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Overview

ID MAG02045
Name LYD2_bin.6
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Xanthomonadales
Family Rhodanobacteraceae
Genus Rudaea
Species
Assembly information
Completeness (%) 81.91
Contamination (%) 2.33
GC content (%) 65.0
N50 (bp) 12,232
Genome size (bp) 3,555,471

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3008

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1014293_0 AP endonuclease family 2 C terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 595.0
LYD2_k127_1014293_1 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 415.0
LYD2_k127_1014293_2 Flavin-binding monooxygenase-like - - - 0.000000000000000000000000000000000000000000000000000001787 194.0
LYD2_k127_1014293_3 phosphinothricin N-acetyltransferase activity K09181 - - 0.00000000000000000000000000000000006679 141.0
LYD2_k127_103367_0 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 595.0
LYD2_k127_103367_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 522.0
LYD2_k127_103367_10 - - - - 0.000000000000000000000000000000000001239 143.0
LYD2_k127_103367_11 - - - - 0.00000000000000000000000000000002443 134.0
LYD2_k127_103367_12 Outer membrane efflux protein - - - 0.0000000000000000000000000000004484 123.0
LYD2_k127_103367_14 - - - - 0.000000000000000000633 96.0
LYD2_k127_103367_15 - - - - 0.00000000000000002282 87.0
LYD2_k127_103367_16 translation initiation factor activity K06996 - - 0.00000000000001537 78.0
LYD2_k127_103367_17 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000004199 50.0
LYD2_k127_103367_2 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 349.0
LYD2_k127_103367_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000000000001881 224.0
LYD2_k127_103367_5 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000000000004548 211.0
LYD2_k127_103367_6 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000001301 202.0
LYD2_k127_103367_7 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000009933 189.0
LYD2_k127_103367_8 - - - - 0.000000000000000000000000000000000000000000000001471 177.0
LYD2_k127_103367_9 Uncharacterized conserved protein (DUF2277) - - - 0.0000000000000000000000000000000000001036 149.0
LYD2_k127_108673_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 4.091e-264 827.0
LYD2_k127_108673_1 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 469.0
LYD2_k127_108673_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004044 430.0
LYD2_k127_108673_3 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 408.0
LYD2_k127_108673_4 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.0000000000000000000000000000000000000000000001502 172.0
LYD2_k127_108673_5 phosphocarrier protein HPr K11189 - - 0.00000000000000000000000000000000000002048 146.0
LYD2_k127_1101163_0 aminopeptidase K01262 - 3.4.11.9 4.907e-249 775.0
LYD2_k127_1101163_1 membrane K14205 - 2.3.2.3 1.41e-242 753.0
LYD2_k127_1101163_2 Bacterial virulence protein (VirJ) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 603.0
LYD2_k127_1101163_3 Belongs to the UPF0149 family K09895 - - 0.00000000000000000000000000000000000000000000000000000000000002316 220.0
LYD2_k127_1130184_0 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004298 460.0
LYD2_k127_1130184_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 427.0
LYD2_k127_1130184_2 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 413.0
LYD2_k127_1130184_3 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 375.0
LYD2_k127_1193343_0 Peptidase m28 - - - 1.515e-239 746.0
LYD2_k127_1193343_1 threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 336.0
LYD2_k127_1193343_2 PFAM DoxX K15977 - - 0.0000000000000000000000000000000000000002843 153.0
LYD2_k127_1193343_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000001248 139.0
LYD2_k127_1193343_4 peptide deformylase activity - - - 0.0000000000000000000000000000001193 141.0
LYD2_k127_1193343_5 helix_turn_helix ASNC type K03719 - - 0.000000002753 65.0
LYD2_k127_1256523_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1661.0
LYD2_k127_1256523_1 Outer membrane receptor - - - 0.0 1451.0
LYD2_k127_1256523_10 LacI family K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008837 423.0
LYD2_k127_1256523_11 aminotransferase K14260 - 2.6.1.2,2.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 391.0
LYD2_k127_1256523_12 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 295.0
LYD2_k127_1256523_13 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000004576 235.0
LYD2_k127_1256523_14 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000008285 232.0
LYD2_k127_1256523_15 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000000000000000000000000000000000000000000000000000001827 220.0
LYD2_k127_1256523_16 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000000000000000000000000000000000000000000000000000008206 219.0
LYD2_k127_1256523_17 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.00000000000000000000000000000000000000000000000000000000005238 220.0
LYD2_k127_1256523_18 Protein of unknown function (DUF1203) - - - 0.000000000000000000000000000000000000000000000000000000000505 207.0
LYD2_k127_1256523_19 SH3 domain - - - 0.00000000000000000000000000000000002824 149.0
LYD2_k127_1256523_2 malic enzyme K00029 - 1.1.1.40 4.084e-316 985.0
LYD2_k127_1256523_21 domain, Protein - - - 0.0000001802 63.0
LYD2_k127_1256523_3 Tryptophan halogenase K14266 - 1.14.19.9 4.285e-263 816.0
LYD2_k127_1256523_4 protein conserved in bacteria - - - 1.373e-214 677.0
LYD2_k127_1256523_5 protein conserved in bacteria - - - 1.116e-202 638.0
LYD2_k127_1256523_6 ABC transporter substrate-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 599.0
LYD2_k127_1256523_7 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 477.0
LYD2_k127_1256523_8 Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 473.0
LYD2_k127_1256523_9 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006716 432.0
LYD2_k127_1284647_0 Protein tyrosine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 544.0
LYD2_k127_1284647_1 serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 524.0
LYD2_k127_1284647_10 cytochrome C peroxidase - - - 0.000000000000000000000000000000000005158 145.0
LYD2_k127_1284647_11 cytochrome C peroxidase - - - 0.00000000000000002618 89.0
LYD2_k127_1284647_12 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000001848 71.0
LYD2_k127_1284647_13 domain, Protein K11016 - - 0.0000009633 62.0
LYD2_k127_1284647_14 Parallel beta-helix repeats - - - 0.00009321 55.0
LYD2_k127_1284647_2 serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 486.0
LYD2_k127_1284647_3 PQQ enzyme repeat K05889,K12132 - 1.1.2.6,2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 451.0
LYD2_k127_1284647_4 serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 428.0
LYD2_k127_1284647_5 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000001103 214.0
LYD2_k127_1284647_6 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000128 209.0
LYD2_k127_1284647_7 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000001242 204.0
LYD2_k127_1284647_8 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000001149 204.0
LYD2_k127_1284647_9 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000004089 197.0
LYD2_k127_130304_0 NADPH-dependent glutamate synthase beta - - - 1.05e-316 985.0
LYD2_k127_130304_1 formamidopyrimidine-DNA glycosylase K05522 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 353.0
LYD2_k127_130304_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K18356 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 346.0
LYD2_k127_130304_3 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001145 287.0
LYD2_k127_130304_4 Thioredoxin K03671 - - 0.0000000000000000000000000000000000007274 141.0
LYD2_k127_130304_5 guanyl-nucleotide exchange factor activity K20276,K21449 - - 0.00000000000000000000000000000007719 142.0
LYD2_k127_130304_6 PFAM YCII-related - - - 0.00000000000000000000000000001415 123.0
LYD2_k127_130304_7 serine threonine protein kinase - - - 0.0000000000000002962 82.0
LYD2_k127_1308391_0 3-hydroxyacyl-coa dehydrogenase K07516 - 1.1.1.35 0.0 1273.0
LYD2_k127_1308391_1 peptidase M13 K07386 - - 4.229e-237 752.0
LYD2_k127_1308391_10 Bacteriophage CI repressor helix-turn-helix domain - - - 0.000000000000382 77.0
LYD2_k127_1308391_2 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 2.276e-220 690.0
LYD2_k127_1308391_3 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 9.738e-207 649.0
LYD2_k127_1308391_4 Signal peptidase, peptidase S26 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 317.0
LYD2_k127_1308391_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 291.0
LYD2_k127_1308391_6 type IV pilus biogenesis stability protein PilW K02656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 295.0
LYD2_k127_1308391_7 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000000008784 254.0
LYD2_k127_1308391_8 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000002338 229.0
LYD2_k127_1308391_9 cellulose binding - - - 0.000000000000000002299 101.0
LYD2_k127_1314325_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K04090 - 1.2.7.8 0.0 1923.0
LYD2_k127_1314325_1 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000005324 154.0
LYD2_k127_1314325_2 Hep Hag repeat protein - - - 0.0000000000000000003097 103.0
LYD2_k127_1314325_3 domain, Protein - - - 0.00000000001567 78.0
LYD2_k127_1315723_0 Acetylglutamate kinase K22478 GO:0003674,GO:0003824,GO:0004042,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016597,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.7.2.8 3.362e-219 694.0
LYD2_k127_1315723_1 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 1.49e-213 673.0
LYD2_k127_1315723_2 Acetylornithine deacetylase K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455 538.0
LYD2_k127_1315723_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 504.0
LYD2_k127_1315723_4 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 333.0
LYD2_k127_1315723_5 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000004753 226.0
LYD2_k127_1315737_0 NAD FAD-binding protein K06954 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007324 602.0
LYD2_k127_1315737_1 synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 589.0
LYD2_k127_1315737_10 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 325.0
LYD2_k127_1315737_11 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 330.0
LYD2_k127_1315737_12 Amidinotransferase K01482 - 3.5.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000415 267.0
LYD2_k127_1315737_13 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005218 271.0
LYD2_k127_1315737_14 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007642 272.0
LYD2_k127_1315737_15 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000654 220.0
LYD2_k127_1315737_16 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K03406,K07673,K11617 - 2.7.13.3 0.0000000000000000000000000000000000000000002067 177.0
LYD2_k127_1315737_17 redox protein regulator of disulfide bond formation - - - 0.000000000000000000000000000000000000001495 152.0
LYD2_k127_1315737_18 Protein of unknown function (DUF2878) - - - 0.000000000000000000000000000000000000001741 156.0
LYD2_k127_1315737_19 Belongs to the ompA family K03286 - - 0.0000000000000000605 80.0
LYD2_k127_1315737_2 Domain of unknown function (DUF4331) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 581.0
LYD2_k127_1315737_3 synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 537.0
LYD2_k127_1315737_4 fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 484.0
LYD2_k127_1315737_5 PGAP1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005105 473.0
LYD2_k127_1315737_6 COG3209 Rhs family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 435.0
LYD2_k127_1315737_7 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 421.0
LYD2_k127_1315737_8 HupE / UreJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003355 400.0
LYD2_k127_1315737_9 Protein of unknown function (DUF1365) K09701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 373.0
LYD2_k127_1316048_0 Oxidoreductase - - - 0.0 1005.0
LYD2_k127_1316048_1 PAS fold - - - 3.782e-258 810.0
LYD2_k127_1316048_10 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000005875 215.0
LYD2_k127_1316048_11 Protein of unknown function (DUF692) K09930 - - 0.0000000000000000000000000000000000002723 146.0
LYD2_k127_1316048_12 Predicted integral membrane protein (DUF2282) - - - 0.00000000000000000000000007722 113.0
LYD2_k127_1316048_13 Thi4 family - - - 0.00000000000000000001406 93.0
LYD2_k127_1316048_14 integral membrane protein - - - 0.00000000000000001431 85.0
LYD2_k127_1316048_15 Transmembrane anti-sigma factor - - - 0.0000001454 55.0
LYD2_k127_1316048_2 Glycine cleavage T-protein C-terminal barrel domain - - - 3.566e-241 749.0
LYD2_k127_1316048_3 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009462 507.0
LYD2_k127_1316048_4 hydrolase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 421.0
LYD2_k127_1316048_5 Enoyl-(Acyl carrier protein) reductase K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 385.0
LYD2_k127_1316048_6 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009761 347.0
LYD2_k127_1316048_7 Acetoacetate decarboxylase (ADC) K01574 - 4.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005829 344.0
LYD2_k127_1316048_8 Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 329.0
LYD2_k127_1316048_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003481 276.0
LYD2_k127_1321177_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 4.823e-272 841.0
LYD2_k127_1321177_1 Amidohydrolase family - - - 9.421e-263 825.0
LYD2_k127_1321177_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 5.483e-253 797.0
LYD2_k127_1321177_3 Amidohydrolase family - - - 1.303e-248 782.0
LYD2_k127_1321177_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 5.82e-202 637.0
LYD2_k127_1321177_5 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008545 400.0
LYD2_k127_1321177_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000001764 220.0
LYD2_k127_1321177_7 Cytochrome c - - - 0.00000000000000000000000000000000000000000000002102 178.0
LYD2_k127_1342679_0 receptor - - - 1.869e-291 924.0
LYD2_k127_1342679_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 554.0
LYD2_k127_1342679_2 PFAM Pyrrolo-quinoline quinone K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000007613 244.0
LYD2_k127_1342679_3 transcriptional - - - 0.0000000000000000000000000000001809 128.0
LYD2_k127_1342679_4 helix_turn_helix, arabinose operon control protein - - - 0.0000000000005322 80.0
LYD2_k127_1342679_5 outer membrane autotransporter barrel domain - - - 0.0000003472 63.0
LYD2_k127_1343829_0 Glucose / Sorbosone dehydrogenase - - - 4.415e-237 745.0
LYD2_k127_1343829_1 Belongs to the aldehyde dehydrogenase family K00130,K00151,K10217 GO:0003674,GO:0003824,GO:0004029,GO:0008150,GO:0008152,GO:0008802,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.32,1.2.1.60,1.2.1.8,1.2.1.85 2.218e-214 681.0
LYD2_k127_1343829_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 572.0
LYD2_k127_1343829_3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 461.0
LYD2_k127_1343829_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 377.0
LYD2_k127_1343829_5 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 311.0
LYD2_k127_1343829_6 translation initiation inhibitor, yjgF family K15067 - 3.5.99.5 0.000000000000000000000000000000000000000000000000000000000000006477 233.0
LYD2_k127_1343829_7 - - - - 0.000000000000000000000000000000000000002268 155.0
LYD2_k127_1343829_8 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.00000000000000000000000000005827 119.0
LYD2_k127_1343829_9 - - - - 0.0000000000000000000000001919 111.0
LYD2_k127_1358859_0 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 6.292e-214 672.0
LYD2_k127_1358859_1 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000002822 224.0
LYD2_k127_1358859_2 Belongs to the HSP15 family K04762 - - 0.00000000000000000000000000000000000000000000003426 175.0
LYD2_k127_1358859_3 - - - - 0.0000000000000000000000000000000000000000000006745 171.0
LYD2_k127_1358859_4 Haemolysin-type calcium-binding repeat - - - 0.0000000000000000000000000000000001639 152.0
LYD2_k127_1358859_5 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.000000000000000000000001056 106.0
LYD2_k127_1358859_6 Domain of unknown function (DUF4915) - - - 0.0000000255 57.0
LYD2_k127_1360736_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0 1088.0
LYD2_k127_1360736_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.16e-316 973.0
LYD2_k127_1360736_10 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 337.0
LYD2_k127_1360736_11 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 338.0
LYD2_k127_1360736_12 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 333.0
LYD2_k127_1360736_13 membrane K06194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 303.0
LYD2_k127_1360736_14 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 293.0
LYD2_k127_1360736_15 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001642 287.0
LYD2_k127_1360736_17 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002953 277.0
LYD2_k127_1360736_18 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001909 256.0
LYD2_k127_1360736_19 SMR domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000006355 226.0
LYD2_k127_1360736_2 Glycosyl transferase, family 2 K00721,K07011,K12990,K14597,K16555,K21349 - 2.4.1.268,2.4.1.83 1.779e-252 809.0
LYD2_k127_1360736_20 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000000000000000000000000002487 163.0
LYD2_k127_1360736_21 RNA-binding protein K07574 - - 0.0000000000000000000000000000001593 128.0
LYD2_k127_1360736_22 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.0000000000000000000000003126 108.0
LYD2_k127_1360736_3 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 3.532e-239 743.0
LYD2_k127_1360736_4 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 501.0
LYD2_k127_1360736_5 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 450.0
LYD2_k127_1360736_6 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 431.0
LYD2_k127_1360736_7 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 GO:0003674,GO:0005488,GO:0005515,GO:0042802 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 420.0
LYD2_k127_1360736_8 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 380.0
LYD2_k127_1360736_9 Sigma-70 factor, region 1.2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 361.0
LYD2_k127_136212_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0 1116.0
LYD2_k127_136212_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 458.0
LYD2_k127_136212_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.00000001201 57.0
LYD2_k127_1382807_0 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 394.0
LYD2_k127_1382807_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009391 386.0
LYD2_k127_1382807_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000717 347.0
LYD2_k127_1382807_3 EVE domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002246 237.0
LYD2_k127_1391976_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 612.0
LYD2_k127_1391976_1 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004901 433.0
LYD2_k127_1391976_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 332.0
LYD2_k127_1391976_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003303 310.0
LYD2_k127_1391976_4 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 308.0
LYD2_k127_1391976_5 Sulfate permease and related transporters (MFS superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001292 243.0
LYD2_k127_1392888_0 Outer membrane receptor proteins mostly Fe transport K02014 - - 5.448e-297 926.0
LYD2_k127_1392888_1 Bacterial regulatory protein, Fis family K21405 - - 7.717e-290 902.0
LYD2_k127_1392888_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 2.152e-203 633.0
LYD2_k127_1392888_3 Bacterial periplasmic substrate-binding proteins - - - 1.137e-198 628.0
LYD2_k127_1392888_4 Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione K03396 - 4.4.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 323.0
LYD2_k127_1392888_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001532 267.0
LYD2_k127_1393216_0 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA - - - 0.0 1314.0
LYD2_k127_1393216_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 2.983e-316 985.0
LYD2_k127_1393216_10 Glutaredoxin K07390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009481 433.0
LYD2_k127_1393216_11 Protein of unknown function (DUF3667) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 427.0
LYD2_k127_1393216_12 Tropinone reductase K08081 - 1.1.1.206 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 395.0
LYD2_k127_1393216_13 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 400.0
LYD2_k127_1393216_14 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 377.0
LYD2_k127_1393216_15 Beta-eliminating lyase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 374.0
LYD2_k127_1393216_16 cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 350.0
LYD2_k127_1393216_17 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 327.0
LYD2_k127_1393216_18 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 316.0
LYD2_k127_1393216_19 aminotransferase K14260 - 2.6.1.2,2.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 307.0
LYD2_k127_1393216_2 signal peptide peptidase K04773 - - 1.11e-290 903.0
LYD2_k127_1393216_20 Lysophospholipase L1 and related esterases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001272 263.0
LYD2_k127_1393216_21 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001684 254.0
LYD2_k127_1393216_22 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000005419 244.0
LYD2_k127_1393216_23 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000201 218.0
LYD2_k127_1393216_24 Response regulator receiver K21025 - - 0.000000000000000000000000000000000000000148 164.0
LYD2_k127_1393216_25 Domain of unknown function (DUF4124) - - - 0.00000000000000000000001047 110.0
LYD2_k127_1393216_27 conserved protein, contains double-stranded beta-helix domain K00450,K06720 - 1.13.11.4,4.2.1.108 0.0000000005179 67.0
LYD2_k127_1393216_29 - - - - 0.00001109 55.0
LYD2_k127_1393216_3 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 3.214e-228 713.0
LYD2_k127_1393216_30 General secretion pathway protein K02455 - - 0.0001668 44.0
LYD2_k127_1393216_31 - - - - 0.000224 48.0
LYD2_k127_1393216_4 N-acyl-L-amino acid amidohydrolase K01436 - - 7.178e-203 641.0
LYD2_k127_1393216_5 Multidrug efflux pump K03327 GO:0003674,GO:0005215,GO:0006810,GO:0006855,GO:0008150,GO:0015238,GO:0015893,GO:0022857,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0046677,GO:0050896,GO:0051179,GO:0051234,GO:0055085 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006497 571.0
LYD2_k127_1393216_6 AlkA N-terminal domain K13529 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006254 526.0
LYD2_k127_1393216_7 RNA polymerase sigma factor RpoH K03089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009758 483.0
LYD2_k127_1393216_8 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile K01241 - 3.2.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 488.0
LYD2_k127_1400182_0 Participates in both transcription termination and antitermination K02600 - - 3.552e-272 845.0
LYD2_k127_1400182_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 3.106e-222 698.0
LYD2_k127_1400182_2 NADH ubiquinone oxidoreductase subunit K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 340.0
LYD2_k127_1400182_3 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000001227 240.0
LYD2_k127_1400182_4 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000004997 236.0
LYD2_k127_1400182_5 - - - - 0.00000006238 55.0
LYD2_k127_1407321_0 Serves to protect cells from the toxic effects of hydrogen peroxide K03781 - 1.11.1.6 6.193e-205 646.0
LYD2_k127_1407321_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 428.0
LYD2_k127_1407321_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 395.0
LYD2_k127_1407321_3 Histidine kinase K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 388.0
LYD2_k127_1407321_4 regulator K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 362.0
LYD2_k127_1407321_5 - - - - 0.000000000000000000000000000000000004916 149.0
LYD2_k127_1419279_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 584.0
LYD2_k127_1419279_1 Glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 543.0
LYD2_k127_1419279_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000008012 145.0
LYD2_k127_1420630_0 membrane - - - 2.694e-214 686.0
LYD2_k127_1420630_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019441,GO:0019752,GO:0030429,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.7.1.3 1.343e-205 648.0
LYD2_k127_1420630_2 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 591.0
LYD2_k127_1420630_3 - - - - 0.00000000000000000000003811 113.0
LYD2_k127_1420630_4 - - - - 0.00000000000000005653 87.0
LYD2_k127_143236_0 alpha-glucosidase K01187 - 3.2.1.20 1.503e-294 911.0
LYD2_k127_143236_1 Glycogen debranching enzyme - - - 9.488e-254 805.0
LYD2_k127_1434764_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 6.006e-280 883.0
LYD2_k127_1434764_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 537.0
LYD2_k127_1434764_2 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008614,GO:0008615,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0036094,GO:0042364,GO:0042802,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0050570,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 361.0
LYD2_k127_1434764_3 Drug metabolite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006152 334.0
LYD2_k127_1434764_4 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000779 221.0
LYD2_k127_1434764_5 Zinc metalloprotease (Elastase) K01186,K05994,K21449 - 3.2.1.18,3.4.11.10 0.0000000000000000007234 94.0
LYD2_k127_1434764_6 Right handed beta helix region - - - 0.0000000000000000009392 100.0
LYD2_k127_1449019_0 carbohydrate binding - - - 0.0 3662.0
LYD2_k127_1449019_1 Cardiolipin synthase K06132 - - 7.073e-204 647.0
LYD2_k127_1449019_10 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009311 355.0
LYD2_k127_1449019_11 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 350.0
LYD2_k127_1449019_12 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 328.0
LYD2_k127_1449019_13 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 290.0
LYD2_k127_1449019_14 conserved protein UCP033924 - - - 0.00000000000000000000000000000000000000000000000000000000000000000002166 235.0
LYD2_k127_1449019_15 bacterial OsmY and nodulation domain K04065 - - 0.000000000000000000000000000000000000000000000000000000000000000003126 241.0
LYD2_k127_1449019_16 transporter - - - 0.000000000000000000000000000000000000000000000000000000000000006832 229.0
LYD2_k127_1449019_17 Family of unknown function (DUF5329) - - - 0.0000000000000000000000000000000000000000458 157.0
LYD2_k127_1449019_18 - - - - 0.00000000000000000000000000000000002346 139.0
LYD2_k127_1449019_19 - - - - 0.00000000000000000000000000009766 117.0
LYD2_k127_1449019_2 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 GO:0003674,GO:0003824,GO:0004362,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009055,GO:0009636,GO:0009987,GO:0015036,GO:0015037,GO:0015038,GO:0015949,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0022900,GO:0031974,GO:0033554,GO:0034599,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0055114,GO:0070013,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:0098869,GO:1901360,GO:1990748 1.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 491.0
LYD2_k127_1449019_20 Belongs to the UPF0337 (CsbD) family - - - 0.00000000000000000000000001519 109.0
LYD2_k127_1449019_21 Protein of unknown function (DUF3309) - - - 0.00000000000000000004875 91.0
LYD2_k127_1449019_22 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000001844 87.0
LYD2_k127_1449019_23 Protein of unknown function (DUF3096) - - - 0.0000000000000005216 78.0
LYD2_k127_1449019_24 Protein of unknown function (DUF1328) - - - 0.000000000000009981 78.0
LYD2_k127_1449019_26 UPF0391 membrane protein - - - 0.0000000000002871 70.0
LYD2_k127_1449019_27 SMART Transport-associated and nodulation - - - 0.000000004748 63.0
LYD2_k127_1449019_28 - - - - 0.0007567 47.0
LYD2_k127_1449019_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 505.0
LYD2_k127_1449019_4 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 473.0
LYD2_k127_1449019_5 fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009092 466.0
LYD2_k127_1449019_6 cheY-homologous receiver domain K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 424.0
LYD2_k127_1449019_7 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 421.0
LYD2_k127_1449019_8 GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 399.0
LYD2_k127_1449019_9 SMART cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007598 375.0
LYD2_k127_1450885_0 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 1.36e-298 924.0
LYD2_k127_1450885_1 Nitric oxide reductase large subunit K04561 - 1.7.2.5 8.393e-259 806.0
LYD2_k127_1450885_10 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 335.0
LYD2_k127_1450885_11 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000743 279.0
LYD2_k127_1450885_12 phosphatase homologous to the C-terminal domain of histone macroH2A1 - - - 0.0000000000000000000000000000000000000000000000000000000000005419 229.0
LYD2_k127_1450885_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000000000000000005278 187.0
LYD2_k127_1450885_14 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000000000000000000000000006061 198.0
LYD2_k127_1450885_15 - - - - 0.00000000000000000000000000000000000000000000009995 174.0
LYD2_k127_1450885_16 - - - - 0.000000000000006144 76.0
LYD2_k127_1450885_17 Major facilitator superfamily K03446 - - 0.000000007407 57.0
LYD2_k127_1450885_2 Cytochrome b(N-terminal)/b6/petB - - - 1.67e-257 808.0
LYD2_k127_1450885_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 9.583e-231 722.0
LYD2_k127_1450885_4 Cytochrome C and Quinol oxidase polypeptide I - - - 2.155e-194 621.0
LYD2_k127_1450885_5 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 604.0
LYD2_k127_1450885_6 protein involved in outer membrane biogenesis K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 599.0
LYD2_k127_1450885_7 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 380.0
LYD2_k127_1450885_8 HlyD membrane-fusion protein of T1SS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 352.0
LYD2_k127_1450885_9 PFAM cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000479 330.0
LYD2_k127_1456106_0 COG2366 Protein related to penicillin acylase K01434 - 3.5.1.11 0.0 1061.0
LYD2_k127_1456106_1 transport system involved in gliding motility, auxiliary component - - - 1.995e-284 886.0
LYD2_k127_1456106_2 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002764 502.0
LYD2_k127_1456106_3 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 391.0
LYD2_k127_1456106_4 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 325.0
LYD2_k127_1456106_5 D-alanyl-D-alanine carboxypeptidase K07260 - 3.4.17.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000008096 258.0
LYD2_k127_1456106_6 transporter - - - 0.000000000000000000000000000000000000000000000000000006237 204.0
LYD2_k127_1456106_7 small membrane protein - - - 0.000000000000000000000000000000008552 131.0
LYD2_k127_1456106_8 protein conserved in bacteria - - - 0.0000000000000000005435 88.0
LYD2_k127_1456106_9 - - - - 0.00000003641 59.0
LYD2_k127_1478397_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 1.124e-241 754.0
LYD2_k127_1478397_1 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005068 528.0
LYD2_k127_1478397_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007058 374.0
LYD2_k127_1478397_3 COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K06597 - - 0.0000000000000000000000000000000000000000000000000000000004499 226.0
LYD2_k127_1478397_4 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000001284 198.0
LYD2_k127_1478397_5 chemotaxis signal transduction protein K06598 - - 0.00000000000000000000000000000000000000000000000001129 184.0
LYD2_k127_1483872_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.0 1024.0
LYD2_k127_1483872_1 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 9.504e-305 944.0
LYD2_k127_1483872_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 346.0
LYD2_k127_150933_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0031323,GO:0033238,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0080090 2.7.7.42,2.7.7.89 0.0 1117.0
LYD2_k127_150933_1 Nucleoside-diphosphate-sugar epimerase K07276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 437.0
LYD2_k127_150933_2 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000000000000104 221.0
LYD2_k127_150933_3 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000002229 215.0
LYD2_k127_150933_4 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000001473 203.0
LYD2_k127_1542939_0 General secretion pathway protein K02454 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 1.896e-318 980.0
LYD2_k127_1542939_1 General secretion pathway protein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
LYD2_k127_1542939_2 - - - - 0.00000000000000000000000000000000000000000000000006581 188.0
LYD2_k127_1542939_3 General secretion pathway protein K02456 - - 0.000000000000000000000000000000000000000000003877 168.0
LYD2_k127_1542939_4 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000000002561 147.0
LYD2_k127_1542939_5 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.3.5.3 0.00000000000000000000000000000000000004338 143.0
LYD2_k127_1542939_6 COG4970 Tfp pilus assembly protein FimT K02457 - - 0.00000000000000000001508 93.0
LYD2_k127_155218_0 Flavocytochrome c sulphide dehydrogenase, flavin-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000798 487.0
LYD2_k127_155218_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007037 387.0
LYD2_k127_155218_10 AcrB/AcrD/AcrF family - - - 0.00000000000000000000004577 98.0
LYD2_k127_155218_2 phosphoesterase, PA-phosphatase related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 378.0
LYD2_k127_155218_3 serine threonine protein kinase K08282 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 387.0
LYD2_k127_155218_4 Protein of unknown function (DUF979) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 346.0
LYD2_k127_155218_5 Protein of unknown function (DUF969) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 334.0
LYD2_k127_155218_6 PFAM Sulphur oxidation protein SoxZ K17226 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005766 278.0
LYD2_k127_155218_7 Pyroglutamyl peptidase K01304 - 3.4.19.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000003916 278.0
LYD2_k127_155218_8 DNA-templated transcription, initiation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009104 250.0
LYD2_k127_155218_9 Sigma-70 region 2 - - - 0.00000000000000000000000000000588 128.0
LYD2_k127_1605150_0 Phosphate starvation protein PhoH K07175 - - 5.023e-257 797.0
LYD2_k127_1605150_1 Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state - - - 3.154e-225 711.0
LYD2_k127_1605150_3 Catalyzes the formation of 2-oxoglutarate from isocitrate K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 564.0
