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Overview

ID MAG02047
Name LYD2_bin.9
Sample SMP0053
Taxonomy
Kingdom Bacteria
Phylum Nitrospirota
Class Nitrospiria
Order Nitrospirales
Family Nitrospiraceae
Genus Palsa-1315
Species
Assembly information
Completeness (%) 82.59
Contamination (%) 0.86
GC content (%) 56.0
N50 (bp) 7,353
Genome size (bp) 3,463,472

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3173

Gene name Description KEGG GOs EC E-value Score Sequence
LYD2_k127_1002833_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 5.994e-257 821.0
LYD2_k127_1002833_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00124,K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007189 519.0
LYD2_k127_1002833_2 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000000001333 132.0
LYD2_k127_1003882_0 Cytochrome c K02305,K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004283 417.0
LYD2_k127_1003882_1 Ethylbenzene dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009909 364.0
LYD2_k127_1003882_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 305.0
LYD2_k127_10142_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1115.0
LYD2_k127_10142_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 1.796e-214 671.0
LYD2_k127_10142_2 helicase activity K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 516.0
LYD2_k127_10142_3 Domain of unknown function (DUF4321) - - - 0.000000000000000000000000000005924 120.0
LYD2_k127_1015209_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 1.095e-259 813.0
LYD2_k127_1015209_1 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 298.0
LYD2_k127_1015209_2 PFAM Integrase catalytic - - - 0.000000000000000000000000000000008284 131.0
LYD2_k127_1015209_3 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.00000000000000000000000000000284 132.0
LYD2_k127_1015209_4 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000002181 121.0
LYD2_k127_1015209_7 transposition - - - 0.00000009992 56.0
LYD2_k127_1030629_0 Glycine cleavage system P-protein K00281,K00283 - 1.4.4.2 0.0 1479.0
LYD2_k127_1042551_0 PFAM MscS Mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001608 273.0
LYD2_k127_1042551_1 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.0000000000000000000000000000002348 139.0
LYD2_k127_1042551_2 FRG - - - 0.0000000000000000000000000006441 125.0
LYD2_k127_1042551_3 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.000000000000000000001403 97.0
LYD2_k127_1044123_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 1.481e-308 962.0
LYD2_k127_1044123_1 symporter activity K03307,K14387 - - 1.261e-208 657.0
LYD2_k127_1044123_2 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000000000000000002808 188.0
LYD2_k127_1044123_3 AI-2E family transporter - - - 0.0000000000000000000009772 97.0
LYD2_k127_105308_0 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K11959 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008341 608.0
LYD2_k127_105308_1 short chain amide porin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 386.0
LYD2_k127_105308_2 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006036 366.0
LYD2_k127_105308_3 response regulator K02282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003025 276.0
LYD2_k127_105308_4 branched-chain amino acid transport system, permease component K11961 - - 0.0000000000000000000003648 101.0
LYD2_k127_105308_5 Histidine kinase K07683 - 2.7.13.3 0.000000000000000002139 87.0
LYD2_k127_1072657_0 Cobalamin synthesis protein cobW C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 417.0
LYD2_k127_1072657_1 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 355.0
LYD2_k127_1072657_2 Nitrile hydratase K01721 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 345.0
LYD2_k127_1072657_3 elongator protein 3 miab nifb - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 314.0
LYD2_k127_1072657_4 Nitrile hydratase beta subunit - - - 0.0000000000000000000000000000000000001137 145.0
LYD2_k127_1072657_5 Integrase core domain K07497 - - 0.0000000000000000000000000000000000001268 143.0
LYD2_k127_1079641_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000992 186.0
LYD2_k127_1079641_1 Isochorismatase family - - - 0.0000000005547 64.0
LYD2_k127_1079641_2 - - - - 0.0001104 48.0
LYD2_k127_1082485_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1050.0
LYD2_k127_1082485_1 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 372.0
LYD2_k127_1082485_2 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000002135 163.0
LYD2_k127_1095301_0 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.0000000000000000000000000000000000000000000000001119 179.0
LYD2_k127_1095301_1 Transposase - - - 0.000000000000000000000000000005797 121.0
LYD2_k127_1095301_2 transposition - - - 0.000000000000000005115 89.0
LYD2_k127_1095301_3 Protein of unknown function (DUF1328) - - - 0.00000000006435 64.0
