001068 98.0
LYD2_k127_5773079_6 PFAM peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 - - 0.0000000000000000007201 91.0
LYD2_k127_5773079_7 Putative zinc-finger - - - 0.0000000393 58.0
LYD2_k127_5773079_8 Predicted methyltransferase regulatory domain - - - 0.000006619 55.0
LYD2_k127_5773788_0 Rieske (2fe-2S) K00479 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002146 254.0
LYD2_k127_5773788_1 Oxidoreductase NAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000009831 211.0
LYD2_k127_5773788_2 STAS domain - - - 0.00004741 51.0
LYD2_k127_5776864_0 CBS domain protein K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000761 336.0
LYD2_k127_5776864_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007424 324.0
LYD2_k127_5779805_0 Sodium/hydrogen exchanger family K03455,K11745,K11747 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 423.0
LYD2_k127_5779805_1 NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 354.0
LYD2_k127_5779805_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 297.0
LYD2_k127_5779805_3 NADPH-quinone reductase (modulator of drug activity B) K00355,K11746,K11748 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000002426 203.0
LYD2_k127_5779805_4 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000001065 152.0
LYD2_k127_5779805_5 Transcriptional regulator - - - 0.00000000000000000000005336 100.0
LYD2_k127_5792299_0 Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane K07791,K07792 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 462.0
LYD2_k127_5792299_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006931 266.0
LYD2_k127_5792299_2 outer membrane porin, OprD family - - - 0.000000000000000000000000000000000000000000000000000000000002517 225.0
LYD2_k127_5794056_0 Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate K07749 - 2.8.3.16 1.473e-250 775.0
LYD2_k127_5794056_1 PFAM formyl transferase domain protein K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008168 467.0
LYD2_k127_5794056_2 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00122 - 1.17.1.9 0.000000000000000000000000000000000006638 140.0
LYD2_k127_5794056_3 Belongs to the TPP enzyme family K01577 - 4.1.1.8 0.000000000000000000000000000000004609 129.0
LYD2_k127_5799583_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin - - - 0.0 1257.0
LYD2_k127_5799583_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 295.0
LYD2_k127_5799583_2 glutamate synthase - - - 0.00000000000000000000000000000000000000000001815 164.0
LYD2_k127_5800016_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 1.547e-215 685.0
LYD2_k127_5800016_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007552 595.0
LYD2_k127_5800016_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 490.0
LYD2_k127_5800016_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 463.0
LYD2_k127_5800016_4 surface antigen K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006318 372.0
LYD2_k127_5800016_5 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 346.0
LYD2_k127_5800016_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000004962 260.0
LYD2_k127_5800016_7 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000000000000003116 186.0
LYD2_k127_5800016_8 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.0000000000000000000001063 100.0
LYD2_k127_5800712_0 Peroxiredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000001317 229.0
LYD2_k127_5800712_1 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000000000000003727 203.0
LYD2_k127_5800712_2 YCII-related domain K09780 - - 0.0000000002075 66.0
LYD2_k127_5800712_3 RND efflux system, outer membrane lipoprotein, NodT - - - 0.0001088 45.0
LYD2_k127_5804031_0 abc transporter atp-binding protein K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001293 296.0
LYD2_k127_5804031_1 sodium ABC transporter, permease K09696 - - 0.0000000000000000000000000000000000000000000000000000000000000005914 238.0
LYD2_k127_5804031_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000169 206.0
LYD2_k127_5804031_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01640 - 4.1.3.4 0.00000000000000000001155 92.0
LYD2_k127_5809024_0 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 297.0
LYD2_k127_5809024_1 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000000000002425 206.0
LYD2_k127_5810084_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1.4e-302 951.0
LYD2_k127_5810084_1 phage integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001967 289.0
LYD2_k127_5810084_2 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000006817 188.0
LYD2_k127_5810084_3 PFAM Cupin 4 family protein K18850 - 1.14.11.47 0.0000000000000000000000001641 111.0
LYD2_k127_5810084_4 PFAM Integrase catalytic region - - - 0.0000000000000000403 82.0
LYD2_k127_5814048_0 N-acetyltransferase - - - 0.0000000000000000000000000445 117.0
LYD2_k127_5835322_0 Poly-beta-hydroxybutyrate polymerase N terminal K03821 - - 1.206e-268 861.0
LYD2_k127_5835322_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005611 533.0
LYD2_k127_5835322_2 DNA helicase K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 517.0
LYD2_k127_5835322_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 516.0
LYD2_k127_5835322_4 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 299.0