LYD2_k127_1605150_4 Two component response regulator for the phosphate regulon K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007379 415.0
LYD2_k127_1605150_5 long-chain fatty acid transporting porin activity K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008046 270.0
LYD2_k127_1605150_6 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000009423 237.0
LYD2_k127_1605150_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000381 219.0
LYD2_k127_1605150_8 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.000000000000000000009217 99.0
LYD2_k127_1605150_9 Histidine kinase K07636 - 2.7.13.3 0.0000000000000005769 79.0
LYD2_k127_161361_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 557.0
LYD2_k127_161361_1 CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000438 267.0
LYD2_k127_161361_2 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003065 253.0
LYD2_k127_161361_3 Serine threonine protein kinase K08282,K11916,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000006534 224.0
LYD2_k127_163754_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1389.0
LYD2_k127_163754_1 Belongs to the GPI family K01810 - 5.3.1.9 1.254e-263 821.0
LYD2_k127_163754_10 protein conserved in bacteria K09920 - - 0.000000000000000000000000000000000000000000000000000000000000000001583 230.0
LYD2_k127_163754_11 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000001666 203.0
LYD2_k127_163754_12 Pkd domain containing protein K12567 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000002605 220.0
LYD2_k127_163754_13 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000000000000000000006253 194.0
LYD2_k127_163754_14 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000000000000000000000000008623 190.0
LYD2_k127_163754_15 - - - - 0.00000000000000002034 85.0
LYD2_k127_163754_2 MTH538 TIR-like domain (DUF1863) K12132 - 2.7.11.1 6.042e-205 660.0
LYD2_k127_163754_3 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease K03694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 613.0
LYD2_k127_163754_4 DNA mediated transformation - - - 1.932e-194 625.0
LYD2_k127_163754_5 DNA mediated transformation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004627 598.0
LYD2_k127_163754_6 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0002097,GO:0002098,GO:0002143,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004534 587.0
LYD2_k127_163754_7 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006075 443.0
LYD2_k127_163754_8 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003521 247.0
LYD2_k127_163754_9 High frequency lysogenization protein HflD homolog K07153 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003476 244.0
LYD2_k127_1660197_0 ATPase family associated with various cellular activities (AAA) - - - 9.556e-198 628.0
LYD2_k127_1660197_1 hydrolase of the alpha beta-hydrolase fold K07019 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 473.0
LYD2_k127_1660197_10 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000001136 130.0
LYD2_k127_1660197_2 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 447.0
LYD2_k127_1660197_3 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 433.0
LYD2_k127_1660197_4 Aspartyl/Asparaginyl beta-hydroxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 438.0
LYD2_k127_1660197_5 acetyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 377.0
LYD2_k127_1660197_6 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007189 376.0
LYD2_k127_1660197_7 porphyrin biosynthesis protein K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 386.0
LYD2_k127_1660197_8 HemX, putative uroporphyrinogen-III C-methyltransferase K02496 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000486 276.0
LYD2_k127_1660197_9 protein possibly involved in aromatic compounds catabolism - - - 0.00000000000000000000000000000000000000000000000000000008247 200.0
LYD2_k127_1663098_0 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 625.0
LYD2_k127_1663098_1 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 507.0
LYD2_k127_1663098_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000001848 267.0
LYD2_k127_1663098_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001195 251.0
LYD2_k127_1663098_4 Trm112p-like protein - - - 0.000000000000000000000000000000001466 134.0
LYD2_k127_166837_0 COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 3.798e-195 626.0
LYD2_k127_166837_1 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 540.0
LYD2_k127_166837_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006775 422.0
LYD2_k127_166837_3 carbohydrate metabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000236 289.0
LYD2_k127_166837_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001666 234.0
LYD2_k127_1727483_0 Sodium/hydrogen exchanger family K03455 - - 5.587e-255 797.0
LYD2_k127_1727483_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 608.0
LYD2_k127_1727483_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005853 575.0
LYD2_k127_1727483_3 - - - - 0.000000000000000000000000000000000000000000000000000002213 201.0
LYD2_k127_1727483_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000002242 186.0
LYD2_k127_1727483_5 belongs to the aspartokinase family K12524 GO:0003674,GO:0003824,GO:0004072,GO:0004412,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.3,2.7.2.4 0.0000000000000000000000000000000000000000000000006663 189.0
LYD2_k127_1808284_0 ABC-type glycine betaine transport system K05845 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 317.0
LYD2_k127_1808284_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 299.0
LYD2_k127_1808284_2 SMART ATPase, AAA type, core K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 286.0
LYD2_k127_1808284_3 glycine betaine transport K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000001047 222.0
LYD2_k127_1808284_4 Protein of unknown function (DUF3011) - - - 0.000000000000000000000000000000000000000000001148 174.0
LYD2_k127_1808284_5 DinB superfamily - - - 0.000000000000000000000000000000000000000001175 162.0
LYD2_k127_1829630_0 carboxylase K01968 - 6.4.1.4 0.0 1062.0
LYD2_k127_1829630_1 ABC-type multidrug transport system ATPase and permease K18893 - - 5.502e-290 899.0
LYD2_k127_1829630_2 enoyl-CoA hydratase K13766 - 4.2.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 351.0
LYD2_k127_1829630_3 PFAM Cupin 2 conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001628 236.0
LYD2_k127_1829630_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000005006 195.0
LYD2_k127_1860383_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 1.198e-210 662.0
LYD2_k127_1860383_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0052693,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004202 597.0
LYD2_k127_1860383_10 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000003107 136.0
LYD2_k127_1860383_11 Gram-negative-bacterium-type cell outer membrane assembly - - - 0.0000000000000000000000000000009415 136.0
LYD2_k127_1860383_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006008 403.0
LYD2_k127_1860383_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 389.0
LYD2_k127_1860383_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 338.0
LYD2_k127_1860383_5 Glycine cleavage system regulatory protein K03567 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 298.0
LYD2_k127_1860383_6 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000004425 231.0
LYD2_k127_1860383_7 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000000000000004843 226.0
LYD2_k127_1860383_8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000000000001102 194.0
LYD2_k127_1860383_9 Peroxiredoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000001408 190.0
LYD2_k127_1905568_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0 1097.0
LYD2_k127_1905568_1 - - - - 0.0000000000000000000000002098 114.0
LYD2_k127_1926892_0 membrane - - - 0.0 1215.0
LYD2_k127_1926892_1 Involved in the processing of the 5'end of 16S rRNA K08301 - - 9.499e-243 757.0
LYD2_k127_1926892_2 Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase K03568 - - 1.438e-219 686.0
LYD2_k127_1926892_3 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002671 268.0
LYD2_k127_1930430_0 due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1458.0
LYD2_k127_1930430_1 Protein tyrosine kinase - - - 4.817e-321 1034.0
LYD2_k127_1930430_10 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000000000000000000000000000000000000002785 185.0
LYD2_k127_1930430_11 domain, Protein - - - 0.00000000000000000000000000003675 133.0
LYD2_k127_1930430_12 pathogenesis - - - 0.00000000000000000000009495 113.0
LYD2_k127_1930430_13 pathogenesis - - - 0.0000000000000000000001398 112.0
LYD2_k127_1930430_14 - - - - 0.00000000000000001902 87.0
LYD2_k127_1930430_2 Amidohydrolase family - - - 1.431e-211 666.0
LYD2_k127_1930430_3 dna polymerase III delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 430.0
LYD2_k127_1930430_4 Thioredoxin K05838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 392.0
LYD2_k127_1930430_5 Oxygenase, catalysing oxidative methylation of damaged DNA K09990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 372.0
LYD2_k127_1930430_6 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 378.0
LYD2_k127_1930430_7 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 287.0
LYD2_k127_1930430_8 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000000000000000000007271 198.0
LYD2_k127_1930430_9 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000002389 196.0
LYD2_k127_1931608_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18303 - - 0.0 1716.0
LYD2_k127_1931608_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.0 1149.0
LYD2_k127_1931608_10 Protein of unknown function (DUF3016) - - - 0.00000000000000000000000000000000000000000000000002563 185.0
LYD2_k127_1931608_11 Protein of unknown function (DUF3016) - - - 0.000000000000000000000000000000000000000000000004029 178.0
LYD2_k127_1931608_12 Domain of unknown function (DUF4260) - - - 0.000000000000000000000000000000000000000000000006615 178.0
LYD2_k127_1931608_2 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 4.663e-199 629.0
LYD2_k127_1931608_3 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 569.0
LYD2_k127_1931608_4 Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (lauroyl)-lipid IV(A) K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 468.0
LYD2_k127_1931608_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18302 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 468.0
LYD2_k127_1931608_6 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 363.0
LYD2_k127_1931608_7 Sulfotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 309.0
LYD2_k127_1931608_8 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006274 302.0
LYD2_k127_1931608_9 Transcriptional regulator K18301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 294.0
LYD2_k127_1940250_0 Serine carboxypeptidase - - - 2.748e-244 769.0
LYD2_k127_1940250_1 KaiC K08482 - - 4.591e-242 774.0
LYD2_k127_1940250_10 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 390.0
LYD2_k127_1940250_11 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 355.0
LYD2_k127_1940250_12 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 325.0
LYD2_k127_1940250_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 321.0
LYD2_k127_1940250_14 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 315.0
LYD2_k127_1940250_15 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 305.0
LYD2_k127_1940250_16 protein conserved in bacteria K09921 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 297.0
LYD2_k127_1940250_17 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004145 262.0
LYD2_k127_1940250_18 Domain of unknown function (DUF4337) - - - 0.00000000000000000000000000000000000000000000000000000000000001461 220.0
LYD2_k127_1940250_19 Protein of unknown function (DUF971) - - - 0.0000000000000000000000000000000000000000000000000007398 194.0
LYD2_k127_1940250_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 6.424e-235 732.0
LYD2_k127_1940250_20 - - - - 0.000000000000000000000000000000000000000000000007582 179.0
LYD2_k127_1940250_21 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000002485 165.0
LYD2_k127_1940250_3 aminopeptidase - - - 8.591e-196 628.0
LYD2_k127_1940250_4 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 574.0
LYD2_k127_1940250_5 VWA domain containing CoxE-like protein K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 490.0
LYD2_k127_1940250_6 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 480.0
LYD2_k127_1940250_7 COG0714 MoxR-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 458.0
LYD2_k127_1940250_8 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 452.0
LYD2_k127_1940250_9 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 414.0
LYD2_k127_1987581_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 4.148e-220 695.0
LYD2_k127_1987581_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 610.0
LYD2_k127_1987581_2 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 515.0
LYD2_k127_1987581_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 327.0
LYD2_k127_1987581_4 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000000000000000000000000000000000009707 151.0
LYD2_k127_1987581_5 - - - - 0.000000000000002064 83.0
LYD2_k127_1991270_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 2.135e-280 875.0
LYD2_k127_1991270_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 586.0
LYD2_k127_1991270_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007305 315.0
LYD2_k127_1991270_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000000000000000004303 244.0
LYD2_k127_1991270_4 Acyl-CoA thioesterase K07107 - - 0.000000000000000000000000000000000000000000002984 170.0
LYD2_k127_1991270_5 Alpha/beta hydrolase family - - - 0.0000000000000000001851 88.0
LYD2_k127_2000934_0 amino acid peptide transporter K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004733 421.0
LYD2_k127_2000934_1 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002193 376.0
LYD2_k127_2000934_2 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 334.0
LYD2_k127_2000934_3 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004264 254.0
LYD2_k127_2000934_4 ECF sigma factor - - - 0.0000000000000000000000000000000000000002976 159.0
LYD2_k127_2000934_5 - - - - 0.000000000000000000000000000000000000003371 152.0
LYD2_k127_2002337_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0 1352.0
LYD2_k127_2002337_1 Na -driven multidrug efflux pump - - - 7.228e-231 724.0
LYD2_k127_2002337_10 phosphinothricin N-acetyltransferase activity K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000007509 192.0
LYD2_k127_2002337_11 - - - - 0.0000000000000000000000000000000000000000000000001068 183.0
LYD2_k127_2002337_12 ACT domain K09964 - - 0.000000000000000000000000000000000000000000001555 173.0
LYD2_k127_2002337_13 - - - - 0.000000000000000000000000001019 119.0
LYD2_k127_2002337_14 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000007207 102.0
LYD2_k127_2002337_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 467.0
LYD2_k127_2002337_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 446.0
LYD2_k127_2002337_4 acetylesterase activity K08680 - 4.2.99.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 420.0
LYD2_k127_2002337_5 ThiJ/PfpI family-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 394.0
LYD2_k127_2002337_6 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 381.0
LYD2_k127_2002337_7 6-phosphogluconolactonase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006276 311.0
LYD2_k127_2002337_8 Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000000000000003554 196.0
LYD2_k127_2002337_9 PFAM glutathione-dependent formaldehyde-activating GFA - - - 0.0000000000000000000000000000000000000000000000000000003825 195.0
LYD2_k127_2003126_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1474.0
LYD2_k127_2003126_1 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 3.794e-257 815.0
LYD2_k127_2003126_10 Belongs to the CDS family - - - 0.00000000000000000000000000000000000000000000000000000000000004359 218.0
LYD2_k127_2003126_11 TIGRFAM Thioredoxin K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000002575 208.0
LYD2_k127_2003126_12 Ion channel - - - 0.0000000000000000000000000000000000000000000000000000242 194.0
LYD2_k127_2003126_13 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000000000000000000000000000003762 166.0
LYD2_k127_2003126_14 transport system, auxiliary component K18480 - - 0.00000000000000000000000001868 117.0
LYD2_k127_2003126_15 Protein of unknown function (DUF2892) - - - 0.0000000000000000000000001719 108.0
LYD2_k127_2003126_16 SCO1/SenC K07152 - - 0.000000001211 60.0
LYD2_k127_2003126_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins - - - 1.224e-195 627.0
LYD2_k127_2003126_3 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 540.0
LYD2_k127_2003126_4 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 408.0
LYD2_k127_2003126_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006218 387.0
LYD2_k127_2003126_6 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 372.0
LYD2_k127_2003126_7 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005743 334.0
LYD2_k127_2003126_8 ABC transporter substrate-binding protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002373 284.0
LYD2_k127_2003126_9 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001 245.0
LYD2_k127_2005542_0 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004171 431.0
LYD2_k127_2005542_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000000000000006484 242.0
LYD2_k127_2005542_2 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000000000009584 213.0
LYD2_k127_2005542_3 AsmA family K07289,K07290 - - 0.000000000000000000000000000000001043 152.0
LYD2_k127_2005542_4 phosphorelay signal transduction system K14987 - - 0.00000000000000000000000000002089 124.0
LYD2_k127_2005542_5 Belongs to the ompA family K03286 - - 0.0000000000000000605 80.0
LYD2_k127_2005542_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000421 70.0
LYD2_k127_2005542_7 PFAM AsmA family protein K07289,K07290 - - 0.000000005993 70.0
LYD2_k127_2020369_0 OmpA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 525.0
LYD2_k127_2020369_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001158 252.0
LYD2_k127_2020369_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000007602 253.0
LYD2_k127_2020369_3 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000001193 234.0
LYD2_k127_2020369_4 - - - - 0.0000000000000000000000000000000000000000000000000000000001099 216.0
LYD2_k127_2020369_5 Ras of Complex, Roc, domain of DAPkinase - - - 0.0000000000000000000000000000000000000000000000000000004025 198.0
LYD2_k127_2020369_6 Flavodoxin-like fold K00355 - 1.6.5.2 0.0000000000000000000000000000000000000000000000002784 177.0
LYD2_k127_2020369_7 STAS domain - - - 0.0000000000000000918 85.0
LYD2_k127_2020369_8 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like - - - 0.0000000007374 69.0
LYD2_k127_2062605_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1105.0
LYD2_k127_2062605_1 Catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 582.0
LYD2_k127_2062605_10 - - - - 0.000000000000000000000000000000304 126.0
LYD2_k127_2062605_11 PFAM regulatory protein, ArsR - - - 0.000000000000000000000002641 110.0
LYD2_k127_2062605_12 response regulator K02488 - 2.7.7.65 0.000000000000000005348 97.0
LYD2_k127_2062605_13 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000000000296 78.0
LYD2_k127_2062605_14 Protein of unknown function (DUF3247) - - - 0.000000000005922 72.0
LYD2_k127_2062605_2 KR domain K00059,K00076 - 1.1.1.100,1.1.1.159 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 443.0
LYD2_k127_2062605_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 302.0
LYD2_k127_2062605_4 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000001553 257.0
LYD2_k127_2062605_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000003389 226.0
LYD2_k127_2062605_6 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.000000000000000000000000000000000000000000000000000000000000102 215.0
LYD2_k127_2062605_7 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000001111 211.0
LYD2_k127_2062605_8 T5orf172 - - - 0.0000000000000000000000000000000000000000000000009742 181.0
LYD2_k127_2062605_9 Domain of unknown function (DUF4142) K08995 - - 0.0000000000000000000000000000000000000000000017 172.0
LYD2_k127_2074194_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate - - - 0.0 1146.0
LYD2_k127_2074194_1 Potassium transporter TrkA - - - 0.0 1018.0
LYD2_k127_2074194_10 Cold-shock protein K03704 - - 0.0000000000000000000000000000000007956 130.0
LYD2_k127_2074194_11 AAA domain (dynein-related subfamily) - - - 0.00000000000000000003542 91.0
LYD2_k127_2074194_12 Thiamine biosynthesis protein K03154 - - 0.00000000000000000006234 90.0
LYD2_k127_2074194_2 Fructose-bisphosphate aldolase class-II - - - 8.12e-203 635.0
LYD2_k127_2074194_3 Belongs to the FBPase class 1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009295 604.0
LYD2_k127_2074194_4 Phosphoribulokinase / Uridine kinase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 552.0
LYD2_k127_2074194_5 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041 457.0
LYD2_k127_2074194_6 Haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 342.0
LYD2_k127_2074194_7 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009555 338.0
LYD2_k127_2074194_8 cytochrome K17230 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 306.0
LYD2_k127_2074194_9 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000005996 227.0
LYD2_k127_2075937_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.0 1016.0
LYD2_k127_2075937_1 Molybdopterin oxidoreductase Fe4S4 domain - - - 2.93e-321 995.0
LYD2_k127_2075937_2 Zinc carboxypeptidase - - - 8.651e-260 811.0
LYD2_k127_2075937_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008478 516.0
LYD2_k127_2075937_4 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005819 492.0
LYD2_k127_2075937_5 Branched-chain amino acid aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 336.0
LYD2_k127_2075937_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005024 270.0
LYD2_k127_2075937_7 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000483 222.0
LYD2_k127_2075937_8 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000004069 199.0
LYD2_k127_2075937_9 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000008332 119.0
LYD2_k127_2076210_0 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 - 2.1.1.13 0.0 1580.0
LYD2_k127_2076210_1 CO dehydrogenase flavoprotein C-terminal domain - - - 1.981e-209 664.0
LYD2_k127_2076210_2 Methyltransferase K00548 - 2.1.1.13 1.552e-204 640.0
LYD2_k127_2076210_3 Adenosine/AMP deaminase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 511.0
LYD2_k127_2076210_4 ArsR family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 493.0
LYD2_k127_2076210_5 HIUase/Transthyretin family K07127 - 3.5.2.17 0.0000000000000000000000000000000000000000000003778 170.0
LYD2_k127_2076210_6 membrane - - - 0.000000000000000000000000000000000005278 143.0
LYD2_k127_2076210_7 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000003046 97.0
LYD2_k127_2100861_0 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005454 563.0
LYD2_k127_2100861_1 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 423.0
LYD2_k127_2100861_10 Ppx GppA phosphatase - - - 0.000000000000000000000000000000000000000188 157.0
LYD2_k127_2100861_11 MacB-like periplasmic core domain - - - 0.0000000000000000000000000498 112.0
LYD2_k127_2100861_12 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000002558 119.0
LYD2_k127_2100861_13 extracellular matrix structural constituent - - - 0.000001719 57.0
LYD2_k127_2100861_2 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 419.0
LYD2_k127_2100861_3 COGs COG5616 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 397.0
LYD2_k127_2100861_4 TIR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 338.0
LYD2_k127_2100861_5 NAD(P)H-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 322.0
LYD2_k127_2100861_6 Phage lysozyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 335.0
LYD2_k127_2100861_7 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 300.0
LYD2_k127_2100861_8 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003739 248.0
LYD2_k127_2100861_9 LRR receptor-like serine threonine-protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000003667 240.0
LYD2_k127_2113578_0 AMP-binding enzyme C-terminal domain K00666,K20034 - 6.2.1.44 8.74e-273 848.0
LYD2_k127_2113578_1 COG2939 Carboxypeptidase C (cathepsin A) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 609.0
LYD2_k127_2113578_2 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 575.0
LYD2_k127_2113578_3 Nuclear transport factor 2 (NTF2) domain - - - 0.00000001204 63.0
LYD2_k127_211919_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008803 516.0
LYD2_k127_211919_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000258 427.0
LYD2_k127_211919_2 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 364.0
LYD2_k127_211919_3 fumarylacetoacetate hydrolase K16165 - 3.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 289.0
LYD2_k127_211919_4 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000007671 234.0
LYD2_k127_211919_5 - - - - 0.000000000000000000000000000000000000000000009984 167.0
LYD2_k127_211919_6 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.00000000000000000000000000000000000000004179 156.0
LYD2_k127_211919_7 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03214 - - 0.00000000241 59.0
LYD2_k127_211919_8 Zinc metalloprotease (Elastase) K01186,K05994,K21449 - 3.2.1.18,3.4.11.10 0.00000003987 63.0
LYD2_k127_2125922_0 Histidine kinase - - - 0.0 1276.0
LYD2_k127_2125922_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1183.0
LYD2_k127_2125922_10 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000000000000000000000000000000000000002793 190.0
LYD2_k127_2125922_11 Belongs to the P-Pant transferase superfamily K06133 - - 0.00000000000000000000000000000000000000000000000683 198.0
LYD2_k127_2125922_12 Biopolymer K03559 - - 0.00000000000000000000000000000000000000000003436 164.0
LYD2_k127_2125922_14 - - - - 0.0000000000000008552 91.0
LYD2_k127_2125922_15 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000002057 72.0
LYD2_k127_2125922_2 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006681 469.0
LYD2_k127_2125922_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 376.0
LYD2_k127_2125922_4 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 381.0
LYD2_k127_2125922_5 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 359.0
LYD2_k127_2125922_6 Biopolymer transporter ExbB K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005203 348.0
LYD2_k127_2125922_7 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 340.0
LYD2_k127_2125922_8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 302.0
LYD2_k127_2125922_9 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000003876 222.0
LYD2_k127_2146687_0 Protein of unknown function (DUF3604) - - - 1.841e-246 781.0
LYD2_k127_2146687_1 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004908 283.0
LYD2_k127_2146687_2 COG1226 Kef-type K transport systems - - - 0.000000000000001933 85.0
LYD2_k127_2146687_3 Outer membrane efflux protein - - - 0.000005509 50.0
LYD2_k127_2147044_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 6.365e-212 678.0
LYD2_k127_2147044_1 HNH nucleases - - - 0.0000000000000000000000000000000000000000000000000000000004924 205.0
LYD2_k127_2147044_2 Polymorphic membrane protein Chlamydia - - - 0.0000000000000000000000000000000000000000000000001451 199.0
LYD2_k127_2147044_3 Domain of unknown function (DUF4347) - - - 0.00000000000000000000000000000000000000000000005015 186.0
LYD2_k127_2147044_4 gag-polyprotein putative aspartyl protease - - - 0.000000003643 66.0
LYD2_k127_2173439_0 Hemolysins and related proteins containing CBS domains K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008244 609.0
LYD2_k127_2173439_1 phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005718 549.0
LYD2_k127_2173439_2 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 503.0
LYD2_k127_2173439_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 476.0
LYD2_k127_2173439_4 phosphate transport system permease K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 426.0
LYD2_k127_2173439_5 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 419.0
LYD2_k127_2173439_6 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007127 347.0
LYD2_k127_2173439_7 Pit accessory protein K07220 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 330.0
LYD2_k127_2173439_8 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 332.0
LYD2_k127_2173439_9 Belongs to the inositol monophosphatase superfamily K01092 - 3.1.3.25 0.00000000000000000000000000000000001372 139.0
LYD2_k127_21848_0 2,4-dienoyl-coa reductase K00219 - 1.3.1.34 0.0 1122.0
LYD2_k127_21848_1 chorismate lyase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000004237 243.0
LYD2_k127_21848_10 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000982 104.0
LYD2_k127_21848_11 - - - - 0.0000000000000000000002871 105.0
LYD2_k127_21848_12 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000001118 107.0
LYD2_k127_21848_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000007024 91.0
LYD2_k127_21848_14 - - - - 0.0000000000000000001653 103.0
LYD2_k127_21848_15 helix_turn_helix, arabinose operon control protein - - - 0.00000000001941 74.0
LYD2_k127_21848_16 Belongs to the peptidase S8 family K01337,K01387,K05994,K08604,K14645,K20276 - 3.4.11.10,3.4.21.50,3.4.24.25,3.4.24.3 0.000000699 62.0
LYD2_k127_21848_2 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002393 237.0
LYD2_k127_21848_3 receptor - - - 0.000000000000000000000000000000000000000000000000000000002176 205.0
LYD2_k127_21848_4 Transporter Component K07112 - - 0.0000000000000000000000000000000000000000001991 169.0
LYD2_k127_21848_5 - - - - 0.000000000000000000000000000000000000000004092 158.0
LYD2_k127_21848_6 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000001486 146.0
LYD2_k127_21848_7 Sulphur transport K07112 - - 0.000000000000000000000000000000000003699 143.0
LYD2_k127_21848_8 redox protein, regulator of disulfide bond formation - - - 0.000000000000000000000000000000002429 136.0
LYD2_k127_21848_9 Transcriptional regulator K07506 - - 0.000000000000000000000000000008939 132.0
LYD2_k127_2204757_0 DNA internalization-related competence protein ComEC Rec2 K02238 - - 2.703e-224 700.0
LYD2_k127_2204757_1 Protein of unknown function (DUF1298) - - - 1.551e-222 707.0
LYD2_k127_2204757_10 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000006474 122.0
LYD2_k127_2204757_2 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702 - 1.839e-214 681.0
LYD2_k127_2204757_3 aminotransferase K14287 - 2.6.1.88 7.101e-212 665.0
LYD2_k127_2204757_4 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 542.0
LYD2_k127_2204757_5 carbon-nitrogen hydrolase K13566 - 3.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 394.0
LYD2_k127_2204757_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 379.0
LYD2_k127_2204757_7 Biopolymer K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397 337.0
LYD2_k127_2204757_8 Biopolymer K03559 - - 0.000000000000000000000000000000000000000000000000000000000000003364 220.0
LYD2_k127_2204757_9 Protein of unknown function, DUF255 - - - 0.0000000000000000000000000000000000005426 146.0
LYD2_k127_2239463_0 Glutamate decarboxylase and related PLP-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 600.0
LYD2_k127_2239463_1 Thermolysin metallopeptidase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 461.0
LYD2_k127_2239463_2 cysteine synthase K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 356.0
LYD2_k127_2239463_3 - - - - 0.0000000000000001299 83.0
LYD2_k127_2248178_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 9.707e-220 699.0
LYD2_k127_2248178_1 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 572.0
LYD2_k127_2248178_2 Methylates ribosomal protein L11 K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 438.0
LYD2_k127_2248178_3 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 349.0
LYD2_k127_2248178_4 Protein of unknown function (DUF3426) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005435 263.0
LYD2_k127_2248178_5 Bacterial regulatory protein, Fis family K03557 - - 0.000000000000000000000000000003703 124.0
LYD2_k127_225932_0 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000537 507.0
LYD2_k127_225932_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000604 363.0
LYD2_k127_225932_2 PFAM alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000006013 230.0
LYD2_k127_225932_3 amine dehydrogenase activity - - - 0.000000000000000000000000000001734 141.0
LYD2_k127_225932_4 Multicopper oxidase K06324 - 1.16.3.3 0.0000000000000001124 81.0
LYD2_k127_2262648_0 Belongs to the peptidase S14 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007167 473.0
LYD2_k127_2262648_1 - - - - 0.000000000000000000000000000000000001513 160.0
LYD2_k127_2262648_2 Phage lysozyme K01185 - 3.2.1.17 0.00000000000000000000000000000002948 131.0
LYD2_k127_2262648_3 - - - - 0.000000000000000000006255 102.0
LYD2_k127_2262648_5 Tail sheath protein K06907 - - 0.000001807 58.0
LYD2_k127_2262648_7 Uncharacterized conserved protein (DUF2190) - - - 0.000006032 54.0
LYD2_k127_2297131_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.044e-290 907.0
LYD2_k127_2297131_1 peptidase dimerisation domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 473.0
LYD2_k127_2337033_0 - - - - 6.35e-255 799.0
LYD2_k127_2337033_1 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 598.0
LYD2_k127_2337033_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 372.0
LYD2_k127_2337033_3 Transport permease protein K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 297.0
LYD2_k127_2337033_4 Glycosyl transferase K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002385 292.0
LYD2_k127_2337033_5 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000001569 154.0
LYD2_k127_2359035_0 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 481.0
LYD2_k127_2359035_1 Transcriptional regulator K10914 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0030551,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032561,GO:0035438,GO:0036094,GO:0043167,GO:0043168,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 359.0
LYD2_k127_2359035_2 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000001201 146.0
LYD2_k127_2378346_0 Outer membrane receptor - - - 4.619e-310 978.0
LYD2_k127_2378346_1 Lytic murein transglycosylase K08309 - - 1.102e-251 796.0
LYD2_k127_2378346_10 glutamate--cysteine ligase K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000001229 175.0
LYD2_k127_2378346_11 Group 1 truncated hemoglobin K06886 - - 0.000000000000000000000000003538 119.0
LYD2_k127_2378346_12 receptor K02014 - - 0.00000000267 57.0
LYD2_k127_2378346_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 4.938e-197 625.0
LYD2_k127_2378346_3 Sulfotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 613.0
LYD2_k127_2378346_4 Metal-dependent hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 360.0
LYD2_k127_2378346_5 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 295.0