LYD2_k127_1102023_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 1.634e-223 698.0
LYD2_k127_1102023_1 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 8.225e-211 664.0
LYD2_k127_1102023_2 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 389.0
LYD2_k127_1102023_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 347.0
LYD2_k127_1107817_0 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006182 530.0
LYD2_k127_1107817_1 PLD-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001311 224.0
LYD2_k127_111519_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 7.312e-210 658.0
LYD2_k127_111519_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003479 479.0
LYD2_k127_111519_2 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000009527 214.0
LYD2_k127_111519_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078,K05553 - - 0.00000000000000000000000005671 112.0
LYD2_k127_111519_5 Predicted permease YjgP/YjgQ family K11720 - - 0.0000000000000004077 78.0
LYD2_k127_112748_0 Formate--tetrahydrofolate ligase K01938 GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 3.85e-276 857.0
LYD2_k127_112748_1 stress-induced mitochondrial fusion K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 495.0
LYD2_k127_112748_2 stress-induced mitochondrial fusion K04087 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0016020,GO:0016021,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0031233,GO:0032991,GO:0043086,GO:0043170,GO:0044092,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0098796,GO:0140096,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 475.0
LYD2_k127_112748_3 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003216 426.0
LYD2_k127_112748_4 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000007434 221.0
LYD2_k127_112748_5 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000362 179.0
LYD2_k127_112748_6 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000002263 114.0
LYD2_k127_112889_0 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 609.0
LYD2_k127_112889_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005069 597.0
LYD2_k127_112889_10 stress-induced mitochondrial fusion K04088 - - 0.0000000000000000000000000001493 117.0
LYD2_k127_112889_11 ThiS family K03636 - - 0.00000000000000000002298 94.0
LYD2_k127_112889_12 SnoaL-like domain - - - 0.000000000003019 67.0
LYD2_k127_112889_2 methyltransferase K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 577.0
LYD2_k127_112889_3 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 374.0
LYD2_k127_112889_5 phosphate transporter K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000001835 242.0
LYD2_k127_112889_6 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000001477 226.0
LYD2_k127_112889_8 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000000000002847 155.0
LYD2_k127_112889_9 positive regulation of type IV pilus biogenesis K07343 - - 0.000000000000000000000000000000002791 132.0
LYD2_k127_1128953_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 2.869e-197 622.0
LYD2_k127_1128953_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 1.436e-195 617.0
LYD2_k127_1128953_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 407.0
LYD2_k127_1128953_3 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 334.0
LYD2_k127_1128953_4 Diaminopimelate epimerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008713 283.0
LYD2_k127_1128953_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000008982 75.0
LYD2_k127_1149554_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 1.595e-249 776.0
LYD2_k127_1149554_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003638 271.0
LYD2_k127_1152222_0 siderophore transport K02014 - - 0.0 1331.0
LYD2_k127_1152222_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 GO:0003674,GO:0003824,GO:0003849,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006909 565.0
LYD2_k127_1161028_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009616 513.0
LYD2_k127_1161028_1 Product type r regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001522 282.0
LYD2_k127_1161028_10 response regulator - - - 0.0000000000009099 74.0
LYD2_k127_1161028_11 Response regulator, receiver - - - 0.00000000001742 70.0
LYD2_k127_1161028_12 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain - - - 0.0000000006479 63.0
LYD2_k127_1161028_14 DDE superfamily endonuclease - - - 0.000001835 49.0
LYD2_k127_1161028_15 - - - - 0.000003682 48.0
LYD2_k127_1161028_16 - - - - 0.00003284 48.0
LYD2_k127_1161028_17 Helix-hairpin-helix motif - - - 0.0001428 50.0
LYD2_k127_1161028_18 COG2041 Sulfite oxidase and related enzymes - - - 0.0006651 42.0
LYD2_k127_1161028_2 PFAM AhpC TSA family - - - 0.00000000000000000000000000000000000000000000005285 175.0
LYD2_k127_1161028_4 DNA-binding transcription factor activity - - - 0.0000000000000000000000000000000000000002395 158.0