LYD2_k127_5835322_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000003445 96.0
LYD2_k127_5840949_0 Predicted integral membrane protein (DUF2189) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 292.0
LYD2_k127_5840949_1 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001003 279.0
LYD2_k127_5842554_0 glutaminyl-tRNA K01886 - 6.1.1.18 5.01e-265 827.0
LYD2_k127_5842554_1 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000001145 229.0
LYD2_k127_5842612_0 HELICc2 K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 614.0
LYD2_k127_5842612_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 374.0
LYD2_k127_5842612_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 312.0
LYD2_k127_5844501_0 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0 1021.0
LYD2_k127_5844501_1 Cytochrome bd-type quinol oxidase, subunit 1 K00425 - 1.10.3.14 1.53e-239 750.0
LYD2_k127_5844501_10 N-terminal half of MaoC dehydratase - - - 0.0000000000000000000000000000000000000000002035 164.0
LYD2_k127_5844501_11 PIN domain - - - 0.0000000000000000000000000000000000006868 146.0
LYD2_k127_5844501_12 - - - - 0.00000000000000000000000000000002655 130.0
LYD2_k127_5844501_13 dksA traR - - - 0.00000000000000000000000004588 117.0
LYD2_k127_5844501_14 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000000000000004511 94.0
LYD2_k127_5844501_15 Protein of unknown function (DUF1778) - - - 0.000000000000000000449 94.0
LYD2_k127_5844501_16 PFAM GCN5-related N-acetyltransferase - - - 0.000000000007691 73.0
LYD2_k127_5844501_17 - - - - 0.0000000004272 63.0
LYD2_k127_5844501_2 iron ion homeostasis - - - 3.012e-209 687.0
LYD2_k127_5844501_3 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 3.29e-205 653.0
LYD2_k127_5844501_4 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 492.0
LYD2_k127_5844501_5 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 379.0
LYD2_k127_5844501_6 oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 294.0
LYD2_k127_5844501_7 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000003397 257.0
LYD2_k127_5844501_8 Phospholipase D. Active site motifs. K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000002871 253.0
LYD2_k127_5844501_9 MaoC like domain - - - 0.000000000000000000000000000000000000000000000000000236 194.0
LYD2_k127_5854762_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 6.682e-206 666.0
LYD2_k127_5854762_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 502.0
LYD2_k127_5854762_2 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 396.0
LYD2_k127_5854762_3 Glycine cleavage system regulatory protein - - - 0.000000000000000000000000000202 118.0
LYD2_k127_5866861_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1011.0
LYD2_k127_5866861_1 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 2.773e-294 920.0
LYD2_k127_5866861_2 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 537.0
LYD2_k127_5866861_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000001434 114.0
LYD2_k127_5871496_0 Molecular chaperone. Has ATPase activity K04079 - - 7.717e-290 902.0
LYD2_k127_5871496_1 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 356.0
LYD2_k127_5871496_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 342.0
LYD2_k127_5871496_3 Histone methylation protein DOT1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002791 256.0
LYD2_k127_5871496_4 Belongs to the HAD-like hydrolase superfamily. PhnX family K05306 - 3.11.1.1 0.000000000000000000000000000000000001722 139.0
LYD2_k127_5871496_5 Protein of unknown function (DUF2721) - - - 0.0000000000000000000000000002157 122.0
LYD2_k127_5871496_6 NnrU protein - - - 0.0000000000000000000000000003886 125.0
LYD2_k127_5885235_0 PFAM Glycoside hydrolase 15-related - - - 1.195e-261 818.0
LYD2_k127_5885235_1 Belongs to the glutaminase family K01425 - 3.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000002318 265.0
LYD2_k127_5897168_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 5.647e-197 629.0
LYD2_k127_5897168_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000982 504.0
LYD2_k127_5897168_2 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002978 425.0
LYD2_k127_5913913_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 2.377e-298 941.0
LYD2_k127_5913913_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 415.0
LYD2_k127_5913913_2 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000407 392.0
LYD2_k127_5913913_3 PFAM 2Fe-2S -binding - - - 0.0000000000000000000000000000000000000000000000000000000003447 209.0
LYD2_k127_5913913_4 Belongs to the Nudix hydrolase family. NudC subfamily K03426 - 3.6.1.22 0.0000000000000000000000000000000000002597 156.0
LYD2_k127_5956852_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 447.0
LYD2_k127_5956852_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 434.0
LYD2_k127_5956852_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 382.0
LYD2_k127_5956852_3 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 336.0
LYD2_k127_5956852_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000157 136.0
LYD2_k127_5956852_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000002527 133.0
LYD2_k127_5956852_6 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000009065 104.0
LYD2_k127_5969018_0 Indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 2.287e-266 830.0
