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Overview

ID MAG02043
Name LYD2_bin.19
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Thermoanaerobaculia
Order UBA5066
Family Gp7-AA6
Genus DAHUXD01
Species
Assembly information
Completeness (%) 74.71
Contamination (%) 0.99
GC content (%) 70.0
N50 (bp) 8,312
Genome size (bp) 2,842,923

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2535

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1011090_0 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000582 468.0
LYD2_k127_1011090_1 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009733 243.0
LYD2_k127_1011090_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000000000000000000000001784 164.0
LYD2_k127_1011090_3 RF-1 domain K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031326,GO:0032268,GO:0032984,GO:0034248,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0000000000000000000000000006853 126.0
LYD2_k127_1011090_5 Belongs to the peptidase S8 family K11016 - - 0.000000000000000007294 99.0
LYD2_k127_1011090_6 - - - - 0.000000004105 70.0
LYD2_k127_1065548_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 477.0
LYD2_k127_1065548_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000003471 67.0
LYD2_k127_1077338_0 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 566.0
LYD2_k127_1077338_1 Beta-lactamase class C and other penicillin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 353.0
LYD2_k127_1077338_10 ester cyclase - - - 0.0000000000000000000000000000000178 141.0
LYD2_k127_1077338_11 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000002263 112.0
LYD2_k127_1077338_12 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000000003027 114.0
LYD2_k127_1077338_13 Protein of unknown function (DUF1761) - - - 0.0000000000003084 75.0
LYD2_k127_1077338_14 Cupin 2, conserved barrel domain protein - - - 0.00000002771 59.0
LYD2_k127_1077338_2 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009491 334.0
LYD2_k127_1077338_3 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 302.0
LYD2_k127_1077338_4 protein homotetramerization - GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005267,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015318,GO:0015672,GO:0016043,GO:0022607,GO:0022803,GO:0022838,GO:0022840,GO:0022841,GO:0022842,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0043933,GO:0044085,GO:0046873,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055085,GO:0065003,GO:0071804,GO:0071805,GO:0071840,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000009001 206.0
LYD2_k127_1077338_5 - - - - 0.0000000000000000000000000000000000000000000000000000003373 205.0
LYD2_k127_1077338_6 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000000000000000000000000000000000000000000000343 201.0
LYD2_k127_1077338_7 transferase activity, transferring acyl groups - - - 0.0000000000000000000000000000000000000000000000000001245 202.0
LYD2_k127_1077338_8 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.00000000000000000000000000000000000000000000000005767 194.0
LYD2_k127_1077338_9 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000007015 151.0
LYD2_k127_108648_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006824 296.0
LYD2_k127_108648_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000005679 178.0
LYD2_k127_108648_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000002554 100.0
LYD2_k127_108648_3 cell adhesion - - - 0.0000000000000003919 87.0
LYD2_k127_108648_4 Domain of unknown function (DUF4131) K02238 - - 0.00000000000000875 88.0
LYD2_k127_108648_5 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000005593 55.0
LYD2_k127_1128554_0 Dehydrogenase E1 component K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 607.0
LYD2_k127_1128554_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00244,K00278 GO:0000166,GO:0001716,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008734,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0015922,GO:0016491,GO:0016638,GO:0016641,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044318,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605 1.3.5.4,1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 608.0
LYD2_k127_1128554_2 peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 554.0
LYD2_k127_1128554_3 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 446.0
LYD2_k127_1128554_4 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000134 268.0
LYD2_k127_1128554_5 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 0.0000000000000000000000000000000000000000000000000000000000000003403 230.0
LYD2_k127_1146329_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008261 367.0
LYD2_k127_1146329_1 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 315.0
LYD2_k127_1146329_2 pfam mofrl K11529 - 2.7.1.165 0.000000000000000000000000001665 119.0
LYD2_k127_118108_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 346.0
LYD2_k127_118108_1 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.000000000000000000000000009474 123.0
LYD2_k127_118409_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 1.62e-226 730.0
LYD2_k127_118409_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000725 391.0
LYD2_k127_118409_2 esterase - - - 0.000000000000000000000000000000000000000000000000000000000000004557 228.0
LYD2_k127_1193088_0 Belongs to the MurCDEF family K01924 GO:0000166,GO:0000270,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008763,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0035639,GO:0036094,GO:0042546,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0046872,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 480.0
LYD2_k127_1193088_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 GO:0000166,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0017076,GO:0030554,GO:0032153,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 436.0
LYD2_k127_1193088_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0051301,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 380.0
LYD2_k127_1193088_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008764,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006804 301.0
LYD2_k127_1193088_4 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000714 297.0
LYD2_k127_1193088_5 Glycosyltransferase family 28 N-terminal domain K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000002124 249.0
LYD2_k127_1193088_6 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.0000004624 60.0
LYD2_k127_120131_0 surface antigen variable number - - - 0.00000000000000000000000000000000000000000000000000000000003625 234.0
LYD2_k127_120131_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000009806 220.0
LYD2_k127_120131_2 Regulatory protein, FmdB family - - - 0.0000000000000000001012 90.0
LYD2_k127_120131_3 transferase activity, transferring glycosyl groups - - - 0.00000000000000003753 88.0
LYD2_k127_124936_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 351.0
LYD2_k127_124936_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000001052 232.0
LYD2_k127_124936_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000006076 98.0
LYD2_k127_1269479_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 374.0
LYD2_k127_1269479_1 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 338.0
LYD2_k127_1269479_2 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000001598 271.0
LYD2_k127_1269479_3 Aldose 1-epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004168 282.0
LYD2_k127_1269479_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003652 255.0
LYD2_k127_1269479_5 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000001749 116.0
LYD2_k127_1269479_6 - - - - 0.00000000000000002784 89.0
LYD2_k127_1270931_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 506.0
LYD2_k127_1270931_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009675 402.0
LYD2_k127_1270931_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000001571 205.0
LYD2_k127_1270931_3 PFAM GCN5-related N-acetyltransferase - - - 0.000000000004048 69.0
LYD2_k127_1271828_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 3.215e-302 944.0
LYD2_k127_1271828_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 5.652e-262 836.0
LYD2_k127_1271828_10 Involved in the tonB-independent uptake of proteins - - - 0.0000001722 53.0
LYD2_k127_1271828_2 Hydrogenase formation hypA family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 473.0
LYD2_k127_1271828_3 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K06282,K18008 - 1.12.2.1,1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 472.0
LYD2_k127_1271828_4 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 387.0
LYD2_k127_1271828_5 Domain of unknown function (DUF4405) - - - 0.00000000000000000000000000000000000000000000004295 194.0
LYD2_k127_1271828_6 Hydrogenase maturation protease K03605 - - 0.000000000000000000000000000000007722 135.0
LYD2_k127_1271828_7 carbon dioxide binding K04653,K04654 - - 0.000000000000000000000000005727 129.0
LYD2_k127_1271828_8 Thioesterase superfamily - - - 0.00000000000000000000000001267 115.0
LYD2_k127_1271828_9 permease K07243 - - 0.00000000000018 78.0
LYD2_k127_1282219_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 370.0
LYD2_k127_1282219_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 349.0
LYD2_k127_1282219_2 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000005642 248.0
LYD2_k127_1282219_3 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.0000000000000000000000000000000000000000000000000000000000000000356 248.0
LYD2_k127_1282219_4 PFAM MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000654 210.0
LYD2_k127_1282219_5 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000004038 151.0
LYD2_k127_1282219_6 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.000000000000000000000000001961 116.0
LYD2_k127_1282219_7 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000000000004153 120.0
LYD2_k127_1282219_8 TonB C terminal K03646,K03832 - - 0.00000000007153 72.0
LYD2_k127_1282219_9 Ribosomal protein S20 K02968 - - 0.0000000002618 64.0
LYD2_k127_1284395_0 Insulinase (Peptidase family M16) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 649.0
LYD2_k127_1284395_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K21624 - 4.2.1.171 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 576.0
LYD2_k127_1284395_10 - K01992,K19341 - - 0.000000000000000000000000000000000525 150.0
LYD2_k127_1284395_11 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000006546 143.0
LYD2_k127_1284395_12 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.0000000000000000000000000000006029 141.0
LYD2_k127_1284395_13 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00001512 48.0
LYD2_k127_1284395_14 - - - - 0.00009004 55.0
LYD2_k127_1284395_2 Sulfite exporter TauE/SafE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006993 313.0
LYD2_k127_1284395_3 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007001 296.0
LYD2_k127_1284395_4 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000004847 221.0
LYD2_k127_1284395_5 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000004617 186.0
LYD2_k127_1284395_6 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000006487 184.0
LYD2_k127_1284395_7 aminopeptidase activity K01266 - 3.4.11.19 0.00000000000000000000000000000000000000003119 155.0
LYD2_k127_1284395_8 DinB superfamily - - - 0.00000000000000000000000000000000001536 143.0
LYD2_k127_1284395_9 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000003327 138.0
LYD2_k127_1294042_0 Sortilin, neurotensin receptor 3, - - - 6.523e-273 873.0
LYD2_k127_1294042_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 499.0
LYD2_k127_1294042_2 tetratricopeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 493.0
LYD2_k127_1294042_3 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 462.0
LYD2_k127_1294042_4 Amidohydrolase K07045 - - 0.00000002714 61.0
LYD2_k127_1294042_5 ketosteroid isomerase - - - 0.0001375 50.0
LYD2_k127_1295011_0 B12 binding domain - - - 3.871e-225 708.0
LYD2_k127_1295011_1 IgA Peptidase M64 - - - 8.938e-211 668.0
LYD2_k127_1295011_10 - - - - 0.00000000000000000009316 106.0
LYD2_k127_1295011_11 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000021 63.0
LYD2_k127_1295011_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 513.0
LYD2_k127_1295011_3 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004867 284.0
LYD2_k127_1295011_4 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000003837 250.0
LYD2_k127_1295011_5 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000000000001577 255.0
LYD2_k127_1295011_6 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000000000004933 218.0
LYD2_k127_1295011_7 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000004983 168.0
LYD2_k127_1295011_8 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000001543 166.0
LYD2_k127_1295011_9 Bacterial lipid A biosynthesis acyltransferase - - - 0.000000000000000000000000001474 128.0
LYD2_k127_1298313_0 COG1104 Cysteine sulfinate desulfinase cysteine desulfurase K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000007257 233.0
LYD2_k127_1298313_1 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000000000000004003 231.0
LYD2_k127_1298313_2 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000003462 152.0
LYD2_k127_1298313_3 Domain of Unknown Function (DUF748) - - - 0.00001041 48.0
LYD2_k127_1303446_0 AAA ATPase, central domain protein K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007036 487.0
LYD2_k127_1303446_1 Aminotransferase class-V K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000008604 165.0
LYD2_k127_1303446_2 CarD-like/TRCF domain K07736 - - 0.00000000000000000000000000000000002914 143.0
LYD2_k127_1303446_3 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000004023 85.0
LYD2_k127_1307568_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000000000000001 195.0
LYD2_k127_1307568_1 Glycosyl transferase family group 2 K07011 - - 0.000000000000000000000000000000000000000000002101 179.0
LYD2_k127_1307568_2 transferase activity, transferring glycosyl groups K13659 - 2.4.1.264 0.00000000000000000000000000000000000000005693 164.0
LYD2_k127_1307568_3 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000007233 166.0
LYD2_k127_1307568_4 Histidine kinase - - - 0.00000000000000000000000000001181 136.0
LYD2_k127_1307568_5 DNA polymerase III subunit delta K02341 - 2.7.7.7 0.000000000000000000000001498 119.0
LYD2_k127_1326524_0 Sodium/hydrogen exchanger family K03316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 535.0
LYD2_k127_1326524_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009017 430.0
LYD2_k127_1326524_2 PFAM FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 375.0
LYD2_k127_1326524_3 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 341.0
LYD2_k127_1326524_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002078 274.0
LYD2_k127_1326524_5 DinB superfamily - - - 0.000000000000000000000000000000000000000503 157.0
LYD2_k127_1326524_6 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000001352 134.0
LYD2_k127_1326524_7 Domain of unknown function (DUF4386) - - - 0.00000000002116 78.0
LYD2_k127_1328058_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000007043 238.0
LYD2_k127_1328058_1 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000001248 256.0
LYD2_k127_1328058_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000003538 196.0
LYD2_k127_1328058_3 Thioesterase K01075 - 3.1.2.23 0.000000000000000000000006182 105.0
LYD2_k127_1328058_4 - - - - 0.0000000000000003436 91.0
LYD2_k127_1328058_5 domain, Protein K20276 - - 0.0000000002455 75.0
LYD2_k127_1339697_0 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 439.0
LYD2_k127_1339697_1 Short-chain dehydrogenase reductase SDR K00076 - 1.1.1.159 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 353.0
LYD2_k127_1339697_2 DNA-templated transcription, initiation K02405 - - 0.0000009622 53.0
LYD2_k127_1356521_0 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 450.0
LYD2_k127_1356521_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 385.0
LYD2_k127_1356521_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 310.0
LYD2_k127_1356521_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000007579 168.0
LYD2_k127_1356521_4 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000005286 130.0
LYD2_k127_1356521_5 Peptidase family M50 K11749 - - 0.00000000002128 65.0
LYD2_k127_1356663_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.845e-227 730.0
LYD2_k127_1356663_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000669 261.0
LYD2_k127_1356663_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000556 100.0
LYD2_k127_1356663_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.00000000000000000004171 93.0
LYD2_k127_1360899_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 564.0
LYD2_k127_1360899_1 Tetratricopeptide repeat K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003539 503.0
LYD2_k127_1360899_10 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000002468 166.0
LYD2_k127_1360899_11 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000000000000000000004525 152.0
LYD2_k127_1360899_12 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000005448 149.0
LYD2_k127_1360899_13 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000002661 133.0
LYD2_k127_1360899_14 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000009429 141.0
LYD2_k127_1360899_15 Metallo-peptidase family M12 - - - 0.000000000000000000000000000009792 123.0
LYD2_k127_1360899_16 acetyltransferase - GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031248,GO:0031365,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234 - 0.00000000000000000000004124 101.0
LYD2_k127_1360899_17 6-phosphogluconolactonase activity - - - 0.00000002791 68.0
LYD2_k127_1360899_18 TIGRFAM outer membrane autotransporter barrel domain - - - 0.0006946 51.0
LYD2_k127_1360899_2 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000000001816 245.0
LYD2_k127_1360899_3 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.000000000000000000000000000000000000000000000000000000000000004566 245.0
LYD2_k127_1360899_4 Cadherin repeats. - - - 0.00000000000000000000000000000000000000000000000000000000000004131 243.0
LYD2_k127_1360899_5 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000001386 235.0
LYD2_k127_1360899_6 antibiotic catabolic process - - - 0.0000000000000000000000000000000000000000000000003786 200.0
LYD2_k127_1360899_7 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000001258 173.0
LYD2_k127_1360899_8 ECF sigma factor - - - 0.0000000000000000000000000000000000000005717 156.0
LYD2_k127_1360899_9 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000054 168.0
LYD2_k127_1374402_0 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit K01844 - 5.4.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 563.0
LYD2_k127_1374402_1 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000591 494.0
LYD2_k127_1374402_2 amino acid K03294,K13868 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007007 354.0
LYD2_k127_1374402_3 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007787 312.0
LYD2_k127_1374402_4 Dimerisation domain of d-ornithine 4,5-aminomutase K18011 - 5.4.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000006627 267.0
LYD2_k127_1374402_5 transglycosylase K08309 - - 0.0000000000000000000000000000000000000002095 156.0
LYD2_k127_1374402_6 Thioesterase superfamily K18014 - 4.3.1.14 0.0000000000000000000000000000000000000003809 165.0
LYD2_k127_1380583_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 407.0
LYD2_k127_1380583_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000003136 230.0
LYD2_k127_1380583_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000002658 227.0
LYD2_k127_1380583_3 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000001088 145.0
LYD2_k127_1380583_4 ABC transporter K02003 - - 0.0000000000000000000000000000000007597 131.0
LYD2_k127_1380583_5 Putative Fe-S cluster K00380 - 1.8.1.2 0.000000000000000000009408 100.0
LYD2_k127_1380583_6 - - - - 0.000000009197 68.0
LYD2_k127_1383887_0 GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007381 499.0
LYD2_k127_1495590_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 487.0
LYD2_k127_1495590_1 LAO AO transport system K07588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008915 319.0
LYD2_k127_1495590_2 IstB-like ATP binding protein K02315 - - 0.00000000000000000000000000000000000000000000000000002119 197.0
LYD2_k127_1495590_3 Stage II sporulation protein K06381 - - 0.00000000000000000000000000000000000000000000000000003698 215.0
LYD2_k127_1495590_4 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.000000000000000000000000000000000000435 158.0
LYD2_k127_1495590_5 - - - - 0.00000000000000000009783 91.0
LYD2_k127_1495590_6 - - - - 0.00000000000003343 83.0
LYD2_k127_1496394_0 Metallopeptidase family M24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001333 274.0
LYD2_k127_1496394_1 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000000000000000000508 181.0
LYD2_k127_1496394_2 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000002508 82.0
LYD2_k127_1496394_3 Bacillithiol biosynthesis BshC K22136 - - 0.00000000000001313 87.0
LYD2_k127_149816_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 416.0
LYD2_k127_149816_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 409.0
LYD2_k127_149816_10 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000007847 168.0
LYD2_k127_149816_11 Copper/zinc superoxide dismutase (SODC) K04565 - 1.15.1.1 0.00000000000000000000000000000000004626 152.0
LYD2_k127_149816_12 PFAM RNA recognition motif - - - 0.000000000000000000000000001198 117.0
LYD2_k127_149816_13 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000009808 120.0
LYD2_k127_149816_14 Metallo-beta-lactamase superfamily K05555 - - 0.000000000000000000009993 104.0
LYD2_k127_149816_15 DinB superfamily - - - 0.000000000000000003941 91.0
LYD2_k127_149816_16 Tellurite resistance protein TerB - - - 0.0000000000000000491 90.0
LYD2_k127_149816_17 2-oxoglutarate dehydrogenase C-terminal K00164 - 1.2.4.2 0.00000000000003521 77.0
LYD2_k127_149816_18 AraC-like ligand binding domain - - - 0.00001405 51.0
LYD2_k127_149816_2 PFAM Pyridoxal-dependent decarboxylase K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003374 394.0
LYD2_k127_149816_3 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001192 275.0
LYD2_k127_149816_4 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000009784 247.0
LYD2_k127_149816_5 PFAM response regulator receiver K07665 - - 0.0000000000000000000000000000000000000000000000000000000000001803 223.0
LYD2_k127_149816_6 Amino-transferase class IV K00824,K00826 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21,2.6.1.42 0.00000000000000000000000000000000000000000000000000000000001444 226.0
LYD2_k127_149816_7 Histidine kinase K07644 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000007469 204.0
LYD2_k127_149816_8 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000006439 200.0
LYD2_k127_149816_9 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000001282 188.0
LYD2_k127_1553656_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 517.0
LYD2_k127_1553656_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 364.0
LYD2_k127_1553656_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 329.0
LYD2_k127_1553656_3 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 287.0
LYD2_k127_1553656_4 fatty acid beta-oxidation using acyl-CoA dehydrogenase K03522 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001002 272.0
LYD2_k127_1553656_5 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000001349 235.0
LYD2_k127_1553656_6 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000001232 205.0
LYD2_k127_1553656_7 DNA methylase K07316 - 2.1.1.72 0.0000000000000000000000000000901 130.0
LYD2_k127_1553656_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000006318 115.0
LYD2_k127_1553656_9 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.0000000000000000000000004396 118.0
LYD2_k127_1566211_0 Sulfatase - - - 0.0 1008.0
LYD2_k127_1566211_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 476.0
LYD2_k127_1566211_10 - - - - 0.000001455 56.0
LYD2_k127_1566211_11 - - - - 0.000008543 58.0
LYD2_k127_1566211_2 Aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 474.0
LYD2_k127_1566211_3 Metal-dependent hydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 433.0
LYD2_k127_1566211_4 tryptophan 2,3-dioxygenase activity K00453,K03392 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11,4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 402.0
LYD2_k127_1566211_5 Predicted periplasmic protein (DUF2092) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005223 280.0
LYD2_k127_1566211_6 3-hydroxyanthranilic acid dioxygenase K00452 - 1.13.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000008401 259.0
LYD2_k127_1566211_7 Predicted periplasmic protein (DUF2092) - - - 0.000000000000000000000000000000000000000000008326 174.0
LYD2_k127_1566211_8 Translation initiation inhibitor, yjgF family K15067 - 3.5.99.5 0.0000000000000000000000000000000000007427 146.0
LYD2_k127_1566211_9 PFAM helix-turn-helix- domain containing protein AraC type K04033 - - 0.0000000000000000000000005302 117.0
LYD2_k127_1587645_0 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007336 593.0
LYD2_k127_1587645_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000001391 246.0
LYD2_k127_1587645_2 transport system, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000002504 215.0
LYD2_k127_1587645_3 transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000006867 174.0
LYD2_k127_1618997_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 531.0
LYD2_k127_1618997_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006824 364.0
LYD2_k127_1618997_2 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000000000000000000000000000000000000001111 236.0
LYD2_k127_1618997_3 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000004003 166.0
LYD2_k127_1618997_4 Peptidase family M28 - - - 0.0000000000000000000000000003016 118.0
LYD2_k127_1622882_0 oligopeptide transporter, OPT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 328.0
LYD2_k127_1622882_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 316.0
LYD2_k127_1622882_2 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000000000000000000000000000000000000000000000000000000006304 208.0
LYD2_k127_1622882_3 Phospholipase D. Active site motifs. - - - 0.000000000000000000000000000000000004221 139.0
LYD2_k127_1622882_4 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000000001983 143.0
LYD2_k127_1622882_5 Putative porin - - - 0.00000000001867 78.0
LYD2_k127_1622882_6 - - - - 0.0000002259 63.0
LYD2_k127_1627699_0 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002953 284.0
LYD2_k127_1627699_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000004053 209.0
LYD2_k127_1648841_0 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005556 376.0
LYD2_k127_1648841_1 Protein of unknown function (DUF1365) K00574,K09701 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001954 280.0
LYD2_k127_1648841_2 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.00000000000000000000000004169 123.0
LYD2_k127_1648841_3 membrane - - - 0.00000000000000000000005491 105.0
LYD2_k127_1648841_4 Protein of unknown function (DUF1475) - - - 0.000000000000000000006716 102.0
LYD2_k127_1648841_5 Flavin containing amine oxidoreductase K06954 - - 0.000000000000001058 77.0
LYD2_k127_1653160_0 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005511 362.0
LYD2_k127_1653160_1 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 344.0
LYD2_k127_1653160_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000005018 229.0
LYD2_k127_1653160_3 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000001587 174.0
LYD2_k127_1653160_4 cyclic nucleotide binding K10914 - - 0.000000000000000000000000000000000000408 148.0
LYD2_k127_1653160_5 CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.000000000000000000000000002138 126.0
LYD2_k127_1653160_6 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000001772 83.0
LYD2_k127_1653160_7 Glutaredoxin-like domain (DUF836) - - - 0.0000000003068 64.0
LYD2_k127_1669055_0 dna ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 423.0
LYD2_k127_1669055_1 PFAM ATP dependent DNA ligase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 421.0
LYD2_k127_1669055_10 Low affinity iron permease - - - 0.0000000000000000000000000000000000000000000412 166.0
LYD2_k127_1669055_11 FAD binding domain - - - 0.000000000000000000000000000000000000003955 165.0
LYD2_k127_1669055_12 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000001046 121.0
LYD2_k127_1669055_13 Predicted membrane protein (DUF2231) - - - 0.0000000000000000004686 98.0
LYD2_k127_1669055_14 Methyltransferase domain - - - 0.0000000000000001126 87.0
LYD2_k127_1669055_15 bacterial OsmY and nodulation domain K04065 - - 0.00000005533 65.0
LYD2_k127_1669055_16 Protein of unknown function (DUF1328) - - - 0.00005153 47.0
LYD2_k127_1669055_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008818 307.0
LYD2_k127_1669055_3 Iron/manganese superoxide dismutases, alpha-hairpin domain K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000052 286.0
LYD2_k127_1669055_4 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002405 273.0
LYD2_k127_1669055_5 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003204 251.0
LYD2_k127_1669055_6 lipoprotein localization to outer membrane K02004,K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004467 261.0
LYD2_k127_1669055_7 phosphoserine phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000003716 252.0
LYD2_k127_1669055_8 - - - - 0.0000000000000000000000000000000000000000000000000003122 210.0
LYD2_k127_1669055_9 Pyridoxamine 5'-phosphate oxidase K00275 - 1.4.3.5 0.00000000000000000000000000000000000000000000000001124 188.0
LYD2_k127_1672760_0 Protein of unknown function (DUF3604) - - - 6.011e-301 937.0
LYD2_k127_1672760_1 PPIC-type PPIASE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 314.0
LYD2_k127_1672760_2 HupE / UreJ protein - - - 0.000000000000000006256 89.0
LYD2_k127_167308_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 408.0
LYD2_k127_167308_1 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 359.0
LYD2_k127_167308_2 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007345 301.0
LYD2_k127_167308_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 304.0