LYD2_k127_2378346_6 cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002089 279.0
LYD2_k127_2378346_7 Thiol disulfide interchange protein K03673 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000048 276.0
LYD2_k127_2378346_8 Thiol disulfide interchange protein K03673 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003386 269.0
LYD2_k127_2378346_9 Fibronectin type 3 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001027 256.0
LYD2_k127_2386331_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 GO:0003674,GO:0003824,GO:0004611,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008964,GO:0016829,GO:0016830,GO:0016831,GO:0044424,GO:0044444,GO:0044464 4.1.1.31 0.0 1296.0
LYD2_k127_2386331_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 2.291e-288 889.0
LYD2_k127_2386331_10 Putative ATP-dependant zinc protease - - - 0.000000000000000000000000000000000000000000000000249 181.0
LYD2_k127_2386331_11 Penicillinase repressor - - - 0.000000000000000000000000000000000000000000000000944 179.0
LYD2_k127_2386331_12 - - - - 0.0000000000000000000000002938 114.0
LYD2_k127_2386331_13 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000006092 115.0
LYD2_k127_2386331_2 nuclear chromosome segregation - - - 1.114e-217 691.0
LYD2_k127_2386331_3 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 603.0
LYD2_k127_2386331_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 542.0
LYD2_k127_2386331_5 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 478.0
LYD2_k127_2386331_6 Belongs to the RimK family K05844 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 471.0
LYD2_k127_2386331_7 XRE family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 436.0
LYD2_k127_2386331_8 BlaR1 peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 428.0
LYD2_k127_2386331_9 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 423.0
LYD2_k127_2388979_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009887 611.0
LYD2_k127_2388979_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007257 606.0
LYD2_k127_2388979_10 - - - - 0.00000000000000000000000001282 110.0
LYD2_k127_2388979_11 epsilon subunit K02114 - - 0.000000000000000000000001012 119.0
LYD2_k127_2388979_12 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000000000000000000008442 101.0
LYD2_k127_2388979_13 Protein of unknown function (DUF3309) - - - 0.000000000000000002472 85.0
LYD2_k127_2388979_14 UPF0391 membrane protein - - - 0.000001691 51.0
LYD2_k127_2388979_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000845 411.0
LYD2_k127_2388979_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 295.0
LYD2_k127_2388979_4 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007586 273.0
LYD2_k127_2388979_5 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009475 249.0
LYD2_k127_2388979_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000000000004173 178.0
LYD2_k127_2388979_7 SH3 domain - - - 0.000000000000000000000000000000000008589 150.0
LYD2_k127_2388979_8 ATP synthase K02115 - - 0.00000000000000000000000000000000002947 145.0
LYD2_k127_2388979_9 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000109 127.0
LYD2_k127_2404090_0 Protein of unknown function (DUF3604) - - - 0.0 1031.0
LYD2_k127_2404090_1 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000001018 253.0
LYD2_k127_2404090_2 CHAD domain - - - 0.0000000000000000000000000000000000319 147.0
LYD2_k127_2404090_3 HupE / UreJ protein - - - 0.0000000000000000000004093 109.0
LYD2_k127_2404090_4 Protein of unknown function (DUF3313) - - - 0.000000001998 61.0
LYD2_k127_2443096_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 607.0
LYD2_k127_2443096_1 Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 439.0
LYD2_k127_2443096_2 AAA domain K02450 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003684 411.0
LYD2_k127_2443096_3 membrane protein (homolog of Drosophila rhomboid) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008947 316.0
LYD2_k127_2443096_4 Domain of unknown function (DUF1820) - - - 0.0000000000000000000000000000000000000001753 159.0
LYD2_k127_2443096_5 Type II secretion system protein B - - - 0.00000000000000000000000000001738 129.0
LYD2_k127_2493333_0 F5/8 type C domain - - - 0.0 1240.0
LYD2_k127_2493333_1 ABC transporter transmembrane region - - - 3.713e-289 899.0
LYD2_k127_2493333_2 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000599 586.0
LYD2_k127_2493333_3 Extradiol ring-cleavage dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 368.0
LYD2_k127_2493333_4 Acid phosphatase homologues K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000002771 238.0
LYD2_k127_2493333_5 Domain of unknown function (DUF4399) - - - 0.000000000000000000000000000000000000000000000000000114 191.0
LYD2_k127_2493333_6 - - - - 0.000000000000000001601 98.0
LYD2_k127_252603_0 Acetolactate synthase K01652 - 2.2.1.6 6.861e-316 995.0
LYD2_k127_252603_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.967e-270 840.0
LYD2_k127_252603_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003857 566.0
LYD2_k127_252603_3 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 537.0
LYD2_k127_252603_4 Zinc carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000346 211.0
LYD2_k127_252603_5 acetolactate synthase, small K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000364 207.0
LYD2_k127_252603_6 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000001485 127.0
LYD2_k127_252909_0 amino acid peptide transporter K03305 - - 6.976e-216 680.0
LYD2_k127_252909_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 552.0
LYD2_k127_252909_10 membrane - - - 0.000000000000000000000001262 105.0
LYD2_k127_252909_11 - - - - 0.00000000000000005958 85.0
LYD2_k127_252909_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 411.0
LYD2_k127_252909_3 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 376.0
LYD2_k127_252909_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000253 224.0
LYD2_k127_252909_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000372 197.0
LYD2_k127_252909_6 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000163 189.0
LYD2_k127_252909_7 - - - - 0.0000000000000000000000000000000000000000000000000006372 195.0
LYD2_k127_252909_8 oxidation-reduction process K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000001488 182.0
LYD2_k127_253067_0 Amidohydrolase family - - - 1.216e-211 667.0
LYD2_k127_253067_1 - - - - 0.000000000000000000000000000000000000000000000000000000000001385 214.0
LYD2_k127_253067_2 Pectinacetylesterase - - - 0.000000000000000000000000000000000000000000000000007571 195.0
LYD2_k127_253067_3 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000002569 118.0
LYD2_k127_2545615_0 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 393.0
LYD2_k127_2545615_1 regulation of response to stimulus K01126,K21449 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001135 309.0
LYD2_k127_254811_0 TRAP-type C4-dicarboxylate transport system, large permease component - - - 7.495e-213 672.0
LYD2_k127_254811_1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 552.0
LYD2_k127_254811_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 463.0
LYD2_k127_254811_3 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009553 433.0
LYD2_k127_254811_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004888 411.0
LYD2_k127_254811_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000005367 208.0
LYD2_k127_254811_6 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000002074 173.0
LYD2_k127_254811_7 Protein of unknown function (DUF1244) K09948 - - 0.000000000000000000000000000000000000000009118 156.0
LYD2_k127_254811_8 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000008137 125.0
LYD2_k127_254811_9 molybdopterin biosynthesis K03750 - 2.10.1.1 0.00000000000005562 72.0
LYD2_k127_2554937_0 peptidase - - - 2.278e-260 814.0
LYD2_k127_2554937_1 Serine carboxypeptidase - - - 1.033e-206 656.0
LYD2_k127_2554937_10 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 340.0
LYD2_k127_2554937_11 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 337.0
LYD2_k127_2554937_12 membrane protein (homolog of Drosophila rhomboid) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 286.0
LYD2_k127_2554937_13 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001719 268.0
LYD2_k127_2554937_14 Flagellar basal body rod K02396 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002388 261.0
LYD2_k127_2554937_15 NADPH-dependent FMN reductase K19784 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001138 248.0
LYD2_k127_2554937_16 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001411 246.0
LYD2_k127_2554937_17 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000000000000000000000000698 236.0
LYD2_k127_2554937_18 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000001301 196.0
LYD2_k127_2554937_19 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000004757 179.0
LYD2_k127_2554937_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 625.0
LYD2_k127_2554937_20 membrane - - - 0.000000000000000000000000000000000000000000000002551 185.0
LYD2_k127_2554937_21 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000131 136.0
LYD2_k127_2554937_22 Belongs to the peptidase S8 family - - - 0.000000000000000001802 99.0
LYD2_k127_2554937_25 - - - - 0.0001191 50.0
LYD2_k127_2554937_3 aminopeptidase activity K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008204 509.0
LYD2_k127_2554937_4 GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003215 491.0
LYD2_k127_2554937_5 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007876 489.0
LYD2_k127_2554937_6 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 401.0
LYD2_k127_2554937_7 Tetrapyrrole (Corrin/Porphyrin) Methylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 404.0
LYD2_k127_2554937_8 CorA-like Mg2+ transporter protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 365.0
LYD2_k127_2554937_9 Belongs to the GST superfamily K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 343.0
LYD2_k127_2561157_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1399.0
LYD2_k127_2561157_1 methyl-accepting chemotaxis protein K07315 - 3.1.3.3 4.197e-214 675.0
LYD2_k127_2561157_2 abc transporter atp-binding protein K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 452.0
LYD2_k127_2561157_3 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 406.0
LYD2_k127_2561157_4 abc transporter, permease K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 390.0
LYD2_k127_2561157_5 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.00000000000000000000000000000000000000000000000000000000000000000002512 235.0
LYD2_k127_2561157_6 ABC-type transport auxiliary lipoprotein component K18480 - - 0.00000000000000000000000000000000000000000000000000000007276 214.0
LYD2_k127_2561157_7 Anti-sigma-factor antagonist K04749 - - 0.0000000000000000000000000000000000000000000000006893 182.0
LYD2_k127_2561157_9 Peptidoglycan-binding domain 1 protein - - - 0.00000002298 62.0
LYD2_k127_2562326_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 4.155e-269 843.0
LYD2_k127_2562326_1 FAD-linked oxidase - - - 3.202e-244 763.0
LYD2_k127_2562326_10 psiF repeat - - - 0.00000000000000000000000003671 113.0
LYD2_k127_2562326_11 psiF repeat - - - 0.0000000003311 63.0
LYD2_k127_2562326_2 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 4.091e-217 682.0
LYD2_k127_2562326_3 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 550.0
LYD2_k127_2562326_4 Esterase PHB depolymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 443.0
LYD2_k127_2562326_5 MerR family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000008891 216.0
LYD2_k127_2562326_6 transcriptional regulators containing the CopG Arc MetJ DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000055 192.0
LYD2_k127_2562326_7 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000001769 157.0
LYD2_k127_2562326_8 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000038 161.0
LYD2_k127_2562326_9 - - - - 0.0000000000000000000000000000000000009777 145.0
LYD2_k127_2573248_0 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003769 364.0
LYD2_k127_2573248_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 327.0
LYD2_k127_2573248_2 Protease prsW family - - - 0.000000000000000000000000000000000000001405 160.0
LYD2_k127_2619558_0 Prolyl oligopeptidase family K01303 - 3.4.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 459.0
LYD2_k127_2619558_1 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003095 242.0
LYD2_k127_2619558_2 Parallel beta-helix repeats - - - 0.000000199 64.0
LYD2_k127_2634889_1 guanyl-nucleotide exchange factor activity K20276 - - 0.00000000000000000001624 105.0
LYD2_k127_2634889_2 Domain of unknown function (DUF4347) - - - 0.000000000000002574 91.0
LYD2_k127_2634889_3 alginic acid biosynthetic process - - - 0.00009348 56.0
LYD2_k127_2636722_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 3.519e-275 857.0
LYD2_k127_2636722_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008333 535.0
LYD2_k127_2636722_2 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 509.0
LYD2_k127_2636722_3 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 419.0
LYD2_k127_2636722_4 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 410.0
LYD2_k127_2636722_5 ATPase or kinase K06925 - - 0.0000000000000000000000000000000000000000000002407 177.0
LYD2_k127_2649405_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1253.0
LYD2_k127_2649405_1 peptidase K07386 - - 0.0 1037.0
LYD2_k127_2649405_10 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000002821 246.0
LYD2_k127_2649405_11 paraquat-inducible protein A K03808 - - 0.00000000000000000000000000000000000000000000000003248 186.0
LYD2_k127_2649405_12 ABC-type transport auxiliary lipoprotein component K09857 - - 0.000000000000000000000000000000000000000000008634 180.0
LYD2_k127_2649405_13 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.00000000000000001564 84.0
LYD2_k127_2649405_2 His Kinase A (phosphoacceptor) domain - - - 0.0 1020.0
LYD2_k127_2649405_3 MlaD protein K06192 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005927 593.0
LYD2_k127_2649405_4 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates K01141 - 3.1.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006981 507.0
LYD2_k127_2649405_5 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 441.0
LYD2_k127_2649405_6 beta' subunit K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 413.0
LYD2_k127_2649405_7 Threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003064 412.0
LYD2_k127_2649405_8 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 304.0
LYD2_k127_2649405_9 paraquat-inducible protein A K03808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005303 261.0
LYD2_k127_2658038_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 3.166e-262 817.0
LYD2_k127_2658038_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 2.091e-260 806.0
LYD2_k127_2658038_2 transport system permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 380.0
LYD2_k127_2658038_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 352.0
LYD2_k127_2658038_4 - - - - 0.0000000000000000000000000000000000000000001533 172.0
LYD2_k127_2680417_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.07e-321 988.0
LYD2_k127_2680417_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 3.224e-303 936.0
LYD2_k127_2680417_10 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 418.0
LYD2_k127_2680417_11 SURF1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 340.0
LYD2_k127_2680417_12 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 344.0
LYD2_k127_2680417_13 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 290.0
LYD2_k127_2680417_14 cytochrome c oxidase assembly protein K02258 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001872 257.0
LYD2_k127_2680417_15 Glutamyl-tRNA amidotransferase K09117 - - 0.00000000000000000000000000000000000000000000000000000000000008993 217.0
LYD2_k127_2680417_16 signal sequence binding - - - 0.00000000000000000000000000000000000000000000000004096 191.0
LYD2_k127_2680417_17 Integral membrane protein (DUF2244) - - - 0.00000000000000000000000000000000000000000000242 169.0
LYD2_k127_2680417_18 Protein of unknown function (DUF2501) - - - 0.0000000000000000000000000000000000000000000115 166.0
LYD2_k127_2680417_19 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000004834 134.0
LYD2_k127_2680417_2 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 610.0
LYD2_k127_2680417_20 Protein of unknown function (DUF2909) - - - 0.00000000000000000000274 105.0
LYD2_k127_2680417_3 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 588.0
LYD2_k127_2680417_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006268 578.0
LYD2_k127_2680417_5 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 507.0
LYD2_k127_2680417_6 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 488.0
LYD2_k127_2680417_7 Bile acid K14347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 466.0
LYD2_k127_2680417_8 cytochrome oxidase assembly K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 441.0
LYD2_k127_2680417_9 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 421.0
LYD2_k127_2701719_0 Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol K03184,K18800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211 530.0
LYD2_k127_2701719_1 hydroxylase K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 507.0
LYD2_k127_2701719_2 - - - - 0.000000000000000000000000000000000001875 143.0
LYD2_k127_2701719_3 Phosphoglycerate mutase family K02226 - 3.1.3.73 0.0000000000000000000006455 109.0
LYD2_k127_2701719_4 ADP-ribose diphosphatase K08312 - - 0.00000008111 53.0
LYD2_k127_2708731_0 GGDEF domain - - - 0.0 1039.0
LYD2_k127_2708731_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008319 271.0
LYD2_k127_2708731_2 receptor - - - 0.000000000000000000000000000000000000002986 151.0
LYD2_k127_2708731_3 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000003439 52.0
LYD2_k127_2708734_0 receptor - - - 3.874e-252 802.0
LYD2_k127_2708734_1 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001212 261.0
LYD2_k127_2708734_2 Transcriptional regulator K07506 - - 0.0000000000000000000000000000000000000000000000000000000000000975 226.0
LYD2_k127_2708734_3 receptor - - - 0.000000000000000000000000000000002163 138.0
LYD2_k127_2709247_0 3-hydroxyacyl-coa dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0 1137.0
LYD2_k127_2709247_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1037.0
LYD2_k127_2709247_10 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000002358 133.0
LYD2_k127_2709247_11 Domain of unknown function (DUF4845) - - - 0.0000000000000000000000000000000002686 135.0
LYD2_k127_2709247_12 Negative regulator of sigma E activity - - - 0.00000000000005792 80.0
LYD2_k127_2709247_13 regulation of single-species biofilm formation - - - 0.00000002056 62.0
LYD2_k127_2709247_2 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.485e-261 808.0
LYD2_k127_2709247_3 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004966 609.0
LYD2_k127_2709247_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 579.0
LYD2_k127_2709247_5 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008458 446.0
LYD2_k127_2709247_6 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006615 422.0
LYD2_k127_2709247_7 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 404.0
LYD2_k127_2709247_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 343.0
LYD2_k127_2709247_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 299.0
LYD2_k127_2709831_0 Bacterial protein of unknown function (DUF899) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 422.0
LYD2_k127_2709831_1 Putative ParB-like nuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004849 295.0
LYD2_k127_2709831_2 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 291.0
LYD2_k127_2709831_3 RESPONSE REGULATOR receiver - - - 0.0000000000000000000000000000000000000000000000000007076 185.0
LYD2_k127_2709831_4 MarR family - - - 0.000000000000000000000000000000003417 135.0
LYD2_k127_2709831_5 - - - - 0.000000000000000006565 88.0
LYD2_k127_2709831_6 CHAD - - - 0.00000000000000005431 91.0
LYD2_k127_2713580_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0 1065.0
LYD2_k127_2713580_1 Sigma-54 interaction domain - - - 4.948e-231 722.0
LYD2_k127_2713580_2 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 472.0
LYD2_k127_2713580_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 442.0
LYD2_k127_2713580_4 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004477 422.0
LYD2_k127_2713580_5 6-phosphogluconolactonase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 344.0
LYD2_k127_2713580_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000001953 234.0
LYD2_k127_2713580_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000004249 125.0
LYD2_k127_2713580_8 - - - - 0.000000000000000000000000000001024 127.0
LYD2_k127_2713580_9 SEC-C Motif Domain Protein - - - 0.0000001659 60.0
LYD2_k127_2721547_0 Pathogenicity protein K09800 - - 0.0 1452.0
LYD2_k127_2721547_1 membrane K07278 - - 3.581e-229 723.0
LYD2_k127_2721547_2 Domain of unknown function (DUF5122) beta-propeller - - - 0.0000000000000002812 92.0
LYD2_k127_2721547_3 Cellulose synthase catalytic subunit (UDP-forming) K00694 - 2.4.1.12 0.000000835 50.0
LYD2_k127_2730981_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003219 548.0
LYD2_k127_2730981_1 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006531 421.0
LYD2_k127_2730981_2 Histidine kinase K07778 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 409.0
LYD2_k127_2730981_3 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 364.0
LYD2_k127_2730981_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07693 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 346.0
LYD2_k127_2730981_5 YCII-related domain - - - 0.0000000000000000000000002591 107.0
LYD2_k127_275386_0 transferase activity, transferring acyl groups K14658,K17840,K18815 - 2.3.1.59,2.3.1.82 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 629.0
LYD2_k127_2770299_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K11177 - 1.17.1.4 0.0 1052.0
LYD2_k127_2770299_1 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 3.699e-273 861.0
LYD2_k127_2770299_10 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001182 259.0
LYD2_k127_2770299_11 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002489 267.0
LYD2_k127_2770299_12 [2Fe-2S] binding domain K03518,K13483 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000103 245.0
LYD2_k127_2770299_13 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000000000000009642 157.0
LYD2_k127_2770299_14 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000605 96.0
LYD2_k127_2770299_15 ChaB K06197 - - 0.000000000000001569 78.0
LYD2_k127_2770299_16 Membrane protein YqjD - GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0043021,GO:0043024,GO:0044464,GO:0044877,GO:0060187,GO:0071944 - 0.000000000006167 70.0
LYD2_k127_2770299_17 Tetratricopeptide repeat domain protein - - - 0.00001769 59.0
LYD2_k127_2770299_2 Peptidase family M41 K03798 - - 4.262e-251 789.0
LYD2_k127_2770299_3 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 552.0
LYD2_k127_2770299_4 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 452.0
LYD2_k127_2770299_5 CO dehydrogenase flavoprotein C-terminal domain K11178 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 406.0
LYD2_k127_2770299_6 (ABC) transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 375.0
LYD2_k127_2770299_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006906 386.0
LYD2_k127_2770299_8 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 381.0
LYD2_k127_2770299_9 Acetoacetyl-CoA reductase K00023 - 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 332.0
LYD2_k127_2775012_0 Cysteine desulfurase activator complex subunit SufB K09014 - - 3.201e-303 931.0
LYD2_k127_2775012_1 peptidase M20 - - - 3.299e-264 821.0
LYD2_k127_2775012_10 abc transporter atp-binding protein K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 417.0
LYD2_k127_2775012_11 Phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 415.0
LYD2_k127_2775012_12 Phosphotransferase K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 437.0
LYD2_k127_2775012_13 Domain of unknown function (DUF1731) K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 373.0
LYD2_k127_2775012_14 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 365.0
LYD2_k127_2775012_15 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 327.0
LYD2_k127_2775012_16 Belongs to the DnaA family. HdA subfamily K10763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001287 298.0
LYD2_k127_2775012_17 Ribonuclease T2 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002952 271.0
LYD2_k127_2775012_18 abc transporter, permease K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001277 279.0
LYD2_k127_2775012_19 SET domain K07117 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000462 257.0
LYD2_k127_2775012_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 1.955e-228 714.0
LYD2_k127_2775012_20 Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000000000000000000000000000000003734 257.0
LYD2_k127_2775012_21 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000852 254.0
LYD2_k127_2775012_22 PFAM Cytochrome C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006277 252.0
LYD2_k127_2775012_23 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000024 245.0
LYD2_k127_2775012_24 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm K09774 - - 0.00000000000000000000000000000000000000000000000000000000000000000001957 246.0
LYD2_k127_2775012_25 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000004981 237.0
LYD2_k127_2775012_26 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA K11719 - - 0.0000000000000000000000000000000000000000000000000000000000000001492 231.0
LYD2_k127_2775012_27 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000001956 224.0
LYD2_k127_2775012_28 Rieske-like [2Fe-2S] domain K05710 - - 0.000000000000000000000000000000000000000000000000000000000823 203.0
LYD2_k127_2775012_29 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000002957 198.0
LYD2_k127_2775012_3 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 9.327e-212 663.0
LYD2_k127_2775012_30 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000001018 199.0
LYD2_k127_2775012_31 HutD - - - 0.0000000000000000000000000000000000000000000000000000885 201.0
LYD2_k127_2775012_32 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000005394 176.0
LYD2_k127_2775012_33 NifU-like N terminal domain - - - 0.00000000000000000000000000000000000000000000005121 173.0
LYD2_k127_2775012_34 Methyl-transferase - - - 0.0000000000000000000000000000000000000000001266 170.0
LYD2_k127_2775012_35 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001113 161.0
LYD2_k127_2775012_36 Cupin domain - - - 0.000000000000000000000000000000000000000001388 174.0
LYD2_k127_2775012_37 FMN_bind - - - 0.00000000000000000000000000000000000000001355 158.0
LYD2_k127_2775012_38 modulation protein K05808 - - 0.0000000000000000000000000000000000000126 147.0
LYD2_k127_2775012_39 PFAM Hemolysin-type calcium-binding region - - - 0.0000000000000000000000000000000000001814 160.0
LYD2_k127_2775012_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 612.0
LYD2_k127_2775012_40 Belongs to the BolA IbaG family - - - 0.0000000000000000000000000000000002469 134.0
LYD2_k127_2775012_43 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000004088 129.0
LYD2_k127_2775012_44 - - - - 0.000000000000000000000000000008574 128.0
LYD2_k127_2775012_45 - - - - 0.0000000000000000000000000008992 117.0
LYD2_k127_2775012_5 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 581.0
LYD2_k127_2775012_6 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 516.0
LYD2_k127_2775012_7 permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 477.0
LYD2_k127_2775012_8 Part of SUF system involved in inserting iron-sulfur clusters into proteins K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007699 445.0
LYD2_k127_2775012_9 Putative aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007315 435.0
LYD2_k127_2779432_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008269 447.0
LYD2_k127_2779432_1 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 GO:0003674,GO:0003824,GO:0004733,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.4.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 291.0
LYD2_k127_2779432_2 COG4240 Predicted kinase K15918 - 2.7.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000007347 276.0
LYD2_k127_2779432_3 Transmembrane exosortase (Exosortase_EpsH) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001024 239.0
LYD2_k127_2779432_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000000001257 228.0
LYD2_k127_2779432_5 Belongs to the UPF0145 family - - - 0.000000000000000000000000000000000000000003037 160.0
LYD2_k127_2779432_6 Dodecin K09165 - - 0.000000000000000000000000000000525 124.0
LYD2_k127_2780889_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 1.006e-236 743.0
LYD2_k127_2780889_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 604.0
LYD2_k127_2780889_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009718 493.0
LYD2_k127_2780889_3 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 373.0
LYD2_k127_2780889_4 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 358.0
LYD2_k127_2780889_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000000000000000000009315 171.0
LYD2_k127_2780889_6 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000001645 159.0
LYD2_k127_2780889_7 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000000000000001608 138.0
LYD2_k127_2813801_0 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 486.0
LYD2_k127_2813801_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 404.0
LYD2_k127_2813801_2 In Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 303.0
LYD2_k127_2813801_3 Resolvase, N terminal domain - - - 0.00002083 57.0
LYD2_k127_2826131_0 Efflux pump membrane transporter K18299 - - 0.0 1810.0
LYD2_k127_2826131_1 AcrB/AcrD/AcrF family - - - 0.0 1686.0
LYD2_k127_2826131_10 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 578.0
LYD2_k127_2826131_11 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 548.0
LYD2_k127_2826131_12 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 532.0
LYD2_k127_2826131_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 451.0
LYD2_k127_2826131_14 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003991 438.0
LYD2_k127_2826131_15 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003695 417.0
LYD2_k127_2826131_16 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 407.0
LYD2_k127_2826131_17 LytTr DNA-binding domain K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 393.0
LYD2_k127_2826131_18 Dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088 391.0
LYD2_k127_2826131_19 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 375.0
LYD2_k127_2826131_2 peptidase - - - 5e-324 1003.0
LYD2_k127_2826131_20 Glycosyl transferase family 41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 362.0
LYD2_k127_2826131_21 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000824 316.0
LYD2_k127_2826131_22 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008927 306.0
LYD2_k127_2826131_23 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006019 290.0
LYD2_k127_2826131_24 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001521 251.0
LYD2_k127_2826131_25 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001232 241.0
LYD2_k127_2826131_26 thiolester hydrolase activity K01259,K06889,K12269 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000001372 198.0
LYD2_k127_2826131_27 FR47-like protein - - - 0.0000000000000000000000000000000000000000000000000002912 189.0
LYD2_k127_2826131_28 Cytochrome C' - - - 0.00000000000000000000000000000000000000000000000002434 183.0
LYD2_k127_2826131_29 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.00000000000000000000000000000000000000000000000007913 178.0
LYD2_k127_2826131_3 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.7.7.13,5.3.1.8 2.808e-227 713.0
LYD2_k127_2826131_30 Acetyltransferase (GNAT) domain K03825 - - 0.000000000000000000000000000000000000000000000904 175.0
LYD2_k127_2826131_31 Low affinity iron permease - - - 0.00000000000000000000000000000000000000000001169 167.0
LYD2_k127_2826131_32 - - - - 0.0000000000000000000000000001944 121.0
LYD2_k127_2826131_4 peptidase - - - 2.896e-227 724.0
LYD2_k127_2826131_5 peptidase - - - 6.804e-218 695.0
LYD2_k127_2826131_6 peptidase - - - 6.179e-207 667.0
LYD2_k127_2826131_7 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006327 592.0
LYD2_k127_2826131_8 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008460,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016829,GO:0016835,GO:0016836,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 580.0
LYD2_k127_2826131_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18298,K19586 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 575.0
LYD2_k127_283066_0 Glucose / Sorbosone dehydrogenase - - - 1.649e-220 691.0
LYD2_k127_283066_1 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 614.0
LYD2_k127_283066_10 ABC transporter related K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001865 284.0
LYD2_k127_283066_11 PFAM molybdopterin oxidoreductase Fe4S4 region K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005296 276.0
LYD2_k127_283066_12 Chromate resistance exported protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001291 242.0
LYD2_k127_283066_13 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000006484 232.0
LYD2_k127_283066_14 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000004468 188.0
LYD2_k127_283066_15 response regulator receiver K13041 - - 0.000000000000000000000000000000000000000000000002284 182.0
LYD2_k127_283066_16 Tetratricopeptide repeat - - - 0.0000005063 61.0
LYD2_k127_283066_17 EF-hand domain pair - - - 0.00004089 53.0
LYD2_k127_283066_2 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 563.0
LYD2_k127_283066_3 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 558.0
LYD2_k127_283066_4 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 452.0
LYD2_k127_283066_5 Chromate resistance - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008457 411.0
LYD2_k127_283066_6 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 383.0
LYD2_k127_283066_7 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 342.0
LYD2_k127_283066_8 LytTr DNA-binding domain K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 301.0
LYD2_k127_283066_9 Domain of Unknown Function (DUF1259) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 296.0
LYD2_k127_2836735_0 Lipoprotein releasing system transmembrane protein K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 557.0
LYD2_k127_2836735_1 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000586 357.0
LYD2_k127_2836735_2 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000007695 217.0
LYD2_k127_2854761_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1282.0
LYD2_k127_2854761_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 381.0
LYD2_k127_2854761_2 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.00007439 46.0
LYD2_k127_2887153_0 PA domain - - - 0.0 1394.0
LYD2_k127_2887153_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 447.0