LYD2_k127_5969018_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 532.0
LYD2_k127_5969018_2 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005668 314.0
LYD2_k127_5969018_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000247 114.0
LYD2_k127_5969731_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007205 497.0
LYD2_k127_5969731_1 transcriptional regulator, XRE family - - - 0.00000000000000000000000000000000000000000002091 165.0
LYD2_k127_5972812_0 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 445.0
LYD2_k127_5972812_1 LysR family transcription regulator protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004134 265.0
LYD2_k127_5972812_2 Bacterial extracellular solute-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000002669 232.0
LYD2_k127_5972812_3 - - - - 0.00000000000000000000000000000007142 128.0
LYD2_k127_5972812_4 Methyltransferase domain - - - 0.0000000000000000000000000005141 114.0
LYD2_k127_5973129_0 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 523.0
LYD2_k127_5973129_1 abc transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 490.0
LYD2_k127_5973129_2 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 317.0
LYD2_k127_5973129_3 Extracellular liganD-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003808 263.0
LYD2_k127_5973129_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000001279 216.0
LYD2_k127_5973129_5 Hemerythrin HHE cation binding - - - 0.00000000000000000000000000000000000000000000000001373 188.0
LYD2_k127_5974975_0 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 604.0
LYD2_k127_5974975_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 394.0
LYD2_k127_5974975_2 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009447 337.0
LYD2_k127_5974975_3 Bacterial periplasmic substrate-binding proteins K02030,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007436 298.0
LYD2_k127_5974975_4 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000000000000000007281 186.0
LYD2_k127_5975136_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 465.0
LYD2_k127_5975136_1 With different specificities (related to short-chain alcohol - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000195 273.0
LYD2_k127_5975136_2 MaoC like domain K17865 - 4.2.1.55 0.0000000000000000000000000000000001281 137.0
LYD2_k127_5982132_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 469.0
LYD2_k127_5982132_1 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000001001 194.0
LYD2_k127_5982132_2 Pfam:DUF989 - - - 0.00000000000000000000000000000000000002258 145.0
LYD2_k127_5982350_0 TIGRFAM malate synthase A K01638 - 2.3.3.9 1.489e-257 802.0
LYD2_k127_5982350_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 2.933e-228 720.0
LYD2_k127_5982350_2 choline dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008615 470.0
LYD2_k127_5982350_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005377 450.0
LYD2_k127_5982350_4 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 327.0
LYD2_k127_5982350_5 epimerase K10714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008147 314.0
LYD2_k127_5982350_6 GtrA-like protein - - - 0.00000000000000000003115 98.0
LYD2_k127_5982350_7 protein-glutamate methylesterase activity K00575,K03412,K03413,K13924 - 2.1.1.80,3.1.1.61,3.5.1.44 0.0000000000000000001652 94.0
LYD2_k127_5988568_0 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007793 374.0
LYD2_k127_5988568_1 4Fe-4S binding domain K18362 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 361.0
LYD2_k127_5988568_2 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001983 244.0
LYD2_k127_5988568_3 DMSO reductase anchor subunit (DmsC) K18363 - - 0.0000000000000000000000000000000000000000000000000000008103 205.0
LYD2_k127_5988568_4 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000000000001879 132.0
LYD2_k127_5988568_5 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 0.0000000000000002395 79.0
LYD2_k127_5988568_6 Hemerythrin HHE cation binding domain - - - 0.00000001095 63.0
LYD2_k127_6024397_0 Transcriptional regulator K03603,K05799 - - 1.748e-272 865.0
LYD2_k127_6024397_1 Uncharacterized protein family UPF0004 K06168 - 2.8.4.3 1.564e-203 649.0
LYD2_k127_6024397_2 PhoH-like phosphate starvation-inducible protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005181 454.0
LYD2_k127_6024397_3 TonB dependent receptor K16092 - - 0.0000000000000000000000000000000000000675 149.0
LYD2_k127_6024397_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000002905 99.0
LYD2_k127_6029229_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 348.0
LYD2_k127_6029229_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006586 274.0
LYD2_k127_6029229_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000001743 222.0
LYD2_k127_6050818_0 CoA binding domain - - - 1.314e-300 936.0
LYD2_k127_6050818_1 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 4.075e-205 649.0
LYD2_k127_6050818_2 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 488.0
LYD2_k127_6050818_3 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000000000000000000000000000000000000000000007829 205.0
LYD2_k127_6050818_4 Bacterial PH domain - - - 0.00000000000000000000000000000000000000000000000000000000008845 208.0
LYD2_k127_6050818_5 Thioesterase - - - 0.000000000000000000000000000000000000000000000000000000000585 204.0