LYD2_k127_167308_4 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008385 263.0
LYD2_k127_167308_5 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001241 263.0
LYD2_k127_167308_6 pfam abc K02065 - - 0.000000000000000000000000000000000000000000000000000000000000002258 238.0
LYD2_k127_167308_7 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000001114 241.0
LYD2_k127_169424_0 Peptidase family M13 K07386 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 612.0
LYD2_k127_169424_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009925 569.0
LYD2_k127_169424_2 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 589.0
LYD2_k127_169424_3 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 506.0
LYD2_k127_169424_4 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 393.0
LYD2_k127_169424_5 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 389.0
LYD2_k127_169424_6 Thermophilic metalloprotease (M29) - - - 0.000000000000000000000000000002527 138.0
LYD2_k127_1695432_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 323.0
LYD2_k127_1695432_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 336.0
LYD2_k127_1695432_2 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000962 183.0
LYD2_k127_1695432_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000002303 183.0
LYD2_k127_1695432_4 Methyltransferase domain - - - 0.00000000000000000000000000000000002858 147.0
LYD2_k127_169723_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007764 344.0
LYD2_k127_169723_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000008219 168.0
LYD2_k127_169723_2 Tfp pilus assembly protein - - - 0.00000028 59.0
LYD2_k127_169723_3 Tetratricopeptide repeat - - - 0.00004083 55.0
LYD2_k127_169723_4 Pilus assembly protein PilX K02673 - - 0.0005811 53.0
LYD2_k127_170941_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000002701 267.0
LYD2_k127_170941_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000002076 201.0
LYD2_k127_170941_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.00000000000000000000000473 117.0
LYD2_k127_170941_3 PFAM von Willebrand factor type A - - - 0.00000000000000000000006831 109.0
LYD2_k127_1711583_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 495.0
LYD2_k127_1711583_1 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 291.0
LYD2_k127_1711583_2 Acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571,K01960 - 4.1.1.3,6.4.1.1 0.0000000000000000000000000000000003128 142.0
LYD2_k127_1711583_3 ig-like, plexins, transcription factors - - - 0.0000000000000001558 93.0
LYD2_k127_1711583_4 Tetratricopeptide repeats - - - 0.000008888 57.0
LYD2_k127_1717230_0 choline dehydrogenase activity - - - 6.482e-251 801.0
LYD2_k127_1717230_1 transcription factor binding K15836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 396.0
LYD2_k127_1717230_2 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007153 304.0
LYD2_k127_1717230_3 Histidine kinase response regulator - - - 0.00000000000000000000000000000000000000000000000000001409 213.0
LYD2_k127_1717230_4 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000000000000001182 164.0
LYD2_k127_1717230_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000008615 131.0
LYD2_k127_1717230_6 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000003074 94.0
LYD2_k127_1717230_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000006704 70.0
LYD2_k127_1721103_0 ABC transporter K06020 - 3.6.3.25 2.266e-260 812.0
LYD2_k127_1721103_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000008974 197.0
LYD2_k127_1721103_2 Pyrroloquinoline quinone biosynthesis protein PqqB K06136 - - 0.000000000000000000000000000000000000000000004171 171.0
LYD2_k127_1728103_0 Fructose-bisphosphate aldolase class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000836 452.0
LYD2_k127_1728103_1 FAD linked oxidases, C-terminal domain K00104,K18930 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009315 397.0
LYD2_k127_1728103_2 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000003483 248.0
LYD2_k127_1728103_3 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000007422 231.0
LYD2_k127_1728103_4 epimerase K21568 - 1.23.1.1,1.23.1.2,1.23.1.3,1.23.1.4 0.00000000000000000000000000000000000000000000000000000000000001194 233.0
LYD2_k127_1728103_5 Glucose dehydrogenase C-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000004875 242.0
LYD2_k127_1728103_6 synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000225 119.0
LYD2_k127_1821306_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 580.0
LYD2_k127_1821306_1 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 426.0
LYD2_k127_1821306_2 peptidase M24B X-Pro dipeptidase aminopeptidase domain protein K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000003297 260.0
LYD2_k127_1857341_0 PFAM Na-Ca exchanger integrin-beta4 - - - 1.631e-195 657.0
LYD2_k127_1857341_1 PFAM Glucose Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 407.0
LYD2_k127_1857341_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000001464 157.0
LYD2_k127_1857341_3 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000531 133.0
LYD2_k127_1857341_4 Protein conserved in bacteria K06320 - - 0.00000000007916 73.0
LYD2_k127_1857341_5 cellulose binding - - - 0.00000002104 68.0
LYD2_k127_1881222_0 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008188 564.0
LYD2_k127_1881222_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 302.0
LYD2_k127_1881222_2 Phytanoyl-CoA dioxygenase (PhyH) K21195 - 1.14.11.46 0.0000000000000000000000000000004446 137.0
LYD2_k127_1881222_3 CGNR zinc finger - - - 0.000000000000000000000000000001512 128.0
LYD2_k127_1881222_4 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000001006 119.0
LYD2_k127_1881222_5 Protein of unknown function (DUF971) K03593 - - 0.0000000000000000000000005683 110.0
LYD2_k127_1881222_6 - - - - 0.0000000000000001638 89.0
LYD2_k127_1881222_7 Putative zinc-finger - - - 0.000002123 59.0
LYD2_k127_1903486_0 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005354 274.0
LYD2_k127_1903486_1 Kdo2-lipid A biosynthetic process K02517,K22311 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016020,GO:0016740,GO:0016746,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.3.1.241,2.3.1.265 0.00000000000000000000000000000000000000000000000000000007509 203.0
LYD2_k127_1903486_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000001079 208.0
LYD2_k127_1910375_0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 310.0
LYD2_k127_1910375_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001487 273.0
LYD2_k127_1910375_3 PFAM glycosyl transferase family 39 - - - 0.0000000000000000000000000000000000000000000000000000001743 216.0
LYD2_k127_1910375_4 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000000000000000000001977 139.0
LYD2_k127_1916626_0 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 445.0
LYD2_k127_1916626_1 Belongs to the CinA family K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 315.0
LYD2_k127_1917022_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008971 290.0
LYD2_k127_1917022_1 Peptidase family S51 K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000001798 261.0
LYD2_k127_1917022_2 COG3119 Arylsulfatase A and related enzymes K01133 - 3.1.6.6 0.0000000008333 64.0
LYD2_k127_1917022_3 Copper binding proteins, plastocyanin/azurin family - - - 0.00003844 55.0
LYD2_k127_1921521_0 enterobactin catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 523.0
LYD2_k127_1921521_1 Lipocalin / cytosolic fatty-acid binding protein family K03098 - - 0.00000000000000000000000000000000000000000000000000244 187.0
LYD2_k127_1921521_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000001154 153.0
LYD2_k127_192169_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1275.0
LYD2_k127_192169_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 630.0
LYD2_k127_192169_2 Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 480.0
LYD2_k127_192169_3 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 433.0
LYD2_k127_192169_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001204 304.0
LYD2_k127_192169_5 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040007,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000002088 244.0
LYD2_k127_192169_6 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000000000000005067 136.0
LYD2_k127_192169_7 cytochrome C assembly protein - - - 0.0000000000000003564 89.0
LYD2_k127_192169_8 Uroporphyrinogen III synthase HEM4 K01719,K13542 - 2.1.1.107,4.2.1.75 0.000001105 61.0
LYD2_k127_1922668_0 Putative zinc-binding metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 514.0
LYD2_k127_1922668_1 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 477.0
LYD2_k127_1922668_10 Domain of unknown function (DUF4439) - - - 0.00000000000000000000000000000001207 133.0
LYD2_k127_1922668_11 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000002707 126.0
LYD2_k127_1922668_12 endo-1,4-beta-xylanase activity - GO:0005575,GO:0005576 - 0.00000000000000000000004981 115.0
LYD2_k127_1922668_13 Smr domain - - - 0.000000000000000000008206 101.0
LYD2_k127_1922668_14 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K07814 - - 0.0000000000000000001184 102.0
LYD2_k127_1922668_15 Anti-sigma-K factor rskA - - - 0.000000000000000001811 95.0
LYD2_k127_1922668_16 Alpha beta - - - 0.000000000000000007753 94.0
LYD2_k127_1922668_17 Iron-binding zinc finger CDGSH type K05710 - - 0.00000000000003681 85.0
LYD2_k127_1922668_19 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000007381 68.0
LYD2_k127_1922668_2 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 336.0
LYD2_k127_1922668_20 OsmC-like protein - - - 0.00000227 58.0
LYD2_k127_1922668_3 Domain of unknown function (DUF4331) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 316.0
LYD2_k127_1922668_4 Tryptophan halogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004359 308.0
LYD2_k127_1922668_5 ABC transporter K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001404 269.0
LYD2_k127_1922668_6 PFAM Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006095 281.0
LYD2_k127_1922668_7 Binding-protein-dependent transport system inner membrane component K05846 - - 0.000000000000000000000000000000000000000000000000000000001169 228.0
LYD2_k127_1922668_8 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000000000004671 198.0
LYD2_k127_1922668_9 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000005113 154.0
LYD2_k127_1923000_0 GlcNAc-PI de-N-acetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004258 280.0
LYD2_k127_1923000_1 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000002789 207.0
LYD2_k127_1931583_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003068 272.0
LYD2_k127_1931583_1 Chaperone of endosialidase - - - 0.0000000000000000000000000000000005778 146.0
LYD2_k127_1931583_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000005907 142.0
LYD2_k127_1931583_3 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.00000001172 68.0
LYD2_k127_1931583_4 Metallo-peptidase family M12 - - - 0.0000006563 61.0
LYD2_k127_193727_0 arylsulfatase A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002781 300.0
LYD2_k127_193727_1 ATPases associated with a variety of cellular activities K01990,K09689,K09691 - 3.6.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000685 269.0
LYD2_k127_193727_2 ABC-2 type transporter K01992,K09690 - - 0.0000000000000000000000000000000000000000001461 172.0
LYD2_k127_193727_3 Metallo-peptidase family M12 - - - 0.0000000000000000000001355 108.0
LYD2_k127_1940709_0 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006051 429.0
LYD2_k127_1940709_1 protein conserved in bacteria K09955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002616 402.0
LYD2_k127_1940709_2 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001885 340.0
LYD2_k127_1940709_3 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000000000000000002556 210.0
LYD2_k127_1940709_4 - - - - 0.000000000000000000000000000000000004319 149.0
LYD2_k127_1940709_5 Protein conserved in bacteria - - - 0.000000000000000721 92.0
LYD2_k127_1940709_7 Acetyltransferase (GNAT) family - - - 0.000001529 50.0
LYD2_k127_1940709_8 Domain of unknown function (DUF4440) - - - 0.00002576 56.0
LYD2_k127_1942184_0 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002374 283.0
LYD2_k127_1942184_1 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000000005375 236.0
LYD2_k127_1942184_2 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000001069 231.0
LYD2_k127_1942184_3 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000000000000000000000000005162 224.0
LYD2_k127_1942184_4 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000006253 202.0
LYD2_k127_1942184_5 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000000741 157.0
LYD2_k127_1942184_6 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000000000000000001254 143.0
LYD2_k127_1942184_7 Metallo-peptidase family M12 - - - 0.0000000000000000000000000001088 134.0
LYD2_k127_1942184_8 Metallo-peptidase family M12 - - - 0.0000000000000000000000000004388 132.0
LYD2_k127_1942184_9 Metallo-peptidase family M12 - - - 0.0000000000000000000000000004437 132.0
LYD2_k127_1942744_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.604e-237 754.0
LYD2_k127_1942744_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 443.0
LYD2_k127_1942744_10 Fimbrial assembly protein (PilN) K02663 - - 0.000000000000001703 84.0
LYD2_k127_1942744_2 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 339.0
LYD2_k127_1942744_3 PFAM Peptidase M19, renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000641 303.0
LYD2_k127_1942744_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007748 291.0
LYD2_k127_1942744_5 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000003304 197.0
LYD2_k127_1942744_6 Secretin and TonB N terminus short domain K02666 - - 0.00000000000000000000000000000000000000000000006499 195.0
LYD2_k127_1942744_7 Pilus assembly protein, PilO K02664 - - 0.0000000000000000000000000009716 121.0
LYD2_k127_1942744_8 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000000000005335 99.0
LYD2_k127_1942744_9 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000001468 85.0
LYD2_k127_1951035_0 Radical SAM superfamily - - - 0.0000000000000000000003041 109.0
LYD2_k127_1951035_1 Methyltransferase domain - - - 0.0000000000000002252 94.0
LYD2_k127_1951035_2 Belongs to the glycosyl hydrolase 28 family - - - 0.00000000002502 77.0
LYD2_k127_1951035_3 Bacterial membrane protein YfhO - - - 0.0000000002272 73.0
LYD2_k127_1951561_0 Glucose / Sorbosone dehydrogenase K21430 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 567.0
LYD2_k127_1951561_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004255 264.0
LYD2_k127_1951561_2 lysyltransferase activity K07027 - - 0.00000000000000000000000000000000000000000000000000000009205 209.0
LYD2_k127_1951561_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000003164 198.0
LYD2_k127_1951561_4 PFAM Outer membrane efflux protein - - - 0.000000000000005988 87.0
LYD2_k127_1951561_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888,K15727 - - 0.0000000000000169 87.0
LYD2_k127_1951561_6 PQQ enzyme repeat - - - 0.00000000001639 78.0
LYD2_k127_1969552_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006263 600.0
LYD2_k127_1969552_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 383.0
LYD2_k127_1969552_10 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000007111 177.0
LYD2_k127_1969552_11 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000004349 162.0
LYD2_k127_1969552_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000121 156.0
LYD2_k127_1969552_13 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000003082 154.0
LYD2_k127_1969552_14 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000002944 138.0
LYD2_k127_1969552_15 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000002464 136.0
LYD2_k127_1969552_16 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000004903 119.0
LYD2_k127_1969552_17 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000005198 106.0
LYD2_k127_1969552_18 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000009963 100.0
LYD2_k127_1969552_19 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000001178 91.0
LYD2_k127_1969552_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 305.0
LYD2_k127_1969552_20 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000006439 76.0
LYD2_k127_1969552_21 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000161 70.0
LYD2_k127_1969552_22 structural constituent of ribosome K02907 - - 0.00000001436 65.0
LYD2_k127_1969552_23 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00002071 57.0
LYD2_k127_1969552_3 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000001448 275.0
LYD2_k127_1969552_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007719 258.0
LYD2_k127_1969552_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000003959 215.0
LYD2_k127_1969552_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000001059 212.0
LYD2_k127_1969552_7 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002763 203.0
LYD2_k127_1969552_8 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000001537 199.0
LYD2_k127_1969552_9 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000001594 179.0
LYD2_k127_1976752_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 535.0
LYD2_k127_1976752_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007662 322.0
LYD2_k127_1976752_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000001618 235.0
LYD2_k127_1976752_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000003346 217.0
LYD2_k127_1976752_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000002213 146.0
LYD2_k127_1976752_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000392 120.0
LYD2_k127_1976752_6 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000004157 87.0
LYD2_k127_1976752_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000158 73.0
LYD2_k127_1976752_8 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000011 67.0
LYD2_k127_1982858_0 Involved in the tonB-independent uptake of proteins K01256,K03641 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003944 469.0
LYD2_k127_1982858_1 glycosyl hydrolase, BNR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008181 391.0
LYD2_k127_1982858_2 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 376.0
LYD2_k127_1982858_3 Platelet-activating factor acetylhydrolase, isoform II - - - 0.000000000000000000000000000000000000000000000000000000000000000000879 241.0
LYD2_k127_1982858_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000258 72.0
LYD2_k127_1983445_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688,K18786 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.321 0.0 3004.0
LYD2_k127_1983445_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000005569 185.0
LYD2_k127_1983445_2 Thioredoxin - - - 0.000000000000000000000000000000000002823 145.0
LYD2_k127_1983445_3 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000005222 132.0
LYD2_k127_1983445_6 glyoxalase III activity - - - 0.00001097 57.0
LYD2_k127_1983445_8 Signal peptidase (SPase) II K03101 - 3.4.23.36 0.0001244 53.0
LYD2_k127_1983514_0 3-beta hydroxysteroid dehydrogenase/isomerase family K10011,K12449 - 1.1.1.305,2.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 501.0
LYD2_k127_1983514_1 Glycosyl transferase family 2 K10012,K20534 - 2.4.2.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 411.0
LYD2_k127_1983514_2 Formyl transferase K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008052 295.0
LYD2_k127_1983514_3 PFAM ABC transporter K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008555 262.0
LYD2_k127_1983514_4 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000005423 178.0
LYD2_k127_1995777_0 metalloendopeptidase activity K01283 - 3.4.15.1 1.102e-254 808.0
LYD2_k127_1995777_1 RNB K01147 - 3.1.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 612.0
LYD2_k127_1995777_2 Histidine phosphatase superfamily (branch 1) - - - 0.0000000000000000000000003438 111.0
LYD2_k127_2000510_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 541.0
LYD2_k127_2000510_1 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000009218 275.0
LYD2_k127_2000510_2 PFAM Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000003352 195.0
LYD2_k127_2000510_3 regulation of ruffle assembly - - - 0.00000000000000000000000000000000000000000001518 170.0
LYD2_k127_2000510_5 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000001602 159.0
LYD2_k127_2000510_6 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000006337 128.0
LYD2_k127_2000510_7 - - - - 0.00000000000000000000003038 104.0
LYD2_k127_2000510_8 - - - - 0.0000000000000001807 85.0
LYD2_k127_2000510_9 - - - - 0.000000001563 71.0
LYD2_k127_2001953_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 2.153e-210 687.0
LYD2_k127_2001953_1 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 480.0
LYD2_k127_2001953_2 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 380.0
LYD2_k127_2001953_3 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 340.0
LYD2_k127_2001953_4 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000001516 217.0
LYD2_k127_2001953_5 CoA binding domain K06929 - - 0.00000000000000000000000000000803 133.0
LYD2_k127_2001953_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000001171 108.0
LYD2_k127_2001953_7 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000007021 96.0
LYD2_k127_2001953_8 Protein of unknown function (DUF503) K09764 - - 0.0000000000004545 73.0
LYD2_k127_2001953_9 TonB C terminal - - - 0.0006851 52.0
LYD2_k127_2010314_0 Erythromycin esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009489 571.0
LYD2_k127_2010314_1 Cys/Met metabolism PLP-dependent enzyme K01760,K17217 - 4.4.1.1,4.4.1.2,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 490.0
LYD2_k127_2010314_10 Domain of unknown function (DUF2383) - - - 0.000000000000000000000000000000000000001128 153.0
LYD2_k127_2010314_11 antibiotic catabolic process - - - 0.000000000000000000000000000000000001553 160.0
LYD2_k127_2010314_12 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000000000000000000002443 153.0
LYD2_k127_2010314_13 4Fe-4S dicluster domain - - - 0.000000000000000000000000002619 119.0
LYD2_k127_2010314_14 Pas domain - - - 0.00000000000000000000345 107.0
LYD2_k127_2010314_15 Pas domain - - - 0.0000000000000000001464 97.0
LYD2_k127_2010314_17 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.000000000000000001499 91.0
LYD2_k127_2010314_18 CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000002217 93.0
LYD2_k127_2010314_19 Universal stress protein - - - 0.00000000000000002468 90.0
LYD2_k127_2010314_2 major pilin protein fima - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 404.0
LYD2_k127_2010314_20 Dienelactone hydrolase family - - - 0.0000000000008402 81.0
LYD2_k127_2010314_21 DNA-templated transcription, termination K02600,K02945 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.00000000003312 70.0
LYD2_k127_2010314_22 Ion transport 2 domain protein - - - 0.00000005194 60.0
LYD2_k127_2010314_23 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00004881 55.0
LYD2_k127_2010314_24 Family of unknown function (DUF5335) - - - 0.0003254 48.0
LYD2_k127_2010314_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 377.0
LYD2_k127_2010314_4 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 381.0
LYD2_k127_2010314_5 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001532 289.0
LYD2_k127_2010314_6 phosphoribosyltransferase K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001967 258.0
LYD2_k127_2010314_7 phosphoribosyltransferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000006787 244.0
LYD2_k127_2010314_8 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000005234 194.0
LYD2_k127_2010314_9 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000000000000000000000000000000002691 196.0
LYD2_k127_2017579_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 3.885e-228 718.0
LYD2_k127_2017579_1 L-seryl-tRNA selenium transferase K01042 - 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 358.0
LYD2_k127_2017579_2 COG4770 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 0.000000000000000000000000000000000000000000000000000000007849 204.0
LYD2_k127_2017579_3 response regulator K10943 - - 0.0000000000000000000000000000000000002648 146.0
LYD2_k127_2017579_4 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000005864 101.0
LYD2_k127_2017579_5 Putative modulator of DNA gyrase K03592 - - 0.000000000000000004773 100.0
LYD2_k127_2017579_6 Est1 DNA/RNA binding domain - GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008194,GO:0008375,GO:0009719,GO:0009725,GO:0009735,GO:0009736,GO:0009739,GO:0009740,GO:0009755,GO:0009937,GO:0009938,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010476,GO:0010646,GO:0010648,GO:0016262,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0032870,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071368,GO:0071370,GO:0071396,GO:0071495,GO:0140096,GO:1901700,GO:1901701,GO:2000377 - 0.00000006064 66.0
LYD2_k127_2021994_0 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000008819 153.0
LYD2_k127_2021994_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000004451 137.0
LYD2_k127_2021994_2 Protein of unknown function (DUF3224) - - - 0.000000000000000000000000000005035 130.0
LYD2_k127_2023213_0 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 393.0
LYD2_k127_2023213_1 Pirin K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 325.0
LYD2_k127_2023213_2 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 330.0
LYD2_k127_2023213_3 Bacterial transcriptional activator domain - - - 0.0000000000000000000000000000000000008071 140.0
LYD2_k127_2023213_4 outer membrane efflux protein - - - 0.00000000000000000000000000000001429 145.0
LYD2_k127_2061808_0 Sulfate permease family K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 610.0
LYD2_k127_2061808_1 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002385 276.0
LYD2_k127_2061808_2 Dihydrodipicolinate reductase, N-terminus K21672 - 1.4.1.12,1.4.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000006939 263.0
LYD2_k127_2061808_3 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003347 267.0
LYD2_k127_2061808_4 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00000000000000000000000000000000002447 139.0
LYD2_k127_2061808_5 COG0457 FOG TPR repeat - - - 0.000000000000000000000000002776 128.0
LYD2_k127_2061808_6 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000000000007316 119.0
LYD2_k127_2061808_7 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.0000000000000000002103 96.0
LYD2_k127_2061808_8 Protein of unknown function (DUF1572) - - - 0.00000000004635 68.0
LYD2_k127_2061808_9 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000006327 69.0
LYD2_k127_2063366_0 Acetyl-coenzyme A synthetase N-terminus K01895 - 6.2.1.1 1.925e-320 990.0
LYD2_k127_2063366_1 Molydopterin dinucleotide binding domain K00123 - 1.17.1.9 2.821e-303 950.0
LYD2_k127_2063366_10 Extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 327.0
LYD2_k127_2063366_11 Formate dehydrogenase N, transmembrane K00124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 318.0
LYD2_k127_2063366_12 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007687 301.0
LYD2_k127_2063366_13 solute:proton antiporter activity K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001292 267.0
LYD2_k127_2063366_14 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001785 266.0
LYD2_k127_2063366_15 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000008076 259.0
LYD2_k127_2063366_16 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000001289 232.0
LYD2_k127_2063366_17 calcium- and calmodulin-responsive adenylate cyclase activity K01406,K07004 - 3.4.24.40 0.000000000000000000000000000000000000000000000000000000000803 222.0
LYD2_k127_2063366_18 formate dehydrogenase K00127,K08350 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006091,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009326,GO:0009987,GO:0015942,GO:0015944,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0020037,GO:0022900,GO:0031224,GO:0031226,GO:0032787,GO:0032991,GO:0033554,GO:0036397,GO:0043436,GO:0044237,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0050896,GO:0051716,GO:0052738,GO:0055114,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.00000000000000000000000000000000000000000000002119 179.0
LYD2_k127_2063366_19 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.0000000000000000000000000000000000000001052 160.0
LYD2_k127_2063366_2 Extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000975 619.0
LYD2_k127_2063366_20 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000006027 152.0
LYD2_k127_2063366_21 Thioesterase - - - 0.00000000000000000000000000008041 130.0
LYD2_k127_2063366_22 protein involved in formate dehydrogenase formation K02380 - - 0.00000000000000000000000002042 119.0
LYD2_k127_2063366_23 Redoxin - - - 0.000000000000000002432 91.0
LYD2_k127_2063366_3 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 568.0
LYD2_k127_2063366_4 magnesium chelatase K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 562.0
LYD2_k127_2063366_5 Pfam:DUF955 K07110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007056 520.0
LYD2_k127_2063366_6 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008442 457.0
LYD2_k127_2063366_7 Binding-protein-dependent transport system inner membrane component K02025,K10118,K10237 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 414.0
LYD2_k127_2063366_8 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007966 426.0
LYD2_k127_2063366_9 von Willebrand factor (vWF) type A domain K07114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002541 379.0
LYD2_k127_2068848_0 PFAM Type II secretion system protein E K02652 - - 1.331e-207 680.0
LYD2_k127_2068848_1 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 314.0
LYD2_k127_2068848_10 ECF sigma factor K03088 - - 0.00000000000000000000002409 108.0
LYD2_k127_2068848_11 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000004404 83.0
LYD2_k127_2068848_12 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000648 78.0
LYD2_k127_2068848_13 general secretion pathway protein - - - 0.000000000002138 76.0
LYD2_k127_2068848_14 PFAM Fimbrial assembly family protein K02663 - - 0.00000005164 64.0
LYD2_k127_2068848_15 Pilus assembly protein K02662 - - 0.00000005536 64.0