LYD2_k127_2887153_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007255 368.0
LYD2_k127_2887153_3 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000887 334.0
LYD2_k127_2887153_4 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0009058,GO:0016491,GO:0019748,GO:0044550,GO:0055114 1.14.13.9 0.000000000000000000000000000000000001192 141.0
LYD2_k127_2887153_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.00006318 45.0
LYD2_k127_2904844_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.3.5.3 0.0 1957.0
LYD2_k127_2904844_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008205 295.0
LYD2_k127_2904844_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000004203 250.0
LYD2_k127_2905887_0 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 0.0 1254.0
LYD2_k127_2905887_1 chemotaxis protein K02660 - - 1.194e-269 846.0
LYD2_k127_2905887_10 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000001864 172.0
LYD2_k127_2905887_11 methyltransferase - - - 0.000000000000000008936 87.0
LYD2_k127_2905887_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006079 578.0
LYD2_k127_2905887_3 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 458.0
LYD2_k127_2905887_4 Belongs to the prokaryotic GSH synthase family K01920 GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 443.0
LYD2_k127_2905887_5 tonb protein K03832 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009229 353.0
LYD2_k127_2905887_6 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000375 280.0
LYD2_k127_2905887_7 response regulator K02657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000272 236.0
LYD2_k127_2905887_8 chemotaxis signal transduction protein K02659 - - 0.000000000000000000000000000000000000000000000000000000000000001133 223.0
LYD2_k127_2905887_9 Response regulator receiver domain K02658 - - 0.00000000000000000000000000000000000000000000000005847 186.0
LYD2_k127_2931057_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.0 1101.0
LYD2_k127_2931057_1 Catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 7.96e-292 906.0
LYD2_k127_2931057_10 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000000000000005975 141.0
LYD2_k127_2931057_11 - - - - 0.000000000000000001021 92.0
LYD2_k127_2931057_2 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 597.0
LYD2_k127_2931057_3 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005018 563.0
LYD2_k127_2931057_4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 385.0
LYD2_k127_2931057_5 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005586 385.0
LYD2_k127_2931057_6 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 323.0
LYD2_k127_2931057_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002025 278.0
LYD2_k127_2931057_8 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000003673 251.0
LYD2_k127_2931057_9 Cell division protein - - - 0.000000000000000000000000000000000000000001131 164.0
LYD2_k127_2998655_0 Belongs to the AB hydrolase superfamily. MetX family K00641 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 381.0
LYD2_k127_2998655_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 381.0
LYD2_k127_2998655_2 Putative prokaryotic signal transducing protein - - - 0.0000000000000000000000000006621 115.0
LYD2_k127_2998655_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000007437 101.0
LYD2_k127_3095969_0 His Kinase A (phosphoacceptor) domain - - - 3.126e-201 653.0
LYD2_k127_3095969_1 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 586.0
LYD2_k127_3095969_2 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009212 271.0
LYD2_k127_3095969_3 Bacterioferritin-associated ferredoxin K02192 - - 0.0000000000000000000002218 98.0
LYD2_k127_3135929_0 LVIVD repeat - - - 0.0 1701.0
LYD2_k127_3135929_1 Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present K03657 - 3.6.4.12 0.0 1122.0
LYD2_k127_3135929_10 - - - - 0.000004037 52.0
LYD2_k127_3135929_2 - - - - 4.073e-196 631.0
LYD2_k127_3135929_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 623.0
LYD2_k127_3135929_4 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 518.0
LYD2_k127_3135929_5 Saccharopine dehydrogenase NADP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008419 460.0
LYD2_k127_3135929_6 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 361.0
LYD2_k127_3135929_7 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 331.0
LYD2_k127_3135929_8 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 346.0
LYD2_k127_3135929_9 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003298 253.0
LYD2_k127_317357_0 Glycosyl transferase family 41 - - - 3.972e-209 671.0
LYD2_k127_317357_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 7.456e-208 653.0
LYD2_k127_317357_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 592.0
LYD2_k127_317357_3 polyphosphate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 443.0
LYD2_k127_317357_4 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 294.0
LYD2_k127_317357_5 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000002457 233.0
LYD2_k127_317357_6 Fatty acid desaturase - - - 0.00000111 51.0
LYD2_k127_3179415_0 Flavin-binding monooxygenase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006901 498.0
LYD2_k127_3179415_1 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 420.0
LYD2_k127_3179415_2 Steryl acetyl hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 317.0
LYD2_k127_3179415_3 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005407 284.0
LYD2_k127_3179415_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003626 273.0
LYD2_k127_3179415_5 Acetyltransferase (GNAT) domain K03829 - - 0.000000000000000000000000000000000000000000000000000000000000000000007722 236.0
LYD2_k127_3179415_6 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000005744 233.0
LYD2_k127_3179415_7 Excalibur calcium-binding domain - - - 0.0000000000000000000000000000000000000000000000000003759 206.0
LYD2_k127_318122_0 Histidine kinase - - - 0.0 1397.0
LYD2_k127_318122_1 collagen metabolic process - - - 1.704e-247 799.0
LYD2_k127_318122_10 - - - - 0.00000001306 65.0
LYD2_k127_318122_11 Cell division protein DamX K03112 GO:0003674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0030428,GO:0032153,GO:0042834,GO:0044464,GO:0097367 - 0.0000002193 63.0
LYD2_k127_318122_2 Domain of unknown function (DUF697) K06883 - - 3.578e-195 617.0
LYD2_k127_318122_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019353,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0033526,GO:0034641,GO:0042168,GO:0042440,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 576.0
LYD2_k127_318122_4 50S ribosome-binding GTPase K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 589.0
LYD2_k127_318122_5 Negative regulator of beta-lactamase expression K01447,K21469 - 3.4.16.4,3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000004113 267.0
LYD2_k127_318122_6 Cytochrome B561 K12262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004752 260.0
LYD2_k127_318122_7 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000004387 229.0
LYD2_k127_318122_8 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000005946 237.0
LYD2_k127_318122_9 - - - - 0.00000000000000000000000000000000004051 145.0
LYD2_k127_3182475_0 Acetyl-coenzyme A synthetase N-terminus - - - 0.0 1148.0
LYD2_k127_3182475_1 FAD binding domain - - - 7.623e-216 678.0
LYD2_k127_3182475_10 - - - - 0.00000000563 60.0
LYD2_k127_3182475_2 Flavin containing amine oxidoreductase - - - 6.165e-211 661.0
LYD2_k127_3182475_3 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 614.0
LYD2_k127_3182475_4 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 554.0
LYD2_k127_3182475_5 Bacterial membrane protein YfhO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 549.0
LYD2_k127_3182475_6 dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595 366.0
LYD2_k127_3182475_7 GtrA-like protein - - - 0.000000000000000000000000000000000000000005114 167.0
LYD2_k127_3182475_8 - - - - 0.00000000000000000000000000000000004369 154.0
LYD2_k127_3182475_9 ASPIC and UnbV - - - 0.000000000008784 78.0
LYD2_k127_3186692_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002538 436.0
LYD2_k127_3186692_1 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000000000000000000000000000001203 228.0
LYD2_k127_3186692_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000002898 109.0
LYD2_k127_3186692_3 - - - - 0.0000000000000000001363 94.0
LYD2_k127_3186692_4 domain, Protein - - - 0.0000000000000000006003 101.0
LYD2_k127_3186692_5 domain, Protein - - - 0.00000000000279 70.0
LYD2_k127_3186692_6 AAA domain - - - 0.0001013 51.0
LYD2_k127_3193875_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 563.0
LYD2_k127_3193875_1 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 537.0
LYD2_k127_3193875_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 352.0
LYD2_k127_3193875_3 Belongs to the aspartate glutamate racemases family K01779 - 5.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006335 333.0
LYD2_k127_3193875_4 acid phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001557 280.0
LYD2_k127_3193875_5 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001154 250.0
LYD2_k127_3193875_7 O-methyltransferase - - - 0.00000000000000000000000000158 113.0
LYD2_k127_3193875_8 PFAM O-methyltransferase, family 3 - - - 0.00000000002404 70.0
LYD2_k127_3196245_0 cysteine protease - - - 1.221e-258 814.0
LYD2_k127_3196245_1 Amidohydrolase family - - - 1.896e-216 679.0
LYD2_k127_3196245_10 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008743 264.0
LYD2_k127_3196245_11 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000000000001578 174.0
LYD2_k127_3196245_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000001146 176.0
LYD2_k127_3196245_13 - - - - 0.000000000000000000000000000000000000000007833 164.0
LYD2_k127_3196245_14 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000002334 159.0
LYD2_k127_3196245_15 PBS lyase HEAT-like repeat - - - 0.000000000000000000000000000000001455 145.0
LYD2_k127_3196245_16 Tetratricopeptide repeat - - - 0.000000000000000000000000000361 125.0
LYD2_k127_3196245_17 Protein of unknown function (DUF3309) - - - 0.000000000000000000505 87.0
LYD2_k127_3196245_18 - - - - 0.0000000001291 68.0
LYD2_k127_3196245_19 Protein of unknown function, DUF488 - - - 0.000005084 54.0
LYD2_k127_3196245_2 Belongs to the DEAD box helicase family K05591 - 3.6.4.13 4.148e-196 623.0
LYD2_k127_3196245_3 Serine threonine protein kinase involved in cell cycle control K07178 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 448.0
LYD2_k127_3196245_4 epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 439.0
LYD2_k127_3196245_5 Co Zn Cd cation transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 415.0
LYD2_k127_3196245_6 Protein of unknown function (DUF3089) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 364.0
LYD2_k127_3196245_7 methyltransferase activity K21310 - 2.1.1.334 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006762 332.0
LYD2_k127_3196245_8 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007038 304.0
LYD2_k127_3196245_9 Putative zinc- or iron-chelating domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002747 271.0
LYD2_k127_320041_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.263e-247 774.0
LYD2_k127_320041_1 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 3.6.4.13 5.465e-226 717.0
LYD2_k127_320041_10 YXWGXW repeat (2 copies) - - - 0.000000000000000000000000004096 115.0
LYD2_k127_320041_11 General secretion pathway protein C K02452 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000002295 119.0
LYD2_k127_320041_12 type II secretion system protein E K02454 - - 0.0001409 46.0
LYD2_k127_320041_2 Major facilitator superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 582.0
LYD2_k127_320041_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 545.0
LYD2_k127_320041_4 general secretion pathway protein D K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003502 526.0
LYD2_k127_320041_5 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 457.0
LYD2_k127_320041_6 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 437.0
LYD2_k127_320041_7 TraB family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 377.0
LYD2_k127_320041_8 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003769 344.0
LYD2_k127_320041_9 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000000003761 193.0
LYD2_k127_3204811_0 Major Facilitator Superfamily K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000521 574.0
LYD2_k127_3204811_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009418 374.0
LYD2_k127_3204811_2 Predicted membrane protein (DUF2254) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 334.0
LYD2_k127_3204811_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001313 289.0
LYD2_k127_3204811_4 Transcriptional regulator - - - 0.000000000000000000000000000000000000000003408 161.0
LYD2_k127_3204811_5 COG2346, Truncated hemoglobins K03406,K06886 GO:0001505,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008941,GO:0009056,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0016491,GO:0016705,GO:0016708,GO:0017144,GO:0019825,GO:0020012,GO:0020037,GO:0030682,GO:0034641,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043207,GO:0044237,GO:0044248,GO:0044270,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046210,GO:0046906,GO:0048037,GO:0050896,GO:0051213,GO:0051410,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:0075136,GO:0097159,GO:0098754,GO:1901363,GO:1901698,GO:2001057 - 0.00000000000000000000000000000000002604 139.0
LYD2_k127_3204811_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0001146 55.0
LYD2_k127_3204811_7 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0001512 55.0
LYD2_k127_3212182_0 Peptidase M56 - - - 1.713e-216 698.0
LYD2_k127_3212182_1 fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007257 447.0
LYD2_k127_3212182_2 Dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009573 406.0
LYD2_k127_3212182_3 prephenate dehydrogenase (NADP+) activity K00210 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 373.0
LYD2_k127_3212182_4 receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000001224 242.0
LYD2_k127_3212182_5 Penicillinase repressor - - - 0.00000000000000000000000000000000000000000000000000001498 192.0
LYD2_k127_3212182_6 - - - - 0.000000000000000000000000000000000000000000000001776 179.0
LYD2_k127_3212182_7 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000001372 145.0
LYD2_k127_3212182_8 transcriptional regulator - - - 0.0000000000000003313 90.0
LYD2_k127_3236189_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 401.0
LYD2_k127_3236189_1 serine threonine protein kinase K08282 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 382.0
LYD2_k127_3236189_2 DNA-templated transcription, initiation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006139 247.0
LYD2_k127_3236189_3 DNA-templated transcription, initiation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000393 248.0
LYD2_k127_3236189_4 DNA-templated transcription, initiation - - - 0.00000000000000000000000000001643 127.0
LYD2_k127_3236189_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000003229 85.0
LYD2_k127_3236189_6 Protein of unknown function (DUF1232) - - - 0.0000000000000001179 88.0
LYD2_k127_3247668_0 Cytochrome C biogenesis K02198 - - 0.0 1075.0
LYD2_k127_3247668_1 Transfers a succinyl group from succinyl-CoA to L- serine, forming succinyl-L-serine K00641 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 605.0
LYD2_k127_3247668_2 Cytochrome C biogenesis K02200 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 377.0
LYD2_k127_3247668_3 oxidoreductase K05275 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 314.0
LYD2_k127_3247668_4 Thiol disulfide interchange protein K02199 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 291.0
LYD2_k127_3247668_5 methyltransferase K03439 - 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000005707 218.0
LYD2_k127_3247668_6 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000000000004663 198.0
LYD2_k127_3247668_7 High potential iron-sulfur protein - - - 0.0000000000000000000000000000000003531 138.0
LYD2_k127_3247668_8 - - - - 0.000000000000000006448 89.0
LYD2_k127_3259659_0 Dak2 K07030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008483 561.0
LYD2_k127_3259659_1 amino acid K03294,K03759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 419.0
LYD2_k127_3259659_10 - - - - 0.00005575 51.0
LYD2_k127_3259659_2 Crp-like helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002671 259.0
LYD2_k127_3259659_3 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001539 240.0
LYD2_k127_3259659_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000002564 207.0
LYD2_k127_3259659_5 - - - - 0.00000000000000000000000000000000000000000000000002326 191.0
LYD2_k127_3259659_6 Cytochrome c - - - 0.000000000000000000000000000000000000000000007157 169.0
LYD2_k127_3259659_8 WD40-like Beta Propeller Repeat - - - 0.000000000000000136 81.0
LYD2_k127_3259659_9 CsbD-like - - - 0.0000000000006027 71.0
LYD2_k127_3267454_0 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 5.648e-228 709.0
LYD2_k127_3267454_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 466.0
LYD2_k127_3267454_3 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 450.0
LYD2_k127_3281477_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000001616 216.0
LYD2_k127_3281477_1 - - - - 0.0000000000000000000000000000000000000000000005053 186.0
LYD2_k127_3281477_2 Glycosyl transferase, group K20444 - - 0.0000000000000000000000000000000000006617 155.0
LYD2_k127_3281477_3 ATP hydrolysis coupled proton transport - - - 0.00000000000000000000000000000000004858 156.0
LYD2_k127_3281477_4 ATP hydrolysis coupled proton transport - - - 0.0000000000000000000000000000000003281 153.0
LYD2_k127_3282242_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 7.487e-200 631.0
LYD2_k127_3282242_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 1.726e-195 614.0
LYD2_k127_3282242_2 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 476.0
LYD2_k127_3282242_3 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000000000002958 126.0
LYD2_k127_3282242_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000000004877 87.0
LYD2_k127_3306364_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 5.489e-300 923.0
LYD2_k127_3306364_1 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019222,GO:0019439,GO:0034353,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 308.0
LYD2_k127_3306364_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000006118 112.0
LYD2_k127_3306364_11 histone H2A K63-linked ubiquitination K10914 - - 0.0000000000000000000000772 109.0
LYD2_k127_3306364_12 STAS domain - - - 0.00000000000000007373 88.0
LYD2_k127_3306364_13 - K02116 - - 0.000000000001529 73.0
LYD2_k127_3306364_14 Phospholipase/Carboxylesterase - - - 0.0001115 53.0
LYD2_k127_3306364_15 histone H2A K63-linked ubiquitination K02283 - - 0.0008269 51.0
LYD2_k127_3306364_2 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007048 289.0
LYD2_k127_3306364_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008689 248.0
LYD2_k127_3306364_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000000000000000000001527 206.0
LYD2_k127_3306364_5 synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000000001598 206.0
LYD2_k127_3306364_6 FHA domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000005685 189.0
LYD2_k127_3306364_7 Phasin protein - - - 0.0000000000000000000000000000000000000000000003612 170.0
LYD2_k127_3306364_8 - - - - 0.000000000000000000000000000002011 139.0
LYD2_k127_3306364_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000003256 113.0
LYD2_k127_3333380_0 Radical SAM superfamily - - - 5.179e-278 861.0
LYD2_k127_3333380_1 Belongs to the CarA family K01956 GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0019627,GO:0019752,GO:0032991,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 523.0
LYD2_k127_3333380_2 2OG-Fe(II) oxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 385.0
LYD2_k127_3333380_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009579 327.0
LYD2_k127_3337696_0 X-Pro dipeptidyl-peptidase (S15 family) - - - 2.669e-248 788.0
LYD2_k127_3337696_1 Cardiolipin synthase - - - 3.941e-246 779.0
LYD2_k127_3337696_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 428.0
LYD2_k127_3337696_3 CMP-binding protein K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 319.0
LYD2_k127_3337696_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001393 272.0
LYD2_k127_3337696_5 phosphoglycerate mutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001599 236.0
LYD2_k127_3337696_6 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000001123 197.0
LYD2_k127_3341283_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0 1088.0
LYD2_k127_3341283_1 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009532 355.0
LYD2_k127_3341283_2 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 334.0
LYD2_k127_3341283_3 Zn-dependent hydrolases including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 328.0
LYD2_k127_3341283_4 7,8-dihydro-8-oxoguanine-triphosphatase K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 310.0
LYD2_k127_3341283_5 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002118 265.0
LYD2_k127_3341283_6 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000001643 211.0
LYD2_k127_3341283_7 AraC-like ligand binding domain - - - 0.000000000000000000007827 99.0
LYD2_k127_335044_0 UPF0761 membrane protein K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 466.0
LYD2_k127_335044_1 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 454.0
LYD2_k127_335044_2 Belongs to the WrbA family K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 305.0
LYD2_k127_335044_3 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002461 250.0
LYD2_k127_335044_4 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000000000000000002473 107.0
LYD2_k127_3351724_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0 1221.0
LYD2_k127_3351724_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582 - 3.1.11.5 0.0 1043.0
LYD2_k127_3351724_10 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 313.0
LYD2_k127_3351724_11 abc transporter atp-binding protein K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 333.0
LYD2_k127_3351724_12 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 309.0
LYD2_k127_3351724_13 Secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 301.0
LYD2_k127_3351724_14 Beta-ketoacyl synthase, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001586 263.0
LYD2_k127_3351724_16 - - - - 0.00000000000000000000000000000000000000000000000764 176.0
LYD2_k127_3351724_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 7.647e-233 730.0
LYD2_k127_3351724_3 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 616.0
LYD2_k127_3351724_4 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 558.0
LYD2_k127_3351724_5 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 542.0
LYD2_k127_3351724_6 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007846 521.0
LYD2_k127_3351724_7 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 386.0
LYD2_k127_3351724_8 Glycosyl Transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 381.0
LYD2_k127_3351724_9 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008139 371.0
LYD2_k127_3376083_0 Peptidase family M1 domain - - - 0.0 1364.0
LYD2_k127_3376083_1 acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 599.0
LYD2_k127_3376083_2 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 476.0
LYD2_k127_3376083_3 - - - - 0.000000000000000000000000073 109.0
LYD2_k127_3376083_4 dehydrogenase K00382 - 1.8.1.4 0.000000000000000008475 83.0
LYD2_k127_3402268_0 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 503.0
LYD2_k127_3402268_1 electron transfer flavoprotein beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008293 436.0
LYD2_k127_3402268_2 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 410.0
LYD2_k127_3402268_3 calcium- and calmodulin-responsive adenylate cyclase activity K01406,K07004 - 3.4.24.40 0.00000000000000000000000000000000000000007868 167.0
LYD2_k127_3402268_4 EF-hand, calcium binding motif - - - 0.00000000000000000000001445 112.0
LYD2_k127_3402268_5 YXWGXW repeat (2 copies) - - - 0.000000000000000000005043 99.0
LYD2_k127_3419562_0 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 496.0
LYD2_k127_3419562_1 Major Facilitator Superfamily K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 451.0
LYD2_k127_3419562_2 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 441.0
LYD2_k127_3419562_3 converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA K06445 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 385.0
LYD2_k127_3419562_4 MOSC N-terminal beta barrel domain K07140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003499 364.0
LYD2_k127_3419562_5 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000003112 278.0
LYD2_k127_3419562_6 Domain of unknown function (DUF4442) - - - 0.000000000000000000000000000000000000000000000000007038 189.0
LYD2_k127_3436060_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 455.0
LYD2_k127_3436060_1 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 299.0
LYD2_k127_3436060_2 - - - - 0.0000000000000000000000000000000001791 143.0
LYD2_k127_34480_0 Conserved hypothetical protein 698 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 582.0
LYD2_k127_34480_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 309.0
LYD2_k127_34480_2 ECF sigma factor - - - 0.00000000000000000000000000000000003804 145.0
LYD2_k127_3469951_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.366e-244 768.0
LYD2_k127_3469951_1 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 447.0
LYD2_k127_3469951_2 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 324.0
LYD2_k127_3469951_3 GIY-YIG catalytic domain K07461 - - 0.00000000000000000000000000003356 120.0
LYD2_k127_3469951_4 COG2931 RTX toxins and related Ca2 -binding - - - 0.000000000000000000000003984 118.0
LYD2_k127_3469951_5 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.0000000004285 65.0
LYD2_k127_3469951_6 - - - - 0.000000005038 68.0
LYD2_k127_3511979_0 Carboxylesterase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 380.0
LYD2_k127_3511979_1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 344.0
LYD2_k127_3511979_2 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008067 321.0
LYD2_k127_3511979_3 mRNA catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005001 244.0
LYD2_k127_3511979_4 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.000000000000000000000000000000000000000000000000000000000001084 224.0
LYD2_k127_3533204_0 Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 0.0 1890.0
LYD2_k127_3533204_1 Single-stranded-DNA-specific exonuclease K07462 - - 1.6e-233 739.0
LYD2_k127_3533204_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 9.464e-200 626.0
LYD2_k127_3533204_3 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005296 589.0
LYD2_k127_3533204_4 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 475.0
LYD2_k127_3533204_5 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008661 294.0
LYD2_k127_3533204_6 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002027 244.0
LYD2_k127_3575692_0 Belongs to the arginase family K01476 - 3.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002888 497.0
LYD2_k127_3575692_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 317.0
LYD2_k127_3575692_2 Bacterial protein of unknown function (DUF937) - - - 0.00000000000000000000000000000000000000000000000000000001663 203.0
LYD2_k127_3575692_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000002381 113.0
LYD2_k127_3575692_4 serine-type endopeptidase activity K20276 - - 0.000000000000009078 87.0
LYD2_k127_3615116_0 Glycosyl transferase, group K20444 - - 1.6e-322 1007.0
LYD2_k127_3615116_1 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 326.0
LYD2_k127_3665921_0 ATP-binding protein K06915 - - 4.943e-257 805.0
LYD2_k127_3665921_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 1.622e-199 625.0
LYD2_k127_3665921_10 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.00000000000000000000000000000000000000000000767 173.0
LYD2_k127_3665921_11 - - - - 0.00000000000000000000000000000000001982 139.0
LYD2_k127_3665921_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 580.0
LYD2_k127_3665921_3 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 503.0
LYD2_k127_3665921_4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 490.0
LYD2_k127_3665921_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00090 - 1.1.1.215,1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 439.0
LYD2_k127_3665921_6 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 415.0
LYD2_k127_3665921_7 Tfp pilus assembly protein FimV K08086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004796 374.0
LYD2_k127_3665921_8 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 342.0
LYD2_k127_3665921_9 SCO1/SenC K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006951 280.0
LYD2_k127_3674380_0 Molydopterin dinucleotide binding domain K00123 - 1.17.1.9 0.0 1483.0
LYD2_k127_3674380_1 Translation Elongation Factor K03833 - - 2.122e-247 779.0
LYD2_k127_3674380_2 outer membrane efflux protein - - - 4.572e-216 681.0
LYD2_k127_3674380_3 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 3.611e-194 616.0
LYD2_k127_3674380_4 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003766 570.0
LYD2_k127_3674380_5 formate dehydrogenase K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 522.0
LYD2_k127_3674380_6 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 501.0
LYD2_k127_3674380_7 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009001 419.0
LYD2_k127_3674380_8 Necessary for formate dehydrogenase activity K02380 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 344.0
LYD2_k127_3674380_9 Prokaryotic cytochrome b561 K00127 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 304.0
LYD2_k127_3717079_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 8.73e-258 802.0
LYD2_k127_3717079_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 525.0
LYD2_k127_3717079_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 348.0
LYD2_k127_3772339_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 1.325e-255 792.0
LYD2_k127_3772339_1 Belongs to the beta-ketoacyl-ACP synthases family K14660 - - 1.613e-201 638.0
LYD2_k127_3772339_10 Belongs to the arginase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 301.0
LYD2_k127_3772339_11 acyl carrier protein K02078 - - 0.00000000000000000000000000000000002195 139.0
LYD2_k127_3772339_12 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000001593 103.0
LYD2_k127_3772339_13 EamA-like transporter family - - - 0.0000000000263 77.0
LYD2_k127_3772339_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 619.0
LYD2_k127_3772339_3 Esterase lipase K03928 - 3.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 401.0
LYD2_k127_3772339_4 phenazine biosynthesis protein PhzF family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 377.0
LYD2_k127_3772339_5 Repeat of Unknown Function (DUF347) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003795 374.0
LYD2_k127_3772339_6 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 337.0
LYD2_k127_3772339_7 chitinase K01183 - 3.2.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 340.0
LYD2_k127_3772339_8 Putative Phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005969 327.0
LYD2_k127_3772339_9 Peptidogalycan biosysnthesis/recognition - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 344.0
LYD2_k127_3812963_0 DNA ligase K01971 - 6.5.1.1 9.742e-287 905.0
LYD2_k127_3812963_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 509.0
LYD2_k127_3812963_2 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 493.0
LYD2_k127_3812963_3 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 454.0
LYD2_k127_3812963_4 Catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 453.0
LYD2_k127_3812963_5 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 298.0
LYD2_k127_3812963_6 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004281 276.0
LYD2_k127_3812963_7 phosphorelay signal transduction system K14987 - - 0.00000000000000000000000000009459 126.0
LYD2_k127_3812963_8 Histidine kinase - - - 0.000000000000000000001003 104.0
LYD2_k127_3812963_9 HupE / UreJ protein - - - 0.00000000000000017 80.0
LYD2_k127_3816991_0 Glycosyl hydrolase family 65, C-terminal domain K01838,K05342 - 2.4.1.64,5.4.2.6 0.0 1065.0
LYD2_k127_3816991_1 alpha-galactosidase K07407 - 3.2.1.22 1.708e-320 996.0
LYD2_k127_3816991_2 Glycogen debranching enzyme - - - 2.243e-235 760.0
LYD2_k127_3816991_3 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 593.0
LYD2_k127_3816991_4 Domain of Unknown Function (DUF1080) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 370.0
LYD2_k127_3816991_5 regulatory protein, DeoR K02081 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000862 267.0
LYD2_k127_3816991_6 COG2755 Lysophospholipase L1 and related esterases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000288 247.0
LYD2_k127_3816991_7 Transcriptional regulator - - - 0.000000000000000000000000002087 125.0
LYD2_k127_3816991_8 Putative 2OG-Fe(II) oxygenase - - - 0.00000000000000000001928 94.0
LYD2_k127_3823017_0 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 1.477e-248 770.0
LYD2_k127_3823017_1 2-keto-4-pentenoate hydratase K16171 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004112 546.0
LYD2_k127_3823017_2 maleylacetoacetate isomerase K01800 - 5.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 312.0
LYD2_k127_3823017_3 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000003742 158.0
LYD2_k127_3823017_4 Methyltransferase domain - - - 0.00000000000000000000000000000000000003649 155.0
LYD2_k127_3823017_5 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.00000000000000001446 81.0
LYD2_k127_3828196_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 6.448e-319 999.0
LYD2_k127_3828196_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003586 556.0
LYD2_k127_3828196_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008633 470.0
LYD2_k127_3828196_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 357.0
LYD2_k127_3828196_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 285.0
LYD2_k127_3828196_5 peptidoglycan-binding protein, lysm - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 236.0
LYD2_k127_3828196_6 peptidoglycan-binding protein, lysm - - - 0.00000000000000000000000000000000000000000000000000000000000000156 222.0
LYD2_k127_3828196_7 DNA processing protein DprA K04096 - - 0.0001959 44.0
LYD2_k127_3830516_0 Heat shock 70 kDa protein K04043 - - 0.0 1069.0
LYD2_k127_3830516_1 May be involved in recombinational repair of damaged DNA K03631 - - 1.125e-251 787.0
LYD2_k127_3830516_10 PFAM von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000383 291.0
LYD2_k127_3830516_11 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001979 256.0
LYD2_k127_3830516_12 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001281 254.0
LYD2_k127_3830516_13 von Willebrand factor (vWF) type A domain K16259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002568 256.0
LYD2_k127_3830516_14 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000005044 240.0