LYD2_k127_1161028_6 - - - - 0.000000000000000000000000000006272 123.0
LYD2_k127_1161028_7 - - - - 0.00000000000000000001417 97.0
LYD2_k127_1161028_9 Protein of unknown function DUF72 - - - 0.000000000000007758 76.0
LYD2_k127_117099_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007253 315.0
LYD2_k127_117099_1 transposase activity K07483,K07497 - - 0.0000000000000000000000000000000000000000000006949 168.0
LYD2_k127_117099_2 transposition K07497 - - 0.000000000000000000000000000000000000004625 148.0
LYD2_k127_117099_4 - - - - 0.000008954 52.0
LYD2_k127_1197199_0 heme binding K00463 - 1.13.11.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006198 487.0
LYD2_k127_1197199_1 domain protein K02004,K06994 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 314.0
LYD2_k127_1197199_2 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 297.0
LYD2_k127_1197199_3 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00322 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 1.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000001346 243.0
LYD2_k127_1197199_4 chlorophyll binding K02487,K12543 - - 0.000000000000000000000000000000000000000000000000000000000000000008203 232.0
LYD2_k127_1202513_0 Lysin motif K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 542.0
LYD2_k127_1202513_1 cell envelope organization K05807,K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001621 265.0
LYD2_k127_1218724_0 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 451.0
LYD2_k127_1218724_1 Heterogeneous nuclear ribonucleoprotein K12741,K14411 - - 0.0000003296 57.0
LYD2_k127_12604_0 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003228 322.0
LYD2_k127_12604_1 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 319.0
LYD2_k127_12604_2 Belongs to the HesB IscA family K15724 - - 0.000000000000000000000000000000000000000000000000000000008944 199.0
LYD2_k127_12604_3 synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000001253 197.0
LYD2_k127_1267512_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1262.0
LYD2_k127_1267512_1 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 302.0
LYD2_k127_1272969_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 1.727e-215 684.0
LYD2_k127_1272969_1 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 395.0
LYD2_k127_1272969_2 In Escherichia coli this enzyme appears to be an NAD NADP -dependent succinate semialdehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009929 314.0
LYD2_k127_1272969_3 Putative oxalocrotonate tautomerase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003744 266.0
LYD2_k127_1272969_4 In Escherichia coli this enzyme appears to be an NAD NADP -dependent succinate semialdehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000002028 237.0
LYD2_k127_1272969_5 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.00000000000000000000000000000000000000000000000000000000001333 209.0
LYD2_k127_1272969_6 Dehydrogenase - - - 0.0000000000000000000000000000000000000001103 154.0
LYD2_k127_1272969_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000002906 151.0
LYD2_k127_1272969_8 HxlR-like helix-turn-helix - - - 0.000000000000000000000000004045 114.0
LYD2_k127_1272969_9 Glutathione S-transferase N-terminal domain - - - 0.0000000000000000003568 92.0
LYD2_k127_1275266_0 DALR_2 K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 571.0
LYD2_k127_1275266_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000562 322.0
LYD2_k127_1275266_2 response regulator K03413 - - 0.0000000000000000000000000001504 118.0
LYD2_k127_1275266_3 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02236,K02278,K02506,K02654,K10966 - 3.4.23.43 0.00000000000000001715 83.0
LYD2_k127_1277113_0 leucine-zipper of insertion element IS481 K00986,K07497 - 2.7.7.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003349 286.0
LYD2_k127_1277113_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000002912 192.0
LYD2_k127_1277113_2 PRC-barrel domain - - - 0.00000000000000000000000000000000000000000008095 163.0
LYD2_k127_1277113_3 transposase activity K07483 - - 0.0000000000000000000000005105 109.0
LYD2_k127_127954_0 'glutamate synthase K00528,K03388 - 1.18.1.2,1.19.1.1,1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 3.316e-222 696.0
LYD2_k127_127954_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 526.0
LYD2_k127_127954_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 452.0
LYD2_k127_127954_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 382.0
LYD2_k127_1290528_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 2050.0
LYD2_k127_1290528_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 292.0
LYD2_k127_1290528_2 ACT domain - - - 0.00000000000000000000000000000000000000000000000000000000001216 209.0
LYD2_k127_1290528_4 Acetyl-coenzyme A transporter 1 K08218 - - 0.000000000000000000000000000000002201 130.0