LYD2_k127_2068848_2 Type ii and iii secretion system protein K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002087 308.0
LYD2_k127_2068848_3 PFAM Type II secretion system F domain K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002638 291.0
LYD2_k127_2068848_4 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000003095 256.0
LYD2_k127_2068848_5 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000001729 223.0
LYD2_k127_2068848_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.000000000000000000000000000000000000000000000000000008728 192.0
LYD2_k127_2068848_7 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000004265 184.0
LYD2_k127_2068848_8 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000006159 163.0
LYD2_k127_2068848_9 Prokaryotic N-terminal methylation motif K02456 - - 0.0000000000000000000000000005396 126.0
LYD2_k127_2075916_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 616.0
LYD2_k127_2075916_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 438.0
LYD2_k127_2075916_10 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000598 156.0
LYD2_k127_2075916_11 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000004995 159.0
LYD2_k127_2075916_12 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000003665 148.0
LYD2_k127_2075916_13 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.000000000000000000000000000002953 125.0
LYD2_k127_2075916_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000001412 104.0
LYD2_k127_2075916_15 - - - - 0.0000000000000005408 88.0
LYD2_k127_2075916_2 TIGRFAM tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 388.0
LYD2_k127_2075916_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000277 268.0
LYD2_k127_2075916_4 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000147 223.0
LYD2_k127_2075916_5 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000001245 199.0
LYD2_k127_2075916_6 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000002886 198.0
LYD2_k127_2075916_7 TIGR00255 family - - - 0.000000000000000000000000000000000000000000001503 190.0
LYD2_k127_2075916_8 Peptidase family M50 K06402 - - 0.000000000000000000000000000000000000000000214 175.0
LYD2_k127_2075916_9 PFAM Histidine triad (HIT) protein K19710 - 2.7.7.53 0.0000000000000000000000000000000000000000002532 168.0
LYD2_k127_207846_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 5.451e-269 843.0
LYD2_k127_207846_1 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 442.0
LYD2_k127_207846_2 Starch synthase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007594 351.0
LYD2_k127_207846_3 Belongs to the glycosyl hydrolase 57 family K07405 - 3.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000003413 271.0
LYD2_k127_207846_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000002154 112.0
LYD2_k127_2108958_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 8.968e-302 931.0
LYD2_k127_2108958_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679,K01744 - 4.2.1.2,4.3.1.1 1.759e-213 671.0
LYD2_k127_2108958_2 2Fe-2S iron-sulfur cluster binding domain K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 401.0
LYD2_k127_2108958_3 cell redox homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002889 248.0
LYD2_k127_2108958_4 - - - - 0.0000000000000000000000000000000000000000000000003229 187.0
LYD2_k127_2108958_5 PFAM MgtC SapB transporter K07507 - - 0.000000000000000000000000000000652 142.0
LYD2_k127_2108958_7 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000884 108.0
LYD2_k127_2144332_0 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000006811 229.0
LYD2_k127_2144332_1 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000001554 216.0
LYD2_k127_2144332_2 - - - - 0.0000000000000000000000000000000000000000001164 166.0
LYD2_k127_2144332_3 lactoylglutathione lyase activity - - - 0.0000000008562 66.0
LYD2_k127_2144332_5 - - - - 0.00000006609 57.0
LYD2_k127_2146567_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001157 290.0
LYD2_k127_2146567_1 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000002951 246.0
LYD2_k127_2146567_2 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000003598 199.0
LYD2_k127_2146567_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000002016 173.0
LYD2_k127_2146567_4 Thioredoxin - - - 0.000000000001611 74.0
LYD2_k127_2146567_5 Domain of unknown function (DUF4340) - - - 0.0002073 50.0
LYD2_k127_2159068_0 Homocysteine S-methyltransferase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 483.0
LYD2_k127_2159068_1 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 447.0
LYD2_k127_2159068_2 Phospholipase D Transphosphatidylase K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 330.0
LYD2_k127_2159068_3 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000003258 265.0
LYD2_k127_2159068_4 DNA polymerase III subunit epsilon K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000001577 241.0
LYD2_k127_2159068_5 WYL domain - - - 0.000000000000000000000000000000000002539 152.0
LYD2_k127_2159068_6 cell redox homeostasis - - - 0.0000000000000000000000008298 111.0
LYD2_k127_2159068_7 peroxiredoxin activity - - - 0.0000000000000000000004136 98.0
LYD2_k127_2159068_8 peptidyl-tyrosine sulfation - - - 0.000000000000000000002145 106.0
LYD2_k127_2159068_9 DoxX K16937 - 1.8.5.2 0.00000000001274 72.0
LYD2_k127_216798_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000001792 232.0
LYD2_k127_216798_1 permease K03548 - - 0.0000000000000000000000000000000000000000003686 172.0
LYD2_k127_216798_2 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000228 134.0
LYD2_k127_2197484_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 509.0
LYD2_k127_2197484_1 PFAM OsmC family protein - - - 0.0000000000000000000000000000000000000000000000000000001554 196.0
LYD2_k127_221060_0 Domain of unknown function (DUF4162) K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004781 282.0
LYD2_k127_221060_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002446 256.0
LYD2_k127_221060_10 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.0002298 44.0
LYD2_k127_221060_2 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000001158 203.0
LYD2_k127_221060_3 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000000000000002573 191.0
LYD2_k127_221060_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000000004222 183.0
LYD2_k127_221060_5 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000002454 169.0
LYD2_k127_221060_6 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000006076 162.0
LYD2_k127_221060_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000001487 149.0
LYD2_k127_221060_8 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000004258 113.0
LYD2_k127_2213355_0 Involved in the tonB-independent uptake of proteins - - - 3.923e-211 684.0
LYD2_k127_2213355_1 peptidase S9B dipeptidylpeptidase IV domain protein K01278 - 3.4.14.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 427.0
LYD2_k127_2213355_2 Protein tyrosine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 337.0
LYD2_k127_2213355_3 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 303.0
LYD2_k127_2213355_4 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000000002277 203.0
LYD2_k127_2213355_5 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000001595 165.0
LYD2_k127_2213355_6 WD40-like Beta Propeller Repeat - - - 0.00000000000000000001219 104.0
LYD2_k127_2229388_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 3.441e-234 727.0
LYD2_k127_2229388_1 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003515 282.0
LYD2_k127_2229388_2 Metallopeptidase family M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.00000000000000000000000000000000000000000000000000007545 210.0
LYD2_k127_2229388_3 salt-induced outer membrane protein K07283 - - 0.0000006658 62.0
LYD2_k127_2235729_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009514 462.0
LYD2_k127_2235729_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 356.0
LYD2_k127_2235729_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000007151 70.0
LYD2_k127_228468_0 Beta-lactamase - - - 6.671e-289 900.0
LYD2_k127_228468_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 509.0
LYD2_k127_228468_2 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000000000024 247.0
LYD2_k127_228468_3 membrane - - - 0.000000000000000000000000000000000000000000000000000005277 194.0
LYD2_k127_228468_4 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000002682 169.0
LYD2_k127_228468_5 chlorophyll binding K03286,K03640 - - 0.00000000000000000000002137 111.0
LYD2_k127_228468_6 Dodecin K09165 - - 0.000000000000000000004349 98.0
LYD2_k127_228468_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000001212 81.0
LYD2_k127_2293404_0 Dipeptidyl peptidase IV (DPP IV) K01278 - 3.4.14.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 523.0
LYD2_k127_2293404_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 334.0
LYD2_k127_2293404_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000159 267.0
LYD2_k127_2293404_3 Protein of unknown function DUF72 - - - 0.0000000000002213 73.0
LYD2_k127_236828_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 530.0
LYD2_k127_236828_1 COG2931 RTX toxins and related Ca2 -binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000003091 267.0
LYD2_k127_236828_2 Cadherin repeats. - - - 0.00000000000000000000000000000000000000000000000000000000000000000005142 258.0
LYD2_k127_236828_3 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000004623 213.0
LYD2_k127_236828_4 Right handed beta helix region - - - 0.00000000000000000000000000000000003196 155.0
LYD2_k127_236828_5 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000004969 156.0
LYD2_k127_236828_6 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000001731 153.0
LYD2_k127_236828_7 ig-like, plexins, transcription factors - - - 0.000006423 60.0
LYD2_k127_2383366_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 452.0
LYD2_k127_2383366_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004133 400.0
LYD2_k127_2383366_2 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 320.0
LYD2_k127_2383366_3 - - - - 0.000000000000000000000000000139 132.0
LYD2_k127_242417_0 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 459.0
LYD2_k127_242417_1 translation initiation factor activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008626 379.0
LYD2_k127_242417_2 Sodium/calcium exchanger protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006257 359.0
LYD2_k127_242417_3 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 318.0
LYD2_k127_242417_4 Sulfate permease family - - - 0.0000000000000000000000000000000000000000000000000002117 187.0
LYD2_k127_2431709_0 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001841 287.0
LYD2_k127_2431709_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000004316 216.0
LYD2_k127_2431709_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000001219 184.0
LYD2_k127_2499985_0 B12 binding domain K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 486.0
LYD2_k127_2499985_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004898 436.0
LYD2_k127_2499985_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000006525 239.0
LYD2_k127_2499985_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000006599 231.0
LYD2_k127_2499985_4 sequence-specific DNA binding K03719 - - 0.00000000000000000000000000000000000000000000005587 173.0
LYD2_k127_254084_0 Peptidase family M13 K07386 - - 9.865e-199 648.0
LYD2_k127_254084_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122,K00335 - 1.17.1.9,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 544.0
LYD2_k127_254084_2 2Fe-2S iron-sulfur cluster binding domain K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 422.0
LYD2_k127_254084_3 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001009 274.0
LYD2_k127_254084_4 DinB superfamily K07552 - - 0.0000000000000000000000000000000000001617 150.0
LYD2_k127_254084_5 Sodium/hydrogen exchanger family - - - 0.0000000000004216 79.0
LYD2_k127_254084_6 chaperone-mediated protein folding - - - 0.0000000003228 72.0
LYD2_k127_254084_7 - K03646 - - 0.00006972 55.0
LYD2_k127_2547603_0 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713,K07714,K19641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 466.0
LYD2_k127_2547603_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 331.0
LYD2_k127_2547603_2 proline dehydrogenase activity K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002504 298.0
LYD2_k127_2547603_3 Competence protein - - - 0.000000000000000000000000003366 121.0
LYD2_k127_2547603_4 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000005176 70.0
LYD2_k127_2547603_5 helix_turn_helix ASNC type - - - 0.000000000000976 71.0
LYD2_k127_2557918_0 PFAM NAD-dependent epimerase dehydratase K01710,K08678 - 4.1.1.35,4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007912 484.0
LYD2_k127_2557918_1 COG0464 ATPases of the AAA class - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 415.0
LYD2_k127_2557918_2 histone H2A-K13 ubiquitination K01338,K07157 - 3.4.21.53 0.0000000000000000000000000004394 123.0
LYD2_k127_2557918_3 PFAM Pentapeptide repeats (8 copies) - - - 0.0000000000000000000000000006371 130.0
LYD2_k127_2557918_4 4Fe-4S single cluster domain of Ferredoxin I K05337 - - 0.000000000000000000000000007592 111.0
LYD2_k127_2557918_5 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.22 0.00000000000002827 73.0
LYD2_k127_2557918_6 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000005062 57.0
LYD2_k127_25844_0 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 2.211e-283 902.0
LYD2_k127_25844_1 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003205 247.0
LYD2_k127_25844_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000004847 227.0
LYD2_k127_2598658_0 UDP binding domain K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003325 500.0
LYD2_k127_2598658_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 372.0
LYD2_k127_2598658_2 Male sterility protein K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 342.0
LYD2_k127_2598658_3 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001349 274.0
LYD2_k127_2598658_4 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000002266 253.0
LYD2_k127_2598658_5 Macro domain protein - - - 0.000000000000000000000000000000000000000006927 160.0
LYD2_k127_2598658_6 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000001597 154.0
LYD2_k127_2598658_7 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000000000000000000008498 136.0
LYD2_k127_2598658_8 photosynthesis K12132,K20543 - 2.7.11.1 0.00007475 49.0
LYD2_k127_2599520_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 616.0
LYD2_k127_2599520_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 327.0
LYD2_k127_2599520_10 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000114 175.0
LYD2_k127_2599520_11 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000001761 158.0
LYD2_k127_2599520_12 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000002116 147.0
LYD2_k127_2599520_13 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.0000000000000000000000000000004124 132.0
LYD2_k127_2599520_14 Ribosomal protein S16 K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000181 81.0
LYD2_k127_2599520_15 - - - - 0.000000000000007243 84.0
LYD2_k127_2599520_16 Yip1 domain - - - 0.000000000001583 77.0
LYD2_k127_2599520_17 Belongs to the UPF0109 family K06960 - - 0.0000000009344 66.0
LYD2_k127_2599520_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007976 332.0
LYD2_k127_2599520_3 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 293.0
LYD2_k127_2599520_4 Belongs to the ABC transporter superfamily K02031,K12371,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008461 290.0
LYD2_k127_2599520_5 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000001177 246.0
LYD2_k127_2599520_6 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000007105 243.0
LYD2_k127_2599520_7 Outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000884 234.0
LYD2_k127_2599520_8 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000003785 239.0
LYD2_k127_2599520_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000183 201.0
LYD2_k127_2608655_0 Protein kinase domain K12132 - 2.7.11.1 1.469e-229 739.0
LYD2_k127_2608655_1 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 1.726e-222 706.0
LYD2_k127_2608655_2 Involved in the tonB-independent uptake of proteins - - - 4.225e-209 678.0
LYD2_k127_2608655_3 Involved in the tonB-independent uptake of proteins - - - 3.348e-199 657.0
LYD2_k127_2608655_4 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 574.0
LYD2_k127_2608655_5 Amino acid permease K20265 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009277 342.0
LYD2_k127_2608655_6 Zn-dependent protease contains TPR repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 316.0
LYD2_k127_2608655_7 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.000000000000000000000000000175 132.0
LYD2_k127_2608655_8 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000003567 105.0
LYD2_k127_2617626_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 580.0
LYD2_k127_2617626_1 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 299.0
LYD2_k127_2617626_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000426 268.0
LYD2_k127_2617626_3 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family - - - 0.00000000000000000000000000000000000000000000000000002152 211.0
LYD2_k127_2617626_4 KR domain K07535 - - 0.00000000000000000000000000000000000000000000002048 195.0
LYD2_k127_2617626_5 PFAM Haloacid dehalogenase domain protein hydrolase - - - 0.000000000000000000000000000000000000000000001616 173.0
LYD2_k127_2617626_6 Cadherin repeats. - - - 0.00000000000000000000000000000000000006908 159.0
LYD2_k127_2617626_7 Putative esterase K07214 - - 0.00000000000000000000000000000214 134.0
LYD2_k127_2617626_8 - - - - 0.0000214 53.0
LYD2_k127_2633136_0 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000001762 221.0
LYD2_k127_2633136_1 LytTr DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000003083 206.0
LYD2_k127_2633136_2 Family 5 K02035,K15580 - - 0.0000000000000000000000000000000000000000000004228 192.0
LYD2_k127_2633136_3 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000002163 154.0
LYD2_k127_2633843_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07788 - - 0.0 1514.0
LYD2_k127_2633843_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07789 - - 0.0 1334.0
LYD2_k127_2633843_2 Amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 443.0
LYD2_k127_2633843_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 389.0
LYD2_k127_2633843_4 DinB superfamily - - - 0.00000000000000000000000008267 111.0
LYD2_k127_26417_0 Transport permease protein K09690 - - 0.0000000000000000000000000000000001263 143.0
LYD2_k127_26417_1 amine dehydrogenase activity - - - 0.0000000000000000000008061 112.0
LYD2_k127_26417_2 Iron-sulfur cluster-binding domain - - - 0.000000004741 66.0
LYD2_k127_26417_3 Helix-turn-helix - - - 0.00000005752 61.0
LYD2_k127_26417_4 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000002507 62.0
LYD2_k127_26417_5 His Kinase A (phosphoacceptor) domain - - - 0.0002947 52.0
LYD2_k127_2662926_0 Squalene-hopene cyclase C-terminal domain K06045 - 4.2.1.129,5.4.99.17 1.656e-203 653.0
LYD2_k127_2662926_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 431.0
LYD2_k127_2662926_2 UPF0126 domain - - - 0.000000000000000000009227 93.0
LYD2_k127_2662926_3 NmrA-like family K00091 - 1.1.1.219 0.0000000000000002842 82.0
LYD2_k127_2680144_0 Cellulose biosynthesis protein BcsQ K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 304.0
LYD2_k127_2680144_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001359 271.0
LYD2_k127_2680144_2 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000001601 233.0
LYD2_k127_2680144_3 Polymer-forming cytoskeletal - - - 0.000000000000000000000001081 108.0
LYD2_k127_2680144_4 rRNA small subunit methyltransferase G K03501 - 2.1.1.170 0.00000000000000000000001599 108.0
LYD2_k127_2680144_5 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000000003315 85.0
LYD2_k127_2680144_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000002496 72.0
LYD2_k127_2680144_7 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000009559 63.0
LYD2_k127_2680144_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.000001308 57.0
LYD2_k127_2681712_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 2.817e-195 616.0
LYD2_k127_2681712_1 Major facilitator superfamily K08167 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 580.0
LYD2_k127_2681712_10 Doxx family K15977 - - 0.000000000000000000000000000000000000000000000002528 177.0
LYD2_k127_2681712_11 DoxX-like family - - - 0.00000000000000000000000000000000000000009195 154.0
LYD2_k127_2681712_12 Protein conserved in bacteria - - - 0.000000000000000000000000000000001504 135.0
LYD2_k127_2681712_14 arylamine N-acetyltransferase activity - - - 0.0000004044 62.0
LYD2_k127_2681712_2 MatE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003404 540.0
LYD2_k127_2681712_3 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 440.0
LYD2_k127_2681712_4 nuclease activity K02335 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 365.0
LYD2_k127_2681712_5 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000002845 239.0
LYD2_k127_2681712_6 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000000000000002334 226.0
LYD2_k127_2681712_7 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.00000000000000000000000000000000000000000000000000000000006225 213.0
LYD2_k127_2681712_8 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000166 209.0
LYD2_k127_2681712_9 Doxx family K15977 - - 0.0000000000000000000000000000000000000000000000004884 180.0
LYD2_k127_2705254_0 DegT/DnrJ/EryC1/StrS aminotransferase family K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 387.0
LYD2_k127_2705254_1 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 316.0
LYD2_k127_2726348_0 PFAM ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 379.0
LYD2_k127_2726348_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 336.0
LYD2_k127_2726348_2 GTP cyclohydrolase 1 K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000001412 195.0
LYD2_k127_2726348_3 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000003609 194.0
LYD2_k127_2726348_4 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000001042 187.0
LYD2_k127_2726348_5 abc-type fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.000000000000000000000000000000000000000000000002791 182.0
LYD2_k127_2738949_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000008905 157.0
LYD2_k127_2738949_2 Bacterial membrane protein YfhO - - - 0.000001442 59.0
LYD2_k127_2749632_0 tRNA synthetases class I (K) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001629 282.0
LYD2_k127_2749632_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001462 279.0
LYD2_k127_2749632_2 DNA alkylation repair enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004098 272.0
LYD2_k127_2749632_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000003743 217.0
LYD2_k127_2749632_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000126 138.0
LYD2_k127_2749632_5 DNA mismatch repair protein MutT K01515 - 3.6.1.13 0.00000000000000000000000000008331 121.0
LYD2_k127_2749632_6 Type II secretion system protein B K02451 - - 0.000001007 54.0
LYD2_k127_2794667_0 FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000011 202.0
LYD2_k127_2794667_1 Beta-lactamase - - - 0.000000000000000000000001047 107.0
LYD2_k127_2794667_2 Domain of Unknown Function (DUF1206) - - - 0.00000000000000000000007884 110.0
LYD2_k127_2794667_3 Protein tyrosine kinase K08884 - 2.7.11.1 0.000000000009894 75.0
LYD2_k127_2794783_0 Amidohydrolase family - - - 0.0 1345.0
LYD2_k127_2794783_1 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00000000000000000000000000000000000000000000000000000000001281 233.0
LYD2_k127_2794783_2 - - - - 0.0000000000000000000000000000000000009045 144.0
LYD2_k127_2794783_3 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000001369 153.0
LYD2_k127_2794783_4 Transcriptional regulator - - - 0.000002145 53.0
LYD2_k127_2794783_5 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.00005622 48.0
LYD2_k127_2808242_0 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 507.0
LYD2_k127_2808242_1 Transcriptional regulator with HTH domain and aminotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 371.0
LYD2_k127_2808242_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 356.0
LYD2_k127_2808242_3 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001663 249.0
LYD2_k127_2808242_4 response regulator - - - 0.000000000002001 78.0
LYD2_k127_2816127_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 525.0
LYD2_k127_2816127_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007779 450.0
LYD2_k127_2816127_2 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.00000000000000000000000000000003126 139.0
LYD2_k127_2816127_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000008467 70.0
LYD2_k127_2864960_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 6.762e-203 651.0
LYD2_k127_2864960_1 glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 554.0
LYD2_k127_2864960_10 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000001226 167.0
LYD2_k127_2864960_11 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000000007127 151.0
LYD2_k127_2864960_12 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000001172 121.0
LYD2_k127_2864960_13 Glycosyl transferases group 1 - - - 0.00000000000000000000000009803 124.0
LYD2_k127_2864960_14 - - - - 0.00000000000000000000003937 103.0
LYD2_k127_2864960_15 Polysaccharide pyruvyl transferase - - - 0.000000000000000000003524 110.0
LYD2_k127_2864960_16 Collagen triple helix repeat (20 copies) - - - 0.0006163 49.0
LYD2_k127_2864960_2 COGs COG0674 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductase alpha subunit K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005081 505.0
LYD2_k127_2864960_3 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 328.0
LYD2_k127_2864960_4 TIGRFAM 2-oxoacid acceptor oxidoreductase, beta subunit, pyruvate 2-ketoisovalerate family K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005441 299.0
LYD2_k127_2864960_5 PFAM Glycosyl transferase family 2 K16557 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000002259 243.0
LYD2_k127_2864960_6 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000102 203.0
LYD2_k127_2864960_7 PFAM iron dependent repressor K03709 - - 0.0000000000000000000000000000000000000000000000000178 192.0
LYD2_k127_2864960_8 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.00000000000000000000000000000000000000000000000005795 194.0
LYD2_k127_2864960_9 TLC ATP/ADP transporter K03301 - - 0.00000000000000000000000000000000000000000174 180.0
LYD2_k127_2879630_0 mRNA catabolic process K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 544.0
LYD2_k127_2879630_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008474 505.0
LYD2_k127_2879630_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 383.0
LYD2_k127_2879630_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 354.0
LYD2_k127_2879630_4 YmdB-like protein K09769 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007384 320.0
LYD2_k127_2879630_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000006176 188.0
LYD2_k127_2879630_6 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000006097 143.0
LYD2_k127_2879630_7 glycosyl transferase family 2 - - - 0.000000000000000000005083 98.0
LYD2_k127_2879630_8 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000368 87.0
LYD2_k127_2879630_9 Cell division protein ZapA K09888 - - 0.000000000006638 69.0
LYD2_k127_2948944_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 7.992e-279 900.0
LYD2_k127_2948944_1 phosphoribosylamine-glycine ligase activity K01945,K01955 - 6.3.4.13,6.3.5.5 1.225e-226 707.0
LYD2_k127_2948944_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 575.0
LYD2_k127_2948944_3 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001276 267.0
LYD2_k127_2948944_4 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000001374 158.0
LYD2_k127_2948944_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.3 0.0000000000000000000000000000000001971 135.0
LYD2_k127_2948944_6 repeat-containing protein - - - 0.0000000000000003569 92.0
LYD2_k127_2953214_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001838 278.0
LYD2_k127_2953214_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000006588 124.0
LYD2_k127_2953214_2 Transmembrane exosortase (Exosortase_EpsH) - - - 0.0000000000000000000000001484 118.0
LYD2_k127_2953214_3 Thioesterase-like superfamily K07107 - - 0.000000000000000008165 98.0
LYD2_k127_2953214_4 response regulator K07714 - - 0.0008765 51.0
LYD2_k127_3017855_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 480.0
LYD2_k127_3017855_1 PFAM Na-Ca exchanger integrin-beta4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 442.0
LYD2_k127_3017855_2 oxidoreductase activity K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 376.0
LYD2_k127_3017855_3 Amidinotransferase K01482 - 3.5.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 310.0
LYD2_k127_3017855_4 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000001964 164.0
LYD2_k127_3017855_5 peptidase activity, acting on L-amino acid peptides - - - 0.00001719 59.0
LYD2_k127_3017855_6 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.0002405 44.0
LYD2_k127_3026738_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 490.0
LYD2_k127_3026738_1 cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000005405 227.0
LYD2_k127_3026738_2 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000000000000004045 106.0
LYD2_k127_3026738_3 mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000003244 94.0
LYD2_k127_3185097_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 2.443e-265 848.0
LYD2_k127_3185097_1 Phosphomethylpyrimidine kinase K16370 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008509 368.0
LYD2_k127_3185097_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000007244 220.0
LYD2_k127_3186460_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 370.0
LYD2_k127_3186460_1 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 357.0
LYD2_k127_3186460_2 Psort location CytoplasmicMembrane, score K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000008214 202.0
LYD2_k127_3186460_3 - - - - 0.000000000000000000000000000000000000000000005217 184.0
LYD2_k127_3202649_0 PFAM 4Fe-4S K00184,K21308 - - 0.0 1062.0