LYD2_k127_3830516_15 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000000000000003137 236.0
LYD2_k127_3830516_16 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.000000000000000000000000000000000000000000000000000001052 205.0
LYD2_k127_3830516_17 Oligoketide cyclase - - - 0.00000000000000000000000000000000000000000000000000009094 190.0
LYD2_k127_3830516_18 OsmC-like protein - - - 0.000000000000000000000000000000000000000001946 166.0
LYD2_k127_3830516_19 Protein of unknown function (DUF4242) - - - 0.0000000000000000000000000000009926 126.0
LYD2_k127_3830516_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 550.0
LYD2_k127_3830516_21 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000000000006367 93.0
LYD2_k127_3830516_22 - K16258 - - 0.0004214 50.0
LYD2_k127_3830516_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 541.0
LYD2_k127_3830516_4 AraC family transcriptional regulator K18991 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 529.0
LYD2_k127_3830516_5 PFAM ATPase associated with various cellular activities, AAA_3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 458.0
LYD2_k127_3830516_6 Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 427.0
LYD2_k127_3830516_7 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 407.0
LYD2_k127_3830516_8 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 295.0
LYD2_k127_3830516_9 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000152 282.0
LYD2_k127_3830557_0 Large extracellular alpha-helical protein K06894 - - 0.0 1978.0
LYD2_k127_3830557_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0 1664.0
LYD2_k127_3830557_10 PBP superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 474.0
LYD2_k127_3830557_11 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 424.0
LYD2_k127_3830557_12 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000066 379.0
LYD2_k127_3830557_13 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007457 377.0
LYD2_k127_3830557_14 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 368.0
LYD2_k127_3830557_15 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 346.0
LYD2_k127_3830557_16 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004682 327.0
LYD2_k127_3830557_17 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001474 286.0
LYD2_k127_3830557_18 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006837 255.0
LYD2_k127_3830557_19 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002776 260.0
LYD2_k127_3830557_2 AcrB/AcrD/AcrF family K07787 - - 0.0 1586.0
LYD2_k127_3830557_20 serine protease - - - 0.000000000000000000000000000000000000000000000000000000000000000107 237.0
LYD2_k127_3830557_21 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000008656 220.0
LYD2_k127_3830557_22 Sigma-70, region 4 - - - 0.000000000000000000000000000000000001346 148.0
LYD2_k127_3830557_23 PEP-CTERM motif - - - 0.00000000000000000000000000000004421 131.0
LYD2_k127_3830557_24 Domain of unknown function (DUF2383) - - - 0.00000000000000000000000000000573 124.0
LYD2_k127_3830557_25 Protein of unknown function (DUF559) - - - 0.00000000000000000000000000006585 121.0
LYD2_k127_3830557_27 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000000000000522 106.0
LYD2_k127_3830557_28 bacterial OsmY and nodulation domain K04065 - - 0.0000000000000000002194 96.0
LYD2_k127_3830557_29 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.000000000000001806 85.0
LYD2_k127_3830557_3 penicillin-binding protein K05367 - 2.4.1.129 1.035e-313 979.0
LYD2_k127_3830557_30 NADH-dependant formate dehydrogenase delta subunit FdsD K00126 - 1.17.1.9 0.000000000000004571 80.0
LYD2_k127_3830557_31 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.0000000000002123 83.0
LYD2_k127_3830557_32 Protein of unknown function (DUF1328) - - - 0.0000000000009558 73.0
LYD2_k127_3830557_33 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.000000001861 58.0
LYD2_k127_3830557_34 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000009729 57.0
LYD2_k127_3830557_35 - - - - 0.00000001333 61.0
LYD2_k127_3830557_37 Bacterial protein of unknown function (Gcw_chp) - - - 0.00006486 53.0
LYD2_k127_3830557_39 Putative zinc-finger - - - 0.0003955 50.0
LYD2_k127_3830557_4 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 8.216e-296 932.0
LYD2_k127_3830557_40 - - - - 0.0008026 49.0
LYD2_k127_3830557_5 Major facilitator Superfamily - - - 1.139e-269 840.0
LYD2_k127_3830557_6 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding K00124 - - 2.595e-249 780.0
LYD2_k127_3830557_7 Belongs to the DNA photolyase family K01669 - 4.1.99.3 1.948e-197 626.0
LYD2_k127_3830557_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 498.0
LYD2_k127_3830557_9 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007589 486.0
LYD2_k127_3833204_0 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 530.0
LYD2_k127_3833204_1 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 520.0
LYD2_k127_3833204_2 Putative zinc-finger - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008332 276.0
LYD2_k127_3833204_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000136 267.0
LYD2_k127_3833204_4 Membrane protein implicated in regulation of membrane protease activity K07340 - - 0.0000000000000000000000000000000000000000000000000001561 188.0
LYD2_k127_3833204_5 Cupredoxin-like domain - - - 0.00000000000000000000000000000000000009046 146.0
LYD2_k127_3833204_6 Sigma-70, region 4 - - - 0.0000000000000000000000000000008183 128.0
LYD2_k127_3833204_7 WD40-like Beta Propeller Repeat - - - 0.0000000000000002544 93.0
LYD2_k127_3833204_8 Long-chain fatty acid transport protein K06076 - - 0.000000000002474 79.0
LYD2_k127_3833204_9 Belongs to the peptidase S8 family - - - 0.00001233 58.0
LYD2_k127_3845859_0 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 369.0
LYD2_k127_3845859_1 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009365 349.0
LYD2_k127_3845859_2 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006542 286.0
LYD2_k127_3845859_3 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004375 279.0
LYD2_k127_3845859_4 Protein of unknown function, DUF485 - - - 0.0000000000000000000000000000000000000000000005365 168.0
LYD2_k127_3845859_5 Helix-turn-helix - - - 0.00000000000000000000000000000005434 133.0
LYD2_k127_3845859_6 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000001719 115.0
LYD2_k127_3845859_7 inositol 2-dehydrogenase activity - - - 0.000000003662 60.0
LYD2_k127_3852310_0 E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate K00164 - 1.2.4.2 0.0 1522.0
LYD2_k127_3852310_1 E3 component of 2-oxoglutarate dehydrogenase complex K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008899 589.0
LYD2_k127_3852310_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 520.0
LYD2_k127_3852310_3 transcriptional regulator K18850 - 1.14.11.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 478.0
LYD2_k127_3852310_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005715 353.0
LYD2_k127_3852310_5 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004793 283.0
LYD2_k127_3856466_0 cellulose binding - - - 0.0 1214.0
LYD2_k127_3856466_1 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 6.96e-282 875.0
LYD2_k127_3856466_10 glutathione s-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002184 272.0
LYD2_k127_3856466_11 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006362 260.0
LYD2_k127_3856466_12 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002329 244.0
LYD2_k127_3856466_13 Domain of unknown function (DUF1993) K09983 - - 0.000000000000000000000000000000000000000000000000000000000000000000008947 239.0
LYD2_k127_3856466_14 Forkhead associated domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000006899 239.0
LYD2_k127_3856466_15 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000002992 225.0
LYD2_k127_3856466_16 Cell Wall - - - 0.0000000000000000000000000000000000000000000000000001301 188.0
LYD2_k127_3856466_17 Outer Membrane Lipoprotein K06077 - - 0.0000000000000000000000000000000000000000002564 164.0
LYD2_k127_3856466_18 Cold-shock protein K03704 - - 0.0000000000000000000000000000000000003487 142.0
LYD2_k127_3856466_19 TIR domain - - - 0.00000000000000000000000000003623 136.0
LYD2_k127_3856466_2 Divalent cation transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 511.0
LYD2_k127_3856466_20 Peptidase C39 family K06992 - - 0.000000000000000000000000001493 126.0
LYD2_k127_3856466_21 cytochrome - - - 0.000000000000000000000000003926 126.0
LYD2_k127_3856466_22 - - - - 0.000000000000000000000000006519 119.0
LYD2_k127_3856466_23 Domain of unknown function (DUF4190) - - - 0.000000000000000000000001261 108.0
LYD2_k127_3856466_24 PFAM RNA recognition motif - - - 0.00000000000000000002646 93.0
LYD2_k127_3856466_25 Hep Hag repeat protein - - - 0.000000000000002729 90.0
LYD2_k127_3856466_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 467.0
LYD2_k127_3856466_4 Hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 416.0
LYD2_k127_3856466_5 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 398.0
LYD2_k127_3856466_6 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004529 402.0
LYD2_k127_3856466_7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 349.0
LYD2_k127_3856466_8 Acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 331.0
LYD2_k127_3856466_9 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 295.0
LYD2_k127_3858005_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 2.276e-287 894.0
LYD2_k127_3858005_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 5.309e-212 661.0
LYD2_k127_3858005_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 551.0
LYD2_k127_3858005_3 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 446.0
LYD2_k127_3858005_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 417.0
LYD2_k127_3858005_5 Belongs to the inositol monophosphatase superfamily K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 353.0
LYD2_k127_3858005_6 Preprotein translocase subunit YajC K03210 - - 0.00000000000000000000000000000000000001866 146.0
LYD2_k127_3858005_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000003789 51.0
LYD2_k127_3891324_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 1.539e-243 755.0
LYD2_k127_3891324_1 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 441.0
LYD2_k127_3891324_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007003 301.0
LYD2_k127_3891324_3 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000000000005032 156.0
LYD2_k127_3891324_4 rubredoxin - - - 0.000000000000000000000000005111 113.0
LYD2_k127_3891324_5 Cys/Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.00000000000000000000007051 99.0
LYD2_k127_3902831_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0 1116.0
LYD2_k127_3902831_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 1.292e-314 977.0
LYD2_k127_3902831_2 Belongs to the IUNH family K01239 - 3.2.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 437.0
LYD2_k127_3902831_3 Lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 398.0
LYD2_k127_3902831_4 endoribonuclease - - - 0.0000000000000000000000000000000000000000000000000001168 192.0
LYD2_k127_3902831_5 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000000000000000000000000000001752 154.0
LYD2_k127_3902831_6 Small-conductance mechanosensitive channel - - - 0.000000000000000000000000000000000000005588 148.0
LYD2_k127_3902831_7 - - - - 0.0000392 53.0
LYD2_k127_3916690_0 peptidase - - - 0.0 1074.0
LYD2_k127_3916690_1 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 478.0
LYD2_k127_3916690_2 Galactose oxidase, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 500.0
LYD2_k127_3916690_3 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007719 410.0
LYD2_k127_3916690_4 Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 353.0
LYD2_k127_3916690_5 Response regulator of the LytR AlgR family K08083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 309.0
LYD2_k127_3918207_0 transglutaminase - - - 2.416e-207 656.0
LYD2_k127_3918207_1 Signal transduction histidine kinase K07637 - 2.7.13.3 1.315e-194 619.0
LYD2_k127_3918207_10 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 326.0
LYD2_k127_3918207_11 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 314.0
LYD2_k127_3918207_12 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 307.0
LYD2_k127_3918207_13 Protein of unknown function (DUF1348) K09958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 291.0
LYD2_k127_3918207_14 guanyl-nucleotide exchange factor activity K20276,K21449 - - 0.00000000000000000000000000000000000006106 159.0
LYD2_k127_3918207_15 decarboxylase K01607 - 4.1.1.44 0.000000000000000000000000000000000004674 144.0
LYD2_k127_3918207_16 Transglutaminase-like superfamily - - - 0.00000000000000000000000004659 115.0
LYD2_k127_3918207_17 - - - - 0.00000000000000844 76.0
LYD2_k127_3918207_18 beta-lactamase - - - 0.000002813 54.0
LYD2_k127_3918207_19 CHAT domain - - - 0.0003855 54.0
LYD2_k127_3918207_2 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 586.0
LYD2_k127_3918207_3 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 575.0
LYD2_k127_3918207_4 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 556.0
LYD2_k127_3918207_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 528.0
LYD2_k127_3918207_6 Aldo/keto reductase family K05275 - 1.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 499.0
LYD2_k127_3918207_7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 442.0
LYD2_k127_3918207_8 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000456 421.0
LYD2_k127_3918207_9 protein conserved in bacteria containing a pentein-type domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 381.0
LYD2_k127_39222_0 dna polymerase K02337 - 2.7.7.7 0.0 1635.0
LYD2_k127_39222_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1137.0
LYD2_k127_39222_10 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006995 357.0
LYD2_k127_39222_11 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 335.0
LYD2_k127_39222_12 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 303.0
LYD2_k127_39222_13 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000001901 253.0
LYD2_k127_39222_14 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000002335 218.0
LYD2_k127_39222_15 Outer membrane protein (OmpH-like) - - - 0.00000000000000000000000000000000000000003734 158.0
LYD2_k127_39222_16 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000006749 81.0
LYD2_k127_39222_2 Sulfatase - - - 8.911e-255 798.0
LYD2_k127_39222_3 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 552.0
LYD2_k127_39222_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 548.0
LYD2_k127_39222_5 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 516.0
LYD2_k127_39222_6 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 502.0
LYD2_k127_39222_7 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006216 492.0
LYD2_k127_39222_8 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 499.0
LYD2_k127_39222_9 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 395.0
LYD2_k127_3948433_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1632.0
LYD2_k127_3948433_1 Male sterility protein - - - 0.0 1114.0
LYD2_k127_3948433_10 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007654 254.0
LYD2_k127_3948433_11 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000003878 228.0
LYD2_k127_3948433_12 Poly(hydroxyalcanoate) granule associated protein (phasin) - - - 0.000000000000000000000000000000000000000000000000000000000000003104 224.0
LYD2_k127_3948433_13 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000005146 239.0
LYD2_k127_3948433_14 BolA family transcriptional regulator K09780 - - 0.00000000000000000000000000000000000000000004681 166.0
LYD2_k127_3948433_15 Acyl CoA binding protein - - - 0.00000000000000000000000000000000000000006118 154.0
LYD2_k127_3948433_16 Belongs to the BolA IbaG family K05527 - - 0.000000000000000000000000000007761 123.0
LYD2_k127_3948433_17 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000005744 126.0
LYD2_k127_3948433_18 polyhydroxyalkanoic acid - - - 0.00000000000000000000000001162 115.0
LYD2_k127_3948433_19 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000004382 98.0
LYD2_k127_3948433_2 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 626.0
LYD2_k127_3948433_20 Putative porin - - - 0.00000000000001514 86.0
LYD2_k127_3948433_21 granule-associated protein - - - 0.0000009533 56.0
LYD2_k127_3948433_3 Belongs to the pseudouridine synthase RsuA family K06178 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 557.0
LYD2_k127_3948433_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 496.0
LYD2_k127_3948433_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 438.0
LYD2_k127_3948433_6 Bacterial transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 347.0
LYD2_k127_3948433_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 294.0
LYD2_k127_3948433_8 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins K03528 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001749 291.0
LYD2_k127_3948433_9 FHA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008073 281.0
LYD2_k127_3949479_0 Major Facilitator Superfamily K03446 - - 3.277e-215 677.0
LYD2_k127_3949479_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 560.0
LYD2_k127_3949479_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 512.0
LYD2_k127_3949479_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000011 275.0
LYD2_k127_3949479_4 Zinc-binding dehydrogenase - - - 0.0000000002631 63.0
LYD2_k127_3952458_0 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 9.857e-242 752.0
LYD2_k127_3952458_1 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases K02433 - 6.3.5.6,6.3.5.7 4.43e-200 647.0
LYD2_k127_3952458_2 Threonine/Serine exporter, ThrE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 446.0
LYD2_k127_3952458_3 alkylated DNA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 300.0
LYD2_k127_3952458_4 Transcriptional regulator GntR family - - - 0.000000000000000000000000000000000001432 149.0
LYD2_k127_3952458_5 dna-binding protein K03746 - - 0.00000000000000000000000007797 108.0
LYD2_k127_3955653_0 glutaminyl-tRNA synthetase K01886 - 6.1.1.18 1.952e-316 977.0
LYD2_k127_3955653_1 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001313 266.0
LYD2_k127_3955653_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000004212 262.0
LYD2_k127_3955851_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 3.025e-247 776.0
LYD2_k127_3955851_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 3.578e-243 763.0
LYD2_k127_3955851_10 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002245 274.0
LYD2_k127_3955851_11 nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001055 259.0
LYD2_k127_3955851_12 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000000000000000000000004326 231.0
LYD2_k127_3955851_13 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000001324 201.0
LYD2_k127_3955851_14 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000000000000000001179 183.0
LYD2_k127_3955851_15 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000005674 182.0
LYD2_k127_3955851_16 Transmembrane protein 43 - - - 0.00000000000000000000000000000000000000000003765 168.0
LYD2_k127_3955851_17 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000000003276 161.0
LYD2_k127_3955851_18 - - - - 0.000000000000000000000000000000000000006864 151.0
LYD2_k127_3955851_19 ferredoxin - - - 0.00000000000000000000000000000000004707 135.0
LYD2_k127_3955851_2 NADP transhydrogenase K00324 - 1.6.1.2 1.084e-198 624.0
LYD2_k127_3955851_20 MAPEG family - - - 0.0000000000000000000000000005464 123.0
LYD2_k127_3955851_21 - K06073 - - 0.00000001038 62.0
LYD2_k127_3955851_22 Aminotransferase class I and II K00375 - - 0.00005159 46.0
LYD2_k127_3955851_3 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004901 503.0
LYD2_k127_3955851_4 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006074 484.0
LYD2_k127_3955851_5 metallo-beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 463.0
LYD2_k127_3955851_6 Exodeoxyribonuclease IX - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007886 457.0
LYD2_k127_3955851_7 Acetyltransferase (GNAT) domain K22479 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 295.0
LYD2_k127_3955851_8 DNA mismatch repair protein MutT K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003761 287.0
LYD2_k127_3955851_9 glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005633 284.0
LYD2_k127_3987373_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 9.124e-259 799.0
LYD2_k127_3987373_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 5.117e-254 788.0
LYD2_k127_3987373_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 370.0
LYD2_k127_3987373_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 349.0
LYD2_k127_3987373_4 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006639 348.0
LYD2_k127_3987373_5 NADH dehydrogenase K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 327.0
LYD2_k127_3987373_6 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 328.0
LYD2_k127_3987373_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000000000000000000000000005242 181.0
LYD2_k127_3987373_8 Preprotein translocase subunit SecG K03075 - - 0.00000000000000000000000000000000001409 141.0
LYD2_k127_3987373_9 Methyltransferase type 11 - - - 0.00000000007094 67.0
LYD2_k127_4023779_0 DNA ligase K01971 - 6.5.1.1 0.0 1355.0
LYD2_k127_4023779_1 Acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 390.0
LYD2_k127_4023779_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000079 368.0
LYD2_k127_4023779_3 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 300.0
LYD2_k127_4023779_5 Belongs to the UPF0337 (CsbD) family - - - 0.00000000003117 66.0
LYD2_k127_4023779_6 Cardiolipin synthase K06132 - - 0.000001612 50.0
LYD2_k127_4024152_0 Efflux pump membrane transporter K18138 - - 0.0 1504.0
LYD2_k127_4024152_1 Peptidase family M3 K01414 - 3.4.24.70 1.288e-310 997.0
LYD2_k127_4024152_10 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 402.0
LYD2_k127_4024152_11 pteridine-dependent deoxygenase K18240 - 4.1.3.40,4.1.3.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 379.0
LYD2_k127_4024152_12 Acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005261 375.0
LYD2_k127_4024152_13 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 349.0
LYD2_k127_4024152_14 Belongs to the UPF0149 family K07039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 345.0
LYD2_k127_4024152_15 Alpha beta K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 289.0
LYD2_k127_4024152_16 Transcriptional regulator K03566 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001113 282.0
LYD2_k127_4024152_17 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001694 273.0
LYD2_k127_4024152_18 Acyl carrier protein phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000625 217.0
LYD2_k127_4024152_19 dehydratase - - - 0.000000000000000000000000000000000000000000000000000001646 194.0
LYD2_k127_4024152_2 peptidase K01278 - 3.4.14.5 7.473e-246 765.0
LYD2_k127_4024152_20 acyl carrier protein K02078 - - 0.00000000000000000000000000000001793 131.0
LYD2_k127_4024152_21 membrane - - - 0.00000000000000000000000000000004745 143.0
LYD2_k127_4024152_22 dehydratase - - - 0.0000000000000000000000001193 111.0
LYD2_k127_4024152_3 Isocitrate dehydrogenase - - - 2.069e-229 716.0
LYD2_k127_4024152_4 Cyclic nucleotide-monophosphate binding domain - - - 4.706e-210 668.0
LYD2_k127_4024152_5 Protein tyrosine kinase - - - 1.305e-199 643.0
LYD2_k127_4024152_6 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 512.0
LYD2_k127_4024152_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 485.0
LYD2_k127_4024152_8 Reduces the stability of FtsZ polymers in the presence of ATP K06916 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 480.0
LYD2_k127_4024152_9 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 475.0
LYD2_k127_4028453_0 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 582.0
LYD2_k127_4028453_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 429.0
LYD2_k127_4028453_2 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 377.0
LYD2_k127_4028453_3 von willebrand factor, type A K07114 - - 0.000000000000000001527 90.0
LYD2_k127_4028453_5 SnoaL-like domain K01822 - 5.3.3.1 0.00000001123 64.0
LYD2_k127_4036667_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 3.698e-229 714.0
LYD2_k127_4036667_1 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 385.0
LYD2_k127_4036667_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 366.0
LYD2_k127_4036667_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000001192 241.0
LYD2_k127_4036667_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000001324 241.0
LYD2_k127_4036667_5 Tfp pilus assembly protein FimV K08086 - - 0.000000000000000016 82.0
LYD2_k127_4075666_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 1.534e-214 675.0
LYD2_k127_4075666_1 Prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 1.43e-211 660.0
LYD2_k127_4075666_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005006 578.0
LYD2_k127_4075666_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 478.0
LYD2_k127_4075666_4 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003526 409.0
LYD2_k127_4075666_5 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004018 351.0
LYD2_k127_4075666_6 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000003135 55.0
LYD2_k127_4128023_0 Cellulose synthase catalytic subunit (UDP-forming) K00694 - 2.4.1.12 0.0 1312.0
LYD2_k127_4128023_1 PA domain - - - 4.717e-194 649.0
LYD2_k127_4128023_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily K06968 - 2.1.1.186 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 432.0
LYD2_k127_4128023_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001374 269.0
LYD2_k127_4128023_4 Belongs to the peptidase S11 family K01286 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000002893 237.0
LYD2_k127_4142245_0 Molecular chaperone. Has ATPase activity K04079 - - 0.0 1078.0
LYD2_k127_4142245_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 383.0
LYD2_k127_4142245_2 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000000000000000000002197 236.0
LYD2_k127_4142245_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000001471 212.0
LYD2_k127_4142245_4 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000005518 147.0
LYD2_k127_4160497_0 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 506.0
LYD2_k127_4160497_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 387.0
LYD2_k127_4160497_2 MAPEG family - - - 0.0000000000000000000000000000000000000000000000000000001576 197.0
LYD2_k127_4160497_3 - K19168 - - 0.0000000000000000000000000000004086 127.0
LYD2_k127_4160497_4 - - - - 0.00000000000000000000000000006781 120.0
LYD2_k127_4160497_5 OmpA-like transmembrane domain K03286 - - 0.0000000000000000007902 87.0
LYD2_k127_4160497_6 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000001021 76.0
LYD2_k127_4213181_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.0 1137.0
LYD2_k127_4213181_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 580.0
LYD2_k127_4213181_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008369 312.0
LYD2_k127_4213181_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000491 168.0
LYD2_k127_4213181_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000124 76.0
LYD2_k127_422194_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 3.161e-301 931.0
LYD2_k127_422194_1 Serine dehydratase K01752 - 4.3.1.17 3.53e-263 814.0
LYD2_k127_422194_2 glycosyl transferase family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 511.0
LYD2_k127_422194_3 Hep Hag repeat protein K19233,K21449 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 497.0
LYD2_k127_422194_4 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 389.0
LYD2_k127_422194_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000376 219.0
LYD2_k127_422194_6 SMART phosphoesterase PA-phosphatase related - - - 0.00000000000000000000000000000000000000000000008679 181.0
LYD2_k127_422194_7 Domain of unknown function (DUF697) K06883 - - 0.00000000000000000000000000000754 119.0
LYD2_k127_422194_8 thiol-disulfide isomerase and - - - 0.00000000000000000000000000001654 119.0
LYD2_k127_422194_9 Sigma-70 region 2 K03088 - - 0.00000001276 63.0
LYD2_k127_4252286_0 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 511.0
LYD2_k127_4252286_1 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006568 421.0
LYD2_k127_4252286_2 Membrane-bound serine protease (ClpP class) K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 422.0
LYD2_k127_4271290_0 receptor K16092 - - 1.016e-243 772.0
LYD2_k127_4271290_1 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 505.0
LYD2_k127_4271290_2 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 469.0
LYD2_k127_4271290_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000004857 136.0
LYD2_k127_4271290_4 Cysteine-rich CPXCG - - - 0.0000000000000000000002384 100.0
LYD2_k127_4271290_5 Protein of unknown function (DUF1631) - - - 0.00000000000000000007971 100.0
LYD2_k127_4271605_0 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides K01465 - 3.5.2.3 1.743e-245 762.0
LYD2_k127_4271605_1 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002756 280.0
LYD2_k127_4271605_2 SufE protein probably involved in Fe-S center assembly K02426 - - 0.00000000000000000000000000000000000000000000000000000000000000000003432 235.0
LYD2_k127_4271605_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000002235 208.0
LYD2_k127_4271605_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000002581 121.0
LYD2_k127_4299813_0 oxidase, subunit K00425 - 1.10.3.14 1.039e-293 908.0
LYD2_k127_4299813_1 Splits dipeptides with a prolyl residue in the C- terminal position K01271 - 3.4.13.9 1.046e-233 729.0
LYD2_k127_4299813_2 membrane K14205 - 2.3.2.3 7.145e-199 629.0
LYD2_k127_4299813_3 oxidase, subunit K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 532.0
LYD2_k127_4299813_4 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 387.0
LYD2_k127_4299813_5 PFAM virulence factor family protein - - - 0.000000000000000000000000000000000000000000000000000000005838 213.0
LYD2_k127_4299813_6 PilZ domain - - - 0.00000000000000000000008225 102.0
LYD2_k127_4299813_7 Membrane bound YbgT-like protein - - - 0.00000000003403 64.0
LYD2_k127_4315108_0 acetyl-coa hydrolase - - - 2.173e-273 860.0
LYD2_k127_4315108_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 5.169e-226 706.0
LYD2_k127_4315108_2 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 350.0
LYD2_k127_4315108_3 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 345.0
LYD2_k127_4315108_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001047 294.0
LYD2_k127_4315108_5 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000005009 231.0
LYD2_k127_4315108_6 - - - - 0.0000000000000000000000000000000000000000000000000000000001151 213.0
LYD2_k127_4315108_7 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000000000000000000000000000000000000000000005499 186.0
LYD2_k127_4315108_8 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000002272 162.0
LYD2_k127_4315633_0 Glycine cleavage system P-protein K00282 - 1.4.4.2 9.433e-228 710.0
LYD2_k127_4315633_1 beta-lactamase K01467 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 557.0
LYD2_k127_4315633_2 Glycoside hydrolase family 44 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 364.0
LYD2_k127_4315633_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000000000000000000000000000001625 220.0
LYD2_k127_4315633_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000006768 217.0
LYD2_k127_4315633_5 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000001045 192.0
LYD2_k127_4315633_6 This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis K03764 GO:0000096,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006355,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019752,GO:0031323,GO:0031326,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140110,GO:1901564,GO:1901605,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000001647 138.0
LYD2_k127_4372799_0 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 5.679e-289 903.0
LYD2_k127_4372799_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 8.547e-266 822.0
LYD2_k127_4372799_10 - - - - 0.00000007186 65.0
LYD2_k127_4372799_2 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 3.107e-200 629.0
LYD2_k127_4372799_3 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 440.0
LYD2_k127_4372799_4 Tetratricopeptide repeat K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008182 433.0
LYD2_k127_4372799_5 cation diffusion facilitator family transporter K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003888 373.0
LYD2_k127_4372799_6 Belongs to the Fur family K09823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006633 273.0
LYD2_k127_4372799_7 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000616 203.0
LYD2_k127_4372799_9 MerC mercury resistance protein - - - 0.000000000000000000000000000000000004629 145.0
LYD2_k127_4430868_0 PFAM GMC oxidoreductase - - - 0.0 1014.0
LYD2_k127_4430868_1 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005123 539.0
LYD2_k127_4430868_2 Gluconate 2-dehydrogenase subunit 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009863 279.0
LYD2_k127_4430868_3 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001958 261.0
LYD2_k127_4452472_0 MatE - - - 1.556e-237 740.0
LYD2_k127_4452472_1 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 478.0
LYD2_k127_4452472_2 AraC-type DNA-binding domain-containing proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 403.0
LYD2_k127_4452472_3 serine-type endopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 391.0
LYD2_k127_4452472_4 - - - - 0.00000000000000000000000000000000000002842 156.0
LYD2_k127_4452472_5 guanyl-nucleotide exchange factor activity K20276,K21449 - - 0.000000000000000000000000008047 125.0
LYD2_k127_4452472_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000008308 82.0
LYD2_k127_4456646_0 Belongs to the radical SAM superfamily. PqqE family K06139 - - 3.122e-204 661.0
LYD2_k127_4456646_1 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 565.0
LYD2_k127_4456646_10 - - - - 0.00000000000000000000000000000000000000000000000000000003426 205.0
LYD2_k127_4456646_11 Thioredoxin-like - - - 0.00000000000000000000000000000000000004543 153.0
LYD2_k127_4456646_12 coenzyme PQQ synthesis K06138 - - 0.000000000000000000000000000005924 120.0
LYD2_k127_4456646_13 Domain of unknown function (DUF4266) - - - 0.0000000000000000000000000625 108.0
LYD2_k127_4456646_14 Helicase K03724 - - 0.00000000000003038 74.0
LYD2_k127_4456646_2 Histidine kinase K07675,K20263 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004721,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 493.0
LYD2_k127_4456646_3 Protein of unknown function (DUF3570) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 459.0
LYD2_k127_4456646_4 May be involved in the transport of PQQ or its precursor to the periplasm K06136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009298 435.0
LYD2_k127_4456646_5 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 406.0
LYD2_k127_4456646_6 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 397.0