LYD2_k127_6050818_6 - - - - 0.0000000000000000000000000000000000000000000000000003695 192.0
LYD2_k127_6050818_7 Transcriptional regulator - - - 0.00000000000000000000000000000000000004754 147.0
LYD2_k127_6050818_8 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000001502 102.0
LYD2_k127_609607_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006 415.0
LYD2_k127_609607_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 400.0
LYD2_k127_609607_2 Transcriptional regulator, LysR family K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 353.0
LYD2_k127_609607_3 Short-chain dehydrogenase reductase sdr K00059 - 1.1.1.100 0.00000000000009223 78.0
LYD2_k127_6101871_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 573.0
LYD2_k127_6101871_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 522.0
LYD2_k127_6101871_2 RND efflux system, outer membrane lipoprotein, NodT - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 482.0
LYD2_k127_6101871_3 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 426.0
LYD2_k127_6101871_4 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 389.0
LYD2_k127_6101871_5 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 366.0
LYD2_k127_6101871_6 LTXXQ motif family protein - - - 0.0001166 53.0
LYD2_k127_613513_0 Reductase C-terminal K05297 - 1.18.1.1 6.835e-203 646.0
LYD2_k127_613513_1 overlaps another CDS with the same product name - - - 0.000000000000000000000000000000000000000000000000000000000000000000002165 242.0
LYD2_k127_613513_2 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000001064 211.0
LYD2_k127_613513_3 overlaps another CDS with the same product name - - - 0.0000000000000000000000000000000000000000000002352 180.0
LYD2_k127_6229510_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 494.0
LYD2_k127_6229510_1 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000382 163.0
LYD2_k127_6305361_0 COG3170 Tfp pilus assembly protein FimV K08086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005098 266.0
LYD2_k127_6305361_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000143 216.0
LYD2_k127_637462_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 354.0
LYD2_k127_637462_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001046 273.0
LYD2_k127_637462_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000001844 239.0
LYD2_k127_639158_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 9.444e-199 626.0
LYD2_k127_639158_1 Ribonuclease K01167 - 3.1.27.3 0.0000000000000000000000000000000000003639 144.0
LYD2_k127_639158_2 Barstar (barnase inhibitor) - - - 0.0000000005547 64.0
LYD2_k127_647817_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 6.136e-209 660.0
LYD2_k127_647817_1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K16872 - 2.3.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 544.0
LYD2_k127_647817_2 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 486.0
LYD2_k127_647817_3 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006723 355.0
LYD2_k127_647817_4 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000001952 223.0
LYD2_k127_658379_0 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 312.0
LYD2_k127_658379_1 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
LYD2_k127_658379_2 Methylmalonyl-CoA mutase K01848 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000001503 252.0
LYD2_k127_658379_3 B12 binding domain K01849 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0036094,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564 5.4.99.2 0.00000000000000000000000000000000000000000000000003984 181.0
LYD2_k127_658379_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000007775 184.0
LYD2_k127_665167_0 branched-chain amino acid K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007919 550.0
LYD2_k127_665167_1 Ion transport protein - - - 0.00000000000000000000000000000000000000000004878 174.0
LYD2_k127_665167_2 Beta/Gamma crystallin - - - 0.0000000000000000972 80.0
LYD2_k127_665167_3 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.0000000000000001806 87.0
LYD2_k127_670066_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.26e-253 804.0
LYD2_k127_670066_1 Participates in both transcription termination and antitermination K02600 - - 0.00000002248 56.0
LYD2_k127_684115_0 ABC transporter K02056 - 3.6.3.17 2.553e-212 681.0
LYD2_k127_684115_1 Branched-chain amino acid transport system / permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 462.0
LYD2_k127_684115_2 xanthine dehydrogenase accessory protein XdhC K07402 - - 0.0000000000000000000000000000000000000000000004908 172.0
LYD2_k127_684115_3 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000008341 130.0
LYD2_k127_685652_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 413.0
LYD2_k127_685652_1 ABC transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008482 346.0
LYD2_k127_685652_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001191 256.0
LYD2_k127_685652_3 Periplasmic binding protein domain K01999 - - 0.000000000000000000000000000004986 123.0
LYD2_k127_685652_4 abc transporter K01996 - - 0.000000000000000001058 87.0
LYD2_k127_687012_0 Belongs to the TPP enzyme family K03852 - 2.3.3.15 2.49e-274 853.0
LYD2_k127_687012_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 370.0