LYD2_k127_3202649_1 Polysulphide reductase, NrfD K00185 - - 8.506e-201 677.0
LYD2_k127_3202649_2 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 323.0
LYD2_k127_3202649_3 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001047 246.0
LYD2_k127_3202649_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000001133 225.0
LYD2_k127_3202649_5 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.0002084 52.0
LYD2_k127_3202649_6 Peptidase M56 - - - 0.0003097 51.0
LYD2_k127_3205044_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0033554,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 501.0
LYD2_k127_3205044_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 501.0
LYD2_k127_3205044_2 Protein of unknown function (DUF1697) - - - 0.000000000000000000000000000000000000000006766 160.0
LYD2_k127_3205044_3 enzyme binding K00567,K07443 - 2.1.1.63 0.000000000000000000000000004402 123.0
LYD2_k127_3205044_4 DJ-1/PfpI family - - - 0.0000000000628 74.0
LYD2_k127_3205044_5 - K01822 - 5.3.3.1 0.00000003774 64.0
LYD2_k127_3207754_0 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase - - - 0.000000000000000000000000000002397 141.0
LYD2_k127_3207754_1 Bacterial membrane protein, YfhO - - - 0.000000000000000000004882 111.0
LYD2_k127_3207754_2 Bacterial membrane protein, YfhO - - - 0.000000000001964 81.0
LYD2_k127_3207754_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000007469 68.0
LYD2_k127_3207754_4 Psort location CytoplasmicMembrane, score - - - 0.0000000113 70.0
LYD2_k127_3210164_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 3.169e-205 656.0
LYD2_k127_3210164_1 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 GO:0001530,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0008289,GO:0009279,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044462,GO:0044464,GO:0045229,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071709,GO:0071840,GO:0071944,GO:0097367,GO:1901264 - 0.0000000000000000000479 106.0
LYD2_k127_3210164_2 - - - - 0.0000000000000003139 84.0
LYD2_k127_3213299_0 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001056 251.0
LYD2_k127_3213299_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000007538 187.0
LYD2_k127_3213299_2 COG4166 ABC-type oligopeptide transport system, periplasmic component K02035,K15580 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006457,GO:0006810,GO:0006857,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015833,GO:0030288,GO:0030313,GO:0031975,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0061077,GO:0071702,GO:0071705,GO:1900750 - 0.0000000002906 74.0
LYD2_k127_3216209_0 lipopolysaccharide transport K22110 - - 0.0 1424.0
LYD2_k127_3216209_1 Amylo-alpha-1,6-glucosidase - - - 9.36e-246 774.0
LYD2_k127_3216209_2 alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 531.0
LYD2_k127_3216209_3 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009449 378.0
LYD2_k127_3216209_4 Protein involved in meta-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 297.0
LYD2_k127_3216209_5 PFAM Glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005097 278.0
LYD2_k127_3216209_6 uridine kinase K00876 - 2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000002867 254.0
LYD2_k127_3216209_7 DoxX-like family K15977 - - 0.00000000000000000000000000000009322 130.0
LYD2_k127_3222523_0 Prolyl oligopeptidase family - - - 1.747e-274 859.0
LYD2_k127_3222523_1 Protein of unknown function, DUF255 K06888 - - 2.916e-195 629.0
LYD2_k127_3222523_10 bacteriochlorophyll K04040 - 2.5.1.133,2.5.1.62 0.0000000000459 76.0
LYD2_k127_3222523_11 PBS lyase HEAT-like repeat - - - 0.0000000006254 71.0
LYD2_k127_3222523_2 penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 616.0
LYD2_k127_3222523_3 PFAM Cytochrome b b6 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 400.0
LYD2_k127_3222523_4 NAD-dependent histone deacetylase activity (H3-K14 specific) K11407 - 3.5.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 338.0
LYD2_k127_3222523_5 Predicted membrane protein (DUF2238) K08984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 300.0
LYD2_k127_3222523_6 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.000000000000000000000000000000000000000000000000000000009793 203.0
LYD2_k127_3222523_7 LssY C-terminus - - - 0.0000000000000000000000000000000000000000000000000001772 197.0
LYD2_k127_3222523_8 membrane - GO:0005575,GO:0016020 - 0.0000000000000000000000006272 119.0
LYD2_k127_3222523_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00172,K00441,K03522 - 1.12.98.1,1.2.7.1 0.000000000000000000000007786 109.0
LYD2_k127_3229590_0 metallopeptidase activity K01179 - 3.2.1.4 2.356e-243 781.0
LYD2_k127_3229590_1 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000000000000000001141 198.0
LYD2_k127_3229590_2 domain, Protein K15125 - - 0.00000002633 68.0
LYD2_k127_3229590_3 Domain of unknown function (DUF5122) beta-propeller - - - 0.000001845 60.0
LYD2_k127_3233538_0 asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 599.0
LYD2_k127_3233538_1 Elongator protein 3, MiaB family, Radical SAM K06936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005562 351.0
LYD2_k127_3233538_2 PFAM amine oxidase K01854 - 5.4.99.9 0.00000000000000000000000000000000000000000000000001245 196.0
LYD2_k127_3233538_3 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000001965 190.0
LYD2_k127_3233538_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000003674 135.0
LYD2_k127_3239847_0 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 415.0
LYD2_k127_3239847_1 Aldo/keto reductase family K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 369.0
LYD2_k127_3239847_2 esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009266 323.0
LYD2_k127_3239847_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000008141 217.0
LYD2_k127_3239847_4 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000000006032 111.0
LYD2_k127_324198_0 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000004087 266.0
LYD2_k127_324198_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000002332 186.0
LYD2_k127_324198_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.0000000000000000000000000000000003588 149.0
LYD2_k127_324198_3 helix_turn_helix, cAMP Regulatory protein K21564 - - 0.000000000000000000000004135 119.0
LYD2_k127_324198_4 Radical SAM superfamily - - - 0.00000000000000000000611 106.0
LYD2_k127_324198_5 TIGRFAM DNA binding domain protein, excisionase family - - - 0.0000000000357 66.0
LYD2_k127_3243526_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002047 278.0
LYD2_k127_3243526_1 MotA TolQ ExbB proton channel K03561,K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000006783 232.0
LYD2_k127_3243526_2 TIGRFAM TonB K03832 - - 0.0000000000000000000000002503 115.0
LYD2_k127_3243526_3 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.000000000000000000000003336 108.0
LYD2_k127_3243526_4 biopolymer transport protein K03559,K03560 - - 0.0000000000000000000005846 100.0
LYD2_k127_3254092_0 Glycosyl hydrolases family 2, TIM barrel domain K01195 - 3.2.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007498 423.0
LYD2_k127_3254092_1 COG2513 PEP phosphonomutase and related enzymes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 311.0
LYD2_k127_3254092_2 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003016 254.0
LYD2_k127_3254092_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000001856 229.0
LYD2_k127_3254092_4 RecA-superfamily ATPases implicated in signal transduction K08482 - - 0.000000000000000000000000000000000000000000000000004948 189.0
LYD2_k127_3254092_5 NIPSNAP - - - 0.000000000000000000000000000001148 124.0
LYD2_k127_3254092_6 Dienelactone hydrolase family - - - 0.000000000000000000000000003866 124.0
LYD2_k127_3254092_7 beta-lactamase - - - 0.0000002486 63.0
LYD2_k127_3261032_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 1.234e-296 940.0
LYD2_k127_3261032_1 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 375.0
LYD2_k127_3261032_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000001845 261.0
LYD2_k127_3261032_3 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000002986 125.0
LYD2_k127_3261032_4 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000001764 106.0
LYD2_k127_3261032_5 - - - - 0.0000000000000000001784 96.0
LYD2_k127_3261032_6 BON domain - - - 0.000000000000003003 78.0
LYD2_k127_3265898_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 2.257e-242 766.0
LYD2_k127_3265898_1 Voltage gated chloride channel - - - 4.165e-217 689.0
LYD2_k127_3265898_2 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 631.0
LYD2_k127_3265898_3 Pyruvate ferredoxin oxidoreductase beta subunit C terminal K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006758 299.0
LYD2_k127_3265898_4 Starch synthase catalytic domain - - - 0.00000002635 58.0
LYD2_k127_3276343_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 309.0
LYD2_k127_3276343_1 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000818 249.0
LYD2_k127_3276343_2 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000002795 241.0
LYD2_k127_3276343_3 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000002519 136.0
LYD2_k127_3276343_4 - - - - 0.00000003916 61.0
LYD2_k127_3293305_0 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 418.0
LYD2_k127_3293305_1 glycosyl transferase group 1 K00754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003975 410.0
LYD2_k127_3293305_10 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000008441 81.0
LYD2_k127_3293305_11 Belongs to the BshC family K22136 - - 0.00000000000299 78.0
LYD2_k127_3293305_12 FecR protein - - - 0.000002746 59.0
LYD2_k127_3293305_13 TM2 domain - - - 0.0001221 50.0
LYD2_k127_3293305_2 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 383.0
LYD2_k127_3293305_3 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000000000000000000000321 209.0
LYD2_k127_3293305_4 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000005942 202.0
LYD2_k127_3293305_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000003036 196.0
LYD2_k127_3293305_6 - - - - 0.00000000000000000000000000007997 125.0
LYD2_k127_3293305_7 Uncharacterized protein family UPF0029 - - - 0.000000000000000000000007093 117.0
LYD2_k127_3293305_8 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000004891 85.0
LYD2_k127_3293305_9 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000004661 80.0
LYD2_k127_3295592_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007542 325.0
LYD2_k127_3295592_1 Serine dehydratase alpha chain K01752 GO:0003674,GO:0003824,GO:0003941,GO:0016829,GO:0016840,GO:0016841 4.3.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000998 249.0
LYD2_k127_3295592_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000003204 182.0
LYD2_k127_3295592_3 Transmembrane and - - - 0.000000000000000000000000000000000000003176 169.0
LYD2_k127_3295592_4 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000001791 93.0
LYD2_k127_3312624_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 369.0
LYD2_k127_3312624_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007794 341.0
LYD2_k127_3312624_2 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000002453 214.0
LYD2_k127_3312624_3 PFAM ABC-2 type transporter K01992,K09690 - - 0.000000000000000000000002893 112.0
LYD2_k127_331780_0 TIGRFAM Na H antiporter, bacterial form K03316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001326 280.0
LYD2_k127_331780_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000006038 226.0
LYD2_k127_331780_2 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000000004874 146.0
LYD2_k127_3318508_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 2.667e-206 666.0
LYD2_k127_3318508_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008606 537.0
LYD2_k127_3318508_2 Type II secretion system (T2SS), protein F K02455 - - 0.000000000000000000000000000000000000000000000000000000000000000000002163 241.0
LYD2_k127_3318508_3 PFAM glycosyl transferase family 9 K02841 - - 0.000000000000000000000000000000000000004336 158.0
LYD2_k127_3318508_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000001832 80.0
LYD2_k127_3318850_0 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.000000000000000000000000000000000000000000000000000000000000000004593 254.0
LYD2_k127_3318850_1 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000002574 162.0
LYD2_k127_3318850_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0000000000000000000000000000000000004727 162.0
LYD2_k127_3318850_3 Pkd domain containing protein K12567 - 2.7.11.1 0.0000000000000000000000000000000004059 149.0
LYD2_k127_3318850_4 long-chain fatty acid transport protein - - - 0.0000007762 61.0
LYD2_k127_3322975_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 547.0
LYD2_k127_3322975_1 Protein of unknown function (DUF1348) K09958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 291.0
LYD2_k127_3322975_2 Helix-hairpin-helix domain K04477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000224 266.0
LYD2_k127_3322975_3 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000002608 235.0
LYD2_k127_3322975_4 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000000009672 203.0
LYD2_k127_3322975_5 - - - - 0.00000000000000000000000000000000000000000000002301 174.0
LYD2_k127_3322975_6 - - - - 0.00000000000000000000000007606 118.0
LYD2_k127_3322975_7 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000000000000000141 108.0
LYD2_k127_3322975_8 Metallo-peptidase family M12 - - - 0.0000000000000000000399 96.0
LYD2_k127_3322975_9 Thiamine-binding protein - - - 0.000000000002675 70.0
LYD2_k127_3323898_0 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006254 526.0
LYD2_k127_3323898_1 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 428.0
LYD2_k127_3323898_2 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 393.0
LYD2_k127_3323898_3 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 402.0
LYD2_k127_3323898_4 Acyl-CoA dehydrogenase, N-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 402.0
LYD2_k127_3323898_5 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001586 305.0
LYD2_k127_3323898_6 Phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000007782 227.0
LYD2_k127_3323898_7 serine-type endopeptidase activity K20276 - - 0.00000000000000000000000000000000000000000000000002061 200.0
LYD2_k127_3323898_8 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000008722 178.0
LYD2_k127_3323898_9 Pyruvate phosphate dikinase - - - 0.00000001918 66.0
LYD2_k127_3336310_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.311e-271 862.0
LYD2_k127_3336310_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007375 595.0
LYD2_k127_3336310_10 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.0001505 51.0
LYD2_k127_3336310_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 310.0
LYD2_k127_3336310_3 Sodium/calcium exchanger protein K07300 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051139,GO:0051179,GO:0051234,GO:0055085,GO:0070588,GO:0070838,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0099516,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008969 284.0
LYD2_k127_3336310_4 PFAM cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000005167 261.0
LYD2_k127_3336310_5 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000001757 230.0
LYD2_k127_3336310_6 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000001247 133.0
LYD2_k127_3336310_7 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000001899 68.0
LYD2_k127_3336310_8 Prokaryotic Cytochrome C oxidase subunit IV K02277 - 1.9.3.1 0.0000002133 62.0
LYD2_k127_3336310_9 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 0.0000003431 52.0
LYD2_k127_3353364_0 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008247 361.0
LYD2_k127_3353364_1 PFAM Formiminotransferase-cyclodeaminase - - - 0.000000000000000000000000000003574 138.0
LYD2_k127_3353364_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 - 0.000000000000000000000000003279 112.0
LYD2_k127_3353364_3 DivIVA protein K04074 - - 0.000000000000000001496 96.0
LYD2_k127_3353364_4 YGGT family K02221 - - 0.000000000000000005976 90.0
LYD2_k127_3365885_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 596.0
LYD2_k127_3365885_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 365.0
LYD2_k127_3365885_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000004155 213.0
LYD2_k127_3365885_3 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000004265 184.0
LYD2_k127_3365885_4 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000003788 183.0
LYD2_k127_3365885_5 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000001642 154.0
LYD2_k127_3365885_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000001045 55.0
LYD2_k127_3365885_7 Putative zinc-finger - - - 0.000456 50.0
LYD2_k127_3368518_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007592 393.0
LYD2_k127_3368518_1 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 336.0
LYD2_k127_3368518_11 - - - - 0.00000003535 57.0
LYD2_k127_3368518_12 PFAM HD domain - - - 0.0000001083 65.0
LYD2_k127_3368518_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 340.0
LYD2_k127_3368518_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 310.0
LYD2_k127_3368518_4 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000009136 183.0
LYD2_k127_3368518_5 Sortase family K07284 - 3.4.22.70 0.0000000000000000000000000000000000000000000002588 176.0
LYD2_k127_3368518_6 STAS domain K04749 - - 0.000000000000000000000000000000003465 132.0
LYD2_k127_3368518_7 sigma factor antagonist activity K04757,K17752 - 2.7.11.1 0.000000000000000000000000006018 115.0
LYD2_k127_3368518_8 - - - - 0.000000000000000000001431 103.0
LYD2_k127_3368518_9 protein conserved in archaea - - - 0.00000000000000001518 97.0
LYD2_k127_3373311_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004953 432.0
LYD2_k127_3373311_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 336.0
LYD2_k127_3373311_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000005174 289.0
LYD2_k127_3373311_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000001185 235.0
LYD2_k127_3373311_4 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000003764 169.0
LYD2_k127_3373311_5 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000004371 81.0
LYD2_k127_3373311_6 aminopeptidase - - - 0.00000000000005156 85.0
LYD2_k127_338246_0 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 464.0
LYD2_k127_338246_1 Hydrolase CocE NonD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008139 424.0
LYD2_k127_338246_2 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000000000000004285 224.0
LYD2_k127_3391242_0 Tryptophan halogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007899 384.0
LYD2_k127_3391242_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 330.0
LYD2_k127_3391242_2 short chain dehydrogenase K07124 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000274 278.0
LYD2_k127_3391242_3 ASPIC and UnbV - - - 0.000000000000000000007711 100.0
LYD2_k127_3391242_4 Resolvase, N terminal domain - - - 0.00001476 48.0
LYD2_k127_3393570_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000003057 231.0
LYD2_k127_3393570_1 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.000000000000000000000000000000000000000000000000000000003819 217.0
LYD2_k127_3393570_2 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000000000000000000000000000000000634 181.0
LYD2_k127_3393570_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000006756 173.0
LYD2_k127_3393570_4 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000000000000004181 168.0
LYD2_k127_3393570_5 PFAM Peptidase M23 K21471 - - 0.000000000000000000000000000000927 140.0
LYD2_k127_3393570_6 Domain of unknown function (DUF1844) - - - 0.00000001109 63.0
LYD2_k127_3416338_0 C-terminus of AA_permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 389.0
LYD2_k127_3416338_1 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K00945,K02945,K03527 - 1.17.7.4,2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 365.0
LYD2_k127_3416338_2 Acts as a magnesium transporter K04767,K06213,K15986 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000955 307.0
LYD2_k127_3416338_3 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C K06137 - 1.3.3.11 0.00000000000000000000000000000000000000000000000000000000002337 214.0
LYD2_k127_3416338_4 Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000001123 196.0
LYD2_k127_3416338_5 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000631 156.0
LYD2_k127_3416338_6 Haloacid dehalogenase-like hydrolase K07025 - - 0.0000000000000000000000000000000001104 148.0
LYD2_k127_3416338_7 Molybdopterin converting factor subunit K03635,K21142 - 2.8.1.12 0.00000000000000000000000000004849 121.0
LYD2_k127_3416338_8 Mo-molybdopterin cofactor metabolic process K03636,K03637,K03752,K21142 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.77,2.8.1.12,4.6.1.17 0.00000000001655 67.0
LYD2_k127_3434373_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 439.0
LYD2_k127_3434373_1 Belongs to the PdxS SNZ family K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003445 297.0
LYD2_k127_3434373_2 Alanine-glyoxylate amino-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000007817 244.0
LYD2_k127_3434373_3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000002473 206.0
LYD2_k127_34462_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 526.0
LYD2_k127_34462_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009087 413.0
LYD2_k127_34462_2 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 411.0
LYD2_k127_34462_3 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 377.0
LYD2_k127_34462_4 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007309 275.0
LYD2_k127_34462_5 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000003234 204.0
LYD2_k127_34462_6 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000004585 166.0
LYD2_k127_34462_7 Molybdenum cofactor biosynthesis protein B - - - 0.0000000000000000000000000000000000018 143.0
LYD2_k127_34462_8 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000001341 105.0
LYD2_k127_34462_9 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000005594 96.0
LYD2_k127_3458057_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 359.0
LYD2_k127_3458057_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183,K11189 - 2.7.1.202,2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001561 308.0
LYD2_k127_3458057_2 Cobyrinic acid ac-diamide synthase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 299.0
LYD2_k127_3458057_3 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000003402 202.0
LYD2_k127_3458057_4 Bifunctional nuclease K03617,K08999 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000009382 192.0
LYD2_k127_3458057_5 thiolester hydrolase activity - - - 0.000000000000000000000000000000000000000001652 160.0
LYD2_k127_3458057_6 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000202 146.0
LYD2_k127_3460367_0 MMPL family K03296 - - 0.0 1235.0
LYD2_k127_3460367_1 PFAM EAL domain - - - 0.000000000000000000000000000000000000000000000005801 192.0
LYD2_k127_3460367_2 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000003342 109.0
LYD2_k127_3460367_3 Response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000002202 105.0
LYD2_k127_3467714_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 384.0
LYD2_k127_3467714_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000001693 219.0
LYD2_k127_3467714_2 Protein of unknown function (DUF1569) - - - 0.000000000000000000000000000000000000000000001506 169.0
LYD2_k127_3467714_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000001578 117.0
LYD2_k127_3467714_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000002325 100.0
LYD2_k127_3467714_5 - - - - 0.000005539 52.0
LYD2_k127_3530268_0 Peptidase, M16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 433.0
LYD2_k127_3530268_1 PFAM ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009186 328.0
LYD2_k127_3530268_2 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007662 287.0
LYD2_k127_3530268_3 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000001329 254.0
LYD2_k127_3530268_4 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006657 251.0
LYD2_k127_3548955_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 432.0
LYD2_k127_3548955_1 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 332.0
LYD2_k127_3548955_2 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.0000000000000000000000000000000002851 149.0
LYD2_k127_3548955_3 mitochondrial genome maintenance K02879,K16193 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005835 138.0
LYD2_k127_3548955_4 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000001581 83.0
LYD2_k127_3548955_5 VanZ like family - - - 0.0000000001656 70.0
LYD2_k127_3548955_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000004468 68.0
LYD2_k127_3564111_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005065 290.0
LYD2_k127_3575567_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009891 407.0
LYD2_k127_3575567_1 CBS domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001278 284.0
LYD2_k127_3575567_2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III - - - 0.0000000000000000000000000000000000000000000000000000000000000000001002 257.0
LYD2_k127_3575567_3 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000006523 235.0
LYD2_k127_3575567_4 PFAM Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000003455 196.0
LYD2_k127_3575567_5 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000003012 178.0
LYD2_k127_3575567_6 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0040007,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.0000000000000000000000000000004665 132.0
LYD2_k127_3575567_7 Ferredoxin K04755 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0022900,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0071840 - 0.000000000000001142 80.0
LYD2_k127_3575567_8 permease - - - 0.00004286 49.0
LYD2_k127_35964_0 Large extracellular alpha-helical protein - - - 0.0 1447.0
LYD2_k127_3628732_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000776 369.0
LYD2_k127_3628732_1 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000933 286.0
LYD2_k127_3628732_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000002028 236.0
LYD2_k127_3628732_3 Carbon-nitrogen hydrolase K03820 - - 0.000000000000000000000000000000000000000003055 162.0
LYD2_k127_3628732_4 NUDIX domain - - - 0.00000000000000000000000000000000000003337 150.0
LYD2_k127_3628732_5 peptidyl-tyrosine sulfation - - - 0.00000002817 67.0
LYD2_k127_3630670_0 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 565.0
LYD2_k127_3630670_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 464.0
LYD2_k127_3630670_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000225 274.0
LYD2_k127_3630670_3 Cell division ATP-binding protein ftsE K09811,K09812 GO:0000166,GO:0000287,GO:0000910,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007049,GO:0008144,GO:0008150,GO:0008356,GO:0009898,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019897,GO:0019898,GO:0022402,GO:0022603,GO:0022607,GO:0023051,GO:0030145,GO:0030554,GO:0031234,GO:0032153,GO:0032506,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042173,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043937,GO:0043938,GO:0044085,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0046677,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051301,GO:0065007,GO:0070297,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363,GO:1902531 - 0.000000000000000000000000000000000000000000000000000000000000000000000000002732 267.0
LYD2_k127_3630670_4 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000003208 126.0
LYD2_k127_3630670_5 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811,K09812 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.00000000001283 72.0
LYD2_k127_3636104_0 Serves to protect cells from the toxic effects of hydrogen peroxide K03781 - 1.11.1.6 7.454e-311 972.0
LYD2_k127_3636104_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000000000000000001407 220.0
LYD2_k127_3636104_2 phosphorelay signal transduction system - - - 0.0000000000000000000001864 104.0
LYD2_k127_3636104_3 DNA ligase K01971 - 6.5.1.1 0.00000000000000000008614 91.0
LYD2_k127_3636104_4 Cytochrome c - - - 0.0000000000000000001094 103.0
LYD2_k127_3636104_5 - - - - 0.00000000000000006049 82.0
LYD2_k127_3636104_6 Hemerythrin hhe cation binding - - - 0.00000000564 65.0
LYD2_k127_3636104_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00005007 50.0
LYD2_k127_363979_0 Involved in the tonB-independent uptake of proteins - - - 9.063e-224 723.0
LYD2_k127_363979_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000145 266.0
LYD2_k127_363979_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000004429 243.0
LYD2_k127_363979_3 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000003909 165.0
LYD2_k127_363979_4 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000002912 137.0
LYD2_k127_363979_5 Adenylate cyclase - - - 0.00000000000000001189 91.0
LYD2_k127_363979_6 Methionine biosynthesis protein MetW - - - 0.000000000000001932 87.0
LYD2_k127_3640133_0 Sodium/calcium exchanger protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 427.0
LYD2_k127_3640133_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 319.0
LYD2_k127_3640133_2 VIT family - - - 0.0000000000000000000000000000000000000000000000001869 197.0
LYD2_k127_3640133_3 - - - - 0.0000000000000000000000000000000000000000000009937 177.0
LYD2_k127_3668945_0 arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003729 295.0
LYD2_k127_3668945_1 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.000000000000000000000000001877 123.0
LYD2_k127_3801111_0 Cytochrome C assembly protein K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 469.0
LYD2_k127_3801111_1 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000001926 117.0
LYD2_k127_3801111_3 Metallo-beta-lactamase superfamily - - - 0.0008835 45.0
LYD2_k127_3802468_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1390.0
LYD2_k127_3802468_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 6.191e-227 717.0
LYD2_k127_3802468_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 334.0
LYD2_k127_3802468_3 Phosphoenolpyruvate phosphomutase - - - 0.0000000000000000000000000000000000000000000000000000004646 200.0
LYD2_k127_3802468_4 Mycothiol maleylpyruvate isomerase N-terminal domain - - - 0.0000000000000000000000000000000000000000000006574 171.0
LYD2_k127_3802468_5 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000003393 145.0