LYD2_k127_4456646_7 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 361.0
LYD2_k127_4456646_8 helix_turn_helix, Lux Regulon K07689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009115 314.0
LYD2_k127_4456646_9 receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003372 306.0
LYD2_k127_4460845_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1168.0
LYD2_k127_4460845_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 576.0
LYD2_k127_4460845_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005379 469.0
LYD2_k127_4460845_3 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 458.0
LYD2_k127_4460845_4 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 424.0
LYD2_k127_4460845_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 386.0
LYD2_k127_4460845_6 Belongs to the ArsC family - - - 0.000000000000000000000000000000000000000000000000000004201 192.0
LYD2_k127_4501517_0 Zinc carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 579.0
LYD2_k127_4501517_1 CHAT domain - - - 0.0000000000000000000000000000000000000000000000000003703 212.0
LYD2_k127_4501517_2 Serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000002691 196.0
LYD2_k127_4501517_3 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog - - - 0.00000000000000000000000000000002969 133.0
LYD2_k127_4501517_4 ECF sigma factor K03088 - - 0.000008976 58.0
LYD2_k127_4515987_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 462.0
LYD2_k127_4515987_1 PFAM FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 431.0
LYD2_k127_4515987_2 transmembrane transporter activity K03535,K08194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 377.0
LYD2_k127_4515987_3 Lipase (class 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008551 242.0
LYD2_k127_4515987_4 Fibronectin type 3 domain - - - 0.0000000000000000000000000000000000000000000000000000000002664 225.0
LYD2_k127_4515987_5 membrane - - - 0.0000000000000000000000000000000000000001462 169.0
LYD2_k127_4515987_6 regulation of response to stimulus - - - 0.0000000000000000000000000001162 134.0
LYD2_k127_4515987_7 Belongs to the glycosyl hydrolase 32 family K01119 - 3.1.3.6,3.1.4.16 0.0000000000000000000000000007835 131.0
LYD2_k127_4515987_8 Major Facilitator Superfamily - - - 0.0000000006496 64.0
LYD2_k127_453739_0 GGDEF domain - - - 0.0 1208.0
LYD2_k127_453739_1 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000007332 256.0
LYD2_k127_453739_2 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000000000006585 145.0
LYD2_k127_453739_3 TIGRFAM TIGR02449 family protein K09892 - - 0.0000000000000000000001834 99.0
LYD2_k127_453739_4 EVE domain-containing protein - - - 0.00000000000000001303 82.0
LYD2_k127_453904_0 amp-dependent synthetase and ligase - - - 3.093e-317 999.0
LYD2_k127_453904_1 Catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 562.0
LYD2_k127_453904_10 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000000002545 83.0
LYD2_k127_453904_2 Belongs to the agmatine deiminase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 531.0
LYD2_k127_453904_3 Dienelactone hydrolase family K07100 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 492.0
LYD2_k127_453904_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001418 267.0
LYD2_k127_453904_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000000002041 185.0
LYD2_k127_453904_7 - - - - 0.0000000000000000000000000000000002704 134.0
LYD2_k127_453904_8 Protein required for attachment to host cells - - - 0.0000000000000000000000000000001492 129.0
LYD2_k127_453904_9 - - - - 0.00000000000000000000008569 104.0
LYD2_k127_4566849_0 Sortilin, neurotensin receptor 3, - - - 1.509e-320 1014.0
LYD2_k127_4566849_1 two-component system sensor-response regulator hybrid protein - - - 1.746e-211 698.0
LYD2_k127_4566849_2 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 573.0
LYD2_k127_4566849_3 Aminotransferase class I and II K00375 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 492.0
LYD2_k127_4566849_4 FeS assembly SUF system protein SufT - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 308.0
LYD2_k127_4566849_5 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000003712 233.0
LYD2_k127_4566849_6 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000001538 190.0
LYD2_k127_4566849_7 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000005736 181.0
LYD2_k127_4566849_8 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000009191 162.0
LYD2_k127_4566849_9 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000003244 159.0
LYD2_k127_4574961_0 Type II/IV secretion system protein K12203 - - 2.564e-220 687.0
LYD2_k127_4574961_1 twitching motility protein K02669 - - 1.611e-200 638.0
LYD2_k127_4574961_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005708 570.0
LYD2_k127_4574961_3 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 478.0
LYD2_k127_4574961_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 322.0
LYD2_k127_4574961_5 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009804 292.0
LYD2_k127_4574961_6 YGGT family - - - 0.0000000000000000000000000000000000000000000000000000008898 197.0
LYD2_k127_4574961_7 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000005757 184.0
LYD2_k127_4574961_8 methyltransferase - - - 0.0000000000000000000000000000000001276 140.0
LYD2_k127_4576037_0 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 531.0
LYD2_k127_4576037_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002484 273.0
LYD2_k127_4576037_2 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000001643 202.0
LYD2_k127_4576037_3 Adenylate cyclase - - - 0.00000000000000000000006764 111.0
LYD2_k127_4576037_4 - - - - 0.000000000000000000007388 103.0
LYD2_k127_4576510_0 His Kinase A (phosphoacceptor) domain - - - 9.186e-249 783.0
LYD2_k127_4576510_1 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 562.0
LYD2_k127_4576510_10 cheY-homologous receiver domain K07814 - - 0.000000005312 65.0
LYD2_k127_4576510_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 385.0
LYD2_k127_4576510_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000004391 201.0
LYD2_k127_4576510_4 - - - - 0.0000000000000000000000000000000000000000851 158.0
LYD2_k127_4576510_5 - - - - 0.0000000000000000000000000000000006595 137.0
LYD2_k127_4576510_6 - - - - 0.000000000000000000003286 95.0
LYD2_k127_4576510_8 - - - - 0.000000000000007078 77.0
LYD2_k127_4576510_9 Domain of unknown function (DUF4142) K08995 - - 0.000000000003041 74.0
LYD2_k127_4626118_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 1.605e-226 708.0
LYD2_k127_4626118_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 548.0
LYD2_k127_4626118_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002528 270.0
LYD2_k127_4626118_3 protein conserved in bacteria K15539 - - 0.0000000000000000000000000000000000000000000000000000000000000128 230.0
LYD2_k127_4626118_4 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000006202 208.0
LYD2_k127_4626118_5 molybdopterin biosynthesis K03750 - 2.10.1.1 0.00000000000000006102 83.0
LYD2_k127_4626118_6 type IV pilus biogenesis stability protein PilW K02656 - - 0.000003356 49.0
LYD2_k127_4662967_0 PQQ-like domain - - - 0.0 1130.0
LYD2_k127_4662967_1 Carbon starvation protein K06200 - - 0.0 1130.0
LYD2_k127_4662967_10 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000000000000000000000000006641 222.0
LYD2_k127_4662967_11 Bacterial periplasmic substrate-binding proteins - - - 0.0000000000000000000000000000000000000000000000001399 181.0
LYD2_k127_4662967_12 small protein - - - 0.000000000000000000000000002764 111.0
LYD2_k127_4662967_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.743e-245 762.0
LYD2_k127_4662967_3 TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 618.0
LYD2_k127_4662967_4 transport protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 541.0
LYD2_k127_4662967_5 Domain of unknown function (DUF4105) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 543.0
LYD2_k127_4662967_6 Phosphate starvation-inducible protein PhoH K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 500.0
LYD2_k127_4662967_7 Transporter K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 450.0
LYD2_k127_4662967_8 oxidoreductases (related to aryl-alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 442.0
LYD2_k127_4662967_9 Lactonase, 7-bladed beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 343.0
LYD2_k127_4669841_0 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 638.0
LYD2_k127_4669841_1 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 332.0
LYD2_k127_4669841_2 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 314.0
LYD2_k127_4669841_3 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000253 243.0
LYD2_k127_4669841_4 ECF sigma factor - - - 0.0000000000000000000000000000000000000000000003038 177.0
LYD2_k127_4669841_5 LysE type translocator - - - 0.0000000000000000000000000000000000000000000004144 174.0
LYD2_k127_4669841_6 Methyltransferase domain - - - 0.00000000000000000000000000000000000002501 153.0
LYD2_k127_4669841_7 Domain of unknown function (DUF1772) - - - 0.00000000000000000000007784 104.0
LYD2_k127_4669841_8 Domain of unknown function (DUF5122) beta-propeller K14274,K20276,K21449 - - 0.000000000000001482 90.0
LYD2_k127_4669841_9 protein kinase activity - - - 0.0004874 46.0
LYD2_k127_4704921_0 Histidine ammonia-lyase K01745 - 4.3.1.3 0.0 1051.0
LYD2_k127_4704921_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 9.259e-210 661.0
LYD2_k127_4704921_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.0000000000000000000000004221 120.0
LYD2_k127_4759235_0 MMPL family - - - 0.0 1135.0
LYD2_k127_4759235_1 Bacterial virulence factor lipase N-terminal - - - 4.313e-249 791.0
LYD2_k127_4759235_2 Protein of unknown function (DUF1329) - - - 4.945e-194 615.0
LYD2_k127_4759235_3 Protein of unknown function (DUF1302) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005501 618.0
LYD2_k127_4759235_4 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 320.0
LYD2_k127_4759235_5 Epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009148 264.0
LYD2_k127_4759235_6 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000004311 205.0
LYD2_k127_4759235_7 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000007109 194.0
LYD2_k127_4759235_8 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000003637 204.0
LYD2_k127_4759235_9 PFAM Serine threonine-protein kinase-like domain K12132 - 2.7.11.1 0.00000000000000000000000000006511 128.0
LYD2_k127_4794270_0 Protein of unknown function (DUF3141) - - - 0.0 1030.0
LYD2_k127_4794270_1 PFAM phosphate acetyl butaryl transferase K00625 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 428.0
LYD2_k127_4794270_2 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 284.0
LYD2_k127_4794270_3 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000005423 213.0
LYD2_k127_4794270_4 Fatty acid hydroxylase superfamily - - - 0.0000000000000000000000000000000000000000000000000003059 190.0
LYD2_k127_479521_0 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 354.0
LYD2_k127_479521_1 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 304.0
LYD2_k127_479521_2 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000002106 231.0
LYD2_k127_479521_3 DinB family - - - 0.0000000000000000000000000000000000000000000000000000000000000002697 224.0
LYD2_k127_479521_5 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000001213 184.0
LYD2_k127_479521_6 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000002626 156.0
LYD2_k127_479521_7 alpha/beta hydrolase fold - - - 0.0000000000000000000001271 104.0
LYD2_k127_479521_8 alpha/beta hydrolase fold - - - 0.000000000000006312 75.0
LYD2_k127_481638_0 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 GO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564 3.6.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006477 471.0
LYD2_k127_481638_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 454.0
LYD2_k127_481638_2 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000001532 239.0
LYD2_k127_481638_3 HD domain K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000001843 202.0
LYD2_k127_481638_4 Prokaryotic cytochrome b561 K12262 - - 0.000000000000000000000000000000000000000000000000003131 188.0
LYD2_k127_481638_5 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000000000000000000000000000397 181.0
LYD2_k127_481638_6 DoxX family K15977 - - 0.000000000000000000000000000000000000000001872 162.0
LYD2_k127_481638_7 - - - - 0.0000000001607 66.0
LYD2_k127_481638_8 Peptidase, M20 - - - 0.0001499 45.0
LYD2_k127_481638_9 - - - - 0.0003695 46.0
LYD2_k127_4834345_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 2.408e-226 707.0
LYD2_k127_4834345_1 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 547.0
LYD2_k127_4834345_2 Mycolic acid cyclopropane synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005925 464.0
LYD2_k127_4834345_3 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000953 371.0
LYD2_k127_4834345_4 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008371 359.0
LYD2_k127_4834345_5 MBOAT, membrane-bound O-acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000007436 214.0
LYD2_k127_4834345_6 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000232 186.0
LYD2_k127_4834345_7 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000000000000000000000000001151 177.0
LYD2_k127_4834345_8 O-methyltransferase - - - 0.000000000006971 75.0
LYD2_k127_4868680_0 transporter - - - 0.0 1011.0
LYD2_k127_4868680_1 2-methylcitrate dehydratase K01720 - 4.2.1.79 6.14e-277 857.0
LYD2_k127_4868680_2 Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086 445.0
LYD2_k127_4868680_3 - - - - 0.00000000000000000000000000000000000000000005722 166.0
LYD2_k127_4868680_4 Belongs to the ompA family K03286 - - 0.000000000000000003523 87.0
LYD2_k127_4868680_5 OmpA-like transmembrane domain K03286 - - 0.00000000008827 71.0
LYD2_k127_4872009_0 Oxidoreductase K06969 - 2.1.1.191 1.803e-224 701.0
LYD2_k127_4872009_1 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 376.0
LYD2_k127_4872009_2 Aspartyl protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005168 250.0
LYD2_k127_4902208_0 Hydroxymethylglutaryl-CoA lyase K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006663 506.0
LYD2_k127_4902208_1 Peptidase family S51 K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 380.0
LYD2_k127_4902208_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000534 376.0
LYD2_k127_4902208_3 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 359.0
LYD2_k127_4902208_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000199 264.0
LYD2_k127_4902208_5 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases K03828 - - 0.0000000000000000000000000000000000000000000000000000000000000000821 237.0
LYD2_k127_4902208_6 Elongation factor P K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000008029 224.0
LYD2_k127_4930572_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.0 1025.0
LYD2_k127_4930572_1 receptor - - - 1.537e-261 829.0
LYD2_k127_4930572_2 Sulfotransferase domain - - - 1.945e-201 641.0
LYD2_k127_4930572_3 Sulfotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009417 585.0
LYD2_k127_4930572_4 Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 474.0
LYD2_k127_4930572_5 Sulfotransferase domain K01014 - 2.8.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 426.0
LYD2_k127_4930572_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 282.0
LYD2_k127_4930572_7 Prolyl 4-hydroxylase alpha subunit homologues. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005391 259.0
LYD2_k127_4930572_8 Putative adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003079 265.0
LYD2_k127_4930572_9 - - - - 0.0000000000000000000000000000000000004332 145.0
LYD2_k127_5041031_0 receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 421.0
LYD2_k127_5041031_1 Transcriptional regulator K07506 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 293.0
LYD2_k127_5041031_2 Protein of unknown function (DUF1223) - - - 0.00000000000000000000000000000000000000000000000000000000000004022 222.0
LYD2_k127_5043125_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 410.0
LYD2_k127_5043125_1 MTH538 TIR-like domain (DUF1863) K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008596 306.0
LYD2_k127_5043125_2 Thi4 family - - - 0.0000000000000000000000000000000183 126.0
LYD2_k127_504380_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0 1024.0
LYD2_k127_504380_1 Belongs to the glutamate synthase family - - - 7.933e-299 922.0
LYD2_k127_504380_10 Methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005504 314.0
LYD2_k127_504380_11 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 309.0
LYD2_k127_504380_12 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 289.0
LYD2_k127_504380_13 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 295.0
LYD2_k127_504380_14 His Kinase A (phosphoacceptor) domain K10715 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001676 296.0
LYD2_k127_504380_15 competence protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005542 277.0
LYD2_k127_504380_16 Enoyl-CoA hydratase/isomerase K13816 - - 0.0000000000000000000000000000000000000000000000000007297 194.0
LYD2_k127_504380_17 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000001895 153.0
LYD2_k127_504380_18 receptor - - - 0.000000000000000000000000000000000002044 140.0
LYD2_k127_504380_19 Transcriptional regulator K07506 - - 0.000000000000000000000000000006075 130.0
LYD2_k127_504380_2 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 8.198e-282 884.0
LYD2_k127_504380_20 Phosphopantetheine attachment site K02078 - - 0.000000009094 61.0
LYD2_k127_504380_3 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 576.0
LYD2_k127_504380_4 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009018 570.0
LYD2_k127_504380_5 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003662 479.0
LYD2_k127_504380_6 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 475.0
LYD2_k127_504380_7 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K13815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009846 476.0
LYD2_k127_504380_8 dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 441.0
LYD2_k127_504380_9 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 327.0
LYD2_k127_5096442_0 ABC-type sulfate transport system, periplasmic component K02048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 531.0
LYD2_k127_5096442_1 Part of the ABC transporter complex cysAWTP involved in sulfate thiosulfate import K02047 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 422.0
LYD2_k127_5096442_2 Pyridine nucleotide-disulfide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 421.0
LYD2_k127_5096442_3 ABC-type sulfate transport system permease component K02046 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000725 391.0
LYD2_k127_5096442_4 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.00000000000000000000000004885 109.0
LYD2_k127_5096442_5 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component K00380 - 1.8.1.2 0.0000009366 52.0
LYD2_k127_5097670_0 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005255 507.0
LYD2_k127_5097670_1 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 395.0
LYD2_k127_5097670_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 327.0
LYD2_k127_5097670_3 Peptidase family C25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 312.0
LYD2_k127_5097670_4 ABC transporter K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006371 261.0
LYD2_k127_5097670_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000001228 250.0
LYD2_k127_5097670_6 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000002256 235.0
LYD2_k127_5097670_8 COG NOG06399 non supervised orthologous group - - - 0.0000000000001119 80.0
LYD2_k127_5104321_0 Belongs to the D-alanine--D-alanine ligase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 604.0
LYD2_k127_5104321_1 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 589.0
LYD2_k127_5104321_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 428.0
LYD2_k127_5104321_3 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000002258 255.0
LYD2_k127_5104321_4 TIR domain - - - 0.0000000000000000000000000000001879 143.0
LYD2_k127_5104749_0 MBOAT, membrane-bound O-acyltransferase family - - - 4.149e-260 807.0
LYD2_k127_5104749_1 Involved in the TonB-independent uptake of proteins K03641 - - 4.166e-204 643.0
LYD2_k127_5104749_10 Biopolymer transport protein K03560 - - 0.0000000000000000000000000000000000000000000000000000003383 196.0
LYD2_k127_5104749_11 Acyl-CoA thioesterase K07107 - - 0.000000000000000000000000000000000000000000000007533 177.0
LYD2_k127_5104749_12 TIGRFAM RHS repeat-associated core domain - - - 0.0000000000000000000000000005623 126.0
LYD2_k127_5104749_13 - - - - 0.00000000000000000006352 97.0
LYD2_k127_5104749_14 - - - - 0.000003172 49.0
LYD2_k127_5104749_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 356.0
LYD2_k127_5104749_3 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 346.0
LYD2_k127_5104749_4 TolQ protein K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 337.0
LYD2_k127_5104749_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 299.0
LYD2_k127_5104749_6 DJ-1/PfpI family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007161 289.0
LYD2_k127_5104749_7 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000000000000000000001024 240.0
LYD2_k127_5104749_8 Membrane protein TolA K03646 - - 0.0000000000000000000000000000000000000000000000000000000000000000001201 240.0
LYD2_k127_5104749_9 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000166 230.0
LYD2_k127_5137267_0 Protein of unknown function, DUF255 - - - 1.879e-318 987.0
LYD2_k127_5137267_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 9.717e-292 903.0
LYD2_k127_5137267_2 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 395.0
LYD2_k127_5137267_3 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 323.0
LYD2_k127_5137267_4 membrane protein terc - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 294.0
LYD2_k127_5137267_5 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 295.0
LYD2_k127_5137267_6 TPM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003785 243.0
LYD2_k127_5137267_7 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.000000000000000000000000000000000000000000000000000000000006875 209.0
LYD2_k127_514905_0 Caspase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 599.0
LYD2_k127_514905_1 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 404.0
LYD2_k127_514905_2 phosphatase K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 389.0
LYD2_k127_514905_3 Autotransporter beta-domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003034 336.0
LYD2_k127_514905_4 Cytochrome c554 and c-prime - - - 0.0000184 51.0
LYD2_k127_5152319_0 Belongs to the GcvT family K00302 - 1.5.3.1 9.683e-290 918.0
LYD2_k127_5152319_1 sarcosine oxidase K00303 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 577.0
LYD2_k127_5152319_2 Amino acid permease K20265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000875 385.0
LYD2_k127_5152319_3 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.0000000000000000000000000000000000000001446 153.0
LYD2_k127_5152319_4 Belongs to the GcvT family K00315 - 1.5.8.4 0.0000000000000000000000000000000009691 130.0
LYD2_k127_5152319_5 Sarcosine oxidase, delta subunit family K00304 - 1.5.3.1 0.0000000000000000000000004659 106.0
LYD2_k127_5183597_0 Acyl-CoA dehydrogenase K00252 - 1.3.8.6 6.008e-232 720.0
LYD2_k127_5183597_1 MFS transporter K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004847 465.0
LYD2_k127_5183597_2 Belongs to the GST superfamily K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 320.0
LYD2_k127_5183597_3 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 309.0
LYD2_k127_5183597_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002701 278.0
LYD2_k127_5185313_0 protein conserved in bacteria - - - 7.991e-300 928.0
LYD2_k127_5185313_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 2.537e-200 632.0
LYD2_k127_5185313_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 581.0
LYD2_k127_5185313_3 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 505.0
LYD2_k127_5185313_4 abc transporter atp-binding protein K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 393.0
LYD2_k127_5185313_5 PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 325.0
LYD2_k127_5185313_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000035 262.0
LYD2_k127_5185313_7 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000000000000178 156.0
LYD2_k127_5215393_0 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 513.0
LYD2_k127_5215393_1 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00479 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 363.0
LYD2_k127_5215393_2 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001787 299.0
LYD2_k127_5242978_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 0.0 1112.0
LYD2_k127_5242978_1 Catalyzes the reversible formation of glyoxylate and succinate from isocitrate K01637 - 4.1.3.1 1.111e-249 776.0
LYD2_k127_5242978_2 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle K01638 - 2.3.3.9 5.239e-217 686.0
LYD2_k127_5242978_3 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004782 267.0
LYD2_k127_5242978_4 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.0000000000000000000000000000000000000000000000000000001097 204.0
LYD2_k127_5242978_5 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000001345 194.0
LYD2_k127_5275026_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000459 436.0
LYD2_k127_5275026_1 bacterial-type flagellum-dependent cell motility - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004143 347.0
LYD2_k127_5275026_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008502 333.0
LYD2_k127_5293538_0 Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair K03580 - - 0.0 1110.0
LYD2_k127_5293538_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 539.0
LYD2_k127_5293538_2 peptidase K07386 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 297.0
LYD2_k127_5293538_3 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000499 265.0
LYD2_k127_5293538_4 2OG-Fe(II) oxygenase superfamily K07394 - - 0.000000000000000000000000000000000000000000000000000000000003864 224.0
LYD2_k127_5293538_5 - - - - 0.00000000000000000000000000003677 126.0
LYD2_k127_5293538_6 peptidoglycan-binding protein, lysm - - - 0.0000000000000000000000000001049 118.0
LYD2_k127_5293538_7 - - - - 0.0000000000000000006516 93.0
LYD2_k127_5293897_0 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 441.0
LYD2_k127_5293897_1 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000004288 198.0
LYD2_k127_5346173_0 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 5.929e-215 676.0
LYD2_k127_5346173_1 NHL repeat containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001018 283.0
LYD2_k127_5346173_2 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000003875 191.0
LYD2_k127_5346173_3 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.00000000000000000000004013 99.0
LYD2_k127_5360049_0 Glycosyl transferase K20444 - - 0.0 1733.0
LYD2_k127_5360049_1 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 8.301e-274 876.0
LYD2_k127_5360049_2 Protein tyrosine kinase - - - 1.875e-263 836.0
LYD2_k127_5360049_3 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.399e-240 749.0
LYD2_k127_5360049_4 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001211 254.0
LYD2_k127_5360049_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000001588 169.0
LYD2_k127_5361265_0 PFAM peptidase M61 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007357 501.0
LYD2_k127_5361265_1 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 380.0
LYD2_k127_5361265_2 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 336.0
LYD2_k127_5361265_3 NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005645 337.0
LYD2_k127_5361265_4 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004138 273.0
LYD2_k127_5361265_5 helix_turn_helix, mercury resistance K19591 - - 0.000000000000000000000000000000000000000000000000000000000000000000001325 238.0
LYD2_k127_5361265_8 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000001493 121.0
LYD2_k127_5361265_9 - - - - 0.0000000001367 70.0
LYD2_k127_5365859_0 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 572.0
LYD2_k127_5365859_1 permease K09696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 544.0
LYD2_k127_5365859_10 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000005671 241.0
LYD2_k127_5365859_11 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000004194 155.0
LYD2_k127_5365859_12 Helix-turn-helix domain K07729 - - 0.000000000000000000000000007485 111.0
LYD2_k127_5365859_13 - - - - 0.00000000000000000000000005671 112.0
LYD2_k127_5365859_2 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000652 522.0
LYD2_k127_5365859_3 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000856 498.0
LYD2_k127_5365859_4 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 450.0
LYD2_k127_5365859_5 Preprotein translocase subunit TatD K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 426.0
LYD2_k127_5365859_6 Oxidoreductase FAD-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007085 415.0
LYD2_k127_5365859_7 abc transporter atp-binding protein K09697 - 3.6.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 424.0
LYD2_k127_5365859_8 Helicase K03579 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 390.0
LYD2_k127_5365859_9 Protein of unknown function (DUF2167) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 366.0
LYD2_k127_5370714_0 Histidine kinase - - - 4.014e-319 988.0
LYD2_k127_5370714_1 two-component system sensor protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 620.0
LYD2_k127_5370714_2 Class II aldolase - - - 0.00000000000000000000000000000000000000002141 153.0
LYD2_k127_5370714_3 domain, Protein - - - 0.0000000000000000004326 101.0
LYD2_k127_5390241_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1405.0
LYD2_k127_5390241_1 AAA domain K02450 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 604.0
LYD2_k127_5390241_2 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000001841 216.0
LYD2_k127_5390241_3 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.0000000000000000000000000000000000000000000000007166 178.0
LYD2_k127_5390241_4 domain, Protein - - - 0.0000000000000000000000000000000000000125 162.0
LYD2_k127_5390241_5 40-residue YVTN family beta-propeller repeat - - - 0.000000000000001042 89.0
LYD2_k127_5390800_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 7.891e-212 669.0
LYD2_k127_5390800_1 permease K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009106 502.0
LYD2_k127_5390800_2 overlaps another CDS with the same product name K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005545 505.0
LYD2_k127_5390800_3 Tyrosine recombinase xerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 464.0
LYD2_k127_5390800_4 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005132 465.0
LYD2_k127_5390800_5 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 396.0
LYD2_k127_5390800_6 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006571 300.0
LYD2_k127_5390800_7 dna polymerase III K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000002696 241.0
LYD2_k127_5390800_8 RDD family - - - 0.000000000000000000000000000000000000000000000000004594 184.0
LYD2_k127_540210_0 Amidohydrolase family K06015 - 3.5.1.81 9.759e-270 841.0
LYD2_k127_540210_1 acid dehydrogenase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 578.0
LYD2_k127_540210_2 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 441.0
LYD2_k127_540210_3 peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000003363 242.0
LYD2_k127_540210_4 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - 0.00000000000000000000000000000000000000000000000000000000006996 210.0
LYD2_k127_540210_5 - - - - 0.000000000000000000000000157 113.0
LYD2_k127_540210_6 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.00000000000000000001287 98.0
LYD2_k127_5459361_0 Amidase K01426 - 3.5.1.4 1.584e-270 844.0
LYD2_k127_5459361_1 desaturase K00507 - 1.14.19.1 1.528e-206 648.0
LYD2_k127_5459361_2 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 319.0
LYD2_k127_5459361_3 Dolichol-phosphate mannosyltransferase K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000002152 224.0
LYD2_k127_5459361_4 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000757 147.0
LYD2_k127_5459361_5 Belongs to the bacterial ribosomal protein bL33 family K02913 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000003199 110.0
LYD2_k127_5476061_0 Tricorn protease homolog K08676 - - 0.0 1182.0
LYD2_k127_5476061_1 Peptidase family M3 K01284 GO:0003674,GO:0003824,GO:0004180,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.15.5 5.601e-268 845.0
LYD2_k127_5476061_2 glutamate--cysteine ligase K01919 - 6.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 352.0
LYD2_k127_5476061_3 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000553 286.0
LYD2_k127_5476061_4 Diguanylate cyclase K08968 - 1.8.4.14 0.000000000000000000000000000000000000000000000000000000000000000000000000008511 261.0
LYD2_k127_5476061_5 Protein of unknown function (DUF2785) - - - 0.0000000000000000000000000000000000000000000000000000000000000003858 238.0
LYD2_k127_5476061_6 - - - - 0.000000000000000000000000000000000000001151 150.0
LYD2_k127_5476061_7 regulator - - - 0.00000000000000000000000000000007694 134.0
LYD2_k127_5494_0 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 528.0
LYD2_k127_5494_1 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 413.0
LYD2_k127_5494_2 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000001675 194.0
LYD2_k127_5494_3 cytochrome - - - 0.0000000000000000000000000000000000000001393 161.0
LYD2_k127_5494_4 AraC-like ligand binding domain - - - 0.000000000000000000000000000000000000000173 153.0
LYD2_k127_5494_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000009992 164.0
LYD2_k127_5494_6 membrane - - - 0.00000002491 55.0
LYD2_k127_5494_7 Listeria-Bacteroides repeat domain (List_Bact_rpt) - - - 0.0000002054 64.0
LYD2_k127_5495079_0 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 GO:0000166,GO:0003674,GO:0003824,GO:0004672,GO:0004721,GO:0005488,GO:0005524,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008772,GO:0009987,GO:0016208,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.11.5 1.176e-253 794.0
LYD2_k127_5495079_1 Domain of unknown function (DUF802) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 556.0
LYD2_k127_5495079_2 Flagellar motor protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 530.0
LYD2_k127_5495079_3 Helicase K03579 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 516.0
LYD2_k127_5495079_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 381.0
LYD2_k127_5495079_5 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 362.0
LYD2_k127_5495079_6 Belongs to the pseudouridine synthase RsuA family K06181 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000001949 262.0
LYD2_k127_5495079_7 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000008632 183.0
LYD2_k127_5505602_0 General secretion pathway protein K02453 - - 7.317e-251 799.0
LYD2_k127_5505602_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 448.0