LYD2_k127_688008_0 Glycosyl transferase, family 2 K00721,K07011,K12990,K14597,K16555,K21349 - 2.4.1.268,2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 494.0
LYD2_k127_688008_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006561 302.0
LYD2_k127_688008_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000007296 181.0
LYD2_k127_688008_4 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000005407 104.0
LYD2_k127_688167_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 472.0
LYD2_k127_688167_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005957 370.0
LYD2_k127_688167_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006452 334.0
LYD2_k127_688167_3 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001575 275.0
LYD2_k127_688167_4 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000314 229.0
LYD2_k127_688167_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000002992 203.0
LYD2_k127_688167_6 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000004915 174.0
LYD2_k127_691376_0 ABC-type sugar transport system periplasmic component K02027,K05813 - - 7.456e-217 679.0
LYD2_k127_691376_1 ABC-type sugar transport systems permease components K02025,K05814,K10118,K17242,K17245 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007312 444.0
LYD2_k127_691376_2 PFAM binding-protein-dependent transport systems inner membrane component K02026,K05815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005701 435.0
LYD2_k127_691376_3 glycosyl transferase family 2 K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 381.0
LYD2_k127_691376_4 Belongs to the ABC transporter superfamily K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 369.0
LYD2_k127_691376_5 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000226 268.0
LYD2_k127_691376_6 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000002668 226.0
LYD2_k127_692539_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 556.0
LYD2_k127_692539_1 Glycine-zipper domain - - - 0.0000000000000000000001949 100.0
LYD2_k127_69522_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 594.0
LYD2_k127_69522_1 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000693 422.0
LYD2_k127_69522_2 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000001448 116.0
LYD2_k127_69522_3 helix_turn_helix, arabinose operon control protein - - - 0.0000000625 63.0
LYD2_k127_701296_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008867 308.0
LYD2_k127_701296_1 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.0000000000000000000000000000000000000007589 154.0
LYD2_k127_701296_2 EamA-like transporter family - - - 0.000000000208 63.0
LYD2_k127_709101_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 388.0
LYD2_k127_709101_1 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 367.0
LYD2_k127_709101_2 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 343.0
LYD2_k127_709101_3 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 335.0
LYD2_k127_709101_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009227 289.0
LYD2_k127_709101_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000427 89.0
LYD2_k127_710607_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.829e-312 972.0
LYD2_k127_710607_1 dihydroorotase K01465 - 3.5.2.3 4.117e-198 625.0
LYD2_k127_710607_10 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000008069 147.0
LYD2_k127_710607_2 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 569.0
LYD2_k127_710607_3 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 511.0
LYD2_k127_710607_4 COG0643 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 429.0
LYD2_k127_710607_5 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 364.0
LYD2_k127_710607_6 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 339.0
LYD2_k127_710607_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009775 299.0
LYD2_k127_710607_8 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004882 263.0
LYD2_k127_710607_9 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000008274 183.0
LYD2_k127_715311_0 Aminoglycoside phosphotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 502.0
LYD2_k127_715311_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000001919 142.0
LYD2_k127_715311_2 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000005217 134.0
LYD2_k127_728586_0 regulation of DNA-templated transcription, elongation - - - 3.568e-280 882.0
LYD2_k127_728586_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000002595 70.0
LYD2_k127_73014_0 Methylmalonyl-CoA mutase large subunit K01847 - 5.4.99.2 0.0 1155.0
LYD2_k127_73014_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 3.359e-253 785.0
LYD2_k127_73014_2 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 410.0
LYD2_k127_73014_3 Belongs to the glycerate kinase type-1 family K00865 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008038 396.0
LYD2_k127_73014_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007232 317.0
LYD2_k127_731490_0 NMT1-like family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 457.0
LYD2_k127_731490_1 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 427.0
LYD2_k127_731490_2 ABC transporter K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 386.0
LYD2_k127_731490_3 Binding-protein-dependent transport system inner membrane component K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000366 274.0