LYD2_k127_3813794_0 PFAM carboxyl transferase K01969,K15052 - 2.1.3.15,6.4.1.3,6.4.1.4 2.378e-249 780.0
LYD2_k127_3813794_1 adenylosuccinate lyase K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 516.0
LYD2_k127_3813794_10 Belongs to the HAM1 NTPase family K02428 - 3.6.1.66 0.00000000000000000000000000000000000006023 164.0
LYD2_k127_3813794_11 ABC transporter K01990,K09695 - - 0.0000000000000000000000001544 106.0
LYD2_k127_3813794_12 MOSC N-terminal beta barrel domain K07140 - - 0.00000000000000000000009534 107.0
LYD2_k127_3813794_13 Ferric siderophore transporter, periplasmic energy transduction protein TonB K03832 - - 0.00000000001018 78.0
LYD2_k127_3813794_2 Amidinotransferase K01478 - 3.5.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 346.0
LYD2_k127_3813794_3 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 347.0
LYD2_k127_3813794_4 Amino acid kinase family K00926 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008804,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019546,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 333.0
LYD2_k127_3813794_5 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 308.0
LYD2_k127_3813794_6 methylmalonyl-CoA mutase C-terminal K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000002355 205.0
LYD2_k127_3813794_7 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000001833 205.0
LYD2_k127_3813794_8 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000003274 210.0
LYD2_k127_3813794_9 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000005654 155.0
LYD2_k127_3815157_0 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 415.0
LYD2_k127_3815157_1 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000001108 239.0
LYD2_k127_3815157_2 - - - - 0.000000000000000000000000000000000000000000000000000000007429 207.0
LYD2_k127_3815157_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000001308 148.0
LYD2_k127_3815441_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211 492.0
LYD2_k127_3815441_1 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 460.0
LYD2_k127_3815441_10 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000025 48.0
LYD2_k127_3815441_2 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 424.0
LYD2_k127_3815441_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 387.0
LYD2_k127_3815441_4 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 326.0
LYD2_k127_3815441_5 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000657 262.0
LYD2_k127_3815441_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000007899 169.0
LYD2_k127_3815441_7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.00000000000000000000000000000000001768 142.0
LYD2_k127_3815441_8 Thioesterase superfamily K10806 - - 0.000000000000000000000000000005162 136.0
LYD2_k127_3815441_9 - - - - 0.0000000000005812 81.0
LYD2_k127_3819713_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01539 - 3.6.3.9 0.0 1052.0
LYD2_k127_3819713_1 RecA-superfamily ATPases implicated in signal transduction K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 456.0
LYD2_k127_3819713_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 420.0
LYD2_k127_3827371_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 584.0
LYD2_k127_3827371_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 451.0
LYD2_k127_3827371_2 PA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 360.0
LYD2_k127_3827371_3 YCII-related domain - - - 0.00000000000000000000000009513 113.0
LYD2_k127_3827538_0 Heat shock 70 kDa protein K04043 - - 3.364e-301 934.0
LYD2_k127_3827538_1 Transcriptional regulator, MerR family K13640 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000004384 121.0
LYD2_k127_3827538_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000006107 117.0
LYD2_k127_3827538_3 chaperone-mediated protein folding - - - 0.0001025 56.0
LYD2_k127_3830458_0 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001127 250.0
LYD2_k127_3830458_1 Amidohydrolase family - - - 0.000000000000000000000000000001431 132.0
LYD2_k127_3830458_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000000000000001309 84.0
LYD2_k127_3830458_3 domain, Protein K20276 - - 0.0001316 52.0
LYD2_k127_3831545_0 Involved in the tonB-independent uptake of proteins - - - 7.322e-211 683.0
LYD2_k127_3831545_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 460.0
LYD2_k127_3831545_2 Phospholipase D. Active site motifs. K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 404.0
LYD2_k127_3831545_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K19595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007773 283.0
LYD2_k127_3831545_4 PFAM OsmC family protein - - - 0.0000000000000000000000000000000000000003522 174.0
LYD2_k127_3831545_5 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000002402 155.0
LYD2_k127_3831545_6 YjbR - - - 0.0000000000000000000235 100.0
LYD2_k127_3831545_7 Domain of unknown function (DUF4410) - - - 0.000000000008917 74.0
LYD2_k127_3831545_8 Glycosyltransferase like family 2 - - - 0.00000001225 65.0
LYD2_k127_3836178_0 ATP-dependent helicase nuclease subunit A K16898 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006437 631.0
LYD2_k127_3836178_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00322 - 1.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 599.0
LYD2_k127_3836178_2 PD-(D/E)XK nuclease superfamily K16899 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 468.0
LYD2_k127_3836178_3 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000649 376.0
LYD2_k127_3836178_4 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002884 270.0
LYD2_k127_3838304_0 Dipeptidyl carboxypeptidase K01284 - 3.4.15.5 5.886e-272 861.0
LYD2_k127_3838304_1 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 363.0
LYD2_k127_3838304_2 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 340.0
LYD2_k127_3838304_3 OsmC-like protein K04063 - - 0.0000000000000000000000000000000000000000000000000005774 187.0
LYD2_k127_3838304_4 Belongs to the ClpA ClpB family K03694 - - 0.000000000000000001405 93.0
LYD2_k127_3843360_0 Sigma-54 interaction domain K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 357.0
LYD2_k127_3843360_1 Histidine kinase-like ATPases - - - 0.00000000000000000169 88.0
LYD2_k127_3849763_0 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000000004377 237.0
LYD2_k127_3849763_1 Putative heavy-metal-binding - - - 0.000000000000000000000003018 102.0
LYD2_k127_3849763_2 Putative lumazine-binding - - - 0.000000000000000000001791 107.0
LYD2_k127_3849763_3 gluconolactonase activity - - - 0.0000000000000002987 92.0
LYD2_k127_3849763_4 Transcriptional regulator, AraC family K00567,K10778 GO:0001130,GO:0003674,GO:0003700,GO:0003824,GO:0003908,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016740,GO:0016741,GO:0018125,GO:0018193,GO:0018198,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044728,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070988,GO:0071704,GO:0080090,GO:0080111,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 2.1.1.63 0.000000000000000314 89.0
LYD2_k127_3853210_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 484.0
LYD2_k127_3853210_1 Belongs to the thiolase family K00626,K07508 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 430.0
LYD2_k127_3853210_2 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007097 406.0
LYD2_k127_3853210_3 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 299.0
LYD2_k127_3853210_4 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 291.0
LYD2_k127_3853210_5 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000007326 205.0
LYD2_k127_3868779_0 PFAM Lysine exporter protein (LYSE YGGA) - - - 0.000000000000000000000000000000000000000000000000003086 190.0
LYD2_k127_3868779_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K14161 - - 0.00000000000000000000000000000000000000000000000004576 202.0
LYD2_k127_3868779_2 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000838 156.0
LYD2_k127_3868779_3 Helix-turn-helix domain K07729 - - 0.000000000000000000001731 102.0
LYD2_k127_3868779_4 recA bacterial DNA recombination protein - - - 0.000000000000000000002046 104.0
LYD2_k127_3868779_5 Divergent 4Fe-4S mono-cluster - - - 0.00000000000000003644 83.0
LYD2_k127_3868779_6 - - - - 0.000004978 53.0
LYD2_k127_3879507_0 Nucleotidyl transferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009076 350.0
LYD2_k127_3879507_1 MoeA C-terminal region (domain IV) K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000126 233.0
LYD2_k127_3879507_2 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000001131 138.0
LYD2_k127_3879507_3 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000001524 129.0
LYD2_k127_3879507_4 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.0000000000000000000000000279 113.0
LYD2_k127_3879507_5 Putative regulatory protein - - - 0.000000000000006138 89.0
LYD2_k127_3879507_6 Serine aminopeptidase, S33 - - - 0.0000006545 63.0
LYD2_k127_3890583_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 3.253e-210 679.0
LYD2_k127_3890583_1 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006249 409.0
LYD2_k127_3890583_10 DNA uptake protein and related DNA-binding K02237 - - 0.00000183 59.0
LYD2_k127_3890583_11 peptidyl-tyrosine sulfation - - - 0.000007442 58.0
LYD2_k127_3890583_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005205 265.0
LYD2_k127_3890583_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007462 252.0
LYD2_k127_3890583_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000006013 203.0
LYD2_k127_3890583_5 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000979 192.0
LYD2_k127_3890583_6 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000007713 153.0
LYD2_k127_3890583_7 photosystem II stabilization - - - 0.000000000000000000000000000002665 133.0
LYD2_k127_3890583_8 Signal peptidase (SPase) II K03101 - 3.4.23.36 0.000000000000000000000000004393 115.0
LYD2_k127_3890583_9 PFAM secretion protein HlyD family protein K01993 - - 0.0000000000004596 80.0
LYD2_k127_3891433_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 616.0
LYD2_k127_3891433_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 582.0
LYD2_k127_3891433_2 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000001655 164.0
LYD2_k127_3891433_4 Rhodanese-like domain - - - 0.00000000000000000000000000000000001649 142.0
LYD2_k127_3891433_5 Biogenesis protein - - - 0.000000000000000000000000007176 122.0
LYD2_k127_3891433_6 - - - - 0.0003092 49.0
LYD2_k127_3910988_0 Glyceraldehyde-3-phosphate dehydrogenase K00150 - 1.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 418.0
LYD2_k127_3910988_1 OST-HTH/LOTUS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007042 342.0
LYD2_k127_3910988_2 calcium, potassium:sodium antiporter activity K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003758 262.0
LYD2_k127_3910988_3 - K07018 - - 0.0000000000000000000000000000000000000000004808 165.0
LYD2_k127_3910988_4 Memo-like protein K06990 - - 0.00000000000000000000000000000000000002737 160.0
LYD2_k127_3910988_5 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000005086 138.0
LYD2_k127_3910988_6 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000001949 135.0
LYD2_k127_3910988_7 thiolester hydrolase activity K17362 - - 0.00000000000000005566 87.0
LYD2_k127_3913814_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 2.391e-311 977.0
LYD2_k127_3913814_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008477 286.0
LYD2_k127_3913814_2 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000003476 166.0
LYD2_k127_3913814_3 methyltransferase activity - - - 0.000000000000000000000000000000000000008565 154.0
LYD2_k127_3913814_4 Acetyltransferase (GNAT) family - - - 0.0000008588 53.0
LYD2_k127_3920761_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 479.0
LYD2_k127_3920761_1 Elongation factor SelB winged helix 3 K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 426.0
LYD2_k127_3920761_10 Probable zinc-ribbon domain - - - 0.000000000000000000000000000000118 128.0
LYD2_k127_3920761_11 Yqey-like protein K09117 - - 0.0000000000000000000000000000002587 127.0
LYD2_k127_3920761_12 CYTH K05873 - 4.6.1.1 0.00000000000000000000003418 112.0
LYD2_k127_3920761_13 Helix-hairpin-helix motif K02237 - - 0.00000000000004092 80.0
LYD2_k127_3920761_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 353.0
LYD2_k127_3920761_3 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 313.0
LYD2_k127_3920761_4 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 307.0
LYD2_k127_3920761_5 UbiA prenyltransferase family K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001005 297.0
LYD2_k127_3920761_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007263 289.0
LYD2_k127_3920761_7 Deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000000000000000001586 223.0
LYD2_k127_3920761_8 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000004059 165.0
LYD2_k127_3920761_9 PFAM Nucleotidyl transferase K00966 - 2.7.7.13 0.0000000000000000000000000000000005004 147.0
LYD2_k127_3921022_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261 - 1.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 549.0
LYD2_k127_3921022_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 387.0
LYD2_k127_3921022_10 Polymer-forming cytoskeletal - - - 0.000000004206 67.0
LYD2_k127_3921022_2 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 353.0
LYD2_k127_3921022_3 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000003964 273.0
LYD2_k127_3921022_4 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000992 246.0
LYD2_k127_3921022_5 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005317 244.0
LYD2_k127_3921022_6 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000001485 187.0
LYD2_k127_3921022_7 ECF sigma factor K03088 - - 0.00000000000000000000000000000007164 144.0
LYD2_k127_3921022_8 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000002619 123.0
LYD2_k127_3921022_9 peptidyl-tyrosine sulfation - - - 0.00000000007444 70.0
LYD2_k127_3935919_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 497.0
LYD2_k127_3935919_1 Acetamidase formamidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 337.0
LYD2_k127_3935919_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000008341 136.0
LYD2_k127_3935919_3 thyroxine 5'-deiodinase activity K01562 GO:0003674,GO:0003824,GO:0004800,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006575,GO:0006590,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008430,GO:0009987,GO:0010817,GO:0016020,GO:0016491,GO:0018958,GO:0042403,GO:0042445,GO:0044237,GO:0044464,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901360,GO:1901564,GO:1901615 1.21.99.4 0.00000000000000000000000000005161 120.0
LYD2_k127_3935919_4 Metallo-peptidase family M12 - - - 0.000000000000007665 89.0
LYD2_k127_3935919_5 Predicted membrane protein (DUF2127) - - - 0.00000000173 72.0
LYD2_k127_3935919_6 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000007185 63.0
LYD2_k127_3935919_7 - - - - 0.0001545 47.0
LYD2_k127_3935919_8 gluconolactonase activity - - - 0.0008715 51.0
LYD2_k127_3952357_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 368.0
LYD2_k127_3952357_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 346.0
LYD2_k127_3952357_2 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000698 331.0
LYD2_k127_3952357_3 PFAM outer membrane efflux protein - - - 0.00000163 60.0
LYD2_k127_3952357_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00001636 58.0
LYD2_k127_3953112_0 - K12065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 344.0
LYD2_k127_3953112_1 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000177 273.0
LYD2_k127_3953112_10 PFAM Iron permease FTR1 K07243 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000001446 98.0
LYD2_k127_3953112_11 Protein of unknown function (DUF4230) - - - 0.00000007239 62.0
LYD2_k127_3953112_12 - - - - 0.0008963 51.0
LYD2_k127_3953112_2 Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue K00809 - 2.5.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000007324 264.0
LYD2_k127_3953112_3 TonB-dependent Receptor Plug Domain K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000006247 253.0
LYD2_k127_3953112_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000303 189.0
LYD2_k127_3953112_5 PFAM 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000004056 184.0
LYD2_k127_3953112_6 - - - - 0.00000000000000000000000000000000001526 142.0
LYD2_k127_3953112_7 FMN binding K03612 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000002957 139.0
LYD2_k127_3953363_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007322 365.0
LYD2_k127_3953363_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.000000000000000000000000000000000000000000000000000000000000000000000007314 256.0
LYD2_k127_3953363_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.00000000000000000000000000000000000000000000000000000000465 219.0
LYD2_k127_3953363_3 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000423 215.0
LYD2_k127_3953363_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000001531 180.0
LYD2_k127_3953363_5 DinB family - - - 0.000000000000000000000000000000000006402 142.0
LYD2_k127_3953363_6 PFAM YbbR-like protein - - - 0.000000001305 71.0
LYD2_k127_3954923_0 Pkd domain containing protein K12567 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000008085 274.0
LYD2_k127_3954923_1 antibiotic catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000293 260.0
LYD2_k127_3954923_2 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000002675 156.0
LYD2_k127_3954923_3 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000006662 154.0
LYD2_k127_3954923_4 Metallo-peptidase family M12 - - - 0.000000000000000000000000000003731 139.0
LYD2_k127_3954923_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000006444 85.0
LYD2_k127_3958839_0 Involved in the tonB-independent uptake of proteins - - - 7.361e-223 721.0
LYD2_k127_3958839_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005333 398.0
LYD2_k127_3959927_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005597 576.0
LYD2_k127_3962137_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 525.0
LYD2_k127_3962137_1 homoserine kinase activity K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001426 285.0
LYD2_k127_3962137_2 alcohol dehydrogenase K00008 - 1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001721 276.0
LYD2_k127_3962137_3 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000557 271.0
LYD2_k127_3962137_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000008294 210.0
LYD2_k127_3962137_5 Protein involved in outer membrane biogenesis K07289,K07290 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0032386,GO:0032879,GO:0032880,GO:0033157,GO:0044464,GO:0050789,GO:0051049,GO:0051223,GO:0060341,GO:0065007,GO:0070201,GO:0071944,GO:0090087,GO:0090313,GO:1903533,GO:1903827,GO:1905475 - 0.0001766 54.0
LYD2_k127_3966032_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 433.0
LYD2_k127_3966032_1 7TM-HD extracellular K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 418.0
LYD2_k127_3966032_2 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 393.0
LYD2_k127_3966032_3 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 349.0
LYD2_k127_3966032_4 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006275,GO:0008150,GO:0008156,GO:0009889,GO:0009890,GO:0009892,GO:0010556,GO:0010558,GO:0010605,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019219,GO:0019222,GO:0030174,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032297,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051302,GO:0051781,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:2000104,GO:2000112,GO:2000113 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001425 288.0
LYD2_k127_3966032_5 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000004637 227.0
LYD2_k127_3966032_6 CBS domain containing protein K03699 - - 0.00000000000000000000000000000000000000000000000000000000000002598 237.0
LYD2_k127_3966032_7 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000002126 210.0
LYD2_k127_3966032_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000002789 104.0
LYD2_k127_3975179_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 8.781e-211 668.0
LYD2_k127_3975179_1 5'-nucleotidase K01081,K01119,K11751 - 3.1.3.5,3.1.3.6,3.1.4.16,3.6.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 362.0
LYD2_k127_3975179_2 TIGRFAM phytoene desaturase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009238 331.0
LYD2_k127_3975179_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0030312,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000001684 250.0
LYD2_k127_3975179_4 phosphorelay signal transduction system - - - 0.0003521 45.0
LYD2_k127_3983831_0 protein conserved in bacteria K09955 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004731 598.0
LYD2_k127_3983831_1 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 327.0
LYD2_k127_3983831_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.00000000000000000000000000000000000000000000000000000000000000000001079 248.0
LYD2_k127_3983831_3 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.0000000000000006896 78.0
LYD2_k127_3988501_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005003 336.0
LYD2_k127_3993597_0 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000131 287.0
LYD2_k127_3993597_1 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000001045 209.0
LYD2_k127_3993597_2 DinB family - - - 0.0000000000000000000000000000000000000000000002404 171.0
LYD2_k127_3993597_3 Protein of unknown function (DUF1203) - - - 0.000000000000000000000000000000000000000000001573 169.0
LYD2_k127_3993597_4 - - - - 0.000000000000001695 81.0
LYD2_k127_3995935_0 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000253 337.0
LYD2_k127_3995935_1 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 304.0
LYD2_k127_3995935_2 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000000000001336 189.0
LYD2_k127_3995935_3 cytochrome - - - 0.00000000000000000000000000000000000000000387 168.0
LYD2_k127_3995935_4 MerR, DNA binding - - - 0.0000000000000000000000000000148 123.0
LYD2_k127_3995935_5 Protein conserved in bacteria K07465 - - 0.00000000000000001879 85.0
LYD2_k127_3995935_6 helix_turn_helix, Lux Regulon - - - 0.0000000007609 63.0
LYD2_k127_3995935_7 polysaccharide catabolic process K01179 - 3.2.1.4 0.0000001558 56.0
LYD2_k127_3995935_8 Pfam:DUF1628 - - - 0.00004701 55.0
LYD2_k127_4013212_0 cell shape determining protein MreB K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 518.0
LYD2_k127_4013212_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 448.0
LYD2_k127_4013212_2 Penicillin-binding protein 2 K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002384 369.0
LYD2_k127_4013212_3 peptidyl-prolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000008022 270.0
LYD2_k127_4013212_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000003848 183.0
LYD2_k127_4013212_5 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000000007523 156.0
LYD2_k127_4013212_6 PFAM FecR protein - - - 0.0000000000000000000008901 109.0
LYD2_k127_4013212_7 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000003856 99.0
LYD2_k127_4016517_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000001123 203.0
LYD2_k127_4016517_1 phosphotransferase related to Ser Thr protein kinases K07102 GO:0000166,GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0006022,GO:0006040,GO:0006082,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0017076,GO:0019200,GO:0019752,GO:0030203,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046835,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.1.221 0.0000000000000000000000000002977 130.0
LYD2_k127_4016517_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000001526 70.0
LYD2_k127_4016517_3 Glycine oxidase K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19 0.00000001205 65.0
LYD2_k127_4025455_0 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007995 346.0
LYD2_k127_4025455_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000001481 212.0
LYD2_k127_4025455_2 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000002567 182.0
LYD2_k127_4025455_3 Periplasmic binding protein K02016,K06858 - - 0.0000000000000000000000000002374 128.0
LYD2_k127_4030233_0 Cytochrome C oxidase subunit II, periplasmic domain K00376 - 1.7.2.4 9.925e-260 803.0
LYD2_k127_4030233_1 Periplasmic copper-binding protein (NosD) K07218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 601.0
LYD2_k127_4030233_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K01760 - 4.4.1.8 0.00000000000000000000000000000000002346 141.0
LYD2_k127_4030233_11 lipoprotein involved in nitrous oxide reduction K19342 - - 0.0000000000000000000000000000000004624 149.0
LYD2_k127_4030233_12 - - - - 0.00000000000000000000000000000002041 140.0
LYD2_k127_4030233_13 methylamine metabolic process - - - 0.00000000000000000000000000000007608 138.0
LYD2_k127_4030233_14 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000002592 136.0
LYD2_k127_4030233_15 Uncharacterized conserved protein (DUF2249) - - - 0.00000000000000000000002155 112.0
LYD2_k127_4030233_2 benzoyl-CoA reductase K04113 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 592.0
LYD2_k127_4030233_3 BadF/BadG/BcrA/BcrD ATPase family K04114 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 468.0
LYD2_k127_4030233_4 ABC transporter K01990,K19340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005769 356.0
LYD2_k127_4030233_5 ABC-2 family transporter protein K19341 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 313.0
LYD2_k127_4030233_6 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003589 308.0
LYD2_k127_4030233_7 lipoprotein involved in nitrous oxide reduction - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002306 276.0
LYD2_k127_4030233_8 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005604 291.0
LYD2_k127_4030233_9 - - - - 0.000000000000000000000000000000000000000000000000000000054 217.0
LYD2_k127_4047175_0 Sortilin, neurotensin receptor 3, - - - 0.0 1377.0
LYD2_k127_4047175_1 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000006647 125.0
LYD2_k127_4047175_2 chaperone-mediated protein folding - - - 0.0000000001141 73.0
LYD2_k127_4047175_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000001973 65.0
LYD2_k127_4047175_4 Protein tyrosine kinase - - - 0.00000003884 66.0
LYD2_k127_4047175_5 AntiSigma factor - - - 0.0007648 49.0
LYD2_k127_4052453_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 364.0
LYD2_k127_4052453_1 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003791 258.0
LYD2_k127_4052453_10 Short-chain dehydrogenase reductase sdr K00059 - 1.1.1.100 0.00000005289 55.0
LYD2_k127_4052453_2 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000003237 132.0
LYD2_k127_4052453_3 TPM domain - - - 0.000000000000000000000000000000001093 137.0
LYD2_k127_4052453_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000003466 136.0
LYD2_k127_4052453_5 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000000000000512 110.0
LYD2_k127_4052453_6 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 GO:0003674,GO:0005488,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113 - 0.00000000000000000000004835 104.0
LYD2_k127_4052453_7 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000007456 90.0
LYD2_k127_4052453_8 DNA polymerase III, delta' K02340 - 2.7.7.7 0.00000000000001147 87.0
LYD2_k127_4052453_9 Sortilin, neurotensin receptor 3, - - - 0.0000000006126 71.0
LYD2_k127_4055560_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 3.9e-204 672.0
LYD2_k127_4055560_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000008639 201.0
LYD2_k127_4055560_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000001228 175.0
LYD2_k127_4055560_3 Single-stranded DNA-binding protein K03111 - - 0.00000000000000000000000000000000000000000003278 164.0
LYD2_k127_4055560_4 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000001137 181.0
LYD2_k127_4055560_5 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000002946 138.0
LYD2_k127_4055560_6 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.0000000000000000000000005437 116.0
LYD2_k127_4055560_7 Peptidase M22 glycoprotease K14742 - - 0.0000000000000000557 89.0
LYD2_k127_4055560_8 Protein of unknown function (DUF465) - - - 0.00001132 51.0
LYD2_k127_4056805_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000907 226.0
LYD2_k127_4056805_1 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000008547 138.0
LYD2_k127_4056805_2 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000000000000000009416 108.0
LYD2_k127_4056805_3 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.0000000000001657 84.0
LYD2_k127_4080502_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009908 603.0
LYD2_k127_4080502_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 532.0
LYD2_k127_4080502_2 epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005171 269.0
LYD2_k127_4080502_3 zinc transporter K07238 - - 0.0000000000000000000000000000000000000000000000000000000000000001298 229.0
LYD2_k127_409517_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 613.0
LYD2_k127_409517_1 Cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006097 377.0
LYD2_k127_409517_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000003021 181.0
LYD2_k127_409517_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000009055 66.0
LYD2_k127_4103335_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 4.446e-220 690.0
LYD2_k127_4103335_1 cytochrome c nitrite reductase K15876 - - 0.000000000000000000000000000000000000000000000000000000006013 203.0
LYD2_k127_4103335_2 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000002734 158.0
LYD2_k127_4103335_4 Pfam Methyltransferase - - - 0.000000008641 62.0
LYD2_k127_4103335_5 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000001419 66.0
LYD2_k127_4118785_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007514 548.0
LYD2_k127_4118785_1 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034613,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051234,GO:0051641,GO:0055085,GO:0070727,GO:0071944,GO:0072657,GO:0089705,GO:0097159,GO:0097367,GO:0098796,GO:0098797,GO:1901265,GO:1901363,GO:1990778 - 0.0000000000000000000000000000000000000145 163.0
LYD2_k127_4118785_2 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000008658 119.0
LYD2_k127_4124586_0 Belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000392 612.0