LYD2_k127_5505602_2 Type II secretion system protein K K02460 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 380.0
LYD2_k127_5505602_3 General secretion pathway protein K02461 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004338 372.0
LYD2_k127_5505602_4 General secretion pathway protein K02459 - - 0.00000000000000000000000000000000000000000000000000000000000000000001482 251.0
LYD2_k127_5505602_5 General secretion pathway protein K02462 - - 0.0000000000000000000000000000000000000000000000000002825 192.0
LYD2_k127_5505602_6 COG4970 Tfp pilus assembly protein FimT K02457 - - 0.0000000000000000000000000000000000000000000002917 168.0
LYD2_k127_5505602_7 Prokaryotic N-terminal methylation motif K02458 - - 0.00000000000000000000000000000000002206 147.0
LYD2_k127_5505602_8 General secretion pathway protein K02463 - - 0.00000000000000000000000003366 119.0
LYD2_k127_5505602_9 - - - - 0.00000000002333 70.0
LYD2_k127_5585697_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 513.0
LYD2_k127_5585697_1 Belongs to the ParA family K03609 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 447.0
LYD2_k127_5585697_2 regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007074 373.0
LYD2_k127_5585697_3 acetyltransferase K06977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008997 306.0
LYD2_k127_5585697_4 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001532 280.0
LYD2_k127_5585697_5 - - - - 0.0000000000000000000000000000000004661 132.0
LYD2_k127_5585697_6 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.00000000000000000000000000004946 120.0
LYD2_k127_5614343_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000343 554.0
LYD2_k127_5614343_1 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 535.0
LYD2_k127_5614343_2 component I K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 400.0
LYD2_k127_5614343_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 392.0
LYD2_k127_5614343_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 297.0
LYD2_k127_5614343_5 the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 309.0
LYD2_k127_5614343_6 Pkd domain containing protein K12567 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000004267 212.0
LYD2_k127_5614343_7 Pilus assembly protein PilZ K02676 - - 0.0000000000000000000000000000000000000000000000000001774 188.0
LYD2_k127_5635814_0 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 525.0
LYD2_k127_5635814_1 cAMP biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 451.0
LYD2_k127_5635814_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000267 278.0
LYD2_k127_5635814_3 cAMP biosynthetic process - - - 0.00000000000008086 74.0
LYD2_k127_5651558_0 carbohydrate binding - - - 0.0 2470.0
LYD2_k127_5670839_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 1.609e-220 695.0
LYD2_k127_5670839_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001666 280.0
LYD2_k127_5670839_2 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000001232 259.0
LYD2_k127_5670839_3 Fungalysin metallopeptidase (M36) - - - 0.000000000000000000000000000000000000006008 169.0
LYD2_k127_5712471_0 Cys/Met metabolism PLP-dependent enzyme - - - 4.611e-199 625.0
LYD2_k127_5712471_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 455.0
LYD2_k127_5712471_2 CpeT/CpcT family (DUF1001) - - - 0.0000000000006518 79.0
LYD2_k127_5712471_3 VIT family - - - 0.00000004551 55.0
LYD2_k127_5720140_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1189.0
LYD2_k127_5720140_1 COG0477 Permeases of the major facilitator superfamily - - - 4.502e-262 817.0
LYD2_k127_5720140_2 Carboxypeptidase - - - 1.269e-260 817.0
LYD2_k127_5720140_3 DNA repair photolyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 384.0
LYD2_k127_5720140_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000002665 61.0
LYD2_k127_5726008_0 multicopper - - - 1.615e-251 790.0
LYD2_k127_5726008_1 Glucose dehydrogenase - - - 2.498e-237 750.0
LYD2_k127_5726008_2 cation diffusion facilitator family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 427.0
LYD2_k127_5726008_3 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 375.0
LYD2_k127_5726008_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 341.0
LYD2_k127_5726008_5 LytTr DNA-binding domain K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002992 258.0
LYD2_k127_5726008_6 Universal stress protein family - - - 0.00000000000000000000000000000000000000000000007332 173.0
LYD2_k127_5726008_7 Outer membrane lipoprotein K07285 - - 0.00000000000000000000000000000000001201 141.0
LYD2_k127_5726008_8 Copper resistance K07233 - - 0.000000000000000000000000000001054 128.0
LYD2_k127_5726008_9 lactoylglutathione lyase activity - - - 0.0000000000000000005258 92.0
LYD2_k127_5728997_0 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit - - - 9.239e-281 877.0
LYD2_k127_5728997_1 Recombination factor protein RarA K07478 - - 3.117e-244 760.0
LYD2_k127_5728997_10 copG family - - - 0.0000000001061 62.0
LYD2_k127_5728997_11 transcriptional regulator - - - 0.00001954 53.0
LYD2_k127_5728997_2 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K12141 - - 4.05e-243 757.0
LYD2_k127_5728997_3 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 1.03e-222 695.0
LYD2_k127_5728997_4 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 580.0
LYD2_k127_5728997_5 Major Facilitator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 579.0
LYD2_k127_5728997_6 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 400.0
LYD2_k127_5728997_7 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 319.0
LYD2_k127_5728997_8 Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity K01118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000654 248.0
LYD2_k127_5728997_9 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000001595 233.0
LYD2_k127_5734805_0 Belongs to the aldehyde dehydrogenase family K00154 - 1.2.1.68 2.513e-213 673.0
LYD2_k127_5734805_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 562.0
LYD2_k127_5734805_10 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K12136 - - 0.000000000001872 67.0
LYD2_k127_5734805_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 517.0
LYD2_k127_5734805_3 chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006757 448.0
LYD2_k127_5734805_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006249 402.0
LYD2_k127_5734805_5 carbonic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001891 303.0
LYD2_k127_5734805_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002188 287.0
LYD2_k127_5734805_7 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000225 267.0
LYD2_k127_5734805_8 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000002068 166.0
LYD2_k127_5734805_9 Fe-S-cluster oxidoreductase K06940 - - 0.0000000000000000000000000000007185 127.0
LYD2_k127_5750551_0 Hep Hag repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006079 580.0
LYD2_k127_5750551_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 551.0
LYD2_k127_5750551_2 asparaginase K01444 - 3.5.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004938 512.0
LYD2_k127_5750551_3 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 350.0
LYD2_k127_5750551_4 Participates in the control of copper homeostasis K06201 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 329.0
LYD2_k127_5750551_5 COG2755 Lysophospholipase L1 and related esterases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000158 261.0
LYD2_k127_5750551_6 Belongs to the UPF0502 family K09915 - - 0.00000000000000000000000000000000000000000000000000000000006225 213.0
LYD2_k127_5750551_7 sigma factor activity - - - 0.000000000008711 66.0
LYD2_k127_5753353_0 stress-induced protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008173 443.0
LYD2_k127_5753353_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 406.0
LYD2_k127_5753353_2 Glycosyl transferase family 41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006792 415.0
LYD2_k127_5753353_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 356.0
LYD2_k127_5753353_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008486 275.0
LYD2_k127_5756057_0 Amidohydrolase family - - - 0.0 1013.0
LYD2_k127_5756057_1 Amidohydrolase family K06015 - 3.5.1.81 1.948e-258 827.0
LYD2_k127_5756057_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 460.0
LYD2_k127_5756057_3 Formate nitrite K02598,K06212 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 422.0
LYD2_k127_5756057_4 PFAM Peptidase M11 gametolysin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 409.0
LYD2_k127_5756057_5 Peptidase dimerisation domain K01439,K13049 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 383.0
LYD2_k127_5756057_6 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006054 247.0
LYD2_k127_5756057_7 NUDIX hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000002869 211.0
LYD2_k127_5756057_8 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000007339 72.0
LYD2_k127_5760052_0 Transglutaminase/protease-like homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 610.0
LYD2_k127_5760052_1 Acyl-CoA thioesterase K10805 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 432.0
LYD2_k127_5760052_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 2.3.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 380.0
LYD2_k127_5760052_3 haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 370.0
LYD2_k127_5760052_4 Protein of unknown function (DUF3224) - - - 0.0000000000000000000000000000000000000000000000001794 181.0
LYD2_k127_5760052_5 - - - - 0.00000000000000000000000000000000000000000002732 165.0
LYD2_k127_5760052_6 Pfam:UPF0118 - - - 0.00000002482 61.0
LYD2_k127_5763775_0 TonB dependent receptor K02014 - - 0.0 1050.0
LYD2_k127_5763775_1 Belongs to the IlvD Edd family K01690 - 4.2.1.12 1.441e-266 833.0
LYD2_k127_5763775_2 Transporter - - - 1.653e-208 657.0
LYD2_k127_5763775_3 lacI family K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 535.0
LYD2_k127_5763775_4 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 385.0
LYD2_k127_5763775_5 Aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002516 276.0
LYD2_k127_5763775_6 6-phosphogluconolactonase K01057 - 3.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000004577 239.0
LYD2_k127_5767526_0 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005118 368.0
LYD2_k127_5767526_1 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 353.0
LYD2_k127_5767526_2 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000008127 228.0
LYD2_k127_5767526_3 protein affecting Mg2 Co2 transport K06195 - - 0.00000000000000000000000000009116 117.0
LYD2_k127_5780697_0 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 318.0
LYD2_k127_5780697_1 Rhomboid family K19225 - 3.4.21.105 0.0000000000000000000000000000000000000001001 168.0
LYD2_k127_5780697_2 TonB C terminal K03832 - - 0.000000000000000000000000001634 113.0
LYD2_k127_5780697_3 guanyl-nucleotide exchange factor activity K20276,K21449 - - 0.000000000000000000000004634 120.0
LYD2_k127_5781296_0 Fumarate reductase flavoprotein C-term - - - 4.831e-254 795.0
LYD2_k127_5781296_1 ABC transporter substrate-binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 453.0
LYD2_k127_5781296_10 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002057 250.0
LYD2_k127_5781296_11 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000003176 237.0
LYD2_k127_5781296_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000006325 216.0
LYD2_k127_5781296_13 Protein of unknown function (DUF3455) - - - 0.0000000000000000000000000000000000000000000000008505 181.0
LYD2_k127_5781296_14 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000004266 179.0
LYD2_k127_5781296_15 PFAM NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000003097 173.0
LYD2_k127_5781296_16 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000513 166.0
LYD2_k127_5781296_17 helix-turn-helix domain protein - - - 0.0000000000000000000000000000000000000411 158.0
LYD2_k127_5781296_18 Leucine-rich repeat (LRR) protein - - - 0.000000000000000000000000000000000005305 149.0
LYD2_k127_5781296_19 Fumarate reductase subunit D - - - 0.00000000000000000000133 100.0
LYD2_k127_5781296_2 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 413.0
LYD2_k127_5781296_20 Fumarate reductase subunit C - - - 0.000000000000000000003002 106.0
LYD2_k127_5781296_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004899 392.0
LYD2_k127_5781296_4 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008243 365.0
LYD2_k127_5781296_5 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 362.0
LYD2_k127_5781296_6 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006735 351.0
LYD2_k127_5781296_7 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 361.0
LYD2_k127_5781296_8 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 330.0
LYD2_k127_5781296_9 glutathione transferase activity K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000389 249.0
LYD2_k127_5829404_0 Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 445.0
LYD2_k127_5829404_1 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 387.0
LYD2_k127_5829404_2 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007801 345.0
LYD2_k127_5829404_3 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 321.0
LYD2_k127_5829404_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000001965 220.0
LYD2_k127_5829404_5 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000001268 182.0
LYD2_k127_5829404_6 MFS transporter K11381 - 1.2.4.4 0.00000000000000000000001037 100.0
LYD2_k127_5829404_7 WD40 domain protein beta Propeller - - - 0.00000000000002487 87.0
LYD2_k127_5831592_0 Peptidase family M20/M25/M40 K02083 - 3.5.3.9 2.261e-228 726.0
LYD2_k127_5831592_1 Peptidase dimerisation domain - - - 3.886e-196 621.0
LYD2_k127_5831592_2 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 588.0
LYD2_k127_5831592_3 chitin deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 554.0
LYD2_k127_5831592_4 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.00000000000000000000000000000000000000000000000000000247 194.0
LYD2_k127_5831592_5 Putative DNA-binding domain - - - 0.0000000000000000000000006451 109.0
LYD2_k127_5846123_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0 1116.0
LYD2_k127_5846123_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 5.345e-244 759.0
LYD2_k127_5846123_2 Small-conductance mechanosensitive channel - - - 3.506e-209 697.0
LYD2_k127_5846123_3 Pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 599.0
LYD2_k127_5846123_4 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004264 281.0
LYD2_k127_5846123_5 assembly protein (PilN) K02663 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001811 257.0
LYD2_k127_5846123_6 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000001057 235.0
LYD2_k127_5846123_7 pilus assembly protein pilp K02665 - - 0.000000000000000000000000000000000000000000000000000000164 200.0
LYD2_k127_5846123_8 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000000000000001906 151.0
LYD2_k127_5879265_0 Putative esterase - - - 5.734e-295 938.0
LYD2_k127_5879265_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 3.181e-227 738.0
LYD2_k127_5879265_2 LacI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 512.0
LYD2_k127_5879265_3 Sortilin, neurotensin receptor 3, - - - 0.0000000000000000000000000000000004672 143.0
LYD2_k127_5887275_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 506.0
LYD2_k127_5887275_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 505.0
LYD2_k127_5887275_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007523 368.0
LYD2_k127_5887275_3 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000131 257.0
LYD2_k127_5888517_0 Zn-dependent protease with chaperone function K03799,K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 404.0
LYD2_k127_5888517_1 Redoxin K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000006943 249.0
LYD2_k127_5888517_2 DNA glycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001123 240.0
LYD2_k127_5888517_3 - - - - 0.0000000000000000000000000000000000000000000000000001834 197.0
LYD2_k127_5888517_4 O-methyltransferase - - - 0.0000000000000000000000000000000000000000000000004535 184.0
LYD2_k127_5888517_5 - - - - 0.000000000000000000000000000000002645 140.0
LYD2_k127_5888517_6 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000000000007735 104.0
LYD2_k127_5888517_7 Peptidase family M1 domain - - - 0.00000000001837 64.0
LYD2_k127_5898766_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1217.0
LYD2_k127_5898766_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1076.0
LYD2_k127_5898766_10 Abc transporter K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007949 354.0
LYD2_k127_5898766_11 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 358.0
LYD2_k127_5898766_12 Poly(R)-hydroxyalkanoic acid synthase subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 335.0
LYD2_k127_5898766_13 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005923 258.0
LYD2_k127_5898766_14 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002548 244.0
LYD2_k127_5898766_15 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005816 254.0
LYD2_k127_5898766_16 copper ion homeostasis K07152,K12818 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000002785 226.0
LYD2_k127_5898766_17 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000006874 192.0
LYD2_k127_5898766_18 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000007431 194.0
LYD2_k127_5898766_19 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000000000000000000001575 178.0
LYD2_k127_5898766_2 alpha/beta hydrolase fold K03821 - - 1.605e-197 620.0
LYD2_k127_5898766_20 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000003745 161.0
LYD2_k127_5898766_3 Sigma-70 region 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 538.0
LYD2_k127_5898766_4 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 510.0
LYD2_k127_5898766_5 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007875 511.0
LYD2_k127_5898766_6 Binding-protein-dependent transport system inner membrane component K02050,K15552,K15554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 402.0
LYD2_k127_5898766_7 reductase K19265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 392.0
LYD2_k127_5898766_8 response regulator K02483,K07661,K18073 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 372.0
LYD2_k127_5898766_9 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 376.0
LYD2_k127_5908318_0 ankyrin repeat K06867 - - 1.218e-316 1005.0
LYD2_k127_5908318_1 peptidase K01354 - 3.4.21.83 3.832e-306 951.0
LYD2_k127_5908318_2 Glutathione synthase ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 4.311e-295 908.0
LYD2_k127_5908318_3 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K11745,K11747 - - 2.264e-237 748.0
LYD2_k127_5908318_4 FR47-like protein - - - 0.000000000000000000000000000000000000000000000000005524 186.0
LYD2_k127_5927738_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 3.513e-244 758.0
LYD2_k127_5927738_1 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.000000000002206 71.0
LYD2_k127_5988899_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 5.476e-223 696.0
LYD2_k127_5988899_1 Transglutaminase/protease-like homologues K22452 - 2.3.2.13 2.808e-196 648.0
LYD2_k127_5988899_10 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000008844 237.0
LYD2_k127_5988899_11 Outer membrane lipoprotein K07285 - - 0.000000000000000000000000000000000000000000000000000000000000001611 223.0
LYD2_k127_5988899_12 component I K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000009503 231.0
LYD2_k127_5988899_13 Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000000000000000000000000001328 199.0
LYD2_k127_5988899_14 ACR protein K07040 - - 0.000000000000000000000000000000000000000000000000000002011 196.0
LYD2_k127_5988899_15 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000000000002395 181.0
LYD2_k127_5988899_16 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000000000000000003839 148.0
LYD2_k127_5988899_17 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000001506 105.0
LYD2_k127_5988899_18 Domain of unknown function (DUF1737) - - - 0.00000000000000000000009232 101.0
LYD2_k127_5988899_19 - - - - 0.0000000000000006815 84.0
LYD2_k127_5988899_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 543.0
LYD2_k127_5988899_3 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 480.0
LYD2_k127_5988899_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006753 481.0
LYD2_k127_5988899_5 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 454.0
LYD2_k127_5988899_6 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 396.0
LYD2_k127_5988899_7 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008845 371.0
LYD2_k127_5988899_8 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 355.0
LYD2_k127_5988899_9 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 326.0
LYD2_k127_5995707_0 Belongs to the aldehyde dehydrogenase family K00138 - - 7.4e-323 990.0
LYD2_k127_5995707_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 1.264e-293 904.0
LYD2_k127_5995707_10 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000003226 162.0
LYD2_k127_5995707_2 L-lactate permease K00427,K03303 - - 2.831e-287 894.0
LYD2_k127_5995707_3 Bacterial regulatory protein, Fis family K21405 - - 3.923e-256 804.0
LYD2_k127_5995707_4 FAD FMN-containing dehydrogenases - - - 5.498e-244 762.0
LYD2_k127_5995707_5 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 502.0
LYD2_k127_5995707_6 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 478.0
LYD2_k127_5995707_7 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 491.0
LYD2_k127_5995707_8 carboxylase small K01602 - 4.1.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000001721 257.0
LYD2_k127_5995707_9 Protein of unknown function (DUF779) K09959 - - 0.0000000000000000000000000000000000000000000000000000000000001027 215.0
LYD2_k127_6003826_0 GTP-binding protein TypA K06207 - - 7.01e-289 897.0
LYD2_k127_6003826_1 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 3.408e-239 745.0
LYD2_k127_6003826_10 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000003705 254.0
LYD2_k127_6003826_11 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003078 250.0
LYD2_k127_6003826_12 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000002509 238.0
LYD2_k127_6003826_13 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000005094 224.0
LYD2_k127_6003826_14 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000372 206.0
LYD2_k127_6003826_15 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000002184 192.0
LYD2_k127_6003826_16 ECF sigma factor - - - 0.00000000000000000000000000000001502 134.0
LYD2_k127_6003826_17 Transglycosylase associated protein - - - 0.00000000000000000000000004317 111.0
LYD2_k127_6003826_18 Hemerythrin HHE cation binding domain - - - 0.0000000000000004023 85.0
LYD2_k127_6003826_19 alginic acid biosynthetic process K09483 - 4.2.1.118 0.00000001898 68.0
LYD2_k127_6003826_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 1.052e-210 662.0
LYD2_k127_6003826_3 Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia K01426 - 3.5.1.4 4.031e-203 645.0
LYD2_k127_6003826_4 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 4.358e-198 619.0
LYD2_k127_6003826_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007254 599.0
LYD2_k127_6003826_6 aminotransferase K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 597.0
LYD2_k127_6003826_7 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007348 548.0
LYD2_k127_6003826_8 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 445.0
LYD2_k127_6003826_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 376.0
LYD2_k127_6007888_0 Major facilitator superfamily K08151 - - 1.903e-194 617.0
LYD2_k127_6007888_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 293.0
LYD2_k127_6007888_2 Disulphide bond corrector protein DsbC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001833 271.0
LYD2_k127_6007888_3 Monoamine oxidase K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000284 256.0
LYD2_k127_6007888_4 GTP cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000001285 106.0
LYD2_k127_6007888_5 - - - - 0.0000000000000000000000001438 107.0
LYD2_k127_6112105_0 AcrB/AcrD/AcrF family - - - 0.0 1661.0
LYD2_k127_6112105_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 627.0
LYD2_k127_6112105_2 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000753 497.0
LYD2_k127_6112105_3 Protein of unknown function (DUF692) K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 421.0
LYD2_k127_6112105_4 phosphate-selective porin K07221 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 385.0
LYD2_k127_6112105_5 Putative DNA-binding domain K09929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 298.0
LYD2_k127_6112105_6 - K01179 - 3.2.1.4 0.000000000000000000002606 98.0
LYD2_k127_6121466_0 Protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003266 461.0
LYD2_k127_6121466_1 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 392.0
LYD2_k127_6121466_2 Domain of unknown function (DUF4870) K09940 - - 0.000000000000000000000000000000000000000007532 161.0
LYD2_k127_6121466_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000001549 100.0
LYD2_k127_6132946_0 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 7.175e-264 825.0
LYD2_k127_6132946_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.591e-242 754.0
LYD2_k127_6132946_2 abc transporter atp-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006428 480.0
LYD2_k127_6132946_3 abc transporter atp-binding protein K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 450.0
LYD2_k127_6132946_4 - K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 330.0
LYD2_k127_6132946_6 GntR family transcriptional regulator K07979 - - 0.0000000000000000000000000000000000000000000000000000000000001996 213.0
LYD2_k127_6159079_0 glutamate dehydrogenase K15371 - 1.4.1.2 0.0 2304.0
LYD2_k127_6159079_1 acyl-CoA dehydrogenase - - - 2.421e-213 666.0
LYD2_k127_6180461_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1332.0
LYD2_k127_6180461_1 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 468.0
LYD2_k127_6180461_2 DNA processing protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 284.0
LYD2_k127_6180461_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001298 271.0
LYD2_k127_6226917_0 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 349.0
LYD2_k127_6226917_1 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 346.0
LYD2_k127_6226917_2 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 309.0
LYD2_k127_6226917_3 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001415 299.0
LYD2_k127_6226917_4 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001865 287.0
LYD2_k127_6226917_5 - - - - 0.00000000000000000004026 100.0
LYD2_k127_6241343_0 Peptidase M16 - - - 0.0 1426.0
LYD2_k127_6241343_1 serine-type peptidase activity - - - 6.124e-262 824.0
LYD2_k127_6241343_2 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 4.47e-228 724.0
LYD2_k127_6241343_3 3-beta hydroxysteroid dehydrogenase K22320 - 1.1.1.412 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 445.0
LYD2_k127_6241343_4 pseudouridylate synthase K06175 - 5.4.99.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 332.0
LYD2_k127_6241343_5 Sterol-binding protein K03690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000127 284.0
LYD2_k127_6241343_6 Nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004393 249.0
LYD2_k127_6241343_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000356 252.0
LYD2_k127_6241343_8 Domain of unknown function (DUF4156) - - - 0.00000000000000000000000000000000000000000000002301 174.0
LYD2_k127_6241343_9 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000004305 128.0
LYD2_k127_6262615_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1580.0
LYD2_k127_6262615_1 Reductase C-terminal K00529 - 1.18.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 578.0
LYD2_k127_6262615_2 - - - - 0.000001771 49.0
LYD2_k127_632329_0 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 471.0
LYD2_k127_632329_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004973 358.0
LYD2_k127_632329_2 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000001713 267.0
LYD2_k127_632329_3 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000003087 254.0
LYD2_k127_632329_4 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006846 251.0
LYD2_k127_632329_5 Rhodanese-related sulfurtransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000006477 235.0
LYD2_k127_632329_6 - - - - 0.0000000000000000000000000000000000000000000000000009574 193.0
LYD2_k127_632329_7 thioesterase - - - 0.0000000000000000000000000000000000000000000000002077 195.0
LYD2_k127_632329_8 - - - - 0.00000000000000000000000000000000000007049 151.0
LYD2_k127_632329_9 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000493 121.0
LYD2_k127_6336372_0 efflux transmembrane transporter activity - - - 3.647e-207 672.0
LYD2_k127_6336372_1 efflux transmembrane transporter activity - - - 3.276e-195 638.0
LYD2_k127_6336372_2 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006322 552.0
LYD2_k127_6336372_3 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 372.0
LYD2_k127_6336372_4 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 341.0
LYD2_k127_6336372_5 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000246 210.0
LYD2_k127_635533_0 COG2217 Cation transport ATPase K01533 - 3.6.3.4 7.804e-276 867.0
LYD2_k127_635533_1 Phosphate acetyl/butaryl transferase K00625,K00634 - 2.3.1.19,2.3.1.8 2.547e-212 669.0
LYD2_k127_635533_2 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 299.0
LYD2_k127_635533_3 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000000000000000000000000000000000000002422 239.0
LYD2_k127_635533_4 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.00000000000000000000000000000000000000000000000000002567 197.0
LYD2_k127_635533_5 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000001205 187.0
LYD2_k127_635533_6 Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system K02045 - 3.6.3.25 0.0000000000000000000000000000000000007718 139.0
LYD2_k127_635533_7 Cytochrome oxidase maturation protein - - - 0.000000000000007939 81.0
LYD2_k127_640416_0 Belongs to the GcvT family K00315 - 1.5.8.4 4.283e-245 771.0
LYD2_k127_640416_1 COG2202 FOG PAS PAC domain K21025 - - 2.445e-242 766.0
LYD2_k127_640416_10 Beta-eliminating lyase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004855 323.0
LYD2_k127_640416_11 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002015 297.0
LYD2_k127_640416_12 Catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate K22292 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008967,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.1.3.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000001641 276.0
LYD2_k127_640416_13 ergosterol biosynthetic process K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000003838 256.0
LYD2_k127_640416_2 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline K12960 - 3.5.4.28,3.5.4.31 6.146e-235 734.0
LYD2_k127_640416_3 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 476.0
LYD2_k127_640416_4 lysine 2,3-aminomutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 473.0
LYD2_k127_640416_5 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 452.0
LYD2_k127_640416_6 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 386.0
LYD2_k127_640416_7 COGs COG5616 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 381.0
LYD2_k127_640416_8 Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 362.0
LYD2_k127_640416_9 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 319.0
LYD2_k127_642759_0 ABC transporter K06147 - - 5.733e-281 873.0
LYD2_k127_642759_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 2.052e-280 869.0
LYD2_k127_642759_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008288 277.0
LYD2_k127_642759_11 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001162 280.0
LYD2_k127_642759_12 Uncharacterized protein family UPF0029 - - - 0.000000000000000000000000000000000000000000000000000000000000000358 226.0
LYD2_k127_642759_13 CYTH domain protein K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000131 233.0
LYD2_k127_642759_14 Pkd domain containing protein K12567 - 2.7.11.1 0.00000000000000000000000000000000000003838 165.0
LYD2_k127_642759_15 ECF sigma factor - - - 0.0000000000000000000000000000000000000892 149.0
LYD2_k127_642759_16 Cold shock protein domain - - - 0.0000000000000000000000000000001363 124.0
LYD2_k127_642759_17 - - - - 0.0000000000000000000000007599 117.0
LYD2_k127_642759_18 - - - - 0.000000000000001219 89.0
LYD2_k127_642759_2 belongs to the aldehyde dehydrogenase family - - - 1.165e-225 744.0
LYD2_k127_642759_3 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 569.0
LYD2_k127_642759_4 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 496.0
LYD2_k127_642759_5 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 444.0
LYD2_k127_642759_6 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 447.0
LYD2_k127_642759_7 MBOAT, membrane-bound O-acyltransferase family K19294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 400.0
LYD2_k127_642759_8 Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine K19696 - 2.4.2.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 356.0
LYD2_k127_642759_9 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 306.0
LYD2_k127_650027_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 587.0
LYD2_k127_650027_1 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 587.0
LYD2_k127_650027_2 Major facilitator superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 572.0
LYD2_k127_650027_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 483.0
LYD2_k127_650027_4 DNA-(Apurinic or apyrimidinic site) lyase K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005572 458.0
LYD2_k127_650027_5 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 298.0
LYD2_k127_650027_6 - - - - 0.00000000000001539 78.0
LYD2_k127_655848_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000879 498.0
LYD2_k127_655848_1 Elongation factor P--(R)-beta-lysine ligase K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 486.0
LYD2_k127_655848_2 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005294 402.0
LYD2_k127_655848_3 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009903 351.0
LYD2_k127_655848_4 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates K01141 - 3.1.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000278 252.0
LYD2_k127_655848_5 Predicted membrane protein (DUF2127) - - - 0.00000000000000000000000000000000000000000002101 170.0
LYD2_k127_662026_0 secondary active sulfate transmembrane transporter activity K06901 - - 9.295e-252 786.0
LYD2_k127_662026_1 Aminotransferase class-III K00833 - 2.6.1.62 1.25e-201 639.0
LYD2_k127_662026_2 Belongs to the LOG family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005374 301.0
LYD2_k127_662026_3 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - 0.000000000000000000000000000000000000000000000000000005344 196.0
LYD2_k127_66404_0 Belongs to the Orn Lys Arg decarboxylase class-II family K12526 - 2.7.2.4,4.1.1.20 0.0 1252.0
LYD2_k127_66404_1 phenazine biosynthesis protein PhzF family - - - 0.000000000000000000000000000000000000000000002636 170.0
LYD2_k127_66404_2 - - - - 0.00000000000000000000000000000000000004779 148.0