LYD2_k127_731490_4 ABC-type proline glycine betaine transport K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009093 261.0
LYD2_k127_7382_0 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 512.0
LYD2_k127_7382_1 sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005896 456.0
LYD2_k127_7382_2 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005963 368.0
LYD2_k127_7382_3 Carbohydrate transport and metabolism K21395 - - 0.000000000000000000000003244 107.0
LYD2_k127_749772_0 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 468.0
LYD2_k127_749772_1 Pfam Glycosyl transferase family 2 K10012 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 427.0
LYD2_k127_749772_2 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 346.0
LYD2_k127_749772_3 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 363.0
LYD2_k127_749772_4 PFAM glycosyl transferase family 39 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 296.0
LYD2_k127_749772_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000005856 167.0
LYD2_k127_749772_6 Small multidrug resistance - - - 0.00000000000000000000000000000001618 134.0
LYD2_k127_749772_7 protein homotetramerization - - - 0.000000000000000000000002673 119.0
LYD2_k127_757531_0 PFAM Protein kinase K11912,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 333.0
LYD2_k127_757531_1 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006857 313.0
LYD2_k127_75827_0 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0 1270.0
LYD2_k127_75827_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006193 590.0
LYD2_k127_75827_2 Steryl acetyl hydrolase K14731 - 3.1.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001569 282.0
LYD2_k127_75827_3 Protein of unknown function (DUF456) K09793 - - 0.0000000000000000000000000000000000000000000000001183 182.0
LYD2_k127_75827_4 - - - - 0.00000000000000000000000000000000000000005207 164.0
LYD2_k127_75827_5 - - - - 0.0000000000000000000000000000000000006063 147.0
LYD2_k127_75827_6 2-Nitropropane dioxygenase - - - 0.000000000000003436 78.0
LYD2_k127_75827_7 Glycoside hydrolase 15-related - - - 0.000000000000003698 77.0
LYD2_k127_75827_8 PFAM NUDIX hydrolase K07455 - - 0.000001522 51.0
LYD2_k127_75827_9 Major Facilitator Superfamily - - - 0.0002559 44.0
LYD2_k127_760830_0 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004626 537.0
LYD2_k127_760830_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 350.0
LYD2_k127_760830_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001322 289.0
LYD2_k127_77611_0 Cobalamin-independent synthase, Catalytic domain K00549,K22363 - 2.1.1.14,4.4.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 506.0
LYD2_k127_77611_1 TIGRFAM type VI secretion system FHA domain protein K07169,K11913 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 301.0
LYD2_k127_77611_2 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000005542 283.0
LYD2_k127_77611_3 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000001796 263.0
LYD2_k127_77611_4 Sulfate permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000006732 249.0
LYD2_k127_77611_5 TIGRFAM type VI secretion system FHA domain protein K07169,K11913 - - 0.000000000000000000000000000000000000000000000000002277 199.0
LYD2_k127_77611_6 Cold-shock DNA-binding domain protein K03704 - - 0.0000000000000000000000000000000001211 132.0
LYD2_k127_79858_0 abc transporter K06020 - 3.6.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 377.0
LYD2_k127_79858_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000002109 267.0
LYD2_k127_803708_0 Type IV pilus biogenesis protein K02454 - - 9.048e-223 705.0
LYD2_k127_803708_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 567.0
LYD2_k127_803708_2 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 419.0
LYD2_k127_803708_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 332.0
LYD2_k127_803708_4 Cation efflux family K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005846 275.0
LYD2_k127_803708_5 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000001047 222.0
LYD2_k127_803708_6 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000001984 200.0
LYD2_k127_803708_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000002769 181.0
LYD2_k127_803708_8 Domain of unknown function (DUF1841) - - - 0.00000000000000000000004889 99.0
LYD2_k127_803708_9 dienelactone hydrolase - - - 0.00000489 59.0
LYD2_k127_805801_0 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004907 587.0
LYD2_k127_805801_1 Taurine dioxygenase K03119 - 1.14.11.17 0.000000000000000000000000000000000000000000000000000000000000000001196 238.0
LYD2_k127_816666_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 616.0
LYD2_k127_816666_1 surface antigen variable number repeat protein K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007211 572.0
LYD2_k127_816666_2 fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 538.0
LYD2_k127_816666_3 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 435.0
LYD2_k127_816666_4 belongs to the aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 394.0
LYD2_k127_816666_5 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 339.0
LYD2_k127_816666_6 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002274 255.0
LYD2_k127_816666_7 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000388 157.0