LYD2_k127_4124586_1 Bacterial extracellular solute-binding protein K11069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 309.0
LYD2_k127_4124586_2 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000000000000000000000000008012 188.0
LYD2_k127_4132834_0 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.00000000000000000000000000000004699 134.0
LYD2_k127_4132834_1 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.000000000000000000000000003538 123.0
LYD2_k127_4132834_2 peptidase - - - 0.0000000000000000000000005838 119.0
LYD2_k127_4161503_0 PFAM DAHP synthetase I KDSA K03856,K04518,K14170 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 2.5.1.54,4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 457.0
LYD2_k127_4161503_1 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000000000002548 205.0
LYD2_k127_4161503_2 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K07106 - 4.2.1.126 0.000000000000000000000000000000000000000000008757 181.0
LYD2_k127_4161503_3 Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides K03478 - 3.5.1.105 0.0000000000000000000000000000000000001191 152.0
LYD2_k127_4161503_4 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000004187 152.0
LYD2_k127_4161503_5 Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis K06208 GO:0003674,GO:0003824,GO:0004106,GO:0006082,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044281,GO:0046417,GO:0071704 5.4.99.5 0.0000000000000000000000000000000006469 135.0
LYD2_k127_4161503_6 sensory box sensor histidine kinase VC1084 imported - - - 0.000000000000006484 80.0
LYD2_k127_4168107_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007571 504.0
LYD2_k127_4168107_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000001919 211.0
LYD2_k127_4168107_2 Bacterial Ig-like domain (group 2) - - - 0.000001544 57.0
LYD2_k127_4169152_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 597.0
LYD2_k127_4169152_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002821 251.0
LYD2_k127_4169152_2 Ferric uptake regulator family K09825 - - 0.0000000000000000000000007282 109.0
LYD2_k127_4273590_0 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000001267 180.0
LYD2_k127_4273590_1 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000215 171.0
LYD2_k127_4273590_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000002679 81.0
LYD2_k127_4273590_3 MerR HTH family regulatory protein K13640 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.000001383 55.0
LYD2_k127_435208_0 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008409 517.0
LYD2_k127_435208_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003279 300.0
LYD2_k127_435208_2 deaminase K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000000000000001228 223.0
LYD2_k127_435208_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000001316 150.0
LYD2_k127_435208_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000001316 129.0
LYD2_k127_435208_5 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00000000000002167 87.0
LYD2_k127_435208_6 Integral membrane sensor hybrid histidine kinase - - - 0.000001417 61.0
LYD2_k127_4356296_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0 1204.0
LYD2_k127_4356296_1 - - - - 0.000000000000000115 82.0
LYD2_k127_4368838_0 Releases the N-terminal proline from various substrates K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 349.0
LYD2_k127_4368838_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000006433 234.0
LYD2_k127_4368838_2 metallopeptidase activity K01993,K13408,K16922 - - 0.0000000000000000000000000000000000000000000000000003048 214.0
LYD2_k127_4368838_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993,K16922 - - 0.0000000000000000000000000000000000172 158.0
LYD2_k127_4368838_4 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000002854 94.0
LYD2_k127_4368838_5 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000002116 66.0
LYD2_k127_4368838_6 Putative zinc-finger - - - 0.000000009243 67.0
LYD2_k127_4402656_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 583.0
LYD2_k127_4402656_1 PFAM OsmC family protein - - - 0.000000000000000000000000000000000000000000000000000000000001074 215.0
LYD2_k127_4402656_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000328 97.0
LYD2_k127_441082_0 Isocitrate/isopropylmalate dehydrogenase K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 385.0
LYD2_k127_441082_1 Cysteine dioxygenase type I K00456 - 1.13.11.20 0.0000000000002848 78.0
LYD2_k127_4446079_0 Prolyl oligopeptidase - - - 6.14e-266 833.0
LYD2_k127_4446079_1 Ammonium Transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003796 545.0
LYD2_k127_4446079_2 amine oxidase K00276 - 1.4.3.21 0.00000000000000000000000000000000004527 141.0
LYD2_k127_4451615_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009371 608.0
LYD2_k127_4451615_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 567.0
LYD2_k127_4451615_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 378.0
LYD2_k127_4451615_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 330.0
LYD2_k127_4451615_4 ABC-type spermidine putrescine transport system, permease component I K11071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004388 265.0
LYD2_k127_4451615_5 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000005888 194.0
LYD2_k127_4451615_6 Uncharacterized protein conserved in bacteria (DUF2155) - - - 0.00000000000000000008197 106.0
LYD2_k127_4451615_7 PFAM regulatory protein, MerR - - - 0.000000000000006783 81.0
LYD2_k127_44612_0 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000004363 237.0
LYD2_k127_4487298_0 desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 315.0
LYD2_k127_4487298_1 Flavin containing amine oxidoreductase K06954 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 293.0
LYD2_k127_4487298_2 Alanine racemase K20757 - 4.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 294.0
LYD2_k127_4487298_3 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000008062 189.0
LYD2_k127_4487298_4 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000000001679 144.0
LYD2_k127_4487298_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000002678 61.0
LYD2_k127_4488960_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 370.0
LYD2_k127_4488960_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000005846 266.0
LYD2_k127_4488960_2 Amino acid kinase family K00926 - 2.7.2.2 0.00000000000000000000000000000000000000000000000463 177.0
LYD2_k127_4488960_3 Belongs to the HAM1 NTPase family K02428 - 3.6.1.66 0.000000000000000000000000000000000001831 144.0
LYD2_k127_4488960_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000001054 64.0
LYD2_k127_4500368_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 581.0
LYD2_k127_4500368_1 Beta-eliminating lyase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 303.0
LYD2_k127_4500368_2 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.0000000000000000000000000000000000000000000000000002441 189.0
LYD2_k127_4500368_3 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000007169 166.0
LYD2_k127_4500368_4 Lipocalin-like domain - - - 0.00000000000000000000000000002963 123.0
LYD2_k127_4500368_5 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000001985 103.0
LYD2_k127_4500368_6 Glycosyl transferase, family 2 K00786 - - 0.0000000000000000161 94.0
LYD2_k127_4500368_7 SMART Transport-associated and nodulation - - - 0.00002707 55.0
LYD2_k127_4515985_0 Phosphoglucose isomerase K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007417 421.0
LYD2_k127_4515985_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000008951 175.0
LYD2_k127_4515985_2 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000001008 102.0
LYD2_k127_4515985_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.0000000000000002113 90.0
LYD2_k127_4515985_4 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity K02372 - 4.2.1.59 0.00000165 57.0
LYD2_k127_4516022_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 4.118e-245 794.0
LYD2_k127_4516022_1 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005334 531.0
LYD2_k127_4516022_2 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000262 181.0
LYD2_k127_4516022_3 O-antigen ligase - - - 0.0002808 53.0
LYD2_k127_4525446_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 472.0
LYD2_k127_4525446_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000115 279.0
LYD2_k127_4525446_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.000000000000000000000000000000000000000000000000000007588 201.0
LYD2_k127_4525446_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000341 166.0
LYD2_k127_4525446_4 Hit family K02503 - - 0.00000000000000000000000000000000001509 154.0
LYD2_k127_4532424_0 Zinc carboxypeptidase - - - 3.536e-228 742.0
LYD2_k127_4532424_1 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 346.0
LYD2_k127_4532424_2 Domain of Unknown Function (DUF1259) - - - 0.000000000000000000000000000000000000000000000000000572 186.0
LYD2_k127_4532424_3 Calcineurin-like phosphoesterase K01077 - 3.1.3.1 0.00000000000000000000000000000002894 130.0
LYD2_k127_4532424_4 PBS lyase HEAT-like repeat K05386 - - 0.0001207 55.0
LYD2_k127_4535688_0 Mur ligase middle domain protein K02558 - 6.3.2.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 400.0
LYD2_k127_4535688_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000006706 168.0
LYD2_k127_4535688_2 Protein of unknown function (DUF1573) - - - 0.00000000000001704 86.0
LYD2_k127_4535688_3 Psort location CytoplasmicMembrane, score - - - 0.0001206 55.0
LYD2_k127_4536505_0 Protein of unknown function (DUF2867) - - - 3.569e-194 616.0
LYD2_k127_4536505_1 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008084 389.0
LYD2_k127_4536505_2 iron-sulfur cluster assembly K07400 - - 0.00000000000000000000000000000000000000000002449 169.0
LYD2_k127_4536505_3 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000008729 159.0
LYD2_k127_4543624_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 427.0
LYD2_k127_4543624_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 383.0
LYD2_k127_4543624_2 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 346.0
LYD2_k127_4543624_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000003146 258.0
LYD2_k127_4543624_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000001431 239.0
LYD2_k127_4543624_5 spore germination - - - 0.0000000000000000000000000000000000000000000000000000003846 210.0
LYD2_k127_4543624_6 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000931 140.0
LYD2_k127_4543624_7 peptidyl-tyrosine sulfation - - - 0.0000000004159 71.0
LYD2_k127_4543624_8 SprT-like family - - - 0.0000984 52.0
LYD2_k127_4545444_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 3.624e-265 833.0
LYD2_k127_4545444_1 Transglycosylase K05366 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0008955,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042546,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 524.0
LYD2_k127_4545444_10 Could be involved in septation K06412 - - 0.0000000000000000000000007371 117.0
LYD2_k127_4545444_11 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000009748 109.0
LYD2_k127_4545444_12 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000003541 87.0
LYD2_k127_4545444_13 Predicted membrane protein (DUF2232) - - - 0.0001606 53.0
LYD2_k127_4545444_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006187 418.0
LYD2_k127_4545444_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000001624 183.0
LYD2_k127_4545444_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000001668 164.0
LYD2_k127_4545444_5 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000000003126 164.0
LYD2_k127_4545444_6 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000018 143.0
LYD2_k127_4545444_7 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000001872 145.0
LYD2_k127_4545444_8 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000003359 126.0
LYD2_k127_4545444_9 domain, Protein - - - 0.00000000000000000000000002139 126.0
LYD2_k127_4553266_0 Protein of unknown function (DUF2961) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 503.0
LYD2_k127_4553266_1 Protein of unknown function (DUF3224) - - - 0.0000000000000000000000000000000000000008306 153.0
LYD2_k127_4553266_2 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000000000002183 147.0
LYD2_k127_4553266_3 TfoX N-terminal domain - - - 0.000000000000000000000000007197 113.0
LYD2_k127_4553266_4 alpha beta - - - 0.0000000000000000369 83.0
LYD2_k127_4553266_5 - - - - 0.0000001569 59.0
LYD2_k127_4553266_6 Carboxypeptidase regulatory-like domain - - - 0.0004034 51.0
LYD2_k127_4555614_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008303 563.0
LYD2_k127_4555614_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007552 436.0
LYD2_k127_4555614_2 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 353.0
LYD2_k127_4555614_3 - - - - 0.00005963 48.0
LYD2_k127_4561491_0 WD40 domain protein beta Propeller K12132 - 2.7.11.1 4.872e-253 808.0
LYD2_k127_4561491_1 WD40 domain protein beta Propeller K12132 - 2.7.11.1 2.132e-243 785.0
LYD2_k127_4561491_2 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 630.0
LYD2_k127_4561491_3 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008837 617.0
LYD2_k127_4561491_4 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 577.0
LYD2_k127_4561491_5 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 501.0
LYD2_k127_4580270_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01585 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 566.0
LYD2_k127_4580270_1 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008167 518.0
LYD2_k127_4580270_2 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 445.0
LYD2_k127_4580270_3 BadF BadG BcrA BcrD - - - 0.0000000000000000000000000000000000000002367 174.0
LYD2_k127_4580270_4 SIS domain K07106 - 4.2.1.126 0.00000000000000000001644 95.0
LYD2_k127_4580270_5 Belongs to the UPF0337 (CsbD) family - - - 0.0009201 45.0
LYD2_k127_4607875_0 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008506 355.0
LYD2_k127_4607875_1 glycosyl transferase family 2 K12984 - - 0.0000000000000000000000000001958 135.0
LYD2_k127_4607875_2 glycosyl transferase, family 39 - - - 0.000000002922 70.0
LYD2_k127_4607875_3 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon - - - 0.0007534 52.0
LYD2_k127_4610213_0 PFAM glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 372.0
LYD2_k127_4610213_1 MFS/sugar transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 365.0
LYD2_k127_4610213_2 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000001355 165.0
LYD2_k127_4610213_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000002621 106.0
LYD2_k127_4626047_0 Protein export membrane protein K03296,K18138 - - 0.0 1071.0
LYD2_k127_4626047_1 Sulfate permease family - - - 4.056e-222 701.0
LYD2_k127_4626047_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 447.0
LYD2_k127_4627889_0 LytTr DNA-binding domain K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000414 249.0
LYD2_k127_4627889_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000004936 220.0
LYD2_k127_4627889_2 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000001016 233.0
LYD2_k127_4627889_3 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000001297 205.0
LYD2_k127_4627889_4 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000000347 214.0
LYD2_k127_4627889_5 - - - - 0.00000000000000000000000000000000000000000000001027 189.0
LYD2_k127_4627889_6 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000007643 171.0
LYD2_k127_4627889_7 Involved in the TonB-independent uptake of proteins K03641 - - 0.00004768 52.0
LYD2_k127_4644380_0 Belongs to the beta-ketoacyl-ACP synthases family K14660 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 494.0
LYD2_k127_4644380_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000185 119.0
LYD2_k127_4644380_2 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000001207 69.0
LYD2_k127_466258_0 Bacterial membrane protein, YfhO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004027 297.0
LYD2_k127_466258_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001172 270.0
LYD2_k127_466258_2 3-demethylubiquinone-9 3-O-methyltransferase activity K20444 - - 0.000000000000000000000000000000000000000000000000000000000001484 240.0
LYD2_k127_466258_4 TIGRFAM polysaccharide pyruvyl transferase CsaB - - - 0.0000000000000000000000000000000000000000000001866 194.0
LYD2_k127_466258_5 arylsulfatase activity K01133 - 3.1.6.6 0.00000000000000000000000000000000000000001182 167.0
LYD2_k127_4670485_0 Insulinase (Peptidase family M16) K07263 - - 3.544e-200 633.0
LYD2_k127_4670485_1 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006971 564.0
LYD2_k127_4670485_10 RNA recognition motif - - - 0.000000000000000000000000001612 119.0
LYD2_k127_4670485_11 Biopolymer transport protein K03559,K03560 - - 0.00007287 49.0
LYD2_k127_4670485_12 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.0001243 51.0
LYD2_k127_4670485_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006435 423.0
LYD2_k127_4670485_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 398.0
LYD2_k127_4670485_4 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 340.0
LYD2_k127_4670485_5 alpha/beta hydrolase fold K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000118 291.0
LYD2_k127_4670485_6 Fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001969 290.0
LYD2_k127_4670485_7 SUF system FeS assembly protein, NifU family K04488 - - 0.00000000000000000000000000000000000000000000000000004768 209.0
LYD2_k127_4670485_8 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000001243 190.0
LYD2_k127_4670485_9 Pfam:DUF59 - - - 0.0000000000000000000000000000000000000000000000003051 192.0
LYD2_k127_470630_0 ABC transporter substrate-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008842 443.0
LYD2_k127_470630_1 transmembrane transport K02025,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 362.0
LYD2_k127_470630_2 ABC-type sugar transport system, permease component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009206 334.0
LYD2_k127_470630_3 PFAM Glycoside hydrolase 15-related - - - 0.000000000000000000000000000000000005747 154.0
LYD2_k127_4777149_0 phosphorylase K00688 - 2.4.1.1 3.378e-210 679.0
LYD2_k127_4777149_1 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 569.0
LYD2_k127_4777149_2 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 515.0
LYD2_k127_4777149_3 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002825 344.0
LYD2_k127_4777149_4 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 301.0
LYD2_k127_4777149_5 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000009341 149.0
LYD2_k127_4777149_6 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000002635 109.0
LYD2_k127_4801027_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1588.0
LYD2_k127_4801027_1 Oligoendopeptidase f - - - 2.533e-256 807.0
LYD2_k127_4801027_11 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000473 94.0
LYD2_k127_4801027_2 ERAP1-like C-terminal domain K01263 - 3.4.11.14 2.415e-216 755.0
LYD2_k127_4801027_3 protein kinase activity - - - 9.099e-198 647.0
LYD2_k127_4801027_4 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 375.0
LYD2_k127_4801027_5 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006372 312.0
LYD2_k127_4801027_6 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000001556 256.0
LYD2_k127_4801027_7 wide pore channel activity K07267 - - 0.00000000000000000000000000000000000000000000008774 188.0
LYD2_k127_4801027_8 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000005934 156.0
LYD2_k127_4815227_0 MacB-like periplasmic core domain - - - 2.272e-196 644.0
LYD2_k127_4815227_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000002575 153.0
LYD2_k127_4815227_2 PFAM Cation H exchanger K03316 - - 0.000000000000000000000000000000004056 131.0
LYD2_k127_4815227_3 Transcriptional regulator PadR-like family - - - 0.0000000005797 60.0
LYD2_k127_4865821_0 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007821 389.0
LYD2_k127_4865821_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002777 287.0
LYD2_k127_4865821_2 NmrA-like family - - - 0.00000000000000000000000000000000000000000000006819 176.0
LYD2_k127_4865821_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000002862 119.0
LYD2_k127_4865821_4 Ketosteroid K06893 - - 0.000000000000000000000000004464 127.0
LYD2_k127_4865821_5 - - - - 0.0000000000000000000000007364 112.0
LYD2_k127_4875927_0 N-Acetylmuramoyl-L-alanine amidase K01448,K02172 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001156 297.0
LYD2_k127_4875927_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000001021 227.0
LYD2_k127_4875927_2 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.00000000000000000000000000000000000000000002068 166.0
LYD2_k127_4875927_3 Protein of unknown function (DUF2662) - - - 0.000000000004313 78.0
LYD2_k127_4875927_4 Adenylate cyclase - - - 0.00000000001013 77.0
LYD2_k127_4875927_5 Trypsin-like peptidase domain - - - 0.0001802 55.0
LYD2_k127_4923347_0 Peptidase M56 - - - 0.00000000000000001228 96.0
LYD2_k127_4923347_1 Peptidase M56 - - - 0.00000000000000004206 94.0
LYD2_k127_4923347_2 Protein of unknown function, DUF547 - - - 0.00002032 49.0
LYD2_k127_494503_0 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 520.0
LYD2_k127_494503_1 Molybdopterin oxidoreductase K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 310.0
LYD2_k127_494503_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00122,K00335 - 1.17.1.9,1.6.5.3 0.000000000000000000000000000000000000000000000000000008253 197.0
LYD2_k127_4995164_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 7.199e-231 735.0
LYD2_k127_4995164_1 Belongs to the SIS family. GutQ KpsF subfamily K01627,K03281,K06041 - 2.5.1.55,5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 325.0
LYD2_k127_4995164_2 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 292.0
LYD2_k127_4995164_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002133 297.0
LYD2_k127_4995164_4 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000002686 272.0
LYD2_k127_4995164_5 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000001794 213.0
LYD2_k127_4995164_6 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000007316 197.0
LYD2_k127_4995164_7 - - - - 0.00000000000000000001261 105.0
LYD2_k127_4995164_8 SNARE associated Golgi protein K03975 - - 0.0000000003092 62.0
LYD2_k127_4995164_9 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 0.00009244 52.0
LYD2_k127_50037_0 Prokaryotic cytochrome b561 - - - 0.0 1103.0
LYD2_k127_50037_1 formate dehydrogenase - - - 2.185e-227 732.0
LYD2_k127_50037_10 - - - - 0.000000000000000000000000000000000000000171 160.0
LYD2_k127_50037_11 PFAM CBS domain containing protein K07168 - - 0.0000000000000000000000003817 117.0
LYD2_k127_50037_12 Universal stress protein - - - 0.0000000000000000000392 102.0
LYD2_k127_50037_13 PFAM Cold-shock protein, DNA-binding - - - 0.00000000000000000005391 94.0
LYD2_k127_50037_14 Universal stress protein - - - 0.00000000000000002958 89.0
LYD2_k127_50037_15 Tyrosine phosphatase family - - - 0.00000000001478 76.0
LYD2_k127_50037_16 - - - - 0.00000000003886 76.0
LYD2_k127_50037_18 Helix-turn-helix domain - - - 0.0000004091 61.0
LYD2_k127_50037_19 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000001495 49.0
LYD2_k127_50037_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 615.0
LYD2_k127_50037_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 532.0
LYD2_k127_50037_4 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 379.0
LYD2_k127_50037_5 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 376.0
LYD2_k127_50037_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003309 289.0
LYD2_k127_50037_7 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004777 282.0
LYD2_k127_50037_8 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000001206 236.0
LYD2_k127_50037_9 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000000000000000000000000000000000000000000002018 224.0
LYD2_k127_5090577_0 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 486.0
LYD2_k127_5090577_1 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 297.0
LYD2_k127_5090577_2 AI-2E family transporter - - - 0.000000000000000000000000000000000002688 152.0
LYD2_k127_5090577_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000000001434 133.0
LYD2_k127_5090577_4 phosphorelay signal transduction system - - - 0.000000000000000000000000009069 121.0
LYD2_k127_5090577_5 chlorophyll binding - - - 0.00000000000000001867 96.0
LYD2_k127_5096874_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000423 464.0
LYD2_k127_5096874_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 453.0
LYD2_k127_5096874_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 331.0
LYD2_k127_5096874_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000003092 159.0
LYD2_k127_5096874_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000009956 123.0
LYD2_k127_5096874_5 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000002196 119.0
LYD2_k127_5096874_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000004558 110.0
LYD2_k127_5096874_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000001412 49.0
LYD2_k127_5098015_0 AcrB/AcrD/AcrF family - - - 0.0 1101.0
LYD2_k127_5098015_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 7.639e-251 829.0
LYD2_k127_5098015_10 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.000000000000003463 81.0
LYD2_k127_5098015_11 Sulfurtransferase - - - 0.0000000000004624 84.0
LYD2_k127_5098015_13 Outer membrane efflux protein - - - 0.0000001677 64.0
LYD2_k127_5098015_2 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 528.0
LYD2_k127_5098015_3 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 474.0
LYD2_k127_5098015_4 Putative zinc-finger K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008268 346.0
LYD2_k127_5098015_5 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001077 258.0
LYD2_k127_5098015_6 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000001237 205.0
LYD2_k127_5098015_7 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.000000000000000000000000000000000000000002692 160.0
LYD2_k127_5098015_8 Peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000002321 118.0
LYD2_k127_5098015_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000156 101.0
LYD2_k127_5106112_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008508 563.0
LYD2_k127_5106112_1 PFAM Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 356.0
LYD2_k127_5106112_2 mannose-6-phosphate isomerase - - - 0.000000000000000000000000000000000000007929 164.0
LYD2_k127_5106112_3 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000006829 94.0
LYD2_k127_5106112_4 DNA replication protein DnaC K02315 - - 0.0000001173 63.0
LYD2_k127_5109190_0 Belongs to the enoyl-CoA hydratase isomerase family K01782,K01825 - 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 578.0
LYD2_k127_5109190_1 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005847 524.0
LYD2_k127_5109190_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 514.0
LYD2_k127_5109190_3 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008156 451.0
LYD2_k127_5109190_4 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.0000000000000000000000000000001085 138.0
LYD2_k127_5121938_0 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 0.0 1268.0
LYD2_k127_5121938_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 490.0
LYD2_k127_5121938_2 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 390.0
LYD2_k127_5121938_3 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 336.0
LYD2_k127_5121938_4 TIGRFAM Lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.0000000000000000000000000000000000000000000000000000004467 219.0
LYD2_k127_5121938_5 - - - - 0.00000000000000000000002225 117.0
LYD2_k127_5121938_6 O-Antigen ligase - - - 0.0004282 53.0
LYD2_k127_5134014_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000004985 251.0
LYD2_k127_5134014_1 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000000000000005617 263.0
LYD2_k127_5134014_2 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000000001984 175.0
LYD2_k127_5134014_3 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.0000000000000000000000000000000000000001107 172.0
LYD2_k127_5134014_4 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000004236 155.0
LYD2_k127_5134014_5 PFAM Radical SAM - - - 0.00000000000000000000000000000008715 145.0
LYD2_k127_5134014_6 - - - - 0.0000000002006 66.0
LYD2_k127_5134014_7 ig-like, plexins, transcription factors - - - 0.000001209 62.0
LYD2_k127_5134014_8 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00004516 48.0
LYD2_k127_5135057_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 573.0
LYD2_k127_5135057_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 540.0
LYD2_k127_5135057_2 Permease, YjgP YjgQ - - - 0.000000000000000000000000007581 116.0
LYD2_k127_5135057_3 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 - 2.1.1.171 0.0000000000000000000001509 109.0
LYD2_k127_5135057_4 Acid phosphatase homologues - - - 0.000000000000000000001178 109.0
LYD2_k127_5138611_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 408.0
LYD2_k127_5138611_1 Phospholipase D Transphosphatidylase K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006566 343.0
LYD2_k127_5138611_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 313.0
LYD2_k127_5138611_3 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009178 286.0
LYD2_k127_5138611_4 PFAM LemA family protein K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000009831 241.0
LYD2_k127_5138611_5 TPM domain K06872 - - 0.000000000000000000000000000000000000000000000000000002991 199.0
LYD2_k127_5138611_6 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.0000000000000000000000000000000000000000000000000004623 200.0
LYD2_k127_5138611_7 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000004579 105.0
LYD2_k127_5138611_8 PFAM Uncharacterised BCR, COG1649 - - - 0.000000000000000000002371 99.0
LYD2_k127_5145657_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 4.611e-243 779.0
LYD2_k127_5145657_1 Heat shock 70 kDa protein K04043 - - 2.65e-236 746.0
LYD2_k127_5145657_10 Peptidase, M23 family - - - 0.00000000000000000000000000000000000003894 158.0
LYD2_k127_5145657_11 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.000000000000000000000000000000000002872 145.0
LYD2_k127_5145657_12 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000007478 124.0
LYD2_k127_5145657_13 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000005764 123.0