LYD2_k127_1293070_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 5.227e-265 822.0
LYD2_k127_1293070_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 1.501e-254 794.0
LYD2_k127_1293070_10 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000124 177.0
LYD2_k127_1293070_11 Membrane K08988 - - 0.00000004085 55.0
LYD2_k127_1293070_2 SurA N-terminal domain K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 354.0
LYD2_k127_1293070_3 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009736 348.0
LYD2_k127_1293070_4 Asparaginase K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 330.0
LYD2_k127_1293070_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009399 321.0
LYD2_k127_1293070_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 295.0
LYD2_k127_1293070_7 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000001465 214.0
LYD2_k127_1293070_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06991 - - 0.00000000000000000000000000000000000000000000000000000000001686 214.0
LYD2_k127_1293070_9 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000008542 190.0
LYD2_k127_129436_0 Carbon-nitrogen hydrolase K03820 - - 9.182e-204 646.0
LYD2_k127_129436_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002 558.0
LYD2_k127_129436_2 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000002046 226.0
LYD2_k127_1310122_0 Mechanosensitive ion channel K05802 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005782 261.0
LYD2_k127_1310122_1 sodium:proton antiporter activity K03316 - - 0.00000000000000000000000000000235 124.0
LYD2_k127_1310122_2 Sulfate permease family - - - 0.000000007153 61.0
LYD2_k127_1310122_3 mechanosensitive ion channel - - - 0.00003329 51.0
LYD2_k127_1310122_4 repressor - - - 0.000127 52.0
LYD2_k127_1315497_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 457.0
LYD2_k127_1315497_1 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 377.0
LYD2_k127_1315497_10 - - - - 0.0001251 51.0
LYD2_k127_1315497_2 Protein of unknown function (DUF2442) - - - 0.000000000000000000000000000000000000000006491 160.0
LYD2_k127_1315497_4 Amino acid permease K03294 - - 0.000000000000000000000000000004374 125.0
LYD2_k127_1315497_5 Protein of unknown function (DUF2442) - - - 0.00000000000000005249 82.0
LYD2_k127_1315497_6 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.00000000000002745 76.0
LYD2_k127_1315497_7 FRG - - - 0.000004001 54.0
LYD2_k127_1315497_8 FRG - - - 0.00003837 49.0
LYD2_k127_1322029_0 Represses a number of genes involved in the response to DNA damage (SOS response) K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000008568 220.0
LYD2_k127_1322029_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.000000000000000652 88.0
LYD2_k127_1322029_2 - - - - 0.000000000000002774 79.0
LYD2_k127_1325586_0 methylisocitrate lyase activity K01841,K07281 - 2.7.7.74,5.4.2.9 1.997e-302 931.0
LYD2_k127_1325586_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.00000000000000000006856 89.0
LYD2_k127_1328081_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1382.0
LYD2_k127_1328081_1 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001073 253.0
LYD2_k127_1328081_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000002569 69.0
LYD2_k127_1328081_4 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives - - - 0.0000007086 58.0
LYD2_k127_1330696_0 actin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005156 507.0
LYD2_k127_1330696_1 macromolecule localization K01421,K01992,K09690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 420.0
LYD2_k127_1330696_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 362.0
LYD2_k127_1330696_4 RNA recognition motif - - - 0.00000000000000000000000000000000000000000001735 166.0
LYD2_k127_1330696_5 Evidence 2b Function of strongly homologous gene K18139 - - 0.0000000000000000000000004708 109.0
LYD2_k127_1330696_6 Mo-molybdopterin cofactor metabolic process K03750,K03753,K13818 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.10.1.1,2.7.7.77 0.00000000000000000009917 90.0
LYD2_k127_1330696_7 cheY-homologous receiver domain - - - 0.00000000000002281 79.0
LYD2_k127_1335660_0 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009423 494.0
LYD2_k127_1335660_1 photosynthesis K02453,K02660 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 364.0
LYD2_k127_1335660_3 maF-like protein K03215,K06287 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0030312,GO:0036218,GO:0036221,GO:0042802,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0047429,GO:0071944 2.1.1.190 0.000000000000000000000000001436 115.0
LYD2_k127_1346361_0 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009907 270.0
LYD2_k127_1346361_1 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000002 184.0
LYD2_k127_1346361_2 Protein of unknown function (DUF2945) - - - 0.000000000000000000000000000007011 123.0
LYD2_k127_1346361_3 Protein of unknown function, DUF488 - - - 0.000000000000000007957 85.0