LYD2_k127_665784_0 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 500.0
LYD2_k127_665784_1 ECF sigma factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002443 248.0
LYD2_k127_665784_2 acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002292 241.0
LYD2_k127_665784_3 curli production assembly transport component CsgG - - - 0.00000000000000000000000000000000000000000000000000000003321 208.0
LYD2_k127_665784_4 Domain of unknown function (DUF5122) beta-propeller - - - 0.0000000000000000000000000000000000000000000000000004335 202.0
LYD2_k127_683506_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 7.139e-260 807.0
LYD2_k127_683506_1 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 3.172e-221 698.0
LYD2_k127_683506_2 Histidine kinase - - - 3.692e-210 664.0
LYD2_k127_683506_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 1.605e-201 640.0
LYD2_k127_683506_4 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 375.0
LYD2_k127_683506_5 Cro/C1-type HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 343.0
LYD2_k127_683506_6 FRG domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 334.0
LYD2_k127_683506_7 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.000000000000000000000000000000000000000000000000000009691 201.0
LYD2_k127_683506_8 cytochrome C - - - 0.000000000000000000000000000000001318 138.0
LYD2_k127_683506_9 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.00007821 53.0
LYD2_k127_686422_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.243e-225 702.0
LYD2_k127_686422_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009722 396.0
LYD2_k127_686422_2 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 366.0
LYD2_k127_686422_3 transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000001531 192.0
LYD2_k127_686422_4 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000001114 171.0
LYD2_k127_686422_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000001619 168.0
LYD2_k127_699545_0 Oar protein - - - 0.0 1763.0
LYD2_k127_699545_1 Histidine kinase - - - 0.0 1387.0
LYD2_k127_699545_10 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004419 312.0
LYD2_k127_699545_11 NnrU protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 289.0
LYD2_k127_699545_12 LuxR family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000101 284.0
LYD2_k127_699545_13 UPF0056 membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001324 278.0
LYD2_k127_699545_14 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000000000002336 185.0
LYD2_k127_699545_15 MaoC like domain - - - 0.000000000000000000000000000000000000000000005796 168.0
LYD2_k127_699545_2 TonB-dependent Receptor Plug Domain K02014 - - 2.785e-253 801.0
LYD2_k127_699545_3 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 8.822e-236 737.0
LYD2_k127_699545_4 transporter - - - 1.908e-230 720.0
LYD2_k127_699545_5 3HB-oligomer hydrolase (3HBOH) K07518 - 3.1.1.22 1.44e-228 724.0
LYD2_k127_699545_6 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009649 508.0
LYD2_k127_699545_7 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007467 377.0
LYD2_k127_699545_8 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 377.0
LYD2_k127_699545_9 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 338.0
LYD2_k127_705333_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006790,GO:0008150,GO:0008152,GO:0009337,GO:0009987,GO:0016002,GO:0016491,GO:0016667,GO:0016673,GO:0019419,GO:0032991,GO:0044237,GO:0044424,GO:0044464,GO:0050311,GO:0055114 1.8.1.2 1.338e-277 864.0
LYD2_k127_705333_1 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component K00380 - 1.8.1.2 3.263e-239 752.0
LYD2_k127_705333_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 586.0
LYD2_k127_705333_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 457.0
LYD2_k127_705333_4 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 419.0
LYD2_k127_705333_5 Belongs to the PAPS reductase family. CysH subfamily K00390 GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0044424,GO:0044464,GO:0055114 1.8.4.10,1.8.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008758 385.0
LYD2_k127_705333_6 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 348.0
LYD2_k127_705333_7 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000007716 231.0
LYD2_k127_705333_8 Universal stress protein family - - - 0.000000000000000000000000000000000000000001315 164.0
LYD2_k127_71204_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0 1024.0
LYD2_k127_71204_1 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 3.551e-241 760.0
LYD2_k127_71204_10 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 339.0
LYD2_k127_71204_11 Hydrolase K20862 - 3.1.3.102,3.1.3.104 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 295.0
LYD2_k127_71204_12 Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins K03571 - - 0.00000000000000000000000000000000000000000000000000000004928 197.0
LYD2_k127_71204_13 Belongs to the UPF0250 family K09158 - - 0.00000000000000000000000000000000002687 137.0
LYD2_k127_71204_2 Belongs to the peptidase M17 family K01255 - 3.4.11.1 1.21e-210 664.0
LYD2_k127_71204_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 603.0
LYD2_k127_71204_4 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007283 582.0
LYD2_k127_71204_5 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003347 575.0
LYD2_k127_71204_6 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 542.0
LYD2_k127_71204_7 murein transglycosylase K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000826 447.0
LYD2_k127_71204_8 ABC-type phosphate transport system, periplasmic component K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 382.0
LYD2_k127_71204_9 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 386.0
LYD2_k127_716831_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1604.0
LYD2_k127_716831_1 Domain of Unknown Function (DUF349) - - - 1.53e-234 752.0
LYD2_k127_716831_2 trab family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 566.0
LYD2_k127_716831_3 Acyltransferase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 518.0
LYD2_k127_716831_4 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 319.0
LYD2_k127_716831_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004575 275.0
LYD2_k127_732762_0 non-ribosomal peptide synthetase - - - 0.0 2817.0
LYD2_k127_732762_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 5.32e-253 794.0
LYD2_k127_732762_10 PFAM Peptidase M11 gametolysin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 389.0
LYD2_k127_732762_11 Cupin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 354.0
LYD2_k127_732762_12 protein involved in exopolysaccharide biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 349.0
LYD2_k127_732762_13 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 363.0
LYD2_k127_732762_14 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 332.0
LYD2_k127_732762_15 Lactonase, 7-bladed beta-propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 316.0
LYD2_k127_732762_16 PFAM Peptidase M11 gametolysin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 315.0
LYD2_k127_732762_17 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 310.0
LYD2_k127_732762_18 Sugar ABC transporter substrate-binding protein K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004015 267.0
LYD2_k127_732762_19 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009534 264.0
LYD2_k127_732762_2 non-ribosomal peptide synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 616.0
LYD2_k127_732762_20 glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002938 262.0
LYD2_k127_732762_21 Kelch motif - - - 0.00000000000000000000000000000000000000000000000000000000000000002175 241.0
LYD2_k127_732762_22 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000004788 237.0
LYD2_k127_732762_23 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000000000000000000000000000000004825 228.0
LYD2_k127_732762_24 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000155 227.0
LYD2_k127_732762_25 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000008744 231.0
LYD2_k127_732762_26 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000001356 220.0
LYD2_k127_732762_27 TetR family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000001234 207.0
LYD2_k127_732762_28 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000647 203.0
LYD2_k127_732762_29 Gram-negative-bacterium-type cell wall biogenesis - GO:0000270,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0030203,GO:0031224,GO:0042546,GO:0043164,GO:0043170,GO:0044085,GO:0044425,GO:0044464,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901564 - 0.00000000000000000000000000000000000000000000000001468 188.0
LYD2_k127_732762_3 NAD dependent epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004495 543.0
LYD2_k127_732762_30 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000001127 184.0
LYD2_k127_732762_31 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000002106 160.0
LYD2_k127_732762_32 Sigma-70, region 4 K03088 GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000002887 138.0
LYD2_k127_732762_33 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000004238 144.0
LYD2_k127_732762_34 Belongs to the P-Pant transferase superfamily - - - 0.00000000000000000000000000000002607 135.0
LYD2_k127_732762_35 Acetyltransferase - - - 0.0000000000000000000000000000003831 128.0
LYD2_k127_732762_36 Acetyltransferase - - - 0.000000000000000000000000000001192 127.0
LYD2_k127_732762_37 Plasmid stabilization - - - 0.0000000000000000000009558 96.0
LYD2_k127_732762_38 Domain of unknown function (DUF2383) - - - 0.0000000000000000415 94.0
LYD2_k127_732762_4 COG2148 Sugar transferases involved in lipopolysaccharide synthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 547.0
LYD2_k127_732762_5 protein involved in exopolysaccharide biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 536.0
LYD2_k127_732762_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005269 507.0
LYD2_k127_732762_7 O-Antigen ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 490.0
LYD2_k127_732762_8 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 455.0
LYD2_k127_732762_9 Glycosyl transferases group 1 K21001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 428.0
LYD2_k127_734142_0 metallophosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 505.0
LYD2_k127_734142_1 OST-HTH/LOTUS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007731 434.0
LYD2_k127_734142_10 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.00000000000000000000000003542 113.0
LYD2_k127_734142_11 - - - - 0.000000000000000000000000881 111.0
LYD2_k127_734142_12 IgGFc binding protein - - - 0.0000000000000005936 91.0
LYD2_k127_734142_13 - - - - 0.000000000000002081 78.0
LYD2_k127_734142_16 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000003358 58.0
LYD2_k127_734142_2 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002174 268.0
LYD2_k127_734142_3 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004311 249.0
LYD2_k127_734142_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000102 243.0
LYD2_k127_734142_5 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000002702 210.0
LYD2_k127_734142_6 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000000005363 201.0
LYD2_k127_734142_7 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000001026 177.0
LYD2_k127_734142_8 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000002596 147.0
LYD2_k127_734142_9 YjbR - - - 0.0000000000000000000000000000000009645 137.0
LYD2_k127_737610_0 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster K06877 - - 0.0 1186.0
LYD2_k127_737610_1 Patatin-like phospholipase K07001 - - 2.129e-198 642.0
LYD2_k127_737610_10 exonuclease K07502 - - 0.0000000000000000000000000000000000000000000000000000000000000001868 242.0
LYD2_k127_737610_11 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000003254 211.0
LYD2_k127_737610_12 Belongs to the bacterial histone-like protein family - - - 0.00000000000000000000000000000000000000000000003725 171.0
LYD2_k127_737610_13 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000004333 135.0
LYD2_k127_737610_14 - - - - 0.00000000000000000004951 91.0
LYD2_k127_737610_2 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 604.0
LYD2_k127_737610_3 Type II/IV secretion system protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 541.0
LYD2_k127_737610_4 Male sterility protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 487.0
LYD2_k127_737610_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004249 443.0
LYD2_k127_737610_6 exodeoxyribonuclease iii K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 434.0
LYD2_k127_737610_7 Type II/IV secretion system protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 424.0
LYD2_k127_737610_8 A domain family that is part of the cupin metalloenzyme superfamily. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005073 397.0
LYD2_k127_737610_9 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 346.0
LYD2_k127_743396_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005753 561.0
LYD2_k127_743396_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 441.0
LYD2_k127_743396_2 Coenzyme A transferase K01029,K01035 - 2.8.3.5,2.8.3.8,2.8.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 333.0
LYD2_k127_743396_3 Coenzyme A transferase K01034 - 2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 335.0
LYD2_k127_743396_4 OsmC-like protein K07397 - - 0.00000000000000000000000000000000000000000000000000000001586 201.0
LYD2_k127_743396_5 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000746 198.0
LYD2_k127_743396_6 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000002902 162.0
LYD2_k127_745678_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1172.0
LYD2_k127_745678_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg - - - 0.0 1100.0
LYD2_k127_745678_10 FG-GAP repeat - - - 0.00000000000000000000000000000000001434 156.0
LYD2_k127_745678_11 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000005039 108.0
LYD2_k127_745678_12 Protein of unknown function (DUF1428) - - - 0.000447 42.0
LYD2_k127_745678_2 de-polymerase K05973 - 3.1.1.75 3.12e-230 720.0
LYD2_k127_745678_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007629 442.0
LYD2_k127_745678_4 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K01802 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 426.0
LYD2_k127_745678_5 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 408.0
LYD2_k127_745678_6 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 375.0
LYD2_k127_745678_7 Putative sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 339.0
LYD2_k127_745678_9 PadR family transcriptional regulator K10947 - - 0.0000000000000000000000000000000000000000000000000002526 187.0
LYD2_k127_750433_0 Outer membrane receptor - - - 0.0 1052.0
LYD2_k127_750433_1 COG0457 FOG TPR repeat - - - 1.425e-271 847.0
LYD2_k127_750433_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 366.0
LYD2_k127_750433_3 Regulatory protein, FmdB family - - - 0.000000000000000000000000000000000002065 141.0
LYD2_k127_762665_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 4.386e-316 983.0
LYD2_k127_762665_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007602 555.0
LYD2_k127_762665_2 Zn-dependent hydrolases including glyoxylases - - - 0.000000000000000000000000000000000000000004765 164.0
LYD2_k127_762665_3 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.000000000000000000000000000000000000000009273 158.0
LYD2_k127_762665_4 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000001532 145.0
LYD2_k127_764245_0 ChrR Cupin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007179 280.0
LYD2_k127_764245_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005248 268.0
LYD2_k127_764245_2 Bacterial regulatory proteins, tetR family K16137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000015 266.0
LYD2_k127_764245_3 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000000000000000000000000002251 195.0
LYD2_k127_764245_4 MAPEG family - - - 0.0000000000000000000003616 97.0
LYD2_k127_764245_5 - - - - 0.0000000002361 70.0
LYD2_k127_764245_6 Cupin 2, conserved barrel domain protein - - - 0.00000001981 64.0
LYD2_k127_767750_0 asparaginyl-tRNA synthetase K01893 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 7.526e-284 879.0
LYD2_k127_767750_1 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 1.442e-258 801.0
LYD2_k127_767750_10 guanyl-nucleotide exchange factor activity - - - 0.0000000001766 65.0
LYD2_k127_767750_2 Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 568.0
LYD2_k127_767750_3 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 464.0
LYD2_k127_767750_4 TIGRFAM Molybdate ABC transporter K02018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 329.0
LYD2_k127_767750_5 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 325.0
LYD2_k127_767750_6 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006756 259.0
LYD2_k127_767750_7 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000002967 227.0
LYD2_k127_767750_8 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000001826 184.0
LYD2_k127_767750_9 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000004944 139.0
LYD2_k127_776299_0 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 437.0
LYD2_k127_776299_1 OsmC-like protein K04063 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0033194,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748 - 0.0000000000000000000000000000000000000000000000000000000000000001565 225.0
LYD2_k127_776299_2 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000001842 187.0
LYD2_k127_776299_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000002477 182.0
LYD2_k127_776299_4 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000000003592 170.0
LYD2_k127_776299_5 Histidine kinase - - - 0.000000000000000000000000000000000000003519 162.0
LYD2_k127_776299_6 SnoaL-like domain K06893 - - 0.0000000000000000000000000000000005018 137.0
LYD2_k127_776299_7 receptor - - - 0.0000000000000002969 78.0
LYD2_k127_776299_8 transcriptional regulator - - - 0.00000000001048 76.0
LYD2_k127_776299_9 Esterase-like activity of phytase - - - 0.000002242 58.0
LYD2_k127_779865_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004742 469.0
LYD2_k127_779865_1 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 291.0
LYD2_k127_779865_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000002972 99.0
LYD2_k127_779865_3 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.00001012 59.0
LYD2_k127_785872_0 Domain of Unknown Function (DUF748) - - - 0.0 1615.0
LYD2_k127_785872_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 563.0
LYD2_k127_785872_2 Participates in the control of copper homeostasis K06201 - - 0.0000000000000000000000000000000000000000000000000000000000007836 216.0
LYD2_k127_785872_3 - - - - 0.0000000000000000005369 94.0
LYD2_k127_790687_0 heptosyltransferase K12982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 552.0
LYD2_k127_790687_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 520.0
LYD2_k127_790687_2 Metal-dependent hydrolases of the beta-lactamase superfamily III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 404.0
LYD2_k127_790687_3 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 311.0
LYD2_k127_790687_4 PFAM glycosyl transferase family 9 - - - 0.00000000000000000000000000000000000000000000002286 181.0
LYD2_k127_790687_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000003247 61.0
LYD2_k127_790687_7 SnoaL-like domain K01822 - 5.3.3.1 0.000156 51.0
LYD2_k127_791241_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 508.0
LYD2_k127_791241_1 asparaginase K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 476.0
LYD2_k127_791241_10 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000000000000000000000000000000000000000000000000002486 202.0
LYD2_k127_791241_11 MAPEG family - - - 0.00000000000000000000000000000000000000000004928 164.0
LYD2_k127_791241_12 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000000000009183 160.0
LYD2_k127_791241_13 domain, Protein - - - 0.000000000000000000000000000000000000005296 164.0
LYD2_k127_791241_14 General secretion pathway protein J K02459 - - 0.000000000000000000000000000000001009 139.0
LYD2_k127_791241_15 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000000154 141.0
LYD2_k127_791241_16 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.000000000000000000000000002837 126.0
LYD2_k127_791241_17 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02462 - - 0.00000000000000000000002137 115.0
LYD2_k127_791241_18 Type II secretion system (T2SS), protein N K02463 - - 0.00000000000000000004557 100.0
LYD2_k127_791241_19 general secretion pathway protein K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.000000000001255 74.0
LYD2_k127_791241_2 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 468.0
LYD2_k127_791241_20 - - - - 0.000000002365 61.0
LYD2_k127_791241_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 458.0
LYD2_k127_791241_4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 420.0
LYD2_k127_791241_5 Inositol monophosphatase family K05602 - 3.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002672 410.0
LYD2_k127_791241_6 nucleotidase K01082 - 3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 400.0
LYD2_k127_791241_7 Nucleoside triphosphate K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 394.0
LYD2_k127_791241_8 ADP-ribose diphosphatase K08312 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007678 307.0
LYD2_k127_791241_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 293.0
LYD2_k127_791369_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 1.736e-249 775.0
LYD2_k127_791369_1 stringent starvation protein A K03599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 352.0
LYD2_k127_791369_10 Belongs to the NadC ModD family K00767 GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034213,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605 2.4.2.19 0.000000000006031 66.0
LYD2_k127_791369_2 cytochrome K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005802 355.0
LYD2_k127_791369_3 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 351.0
LYD2_k127_791369_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005962 331.0
LYD2_k127_791369_5 Protein tyrosine kinase K11912 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 322.0
LYD2_k127_791369_6 transglycosylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002376 235.0
LYD2_k127_791369_7 stringent starvation protein b K03600 - - 0.000000000000000000000000000000000000000000000000000000002853 202.0
LYD2_k127_791369_8 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000000007164 196.0
LYD2_k127_791369_9 Protein of unknown function (DUF3301) - - - 0.0000000000000000000000001686 110.0
LYD2_k127_794130_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1042.0
LYD2_k127_794130_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 6.738e-226 707.0
LYD2_k127_794130_10 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000003162 156.0
LYD2_k127_794130_11 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.0000000000000000000000000000000002047 136.0
LYD2_k127_794130_12 succinate dehydrogenase activity K00242 GO:0000104,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016491,GO:0016627,GO:0016999,GO:0017004,GO:0017144,GO:0019752,GO:0020037,GO:0022607,GO:0022900,GO:0032991,GO:0034622,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0065003,GO:0070469,GO:0070470,GO:0071704,GO:0071840,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901363,GO:1902494,GO:1990204 - 0.0000000000000000000000177 104.0
LYD2_k127_794130_13 - - - - 0.00000000001338 68.0
LYD2_k127_794130_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 531.0
LYD2_k127_794130_3 Transcriptional regulator K07110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 518.0
LYD2_k127_794130_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007135 439.0
LYD2_k127_794130_5 Glutathione S-transferase, C-terminal domain K07393 GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 429.0
LYD2_k127_794130_6 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 396.0
LYD2_k127_794130_7 succinate dehydrogenase fumarate reductase K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008249 388.0
LYD2_k127_794130_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001453 262.0
LYD2_k127_794130_9 PFAM DoxX family protein K15977 - - 0.000000000000000000000000000000000000000000000000000000636 195.0
LYD2_k127_816562_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 4.62e-287 891.0
LYD2_k127_816562_1 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 2.806e-220 691.0
LYD2_k127_816562_11 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000003116 108.0
LYD2_k127_816562_12 Protein of unknown function (DUF465) - - - 0.0000000000000000007244 91.0
LYD2_k127_816562_14 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000006257 74.0
LYD2_k127_816562_2 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000607 524.0
LYD2_k127_816562_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005921 483.0
LYD2_k127_816562_4 May be involved in recombination K03554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 437.0
LYD2_k127_816562_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 425.0
LYD2_k127_816562_6 Metal-dependent hydrolase K07043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 418.0
LYD2_k127_816562_7 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 336.0
LYD2_k127_816562_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 312.0
LYD2_k127_816562_9 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005472 312.0
LYD2_k127_818215_0 Acetyl-coenzyme A synthetase N-terminus K01908 - 6.2.1.17 0.0 1104.0
LYD2_k127_818215_1 also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity K01659 - 2.3.3.5 1.859e-219 684.0
LYD2_k127_818215_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 575.0
LYD2_k127_818215_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 - 4.1.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 523.0
LYD2_k127_818215_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000005346 207.0
LYD2_k127_818215_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000000000000000000000002543 201.0
LYD2_k127_818215_6 - - - - 0.00000000000000000000000000000000000000000000005254 180.0
LYD2_k127_818215_7 - - - - 0.000000000000000000000000000000000000000001629 163.0
LYD2_k127_818215_8 - - - - 0.000000000000000000000000000000000002865 142.0
LYD2_k127_818215_9 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.00000004137 61.0
LYD2_k127_870687_0 BNR repeat-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000572 372.0
LYD2_k127_870687_1 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002334 295.0
LYD2_k127_870687_2 domain, Protein K19231,K21449 - - 0.000000000003608 76.0
LYD2_k127_870687_3 Hemerythrin HHE cation binding domain - - - 0.0000001396 56.0
LYD2_k127_873073_0 TonB dependent receptor K02014 - - 0.0 1053.0
LYD2_k127_873073_1 acyl-coa dehydrogenase - - - 0.0 1011.0
LYD2_k127_873073_2 DNA helicase K03654 - 3.6.4.12 3.726e-284 883.0
LYD2_k127_873073_3 endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 355.0
LYD2_k127_873073_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000007615 225.0
LYD2_k127_873073_5 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000003835 237.0
LYD2_k127_873073_7 Domain of unknown function DUF11 - - - 0.0000000000000000000199 104.0
LYD2_k127_874279_0 Cardiolipin synthase K06132 - - 2.159e-199 636.0
LYD2_k127_874279_1 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008444 259.0
LYD2_k127_874279_2 Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000000000003126 200.0
LYD2_k127_874279_3 PFAM transport-associated - - - 0.0000000000000000001457 99.0
LYD2_k127_889751_0 GatB domain - - - 1.028e-244 769.0
LYD2_k127_889751_1 Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia - - - 5.726e-230 721.0
LYD2_k127_889751_10 Multicopper oxidase K22348 - 1.16.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008528 434.0
LYD2_k127_889751_11 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 424.0
LYD2_k127_889751_12 Biotin-lipoyl like K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004265 428.0
LYD2_k127_889751_13 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009153 344.0
LYD2_k127_889751_14 hemolysin III K11068 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003504 263.0
LYD2_k127_889751_15 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001753 239.0
LYD2_k127_889751_16 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000001507 235.0
LYD2_k127_889751_17 protein conserved in bacteria K09793 - - 0.0000000000000000000000000000000000000000000000000000000000004457 227.0
LYD2_k127_889751_18 3-demethylubiquinone-9 3-O-methyltransferase activity K13611,K13612,K13613,K15675,K15676,K18827 - 2.1.1.294,2.7.1.181 0.00000000000000000000000000000000000000000000000000000000002129 213.0
LYD2_k127_889751_19 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000001284 213.0
LYD2_k127_889751_2 Rod shape-determining protein K03569 - - 1.332e-207 649.0
LYD2_k127_889751_20 - - - - 0.00000000000000000000000000000000000000000000000000000003955 215.0
LYD2_k127_889751_21 conserved protein UCP033924 - - - 0.0000000000000000000000000000000000000000000000000000002217 199.0
LYD2_k127_889751_22 diguanylate cyclase - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000001219 187.0
LYD2_k127_889751_23 Glu-tRNAGln amidotransferase C subunit - - - 0.000000000000000000000000000000001118 135.0
LYD2_k127_889751_24 Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins K03571 - - 0.0000000000000000000000009194 106.0
LYD2_k127_889751_25 PFAM Rhomboid family - - - 0.00000000000000000000001459 115.0
LYD2_k127_889751_3 efflux transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 580.0
LYD2_k127_889751_4 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 555.0
LYD2_k127_889751_5 Sugar kinase K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004758 534.0
LYD2_k127_889751_6 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541 519.0
LYD2_k127_889751_7 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 460.0
LYD2_k127_889751_8 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 448.0
LYD2_k127_889751_9 Nitronate monooxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 428.0
LYD2_k127_896553_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 3.386e-241 754.0
LYD2_k127_896553_1 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 587.0
LYD2_k127_896553_2 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 570.0
LYD2_k127_896553_3 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 355.0
LYD2_k127_896553_4 Protein of unknown function (DUF3025) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 293.0
LYD2_k127_896553_5 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000001026 257.0
LYD2_k127_896553_6 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000002485 239.0
LYD2_k127_896553_7 Protein of unknown function (DUF3025) - - - 0.000000000002306 68.0
LYD2_k127_911271_0 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle K01638 - 2.3.3.9 1.926e-316 973.0
LYD2_k127_911271_1 aminotransferase class I and II K00375 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 509.0
LYD2_k127_911271_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 474.0
LYD2_k127_911271_3 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 367.0
LYD2_k127_911271_4 Methyltransferase K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 333.0
LYD2_k127_911271_5 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003405 312.0
LYD2_k127_911271_6 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000007018 176.0
LYD2_k127_911271_7 Adenylate cyclase - - - 0.00000000000000000000000000000000000001564 146.0
LYD2_k127_911271_8 ferredoxin - - - 0.00000000000000000000000000000001569 130.0
LYD2_k127_911271_9 SnoaL-like domain - - - 0.000000000000000000000001019 112.0
LYD2_k127_942612_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1362.0
LYD2_k127_942612_1 Domain of unknown function (DUF4139) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 606.0
LYD2_k127_942612_2 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 361.0
LYD2_k127_942612_3 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 296.0
LYD2_k127_942612_4 DNA mismatch repair protein MutT - - - 0.000000000000000000000000000000000000000000000000000000000000000000008314 239.0
LYD2_k127_942612_5 thioesterase K07107 - - 0.0000000000000000000000000000000000000000000009704 169.0
LYD2_k127_942612_6 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000000000000000000001425 146.0
LYD2_k127_942612_7 Protein of unknown function (DUF1289) - - - 0.00000000000000305 77.0
LYD2_k127_942612_8 Peptidyl-prolyl cis-trans K01802,K03773 - 5.2.1.8 0.0000000001165 61.0
LYD2_k127_951956_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 2.585e-200 628.0
LYD2_k127_951956_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003188 438.0
LYD2_k127_951956_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 358.0
LYD2_k127_951956_3 Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins K07400 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 285.0
LYD2_k127_951956_4 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000000000000000000006489 171.0
LYD2_k127_951956_5 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000000000005301 182.0
LYD2_k127_951956_6 Cytochrome c - - - 0.00000000000000000000000000000000000000004295 156.0
LYD2_k127_951956_7 cytochrome - - - 0.00000000000000000000000000000000000004365 152.0
LYD2_k127_961214_0 reverse transcriptase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 539.0
LYD2_k127_961214_1 PFAM ParB domain protein nuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 361.0
LYD2_k127_961214_3 Protein of unknown function (DUF1566) - - - 0.0000000000003674 77.0
LYD2_k127_961214_4 protein kinase activity - - - 0.00000003693 64.0
LYD2_k127_999540_0 amino acid K03294 - - 8.819e-254 790.0
LYD2_k127_999540_1 amino acid K03294 - - 1.579e-240 752.0
LYD2_k127_999540_10 Elongation factor P K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000001389 159.0
LYD2_k127_999540_2 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001523 477.0
LYD2_k127_999540_3 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 323.0
LYD2_k127_999540_4 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0019509,GO:0019752,GO:0042578,GO:0043094,GO:0043102,GO:0043436,GO:0043874,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 323.0
LYD2_k127_999540_5 Peptidase C13 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 318.0
LYD2_k127_999540_6 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 GO:0000096,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0010309,GO:0016491,GO:0016701,GO:0016702,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0051213,GO:0055114,GO:0071704,GO:1901564,GO:1901605 1.13.11.53,1.13.11.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 306.0
LYD2_k127_999540_7 NUDIX domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002892 238.0
LYD2_k127_999540_8 Bacterial PH domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005121 231.0
LYD2_k127_999540_9 PFAM Isoprenylcysteine carboxyl methyltransferase - - - 0.00000000000000000000000000000000000000000000002373 181.0