LYD2_k127_5145657_14 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000009754 97.0
LYD2_k127_5145657_15 Domain of unknown function (DUF2520) - - - 0.0000000000000001849 89.0
LYD2_k127_5145657_16 Modulates RecA activity K03565 - - 0.0001823 50.0
LYD2_k127_5145657_2 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 535.0
LYD2_k127_5145657_3 Magnesium chelatase, subunit ChlI K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 481.0
LYD2_k127_5145657_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 416.0
LYD2_k127_5145657_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 377.0
LYD2_k127_5145657_6 DnaJ central domain K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 357.0
LYD2_k127_5145657_7 GTP binding K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000109 275.0
LYD2_k127_5145657_8 Lytic transglycosylase catalytic K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008617 272.0
LYD2_k127_5145657_9 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000009939 233.0
LYD2_k127_5145766_0 MOSC domain - - - 0.000000000000000000000000000000000000000000000000109 184.0
LYD2_k127_5145766_1 HlyD membrane-fusion protein of T1SS K01993 - - 0.00000000000000000000000000000000000000000002508 186.0
LYD2_k127_5145766_2 outer membrane efflux protein - - - 0.00000000000000000000000000000006946 144.0
LYD2_k127_5145766_3 Bacterial regulatory proteins, tetR family - - - 0.0000002591 62.0
LYD2_k127_5146236_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008462 528.0
LYD2_k127_5146236_1 PFAM Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 467.0
LYD2_k127_5146236_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 335.0
LYD2_k127_5146236_3 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005486 315.0
LYD2_k127_5146236_4 PFAM Band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 311.0
LYD2_k127_5146236_5 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000000004818 189.0
LYD2_k127_5146236_6 NmrA-like family - - - 0.00000000000000000000000000000000000000000003186 186.0
LYD2_k127_5146236_7 Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000002273 151.0
LYD2_k127_5149046_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 316.0
LYD2_k127_5149046_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 305.0
LYD2_k127_5149046_2 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 321.0
LYD2_k127_5149046_3 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000525 217.0
LYD2_k127_5149046_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000008075 212.0
LYD2_k127_5149046_5 riboflavin synthase, alpha K00793 - 2.5.1.9 0.0000000000000000000000003253 112.0
LYD2_k127_5149046_6 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000001209 75.0
LYD2_k127_515250_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1062.0
LYD2_k127_515250_1 Sugar (and other) transporter - - - 2.952e-245 766.0
LYD2_k127_515250_10 Histidine kinase - - - 0.000001692 60.0
LYD2_k127_515250_11 DNA-sulfur modification-associated - - - 0.000002481 59.0
LYD2_k127_515250_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 486.0
LYD2_k127_515250_3 Extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 469.0
LYD2_k127_515250_4 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000005137 227.0
LYD2_k127_515250_5 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000001701 211.0
LYD2_k127_515250_6 PFAM EAL domain - - - 0.00000000000000000000000000008216 129.0
LYD2_k127_515250_7 S4 RNA-binding domain K04762 - - 0.0000000000000002466 84.0
LYD2_k127_515250_8 - - - - 0.00000000000000032 83.0
LYD2_k127_515250_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000387 85.0
LYD2_k127_5154402_0 Catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate K00294 - 1.2.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 595.0
LYD2_k127_5154402_1 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 518.0
LYD2_k127_5154402_2 Cys/Met metabolism PLP-dependent enzyme K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 405.0
LYD2_k127_5154402_3 Phospholipase_D-nuclease N-terminal - - - 0.0000189 57.0
LYD2_k127_5156405_0 Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 600.0
LYD2_k127_5156405_1 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 407.0
LYD2_k127_5156405_2 Protein of unknown function (DUF1295) - - - 0.000000000000000000000000000000000000000000000000000000000003306 211.0
LYD2_k127_5156405_3 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000003231 172.0
LYD2_k127_5165255_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 561.0
LYD2_k127_5165255_1 Dihydroxyacetone kinase family K07030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 444.0
LYD2_k127_5165255_10 Peptidase family M23 K21472 - - 0.00000000000000000000000000000001038 139.0
LYD2_k127_5165255_11 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000002831 87.0
LYD2_k127_5165255_12 - - - - 0.0000000000004142 83.0
LYD2_k127_5165255_13 - - - - 0.00000001405 68.0
LYD2_k127_5165255_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 420.0
LYD2_k127_5165255_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 430.0
LYD2_k127_5165255_4 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000364 216.0
LYD2_k127_5165255_5 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000003462 192.0
LYD2_k127_5165255_6 PFAM membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.00000000000000000000000000000000000000000004763 177.0
LYD2_k127_5165255_7 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000009131 180.0
LYD2_k127_5165255_8 lipase activity K15349 - - 0.00000000000000000000000000000000000000008753 174.0
LYD2_k127_5165255_9 glycine decarboxylation via glycine cleavage system K02437 - - 0.00000000000000000000000000000000001601 153.0
LYD2_k127_5174443_0 regulation of DNA-templated transcription, elongation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 455.0
LYD2_k127_5174443_1 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 356.0
LYD2_k127_5174443_2 PFAM Peptidase M11 gametolysin - - - 0.0000000000000000000000000000000000000000000000000002516 209.0
LYD2_k127_5174443_3 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000004796 164.0
LYD2_k127_5174443_4 - - - - 0.0000000000000000000000000000000000005461 145.0
LYD2_k127_5174443_5 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000002784 141.0
LYD2_k127_5174443_6 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000002573 136.0
LYD2_k127_5174443_7 Type III secretion system lipoprotein chaperone (YscW) - - - 0.000000000000000000005837 103.0
LYD2_k127_5174443_8 Acid phosphatase homologues K19302 - 3.6.1.27 0.0000000000000000000378 94.0
LYD2_k127_5191877_0 Belongs to the ClpA ClpB family K03696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000421 516.0
LYD2_k127_5191877_1 Belongs to the ClpA ClpB family K03696 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007425 397.0
LYD2_k127_5191877_10 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000001042 139.0
LYD2_k127_5191877_11 outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000002227 70.0
LYD2_k127_5191877_12 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00002662 48.0
LYD2_k127_5191877_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003769 347.0
LYD2_k127_5191877_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 337.0
LYD2_k127_5191877_4 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K00856 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0004001,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005975,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019200,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032550,GO:0032552,GO:0032553,GO:0032554,GO:0032555,GO:0032559,GO:0032560,GO:0032561,GO:0032567,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046390,GO:0046483,GO:0046835,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.15,2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 313.0
LYD2_k127_5191877_5 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001127 284.0
LYD2_k127_5191877_6 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000002685 268.0
LYD2_k127_5191877_7 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001142 269.0
LYD2_k127_5191877_8 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000003782 218.0
LYD2_k127_5191877_9 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.000000000000000000000000000000000000000000000005729 185.0
LYD2_k127_5195675_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.00000000000000000000000000000000006397 152.0
LYD2_k127_5195675_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000001703 143.0
LYD2_k127_5195675_2 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000009549 117.0
LYD2_k127_5195675_3 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 0.000000005114 68.0
LYD2_k127_5195675_4 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000001361 64.0
LYD2_k127_5199322_0 PFAM Fatty acid desaturase K04712 - 1.14.18.5,1.14.19.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 363.0
LYD2_k127_5199322_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 351.0
LYD2_k127_5199322_2 Phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000798 287.0
LYD2_k127_5199322_3 Binding-protein-dependent transport system inner membrane component K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000005566 243.0
LYD2_k127_5199322_4 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000112 224.0
LYD2_k127_5199322_5 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.000000000000000000000000000002069 138.0
LYD2_k127_5199322_6 TOBE domain - - - 0.00000000000000000000000000001284 127.0
LYD2_k127_5199322_7 TIGRFAM TonB family protein K03832 - - 0.0000000000005548 78.0
LYD2_k127_5200485_0 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000002222 252.0
LYD2_k127_5200485_1 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000005268 155.0
LYD2_k127_5200485_2 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000001691 166.0
LYD2_k127_5200485_3 Calx-beta domain - - - 0.00000000000000000000000001085 117.0
LYD2_k127_52066_1 Radical SAM superfamily - - - 0.000000000000000000000000000000000004429 159.0
LYD2_k127_52066_2 Iron-sulfur cluster-binding domain - - - 0.000000000000000005702 99.0
LYD2_k127_52066_3 Glycosyltransferase like family 2 - - - 0.0000000000000006396 88.0
LYD2_k127_52066_4 methyltransferase - - - 0.0000000003446 69.0
LYD2_k127_52066_5 - - - - 0.00000001708 61.0
LYD2_k127_5214051_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 5.627e-218 698.0
LYD2_k127_5214051_1 Belongs to the PstS family K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 398.0
LYD2_k127_5214051_10 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000003532 196.0
LYD2_k127_5214051_11 PFAM regulatory protein, MerR K22491 - - 0.0000000000000000000000000000000000000000000005495 177.0
LYD2_k127_5214051_12 His Kinase A (phospho-acceptor) domain K07636 - 2.7.13.3 0.0000000000000155 84.0
LYD2_k127_5214051_13 - - - - 0.0000000000002872 83.0
LYD2_k127_5214051_2 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007115 379.0
LYD2_k127_5214051_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 369.0
LYD2_k127_5214051_4 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004182 331.0
LYD2_k127_5214051_5 Phosphate transport system permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 304.0
LYD2_k127_5214051_6 Histidinol phosphate phosphatase, HisJ family K04486 - 3.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000003659 244.0
LYD2_k127_5214051_7 PHP domain protein K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000002029 232.0
LYD2_k127_5214051_8 TIGRFAM hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 - 2.4.1.80 0.00000000000000000000000000000000000000000000000000000000001119 227.0
LYD2_k127_5214051_9 PFAM response regulator receiver K02483,K07658,K07668 - - 0.0000000000000000000000000000000000000000000000000000000002342 213.0
LYD2_k127_5214891_0 Carboxypeptidase regulatory-like domain - - - 2.117e-195 643.0
LYD2_k127_5214891_1 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000001731 185.0
LYD2_k127_5214891_2 - - - - 0.0000000000000000000000000000000000000000002645 166.0
LYD2_k127_5214891_3 glycosyl transferase K20444 - - 0.000000000000000000000000000539 122.0
LYD2_k127_5234081_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005015 541.0
LYD2_k127_5234081_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 447.0
LYD2_k127_5234081_2 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005336 344.0
LYD2_k127_5234081_3 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000001174 238.0
LYD2_k127_5234081_4 SMART protein phosphatase 2C domain protein K07315 - 3.1.3.3 0.00000000000000000000000000000000000000007829 171.0
LYD2_k127_5234081_5 Putative cyclase - - - 0.000000000000000000000000000000000007492 154.0
LYD2_k127_5234175_0 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000265 578.0
LYD2_k127_5234175_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009318 278.0
LYD2_k127_5234175_2 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309,K11103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000005785 234.0
LYD2_k127_5234175_3 - - - - 0.000000000000000000000000000000000000000000000000002991 194.0
LYD2_k127_5236141_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 404.0
LYD2_k127_5236141_1 Serine phosphatase RsbU, regulator of sigma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 344.0
LYD2_k127_5236141_2 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005207 271.0
LYD2_k127_5236141_3 Protein of unknown function (DUF4243) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001997 251.0
LYD2_k127_5236141_4 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000001926 236.0
LYD2_k127_5236141_5 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000006447 171.0
LYD2_k127_5236141_6 PFAM Sulfate transporter antisigma-factor antagonist STAS K04749,K04757 - 2.7.11.1 0.0000000000000000000000005395 112.0
LYD2_k127_5236141_7 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000003712 81.0
LYD2_k127_5236141_8 STAS domain K04749 - - 0.00000000005376 72.0
LYD2_k127_5269078_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 9.747e-259 811.0
LYD2_k127_5269078_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 351.0
LYD2_k127_5269078_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 320.0
LYD2_k127_5269078_3 PFAM phospholipase D Transphosphatidylase K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003584 262.0
LYD2_k127_5269078_4 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000001014 168.0
LYD2_k127_5269078_5 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000561 138.0
LYD2_k127_5269078_6 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.0000000000000000002911 102.0
LYD2_k127_5269078_7 Metallo-peptidase family M12 - - - 0.00000004255 55.0
LYD2_k127_5269078_8 - - - - 0.0009553 51.0
LYD2_k127_5288743_0 Elongation factor G, domain IV K02355 - - 5.167e-202 638.0
LYD2_k127_5288743_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000003253 233.0
LYD2_k127_5288743_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000002203 222.0
LYD2_k127_5302282_0 Stage II sporulation protein E K07315 - 3.1.3.3 0.000000000000000000000000000000000000000004641 164.0
LYD2_k127_5302282_1 Tetratricopeptide repeat - - - 0.0001746 54.0
LYD2_k127_5311713_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000002756 260.0
LYD2_k127_5311713_1 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000003101 196.0
LYD2_k127_5311713_2 prohibitin homologues - - - 0.000000000000000000000000003572 117.0
LYD2_k127_5311713_3 Sporulation and spore germination - - - 0.0000000000000578 86.0
LYD2_k127_5311957_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 478.0
LYD2_k127_5311957_1 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000003921 229.0
LYD2_k127_5311957_2 histone H2A K63-linked ubiquitination K10914 - - 0.0000000000000000000000000000000000001336 154.0
LYD2_k127_5311957_3 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000006553 123.0
LYD2_k127_5311957_4 - - - - 0.000000000002404 80.0
LYD2_k127_5311957_5 Putative adhesin - - - 0.000000000009631 78.0
LYD2_k127_5311957_6 Putative zinc-finger - - - 0.0007057 48.0
LYD2_k127_5313303_0 3-demethylubiquinone-9 3-O-methyltransferase activity K07011,K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 382.0
LYD2_k127_5313303_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001743 260.0
LYD2_k127_5313303_2 PFAM glycosyl transferase family 39 K14340 - - 0.00000000000000000000000000000000000000000000000000002238 214.0
LYD2_k127_5313303_3 Oligosaccharyl transferase STT3 subunit K07151 - 2.4.99.18 0.0000000000000000000000000000000504 145.0
LYD2_k127_5313303_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000006898 106.0
LYD2_k127_5313303_5 - - - - 0.00001795 58.0
LYD2_k127_5325527_0 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 2.012e-271 870.0
LYD2_k127_5325527_1 peptidase - - - 0.000000000000000000000000000000000000000008117 168.0
LYD2_k127_5325527_2 regulation of translation K03530 - - 0.00000000000000000000000000000002057 134.0
LYD2_k127_5328310_0 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009864 594.0
LYD2_k127_5328310_1 Metallo-peptidase family M12 - - - 0.00000000000000000000000000000000000006288 164.0
LYD2_k127_5328310_2 Membrane - - - 0.000000000000000000000000000009129 127.0
LYD2_k127_5328310_3 Protein of unknown function (DUF2959) - - - 0.0000000005973 69.0
LYD2_k127_53450_0 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003901 449.0
LYD2_k127_53450_1 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005641 396.0
LYD2_k127_53450_2 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000002827 170.0
LYD2_k127_53450_3 Alpha/beta hydrolase family - - - 0.000000000000000000000000000003482 120.0
LYD2_k127_5348606_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K11177 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 392.0
LYD2_k127_5348606_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001992 314.0
LYD2_k127_5348606_2 2Fe-2S -binding K13483 - - 0.00000000000000000000000000000000000000000000000000000448 206.0
LYD2_k127_5348606_3 Transcriptional regulator PadR-like family - - - 0.00000000000002057 80.0
LYD2_k127_5348606_4 Domain of unknown function (DUF4149) - - - 0.0002198 51.0
LYD2_k127_5353714_0 Belongs to the PdxS SNZ family K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 419.0
LYD2_k127_5353714_1 Alanine-glyoxylate amino-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000009495 237.0
LYD2_k127_5353714_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway - - - 0.000000000000000000000000000000000000000000000000001219 189.0
LYD2_k127_5353714_3 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.00000000000000000000000000000000000000000000000001075 198.0
LYD2_k127_5353714_4 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000003447 150.0
LYD2_k127_5363978_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695,K03696 - - 0.0 1078.0
LYD2_k127_5363978_1 P-type ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 302.0
LYD2_k127_5363978_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 309.0
LYD2_k127_5363978_3 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000008474 241.0
LYD2_k127_5363978_4 Cupredoxin-like domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000002493 141.0
LYD2_k127_5363978_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000179 117.0
LYD2_k127_53735_0 Dehydrogenase E1 component K11381 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 365.0
LYD2_k127_53735_1 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 325.0
LYD2_k127_53735_2 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000006311 196.0
LYD2_k127_53735_3 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000002829 200.0
LYD2_k127_53735_4 Oxidoreductase NAD-binding domain K02823 - - 0.0000000000000000000000000000000000000000000001262 177.0
LYD2_k127_53735_5 Membrane domain of glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000001374 128.0
LYD2_k127_53735_6 membrane transporter protein K07090 - - 0.0000000000000000000000000001367 118.0
LYD2_k127_5379854_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 1.076e-242 764.0
LYD2_k127_5379854_1 CoA carboxylase activity K01968 - 6.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 475.0
LYD2_k127_5379854_2 Aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 379.0
LYD2_k127_5379854_3 PFAM pyruvate carboxyltransferase K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 353.0
LYD2_k127_5379854_4 PFAM Enoyl-CoA hydratase isomerase K13766,K15312 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000004464 251.0
LYD2_k127_5379854_5 response regulator - - - 0.0000000000000000000000000000000000006959 156.0
LYD2_k127_5379854_6 Acetyl propionyl-CoA carboxylase alpha subunit K01968 - 6.4.1.4 0.00000000000000000006644 105.0
LYD2_k127_5381080_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005237 363.0
LYD2_k127_5381080_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008643 295.0
LYD2_k127_5381080_2 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.000000000000000000000000000000000000000000000000000000000008772 216.0
LYD2_k127_5381080_3 Prolyl oligopeptidase family - - - 0.000000000006722 76.0
LYD2_k127_5400023_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004449 473.0
LYD2_k127_5400023_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000004393 150.0
LYD2_k127_5400023_2 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000000000000000001834 149.0
LYD2_k127_5400023_3 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.0000000000000000000000009095 108.0
LYD2_k127_5505072_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 358.0
LYD2_k127_5505072_1 - - - - 0.000000000000000000000000000000000000000000000000002334 185.0
LYD2_k127_5505072_2 MacB-like periplasmic core domain - - - 0.00000000000000000007514 92.0
LYD2_k127_5547291_0 Phosphoesterase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 608.0
LYD2_k127_5547291_1 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000243 214.0
LYD2_k127_5547291_2 Dehydrogenase K00001,K18369 - 1.1.1.1 0.0000000000000000000000000000000000000004005 151.0
LYD2_k127_5547291_3 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000938 128.0
LYD2_k127_5547291_4 - - - - 0.0000000000002026 73.0
LYD2_k127_5547291_5 - - - - 0.000000005532 59.0
LYD2_k127_5555238_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 3.832e-201 646.0
LYD2_k127_5555238_1 Heavy-metal resistance - - - 0.00000004023 61.0
LYD2_k127_5555238_2 Protein phosphatase 2C 70-like K01090 GO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050408,GO:0071704,GO:0071944,GO:0140096,GO:1901564 3.1.3.16 0.0004832 49.0
LYD2_k127_5561349_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 477.0
LYD2_k127_5561349_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000006192 188.0
LYD2_k127_5666138_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005545 580.0
LYD2_k127_5666138_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003848 518.0
LYD2_k127_5666138_10 FR47-like protein K03789 - 2.3.1.128 0.00000000000000000001138 103.0
LYD2_k127_5666138_11 Domain of unknown function DUF11 - - - 0.000000000001348 81.0
LYD2_k127_5666138_12 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0008138 45.0
LYD2_k127_5666138_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 381.0
LYD2_k127_5666138_3 PFAM Formiminotransferase K00603 - 2.1.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 351.0
LYD2_k127_5666138_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K13599 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000001393 254.0
LYD2_k127_5666138_5 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000009274 179.0
LYD2_k127_5666138_6 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.00000000000000000000000000000000005037 145.0
LYD2_k127_5666138_7 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000005528 144.0
LYD2_k127_5666138_8 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.00000000000000000000000591 114.0
LYD2_k127_5666138_9 domain, Protein - - - 0.0000000000000000000000523 115.0
LYD2_k127_5689580_0 Protein of unknown function (DUF1254) - - - 4.229e-217 686.0
LYD2_k127_5689580_1 PDZ DHR GLGF domain protein K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 340.0
LYD2_k127_5689580_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000001935 165.0
LYD2_k127_5689580_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000001495 81.0
LYD2_k127_5703686_0 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 356.0
LYD2_k127_5703686_1 Enoyl-CoA hydratase K07539,K18570 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 319.0
LYD2_k127_5703686_2 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000006863 191.0
LYD2_k127_5703686_3 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000001209 154.0
LYD2_k127_5709367_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000006692 200.0
LYD2_k127_5709367_1 PFAM Copper binding periplasmic protein CusF K07152 - - 0.000000000000000000000000000000000000000006185 166.0
LYD2_k127_5709367_2 Domain of unknown function (DUF4198) - - - 0.00000000000000000000000000000000001712 141.0
LYD2_k127_5709367_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000009163 64.0
LYD2_k127_5720616_0 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 542.0
LYD2_k127_5720616_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K04105,K04110 - 6.2.1.25,6.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 466.0
LYD2_k127_5720616_2 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000537 274.0
LYD2_k127_5720616_3 Pfam Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004509 271.0
LYD2_k127_5720616_4 transcriptional regulator (MarR - - - 0.000000000000000000000000002174 117.0
LYD2_k127_5720616_5 Beta-lactamase - - - 0.0000000000002733 83.0
LYD2_k127_5721740_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000001403 231.0
LYD2_k127_5721740_1 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000009892 141.0
LYD2_k127_5721740_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000001459 98.0
LYD2_k127_5721740_3 protein kinase activity - - - 0.0000000000000000000369 106.0
LYD2_k127_5721740_4 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000002459 64.0
LYD2_k127_5738068_0 PFAM FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 565.0
LYD2_k127_5738068_1 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 504.0
LYD2_k127_5738068_2 PFAM Cytochrome b b6 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 400.0
LYD2_k127_5738068_3 Cytochrome b(C-terminal)/b6/petD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 391.0
LYD2_k127_5738068_4 Protein of unknown function (DUF2400) - - - 0.0000000000000000000000000000000000000000000000000000000000006272 226.0
LYD2_k127_5738068_5 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000000000000000000000000000000001483 196.0
LYD2_k127_5738068_6 Thioredoxin-like - - - 0.0000000000000000000000001166 113.0
LYD2_k127_5738068_7 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000002083 79.0
LYD2_k127_5741981_0 Drug exporters of the RND superfamily K06994,K07003,K20466,K20470 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009273,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0040007,GO:0042546,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071554,GO:0071702,GO:0071766,GO:0071840,GO:0071944,GO:1901264 - 6.546e-198 659.0
LYD2_k127_5741981_1 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000004119 183.0
LYD2_k127_5743649_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 2.607e-268 831.0
LYD2_k127_5743649_1 Lipase maturation factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 458.0
LYD2_k127_5743649_2 ABC transporter K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 381.0
LYD2_k127_5743649_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 320.0
LYD2_k127_5743649_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703,K20452 - 4.2.1.33,4.2.1.35,4.2.1.85 0.0000000000000000000000000000000000000000000000000000000000000000002029 254.0
LYD2_k127_5743649_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000001341 91.0
LYD2_k127_5752545_0 ErfK YbiS YcfS YnhG family protein K21470 - - 2.893e-207 660.0
LYD2_k127_5752545_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 579.0
LYD2_k127_5752545_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000001701 219.0
LYD2_k127_5752545_3 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000006371 128.0
LYD2_k127_5752545_4 Beta-lactamase - - - 0.00000000002012 70.0
LYD2_k127_5752545_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0040007,GO:0044424,GO:0044464,GO:0071944 2.1.1.163,2.1.1.201 0.00000002548 64.0
LYD2_k127_5752545_6 Recombinase zinc beta ribbon domain - - - 0.00001442 49.0
LYD2_k127_5762445_0 class II (D K and N) K01893 - 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 544.0
LYD2_k127_5762445_1 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 521.0
LYD2_k127_5762445_10 Probably functions as a manganese efflux pump - - - 0.0000000000000000001824 104.0
LYD2_k127_5762445_2 metal ion transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 524.0
LYD2_k127_5762445_3 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 405.0
LYD2_k127_5762445_4 Zinc-uptake complex component A periplasmic K02077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 347.0
LYD2_k127_5762445_5 ABC 3 transport family K02075 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 321.0
LYD2_k127_5762445_6 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000001465 247.0
LYD2_k127_5762445_7 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000001063 246.0
LYD2_k127_5762445_8 Heat shock protein DnaJ domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000001165 232.0
LYD2_k127_5762445_9 - - - - 0.00000000000000000000000000000000000000001052 162.0
LYD2_k127_5768055_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003352 468.0
LYD2_k127_5768055_1 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006868 267.0
LYD2_k127_5768055_2 Glycosyl hydrolases family 32 N-terminal domain K01193 - 3.2.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000001494 244.0
LYD2_k127_5768055_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000005647 225.0
LYD2_k127_5768055_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000009183 224.0
LYD2_k127_5768055_5 PFAM Phosphoribosyl transferase domain K07100 - - 0.00000000000000000000000000000000000000000000000000000727 200.0