LYD2_k127_1352085_0 Nitrite and sulphite reductase 4Fe-4S domain K00362,K00392 - 1.7.1.15,1.8.7.1 0.0 1268.0
LYD2_k127_1352085_1 sulfate adenylyltransferase (ATP) activity K00860,K00955,K00956 - 2.7.1.25,2.7.7.4 3.793e-269 835.0
LYD2_k127_1352085_2 sulfate reduction K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006671 505.0
LYD2_k127_1352085_3 Glycosyl transferase family, a/b domain K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 432.0
LYD2_k127_1352085_4 sulfate reduction K00390,K00860 GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0044424,GO:0044464,GO:0055114 1.8.4.10,1.8.4.8,2.7.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 369.0
LYD2_k127_1352085_5 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 306.0
LYD2_k127_1352085_6 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000001016 241.0
LYD2_k127_1352085_7 sequence-specific DNA binding K03557,K07712 GO:0000018,GO:0000229,GO:0000785,GO:0000786,GO:0000787,GO:0000789,GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001121,GO:0001130,GO:0001131,GO:0001140,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016032,GO:0016070,GO:0018130,GO:0019042,GO:0019045,GO:0019046,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031421,GO:0032359,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044374,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044815,GO:0045892,GO:0045893,GO:0045911,GO:0045934,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000003066 181.0
LYD2_k127_1352085_8 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000005576 142.0
LYD2_k127_1352085_9 transcriptional regulator - - - 0.0000000000000000000009711 100.0
LYD2_k127_1352513_0 RNA secondary structure unwinding K03724 - - 0.0 1324.0
LYD2_k127_1352513_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) K03594,K07052 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 436.0
LYD2_k127_1352513_2 aminotransferase K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 326.0
LYD2_k127_1352513_3 ADP-glyceromanno-heptose 6-epimerase activity K00311 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001476 270.0
LYD2_k127_1352513_4 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002686 244.0
LYD2_k127_1352513_5 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000006123 167.0
LYD2_k127_1352513_6 Autotransporter beta-domain - - - 0.0000001505 64.0
LYD2_k127_1360007_0 denitrification pathway - - - 1.261e-229 716.0
LYD2_k127_1360007_1 metalloendopeptidase activity K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009519 543.0
LYD2_k127_1360007_2 Histone deacetylase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 529.0
LYD2_k127_1360007_3 thiosulfate sulfurtransferase activity K01011,K21028 - 2.8.1.1,2.8.1.11,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 465.0
LYD2_k127_1360007_4 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002054 276.0
LYD2_k127_1360007_5 HemY protein K02498 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000008593 180.0
LYD2_k127_1360007_7 Small metal-binding protein - - - 0.000000000000000000007122 96.0
LYD2_k127_137670_0 Putative modulator of DNA gyrase K03592 - - 7.16e-201 634.0
LYD2_k127_137670_1 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007764 403.0
LYD2_k127_137670_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 359.0
LYD2_k127_137670_3 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000556 284.0
LYD2_k127_137670_5 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000001509 202.0
LYD2_k127_137670_6 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000002129 110.0
LYD2_k127_137670_7 abc-type fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.00000000000000000001176 94.0
LYD2_k127_137670_8 SEC-C Motif Domain Protein - - - 0.0000000002967 71.0
LYD2_k127_137670_9 - - - - 0.000000005023 65.0
LYD2_k127_1380761_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 573.0
LYD2_k127_1380761_1 CDP-archaeol synthase K19664 - 2.7.7.67 0.00000000000000000000000000000007571 131.0
LYD2_k127_1385758_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 1.699e-218 691.0
LYD2_k127_1385758_1 acr, cog1565 K00412,K00971,K02275,K02389,K03177,K17624 - 1.9.3.1,2.7.7.13,3.2.1.97,5.4.99.25 2.934e-204 645.0
LYD2_k127_1385758_2 protein secretion K03116,K03117 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000008132 138.0
LYD2_k127_1385758_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000006379 103.0
LYD2_k127_1385758_4 Rhodopirellula transposase DDE domain - - - 0.00000000002416 67.0
LYD2_k127_139937_0 PhoQ Sensor - - - 6.511e-228 730.0
LYD2_k127_139937_1 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 3.082e-221 698.0
LYD2_k127_139937_2 response regulator K02479,K07685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 316.0
LYD2_k127_139937_3 - K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 296.0