LYD2_k127_816666_8 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000005935 148.0
LYD2_k127_816996_0 Belongs to the glycosyl hydrolase 31 family K01811 GO:0003674,GO:0003824,GO:0004553,GO:0005488,GO:0005515,GO:0016787,GO:0016798,GO:0042802,GO:0080176 3.2.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 475.0
LYD2_k127_816996_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 349.0
LYD2_k127_816996_2 ATPase (AAA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001255 254.0
LYD2_k127_816996_3 AzlC protein - - - 0.00000000000000000000000000000000000000000000000001297 189.0
LYD2_k127_816996_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000133 172.0
LYD2_k127_816996_5 Branched-chain amino acid transport protein (AzlD) - - - 0.0000000000000002672 91.0
LYD2_k127_83884_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 2.695e-205 650.0
LYD2_k127_83884_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 385.0
LYD2_k127_83884_10 - - - - 0.0000000000000625 81.0
LYD2_k127_83884_11 Nucleoside-diphosphate-sugar epimerases - - - 0.0007461 50.0
LYD2_k127_83884_2 Permease, YjgP YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 346.0
LYD2_k127_83884_3 Permease, YjgP YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009912 308.0
LYD2_k127_83884_4 PFAM alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 292.0
LYD2_k127_83884_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000000000000002168 175.0
LYD2_k127_83884_6 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000003391 137.0
LYD2_k127_83884_7 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.000000000000000000000000000001381 131.0
LYD2_k127_83884_8 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000004591 89.0
LYD2_k127_83884_9 Glycine-zipper domain - - - 0.00000000000000003176 85.0
LYD2_k127_839441_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 2.645e-240 752.0
LYD2_k127_839441_1 Methyl-accepting chemotaxis protein K02660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005015 615.0
LYD2_k127_839441_2 Histidine kinase K02487,K06596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007895 616.0
LYD2_k127_839441_3 cheY-homologous receiver domain K02657 - - 0.000000000000000000000000000000000000000000000000000000000000001517 220.0
LYD2_k127_839441_4 response regulator receiver K02658 - - 0.000000000000000000000000000000000000000000000000001299 186.0
LYD2_k127_839441_5 Chemotaxis signal transduction protein K02659 - - 0.0000000000000000000000000000000000002872 146.0
LYD2_k127_846853_0 FtsX-like permease family K02004 - - 1.41e-251 801.0
LYD2_k127_846853_1 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 593.0
LYD2_k127_846853_2 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000005706 267.0
LYD2_k127_846853_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001298 259.0
LYD2_k127_846853_4 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000004438 193.0
LYD2_k127_849436_0 PFAM binding-protein-dependent transport systems inner membrane component K02011 - - 8.028e-261 813.0
LYD2_k127_849436_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02017,K02052 - 3.6.3.29,3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 519.0
LYD2_k127_849436_2 ABC-type Fe3 transport system, periplasmic K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000116 258.0
LYD2_k127_849436_3 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.0000000000000000000000000000000000000000000008362 182.0
LYD2_k127_862855_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0 1064.0
LYD2_k127_862855_1 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 1.188e-287 894.0
LYD2_k127_862855_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 1.44e-202 639.0
LYD2_k127_862855_3 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008943 410.0
LYD2_k127_862855_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 380.0
LYD2_k127_862855_5 O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 356.0
LYD2_k127_862855_6 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 297.0
LYD2_k127_865266_0 FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 367.0
LYD2_k127_865266_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002014 296.0
LYD2_k127_875724_0 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 369.0
LYD2_k127_875724_1 TonB dependent receptor K02014 - - 0.000000000000000000000000000000006268 132.0
LYD2_k127_875724_2 TonB dependent receptor - - - 0.00009573 49.0
LYD2_k127_878511_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001928 435.0
LYD2_k127_878511_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007623 407.0
LYD2_k127_889519_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 3.464e-257 804.0
LYD2_k127_889519_1 Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000000000000000000006558 185.0
LYD2_k127_889519_2 membrane - - - 0.00000000000000000000001339 106.0
LYD2_k127_889519_3 Bacterial protein of unknown function (DUF883) - - - 0.0000000000000000000007014 101.0
LYD2_k127_889519_4 membrane - - - 0.0000000000001647 76.0
LYD2_k127_889519_5 Major Facilitator Superfamily - - - 0.0009151 50.0
LYD2_k127_894285_0 ERAP1-like C-terminal domain K01256 - 3.4.11.2 2.849e-295 930.0
LYD2_k127_894285_1 Disulphide bond corrector protein DsbC K04084,K08344 - 1.8.1.8 8.824e-271 851.0