LYD2_k127_5768055_6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.00000000000000000000000000000000000000000000000000007587 190.0
LYD2_k127_5768055_7 Glycosyl hydrolases family 32 N-terminal domain K01193 - 3.2.1.26 0.00000000000000000000000008708 108.0
LYD2_k127_5768055_8 KR domain - - - 0.0000000007864 63.0
LYD2_k127_5791126_0 Serine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 460.0
LYD2_k127_5791126_1 Aminopeptidase I zinc metalloprotease (M18) K01267 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 417.0
LYD2_k127_5791126_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 377.0
LYD2_k127_5791126_3 PFAM peptidase S11 D-alanyl-D-alanine carboxypeptidase K07258 - 3.4.16.4 0.0000000000000000000000000000000000000003242 160.0
LYD2_k127_5791126_4 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000002099 130.0
LYD2_k127_5791126_5 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.0000000000000000000000000000000264 145.0
LYD2_k127_5791126_6 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.00000000000000000006642 93.0
LYD2_k127_5794097_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 8.794e-215 695.0
LYD2_k127_5794097_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 7.582e-197 622.0
LYD2_k127_5794097_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002597 280.0
LYD2_k127_5794097_11 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001419 280.0
LYD2_k127_5794097_12 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000271 272.0
LYD2_k127_5794097_13 Squalene/phytoene synthase K00801 - 2.5.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000003275 257.0
LYD2_k127_5794097_14 PFAM phospholipase Carboxylesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000005349 243.0
LYD2_k127_5794097_15 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000000000000000000000000000000000000000000000000001751 239.0
LYD2_k127_5794097_16 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.000000000000000000000000000000000000000000000000000000000000000283 240.0
LYD2_k127_5794097_17 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000000000000000000000000000000009135 233.0
LYD2_k127_5794097_18 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000002314 244.0
LYD2_k127_5794097_19 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.0000000000000000000000000000000000000000000000000000000000153 226.0
LYD2_k127_5794097_2 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006664 616.0
LYD2_k127_5794097_20 - - - - 0.000000000000000000000000000000000000000000000000000000002537 214.0
LYD2_k127_5794097_21 lysyltransferase activity K07027 - - 0.000000000000000000000000000000000000000000000000000000003039 213.0
LYD2_k127_5794097_22 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K00966,K05305,K16881 - 2.7.1.52,2.7.7.13,5.4.2.8 0.0000000000000000000000000000000000000000000000000000008208 201.0
LYD2_k127_5794097_23 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01560,K07025,K20862 - 3.1.3.102,3.1.3.104,3.8.1.2 0.00000000000000000000000000000000000000000000000000000427 204.0
LYD2_k127_5794097_24 Predicted membrane protein (DUF2157) - - - 0.000000000000000000000000000005395 131.0
LYD2_k127_5794097_25 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000001154 132.0
LYD2_k127_5794097_26 Predicted periplasmic lipoprotein (DUF2279) - - - 0.000000000000002509 88.0
LYD2_k127_5794097_27 other phosphorylase family 1 K01243 - 3.2.2.9 0.000000000001736 78.0
LYD2_k127_5794097_28 - - - - 0.0000001704 64.0
LYD2_k127_5794097_3 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004391 609.0
LYD2_k127_5794097_4 ADP-glyceromanno-heptose 6-epimerase activity K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 361.0
LYD2_k127_5794097_5 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K00945,K02945,K03527 - 1.17.7.4,2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 378.0
LYD2_k127_5794097_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 366.0
LYD2_k127_5794097_7 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 332.0
LYD2_k127_5794097_8 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 330.0
LYD2_k127_5794097_9 PFAM Cys Met metabolism K01739,K01760,K01761 - 2.5.1.48,4.4.1.11,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 307.0
LYD2_k127_5801408_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 568.0
LYD2_k127_5801408_1 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 510.0
LYD2_k127_5801408_2 - - - - 0.00000000000146 76.0
LYD2_k127_5802630_0 Elongation factor G, domain IV K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 592.0
LYD2_k127_5802630_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002331 262.0
LYD2_k127_5802630_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000001052 278.0
LYD2_k127_5802630_3 YCII-related domain - - - 0.000002653 55.0
LYD2_k127_5831184_0 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000589 231.0
LYD2_k127_5831184_1 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000000007749 151.0
LYD2_k127_5831184_2 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000001007 137.0
LYD2_k127_5831184_3 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000000000000000000002545 126.0
LYD2_k127_5831184_4 LysM domain - - - 0.000000000003561 77.0
LYD2_k127_5831184_5 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.00000001924 64.0
LYD2_k127_5831184_6 PFAM sigma-54 factor interaction domain-containing protein - - - 0.0009014 46.0
LYD2_k127_5834277_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008252 392.0
LYD2_k127_5834277_1 Coenzyme A transferase K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 344.0
LYD2_k127_5834277_2 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01029 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 308.0
LYD2_k127_5834277_3 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000000000000000000000000000002689 228.0
LYD2_k127_5834277_4 PFAM Methyltransferase type - - - 0.0000000000000000000000000000009991 139.0
LYD2_k127_5846419_0 ATPase domain of DNA mismatch repair MUTS family K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 346.0
LYD2_k127_5846419_1 transglycosylase K08309 - - 0.0000000000000000000000000000000002844 153.0
LYD2_k127_5846419_2 nuclear chromosome segregation - - - 0.000000000000000000003623 107.0
LYD2_k127_5846419_3 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000003304 91.0
LYD2_k127_5897822_0 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 346.0
LYD2_k127_5897822_1 Metallo-peptidase family M12 - - - 0.00000000000000000000000000006847 135.0
LYD2_k127_5897822_2 tetratricopeptide repeat - - - 0.00000000000000000000000000007917 134.0
LYD2_k127_5897822_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000001473 85.0
LYD2_k127_5897822_5 amine dehydrogenase activity - - - 0.0000007198 61.0
LYD2_k127_5897822_6 S-layer homology domain - - - 0.0004692 52.0
LYD2_k127_5911352_0 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000000000000008927 251.0
LYD2_k127_5911352_1 COG2931 RTX toxins and related Ca2 -binding - - - 0.00000000000000000000000000000000000000000000001931 193.0
LYD2_k127_5911352_2 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000006342 148.0
LYD2_k127_5911352_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000005901 93.0
LYD2_k127_5911352_4 Metallo-peptidase family M12 - - - 0.00000000000004922 86.0
LYD2_k127_5911378_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.0 1096.0
LYD2_k127_5911378_1 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 444.0
LYD2_k127_5911378_2 Glycosyl hydrolase family 47 K01230 - 3.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 367.0
LYD2_k127_5911378_3 ROK family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 384.0
LYD2_k127_5911378_4 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008071 301.0
LYD2_k127_5921885_0 Transposase K02557,K07484,K13924,K21471 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000009882 268.0
LYD2_k127_5921885_1 Por secretion system C-terminal sorting domain-containing protein - - - 0.000000000000000001995 100.0
LYD2_k127_5921885_2 Protein conserved in bacteria K07465 - - 0.00002246 53.0
LYD2_k127_5922794_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000001156 263.0
LYD2_k127_5922794_1 Peptidase S53 propeptide K08677 - - 0.00000000000000000000000000000000000000000000000000000004332 216.0
LYD2_k127_5922794_2 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000004394 199.0
LYD2_k127_5922794_3 Rieske [2Fe-2S] domain - - - 0.0000000000000000000000000000000000000000006182 162.0
LYD2_k127_5922794_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.000000000000000007559 99.0
LYD2_k127_5922794_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000006174 79.0
LYD2_k127_5928300_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000528 485.0
LYD2_k127_5928300_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006668 248.0
LYD2_k127_5928300_2 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000001251 229.0
LYD2_k127_5928300_3 DSBA-like thioredoxin domain - - - 0.00000000000007877 86.0
LYD2_k127_5928300_4 Peptidase M56 - - - 0.0000000004223 71.0
LYD2_k127_5928300_5 Thioredoxin - - - 0.000008604 57.0
LYD2_k127_5928300_6 PDZ DHR GLGF domain protein - - - 0.00001204 58.0
LYD2_k127_5949426_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 9.402e-291 919.0
LYD2_k127_5949426_1 AMP-binding enzyme C-terminal domain K00666 - - 1.239e-231 730.0
LYD2_k127_5949426_10 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000003802 154.0
LYD2_k127_5949426_11 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950,K17488 - 2.7.6.3,3.5.4.39 0.00000000000000000000000000000000412 142.0
LYD2_k127_5949426_12 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000005185 136.0
LYD2_k127_5949426_13 diguanylate cyclase - - - 0.0000000000000000000000000001657 132.0
LYD2_k127_5949426_14 histone H2A K63-linked ubiquitination - - - 0.00000000000000000000000001437 124.0
LYD2_k127_5949426_15 Histidine kinase K01768,K12132 - 2.7.11.1,4.6.1.1 0.000000000000000004182 99.0
LYD2_k127_5949426_16 chaperone-mediated protein folding - - - 0.00000000000003684 87.0
LYD2_k127_5949426_17 long-chain fatty acid transporting porin activity - - - 0.000000000000143 84.0
LYD2_k127_5949426_18 Tetratricopeptide repeat - - - 0.0000000000003445 83.0
LYD2_k127_5949426_19 Protein of unknown function (FYDLN_acid) - - - 0.000000000001675 71.0
LYD2_k127_5949426_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 379.0
LYD2_k127_5949426_20 - - - - 0.0005313 51.0
LYD2_k127_5949426_3 4 iron, 4 sulfur cluster binding K00113,K00176,K05524,K13795,K13796 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 362.0
LYD2_k127_5949426_4 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 325.0
LYD2_k127_5949426_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 317.0
LYD2_k127_5949426_6 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000001177 247.0
LYD2_k127_5949426_7 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002548 244.0
LYD2_k127_5949426_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000007679 242.0
LYD2_k127_5949426_9 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000001317 175.0
LYD2_k127_5951406_0 phosphoribosylamine-glycine ligase activity K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 502.0
LYD2_k127_5951406_1 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 442.0
LYD2_k127_5951406_10 GGDEF domain - - - 0.00000000000000000000000000000000124 143.0
LYD2_k127_5951406_11 Adenylylsulfate kinase K00860 - 2.7.1.25 0.0000000000000000000000000000001963 138.0
LYD2_k127_5951406_2 belongs to the sigma-70 factor family K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005632 439.0
LYD2_k127_5951406_3 Cytochrome c554 and c-prime K03620 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005372 382.0
LYD2_k127_5951406_4 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 336.0
LYD2_k127_5951406_5 PFAM Serine threonine protein kinase-related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004004 296.0
LYD2_k127_5951406_6 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000003776 227.0
LYD2_k127_5951406_7 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000000001018 188.0
LYD2_k127_5951406_8 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.000000000000000000000000000000000000000000007853 170.0
LYD2_k127_5951406_9 YCII-related domain - - - 0.000000000000000000000000000000000000002833 150.0
LYD2_k127_5971860_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 419.0
LYD2_k127_5971860_1 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000001679 171.0
LYD2_k127_5971860_2 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000002458 139.0
LYD2_k127_5971860_3 PFAM blue (type 1) copper domain protein - - - 0.00005313 55.0
LYD2_k127_5991256_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 513.0
LYD2_k127_5991256_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000001173 218.0
LYD2_k127_5991256_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000009521 117.0
LYD2_k127_5991256_3 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000007271 104.0
LYD2_k127_6006220_0 GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 392.0
LYD2_k127_6006220_1 - - - - 0.000000000000000000000000000000000000000000002386 180.0
LYD2_k127_6015678_0 Bacterial sugar transferase K03606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005393 449.0
LYD2_k127_6015678_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002052 302.0
LYD2_k127_6015678_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001171 261.0
LYD2_k127_6015678_3 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000008443 186.0
LYD2_k127_6015678_4 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.000000000000000000000000000001512 128.0
LYD2_k127_6015678_5 Ribosomal L32p protein family K02911 - - 0.0000000000000000000001292 98.0
LYD2_k127_6015678_6 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000002271 106.0
LYD2_k127_6017685_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002436 271.0
LYD2_k127_6017685_1 amidohydrolase K07045 - - 0.00000000000000009077 83.0
LYD2_k127_6017685_2 Cys/Met metabolism PLP-dependent enzyme K00812,K14267 - 2.6.1.1,2.6.1.17 0.00000005049 54.0
LYD2_k127_6017685_3 - - - - 0.0000008143 59.0
LYD2_k127_6125422_0 Bacterial sugar transferase - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 402.0
LYD2_k127_6125422_1 Domain of unknown function (DUF1972) - - - 0.000000000000000000000000000000000000000000000000001902 188.0
LYD2_k127_6125422_2 PSP1 C-terminal conserved region - - - 0.0000000000000000000000000000000000000000000000004905 188.0
LYD2_k127_6125422_3 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000000005605 183.0
LYD2_k127_6125422_4 Hfq protein - - - 0.000000000000000000000000000001605 124.0
LYD2_k127_6125422_5 peptidase inhibitor activity - - - 0.0000000000000000229 92.0
LYD2_k127_6144460_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 602.0
LYD2_k127_6144460_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 500.0
LYD2_k127_6144460_2 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000001615 230.0
LYD2_k127_6144460_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000854 209.0
LYD2_k127_6144460_4 sigma factor antagonist activity K04757,K17752 - 2.7.11.1 0.000000000000000000000000000000000000000000001099 169.0
LYD2_k127_6144460_5 Major facilitator Superfamily - - - 0.000007018 51.0
LYD2_k127_6144460_6 DinB superfamily - - - 0.0004367 49.0
LYD2_k127_6168050_0 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000001967 206.0
LYD2_k127_6168050_1 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000005153 186.0
LYD2_k127_6168050_2 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000002465 161.0
LYD2_k127_6168050_3 zinc metalloprotease - - - 0.000000000001668 78.0
LYD2_k127_6168050_4 Sulfatase - - - 0.0000001392 59.0
LYD2_k127_6181971_0 Belongs to the aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 1.783e-209 661.0
LYD2_k127_6181971_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 475.0
LYD2_k127_6181971_2 Hydrolase CocE NonD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 389.0
LYD2_k127_6181971_3 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 300.0
LYD2_k127_6181971_4 Pfam:Arch_ATPase K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005861 288.0
LYD2_k127_6181971_5 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000002145 258.0
LYD2_k127_6181971_6 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000006232 179.0
LYD2_k127_6181971_7 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000004575 176.0
LYD2_k127_6181971_8 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000007543 83.0
LYD2_k127_6181971_9 Putative adhesin - - - 0.0000009951 60.0
LYD2_k127_6190035_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 309.0
LYD2_k127_6190035_1 Thioredoxin K03671 - - 0.00000000000000000000000000000000000003208 148.0
LYD2_k127_6190035_2 - - - - 0.00000000000000000000000000000000007712 143.0
LYD2_k127_6190035_3 Cation efflux family - - - 0.000000000000000000009543 100.0
LYD2_k127_6190035_4 ABC transporter - - - 0.0006878 52.0
LYD2_k127_6224796_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003858 273.0
LYD2_k127_6224796_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000003942 113.0
LYD2_k127_6224796_2 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000505 87.0
LYD2_k127_6224796_3 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.00000000000006636 82.0
LYD2_k127_6302028_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 574.0
LYD2_k127_6302028_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006873 329.0
LYD2_k127_6302028_2 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 302.0
LYD2_k127_6302028_3 Homocysteine S-methyltransferase K00547 - 2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000002724 252.0
LYD2_k127_6302028_5 Ribonuclease z K00784 - 3.1.26.11 0.00000000001305 69.0
LYD2_k127_6308160_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 414.0
LYD2_k127_6308160_1 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000461 187.0
LYD2_k127_6308160_2 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000001518 94.0
LYD2_k127_63415_0 Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity K06188 GO:0003674,GO:0005215,GO:0005372,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006833,GO:0006884,GO:0006950,GO:0006970,GO:0008150,GO:0008361,GO:0009628,GO:0009987,GO:0009992,GO:0015250,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0042044,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 350.0
LYD2_k127_63415_1 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 311.0
LYD2_k127_63415_2 PFAM Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000002796 263.0
LYD2_k127_63415_3 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000001885 241.0
LYD2_k127_63415_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000003258 203.0
LYD2_k127_63415_5 acyl-CoA thioester hydrolase, YbgC YbaW family K07107 - - 0.00000000000000000000000000001978 129.0
LYD2_k127_643056_0 Glycosyl hydrolase family 65, N-terminal domain K15923 - 3.2.1.51 3.905e-308 969.0
LYD2_k127_643056_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009028 610.0
LYD2_k127_643056_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 529.0
LYD2_k127_643056_3 Isocitrate lyase K01637 GO:0003674,GO:0003824,GO:0004451,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0006102,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046421,GO:0046487,GO:0071704,GO:0072350 4.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005184 481.0
LYD2_k127_643056_4 Glycosyl hydrolase family 47 K01230 - 3.2.1.113 0.00000000000000000000000000000000000000000000000000000000000002713 220.0
LYD2_k127_659044_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 1.705e-283 904.0
LYD2_k127_659044_1 Cyclic nucleotide-monophosphate binding domain - - - 3.624e-206 650.0
LYD2_k127_659044_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 464.0
LYD2_k127_659044_3 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002886 287.0
LYD2_k127_659044_4 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003961 277.0
LYD2_k127_659044_5 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000004009 251.0
LYD2_k127_659044_6 - - - - 0.0000000000000000000000001842 109.0
LYD2_k127_659044_7 - - - - 0.000000000000000000001329 104.0
LYD2_k127_671361_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 516.0
LYD2_k127_671361_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002148 273.0
LYD2_k127_671361_2 A G-specific K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000001731 253.0
LYD2_k127_671361_3 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000008211 186.0
LYD2_k127_671361_4 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.00000000000000000000000000000000000000000000001699 180.0
LYD2_k127_671361_5 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000003665 140.0
LYD2_k127_671361_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648,K18003 - 2.3.1.180,2.3.1.262 0.000000000000002474 76.0
LYD2_k127_671361_7 Phenylacetate-CoA oxygenase K15512 - 1.14.13.208 0.000001297 55.0
LYD2_k127_671361_8 Uncharacterised protein family (UPF0158) - - - 0.00008968 50.0
LYD2_k127_674859_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 318.0
LYD2_k127_674859_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001226 297.0
LYD2_k127_674859_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000001894 233.0
LYD2_k127_674859_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000331 237.0
LYD2_k127_674859_4 May be involved in the transport of PQQ or its precursor to the periplasm - - - 0.000000000000000000000000000000000000000005022 162.0
LYD2_k127_674859_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000419 49.0
LYD2_k127_679177_0 PFAM Sulfatase K01130 - 3.1.6.1 0.0 1367.0
LYD2_k127_679177_1 peptidase K07386 - - 2.775e-235 739.0
LYD2_k127_679177_2 regulation of DNA-templated transcription, elongation - - - 4.396e-196 636.0
LYD2_k127_679177_3 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008963 317.0
LYD2_k127_679177_4 Cadherin repeats. - - - 0.000000000000000000000000000000000000000000000000000000009002 224.0
LYD2_k127_679177_5 Nitroreductase family - - - 0.000000000000000000000000000000000000000004253 160.0
LYD2_k127_679177_6 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000002959 156.0
LYD2_k127_679177_7 helix_turn_helix, Arsenical Resistance Operon Repressor K03892,K21903 - - 0.000000000000000000000000007197 113.0
LYD2_k127_691003_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.851e-221 696.0
LYD2_k127_691003_1 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 301.0
LYD2_k127_70257_0 Peptidase family M13 K07386 - - 1.803e-252 797.0
LYD2_k127_70257_1 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.00000000000000000000000000000000015 141.0
LYD2_k127_70257_2 - - - - 0.00000000000000000001689 93.0
LYD2_k127_70257_3 Subtilase family - - - 0.000000000000000002902 96.0
LYD2_k127_719730_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 369.0
LYD2_k127_719730_1 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 355.0
LYD2_k127_719730_2 thiolester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000005028 233.0
LYD2_k127_719730_3 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000006221 225.0
LYD2_k127_719730_4 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000002045 201.0
LYD2_k127_719730_5 Glycosyltransferase family 92 - - - 0.00000000000000000001536 103.0
LYD2_k127_719730_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000008206 62.0
LYD2_k127_723594_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 471.0
LYD2_k127_723594_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000002385 203.0
LYD2_k127_723594_2 COGs COG1629 Outer membrane receptor protein mostly Fe transport K02014 - - 0.000000000000000000000172 104.0
LYD2_k127_723594_3 CoA carboxylase activity K01960,K01965,K01968 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.1,6.4.1.3,6.4.1.4 0.000000000003918 78.0
LYD2_k127_739560_0 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 404.0
LYD2_k127_739560_1 beta' subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 349.0
LYD2_k127_739560_2 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 340.0
LYD2_k127_739560_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 336.0
LYD2_k127_739560_4 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003879 256.0
LYD2_k127_739560_5 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000003262 207.0
LYD2_k127_739560_6 NmrA-like family - - - 0.00000000000000000000000000000000000000000001426 183.0
LYD2_k127_739560_7 - - - - 0.00000000008223 73.0
LYD2_k127_739560_8 Lipid A 3-O-deacylase (PagL) - - - 0.0000004212 61.0
LYD2_k127_740927_0 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 379.0
LYD2_k127_740927_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 360.0
LYD2_k127_740927_10 - - - - 0.0000000000002717 79.0
LYD2_k127_740927_11 Histidine kinase - - - 0.0004395 45.0
LYD2_k127_740927_12 hyperosmotic response - - - 0.0007585 46.0
LYD2_k127_740927_2 DNA ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000003291 229.0
LYD2_k127_740927_3 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000004145 220.0
LYD2_k127_740927_4 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.00000000000000000000000000000003561 126.0
LYD2_k127_740927_5 cheY-homologous receiver domain - - - 0.00000000000000000000000000000006214 144.0
LYD2_k127_740927_6 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000007955 133.0
LYD2_k127_740927_7 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000647 130.0
LYD2_k127_740927_8 - - - - 0.00000000000000000005406 102.0
LYD2_k127_740927_9 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000274 98.0
LYD2_k127_791644_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000005315 188.0
LYD2_k127_791644_1 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.0000000000000000000000000000001505 145.0
LYD2_k127_797479_0 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 572.0
LYD2_k127_797479_1 PFAM NAD dependent epimerase dehydratase family K12454 - 5.1.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 352.0
LYD2_k127_797479_2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000004548 234.0
LYD2_k127_819696_0 TonB dependent receptor K02014,K16087 - - 0.00000000000000000000000000000009575 145.0
LYD2_k127_819696_1 Putative DNA-binding domain - - - 0.0000000000000000000000001657 116.0
LYD2_k127_819696_2 Subtilase family - - - 0.0000000846 56.0
LYD2_k127_851330_0 Cadherin repeats. - - - 0.00000000000000000000000000000000000000000000000000000000000001361 242.0
LYD2_k127_851330_1 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000002613 172.0
LYD2_k127_851330_2 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000006725 153.0
LYD2_k127_851330_3 domain, Protein - - - 0.0005076 46.0
LYD2_k127_874019_0 DEAD-like helicases superfamily K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 609.0
LYD2_k127_874019_1 DNA helicase K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 415.0
LYD2_k127_874019_2 4Fe-4S single cluster domain K06937 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007605 369.0
LYD2_k127_874019_3 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005723 307.0
LYD2_k127_874019_4 GTP-binding protein TypA K06207 - - 0.0000000000000000000000000000000000000000000004729 169.0
LYD2_k127_874019_5 Translation initiation factor SUI1 K03113 - - 0.0000000000000008261 92.0
LYD2_k127_886409_0 Belongs to the glycosyl hydrolase 57 family - - - 9.419e-308 969.0
LYD2_k127_886409_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 1.933e-297 926.0
LYD2_k127_886409_2 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000002532 173.0
LYD2_k127_886409_3 PFAM glycosyl transferase, family 35 K00688 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.4.1.1 0.000008289 59.0
LYD2_k127_908219_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 525.0
LYD2_k127_908219_1 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 411.0
LYD2_k127_908219_2 methionine synthase K00544,K00548 - 2.1.1.13,2.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002195 288.0
LYD2_k127_908219_3 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.0000000000000000000000000000000000000000000000000000000000000000003318 243.0
LYD2_k127_908219_4 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.000000000000000000000000000000000000000000000000000000005471 213.0
LYD2_k127_908219_5 - - - - 0.000000002 63.0
LYD2_k127_908219_6 NAD(P)-binding Rossmann-like domain K00303 - 1.5.3.1 0.00002848 47.0
LYD2_k127_921226_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009381 443.0
LYD2_k127_921226_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 309.0
LYD2_k127_921226_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002356 271.0
LYD2_k127_921226_3 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000009746 104.0
LYD2_k127_921226_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.00000000000001024 74.0
LYD2_k127_921226_5 single-stranded nucleic acid binding R3H K06346 - - 0.000000000002115 81.0
LYD2_k127_921226_6 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00001505 57.0
LYD2_k127_9433_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 588.0
LYD2_k127_9433_1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 380.0
LYD2_k127_9433_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00000000000000000000000000000000000000000000173 179.0
LYD2_k127_9433_3 GDP-mannose mannosyl hydrolase activity - - - 0.0000000000000000000000000000000000005784 148.0
LYD2_k127_9433_4 peptidyl-tyrosine sulfation - - - 0.0000000000000373 82.0
LYD2_k127_974887_0 Creatinase/Prolidase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 498.0
LYD2_k127_974887_1 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 334.0
LYD2_k127_974887_2 WD40 domain protein beta Propeller K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 311.0
LYD2_k127_974887_3 Sodium hydrogen exchanger - - - 0.0000000000000000000000000000000000000000009414 164.0
LYD2_k127_977823_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 355.0
LYD2_k127_977823_1 Rieske [2Fe-2S] domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002832 241.0
LYD2_k127_977823_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000001721 237.0
LYD2_k127_977823_3 B3 4 domain - - - 0.000000000000000000000000000000000000000000000002196 193.0
LYD2_k127_977823_4 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.0000000000000000000000000000000000002677 147.0
LYD2_k127_977823_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.0000000000006136 82.0