LYD2_k127_139937_6 Cys-tRNA(Pro) hydrolase activity K19055 - - 0.000004038 52.0
LYD2_k127_139937_7 aldehyde-lyase activity K01621 - 4.1.2.22,4.1.2.9 0.000004933 49.0
LYD2_k127_1453283_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07798,K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 429.0
LYD2_k127_1453283_1 silver ion transport K15726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 293.0
LYD2_k127_1453283_2 ABC transporter K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009668 244.0
LYD2_k127_1453283_4 Cys-tRNA(Pro) hydrolase activity K03976,K19055 - - 0.0000000000000000000000000000000000000000711 156.0
LYD2_k127_1453283_5 Saccharopine dehydrogenase K00290 - 1.5.1.7 0.0000000002576 72.0
LYD2_k127_1457265_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 3.263e-274 853.0
LYD2_k127_1457265_1 4Fe-4S dicluster domain K16950 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 406.0
LYD2_k127_1457265_2 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 326.0
LYD2_k127_1457265_4 cellular manganese ion homeostasis - - - 0.00000000000000000004112 91.0
LYD2_k127_145752_0 DNA topoisomerase II activity K03167 - 5.99.1.3 0.0 1007.0
LYD2_k127_145752_1 DNA topoisomerase VI subunit A K03166 - 5.99.1.3 4.345e-222 690.0
LYD2_k127_145752_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 518.0
LYD2_k127_145752_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 506.0
LYD2_k127_145752_4 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000002313 166.0
LYD2_k127_145752_6 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000251 134.0
LYD2_k127_145752_7 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000006098 57.0
LYD2_k127_1458385_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0 1026.0
LYD2_k127_1458385_1 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009021 581.0
LYD2_k127_1458385_10 Flagellar basal body rod FlgEFG protein C-terminal K02396 - - 0.00000000000000000000000000000000000000000000000168 177.0
LYD2_k127_1458385_11 GGDEF domain K13590 - 2.7.7.65 0.0000000000000000000000000000000000000008408 158.0
LYD2_k127_1458385_12 bacterial-type flagellum organization K02398 GO:0000988,GO:0000989,GO:0003674,GO:0008150,GO:0009889,GO:0009892,GO:0010556,GO:0010605,GO:0016989,GO:0019219,GO:0019222,GO:0030162,GO:0031323,GO:0031324,GO:0031326,GO:0032268,GO:0032269,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.00000000000000000000002089 102.0
LYD2_k127_1458385_13 Flagellar rod assembly protein muramidase FlgJ K02395,K08309 - - 0.0000000000000000189 87.0
LYD2_k127_1458385_2 Flagellar basal body rod FlgEFG protein C-terminal K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006208 483.0
LYD2_k127_1458385_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 364.0
LYD2_k127_1458385_4 Sigma-70, region 4 K02405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 351.0
LYD2_k127_1458385_5 Flagellar basal body rod FlgEFG protein C-terminal K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 346.0
LYD2_k127_1458385_6 Cellulose biosynthesis protein BcsQ K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 347.0
LYD2_k127_1458385_7 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 327.0
LYD2_k127_1458385_8 SRP54-type protein, GTPase domain K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002512 258.0
LYD2_k127_1458385_9 bacterial-type flagellum organization K02279,K02386 - - 0.0000000000000000000000000000000000000000000000000000132 199.0
LYD2_k127_1464554_0 efflux transmembrane transporter activity K12340 - - 2.017e-234 736.0
LYD2_k127_1464554_1 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 401.0
LYD2_k127_1464554_2 aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 293.0
LYD2_k127_1477550_0 Cytochrome b/b6/petB K00412 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 319.0
LYD2_k127_1477550_2 aerobic electron transport chain K00425,K08738 - 1.10.3.14 0.000000000000008132 77.0
LYD2_k127_1484214_0 alpha-ribazole phosphatase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.0 1007.0
LYD2_k127_1484214_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 1.181e-209 662.0
LYD2_k127_1484214_2 HAD-hyrolase-like K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 359.0
LYD2_k127_1484214_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 348.0
LYD2_k127_1484214_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 340.0
LYD2_k127_1487147_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00003,K00982,K00990,K06950,K15371 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 0.0 1055.0
LYD2_k127_1487147_1 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000001891 169.0
LYD2_k127_1487147_2 Evidence 2b Function of strongly homologous gene K02584,K12266,K15836,K21009 - - 0.000000000000000000000000000000000000000000008872 166.0
LYD2_k127_1489559_0 AcrB/AcrD/AcrF family - - - 5.118e-277 857.0