LYD2_k127_894285_2 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 283.0
LYD2_k127_894285_3 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000004394 134.0
LYD2_k127_894285_4 Uncharacterized protein family UPF0016 - - - 0.000000000000000126 82.0
LYD2_k127_909644_0 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006537 283.0
LYD2_k127_909644_1 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001888 246.0
LYD2_k127_909644_2 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000000000000001738 244.0
LYD2_k127_909644_3 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000000000000000000000001535 213.0
LYD2_k127_909644_4 Endoribonuclease L-PSP K04782 - 4.2.99.21 0.0000000000000000000000000000000000000000000017 172.0
LYD2_k127_909644_5 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000000000002844 160.0
LYD2_k127_909644_6 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000000000000000000000000000000002246 134.0
LYD2_k127_912308_0 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 304.0
LYD2_k127_912308_1 response regulator K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001428 284.0
LYD2_k127_927087_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 574.0
LYD2_k127_927087_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 540.0
LYD2_k127_927087_2 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 535.0
LYD2_k127_932047_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 3.46e-217 687.0
LYD2_k127_932047_1 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006848 596.0
LYD2_k127_950935_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 1.152e-202 646.0
LYD2_k127_950935_1 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 600.0
LYD2_k127_950935_2 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 380.0
LYD2_k127_950935_3 - - - - 0.0000000000000001708 87.0
LYD2_k127_950935_4 SGNH hydrolase-like domain, acetyltransferase AlgX - - - 0.000001036 51.0
LYD2_k127_953432_0 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 1.19e-299 935.0
LYD2_k127_953432_1 Acyl-CoA dehydrogenase, C-terminal domain K09456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 538.0
LYD2_k127_953432_10 cytochrome K08738 - - 0.00000032 61.0
LYD2_k127_953432_2 cytochrome c-type protein K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001478 267.0
LYD2_k127_953432_3 cytochrome c5 - - - 0.000000000000000000000000000000000000000000000000001207 191.0
LYD2_k127_953432_4 Predicted membrane protein (DUF2127) - - - 0.000000000000000000000000000000000000000000000000002261 190.0
LYD2_k127_953432_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000003059 180.0
LYD2_k127_953432_6 PFAM cytochrome c class I K08738 - - 0.000000000000000000000001496 113.0
LYD2_k127_953432_7 Pfam cytochrome c K08738 - - 0.000000000000000000001732 97.0
LYD2_k127_953432_8 GAF domain - - - 0.000000000000000000006441 97.0
LYD2_k127_953432_9 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 - 1.6.5.8 0.000000002124 62.0
LYD2_k127_954871_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006568 420.0
LYD2_k127_954871_1 topoisomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 420.0
LYD2_k127_954871_2 - - - - 0.00009331 53.0
LYD2_k127_956661_0 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 445.0
LYD2_k127_956661_1 PFAM Alcohol dehydrogenase GroES domain protein - - - 0.0000000000000000000000000004615 121.0
LYD2_k127_956661_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 0.0000000006665 59.0
LYD2_k127_958017_0 Aldehyde dehydrogenase family K04072,K13922 - 1.1.1.1,1.2.1.10,1.2.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008782 524.0
LYD2_k127_958017_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 381.0
LYD2_k127_958017_2 helix_turn_helix isocitrate lyase regulation K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000000007449 245.0
LYD2_k127_958017_3 Xylose isomerase - - - 0.00000000000000000000000000000001913 141.0
LYD2_k127_95832_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 564.0
LYD2_k127_95832_1 Transmembrane secretion effector - - - 0.00000000000000000002499 98.0
LYD2_k127_97325_0 PFAM ATP-binding region ATPase domain protein K07645 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 434.0
LYD2_k127_97325_1 PFAM response regulator receiver K02483,K07666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009138 297.0
LYD2_k127_97325_2 p-type atpase - - - 0.00000000000000000000000000000000000000000000000000000000000000004455 231.0
LYD2_k127_984286_0 Protein of unknown function (DUF3141) - - - 5e-324 1011.0
LYD2_k127_984286_1 phosphate K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 502.0
LYD2_k127_984286_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000001539 184.0
LYD2_k127_984286_3 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000077 179.0
LYD2_k127_984286_4 Protein of unknown function (DUF3302) - - - 0.000000000000000000000000000000000002259 148.0
LYD2_k127_996502_0 Aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009321 593.0
LYD2_k127_996502_1 hmm pf00005 K06147,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 323.0
LYD2_k127_996502_2 PFAM MAPEG family K00799 GO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016740,GO:0016765,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 2.5.1.18 0.00000000000000000000000000000000000000007724 156.0