LYD2_k127_1489559_1 HlyD family secretion protein K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 590.0
LYD2_k127_1489559_2 domain protein - - - 0.0000000000000000001067 99.0
LYD2_k127_1489559_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000003178 79.0
LYD2_k127_1496230_0 Type II/IV secretion system protein K02454,K02652 - - 4.845e-232 733.0
LYD2_k127_1496230_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 542.0
LYD2_k127_1496230_2 Magnesium transport protein CorA K03284 GO:0000041,GO:0000287,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015087,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0050897,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0055085,GO:0065003,GO:0070838,GO:0071840,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903830 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006369 417.0
LYD2_k127_1496230_3 inositol monophosphate 1-phosphatase activity K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000001268 246.0
LYD2_k127_1496230_5 Transglycosylase SLT domain - - - 0.0000000000000000000000000000005418 128.0
LYD2_k127_1496230_6 TIGRFAM TIGR00725 family protein K06966 - 3.2.2.10 0.000000000000000162 81.0
LYD2_k127_1496352_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 5.823e-267 829.0
LYD2_k127_1496352_1 tRNA-splicing ligase RtcB K14415,K18148 - 6.5.1.3 0.0000000000000000000000000000001145 124.0
LYD2_k127_1496352_2 AIR synthase related protein, C-terminal domain - - - 0.000002841 56.0
LYD2_k127_150208_0 Transcriptional regulator, Crp Fnr family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 376.0
LYD2_k127_150208_1 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000008073 173.0
LYD2_k127_150208_2 Low affinity iron permease - - - 0.0000000000000000000000000000004271 129.0
LYD2_k127_150208_3 Rieske [2Fe-2S] domain - - - 0.0000000000000002952 81.0
LYD2_k127_151447_0 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 572.0
LYD2_k127_151447_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 497.0
LYD2_k127_151447_10 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.00000000000000000000000000000000000000000000002014 177.0
LYD2_k127_151447_11 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000005427 172.0
LYD2_k127_151447_13 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.00001025 51.0
LYD2_k127_151447_2 tRNA processing K04075,K14058,K21947 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:0090304,GO:1901360 2.8.1.15,6.3.4.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 421.0
LYD2_k127_151447_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 285.0
LYD2_k127_151447_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000000000000000000000000000000000000000000005888 232.0
LYD2_k127_151447_5 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 GO:0000096,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0010309,GO:0016491,GO:0016701,GO:0016702,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0051213,GO:0055114,GO:0071704,GO:1901564,GO:1901605 1.13.11.53,1.13.11.54 0.00000000000000000000000000000000000000000000000000000003094 201.0
LYD2_k127_151447_6 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.000000000000000000000000000000000000000000000000000000162 201.0
LYD2_k127_151447_7 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000003499 189.0
LYD2_k127_151447_9 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104,K03741 - 1.20.4.1,3.1.3.48 0.000000000000000000000000000000000000000000000000699 179.0
LYD2_k127_1536997_1 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000002615 207.0
LYD2_k127_1546459_0 Peptidase family M1 domain K08776 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 521.0
LYD2_k127_1546459_1 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000851 79.0
LYD2_k127_1557467_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 6.176e-217 689.0
LYD2_k127_1557467_1 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008489 553.0
LYD2_k127_1557467_10 Transposase K01991,K02557,K07161,K07484 - - 0.0000000000000000000000000000000000000000000000000001984 193.0
LYD2_k127_1557467_2 Evidence 5 No homology to any previously reported sequences K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 524.0
LYD2_k127_1557467_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 419.0
LYD2_k127_1557467_4 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 396.0
LYD2_k127_1557467_5 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 395.0
LYD2_k127_1557467_6 Outer membrane lipoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 286.0
LYD2_k127_1557467_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003709 270.0
LYD2_k127_1557467_8 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005076 263.0
LYD2_k127_156612_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 1.276e-237 738.0
LYD2_k127_156612_1 Histidine kinase K00060,K07777 - 1.1.1.103,2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009736 552.0
LYD2_k127_156612_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008222 438.0
LYD2_k127_156612_4 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000121 231.0
LYD2_k127_156612_5 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000000445 228.0
LYD2_k127_156612_6 response regulator, receiver K02479 - - 0.00000000000000000000000000000000000000000000000000000000134 207.0
LYD2_k127_1607711_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 533.0
LYD2_k127_1607711_1 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 419.0
LYD2_k127_1607711_2 RNA-binding protein - - - 0.000000000009931 68.0
LYD2_k127_1607711_5 - - - - 0.0005538 45.0
LYD2_k127_1621094_0 Multicopper oxidase K00368,K07233,K22349 - 1.16.3.3,1.7.2.1 4.315e-277 878.0
LYD2_k127_1621094_1 amino acid - - - 1.655e-270 844.0
LYD2_k127_1621094_2 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 426.0
LYD2_k127_1621094_5 PFAM Ribbon-helix-helix protein, copG family - - - 0.00000005396 57.0
LYD2_k127_1622938_0 Periplasmic binding protein - - - 6.838e-225 714.0
LYD2_k127_1622938_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 553.0
LYD2_k127_1622938_2 Phage integrase, N-terminal SAM-like domain K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 319.0
LYD2_k127_1622938_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 285.0
LYD2_k127_1622938_4 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001072 249.0
LYD2_k127_1622938_5 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000000000000000000000000000000000000000000000000000000000002242 221.0
LYD2_k127_1622938_6 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000001229 195.0
LYD2_k127_1622938_7 PEGA domain - - - 0.000000000006382 71.0
LYD2_k127_163213_0 carboxylic ester hydrolase activity - - - 3.502e-295 918.0
LYD2_k127_163213_1 amino acid - - - 4.084e-244 761.0
LYD2_k127_163213_2 Outer membrane efflux protein - - - 6.011e-220 694.0
LYD2_k127_163213_3 Arginase family K01480 - 3.5.3.11 2.846e-215 674.0
LYD2_k127_163213_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003814 465.0
LYD2_k127_163213_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004563 424.0
LYD2_k127_163213_6 ROK family K00886 - 2.7.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 289.0
LYD2_k127_163213_7 - - - - 0.0000002848 59.0
LYD2_k127_1633365_0 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 314.0
LYD2_k127_1633365_1 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 286.0
LYD2_k127_1633365_2 Protein of unknown function (DUF1207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008818 277.0
LYD2_k127_1633365_3 Glycosyl Transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002692 258.0
LYD2_k127_1633365_4 Beta-ketoacyl synthase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000002796 206.0
LYD2_k127_1633365_5 dehydratase - - - 0.000000000000000000000000000000002188 134.0
LYD2_k127_1633365_6 xylanase chitin deacetylase K22278 - 3.5.1.104 0.0000000000000000269 92.0
LYD2_k127_1633365_7 Protein of unknown function (DUF1328) - - - 0.00006949 48.0
LYD2_k127_1633365_8 Phosphopantetheine attachment site - - - 0.0001569 48.0
LYD2_k127_1633365_9 oxidation-reduction process - - - 0.0007259 45.0
LYD2_k127_165778_0 Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 2.33e-198 623.0
LYD2_k127_165778_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K01834 - 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 359.0
LYD2_k127_165778_2 cell adhesion K02650 - - 0.000000000000000000000000000000000000000000000000000000000000000000001906 242.0
LYD2_k127_165778_3 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000003628 183.0
LYD2_k127_16617_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 3.646e-265 824.0
LYD2_k127_16617_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00520 - 1.16.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 548.0
LYD2_k127_16617_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 359.0
LYD2_k127_16617_3 Cellulose synthase catalytic subunit (UDP-forming) K00694 - 2.4.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 377.0
LYD2_k127_16617_4 MEKHLA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009731 229.0
LYD2_k127_16617_6 Protein conserved in bacteria K09705 - - 0.0000000000000000000000001817 108.0
LYD2_k127_16617_8 PFAM CBS domain K07182 - - 0.0000000003948 70.0
LYD2_k127_166444_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 1.759e-278 862.0
LYD2_k127_166444_1 Histidyl-tRNA synthetase K02502 - - 0.0000000000000009582 79.0
LYD2_k127_1665833_0 ABC transporter K06020 - 3.6.3.25 0.0 1037.0
LYD2_k127_1665833_1 metallopeptidase activity K03568 - - 3.261e-258 802.0
LYD2_k127_1665833_10 Late embryogenesis abundant protein - - - 0.000000000000000000000000000000000000000000000000000000003258 203.0
LYD2_k127_1665833_11 Transcriptional regulator containing an HTH domain fused to a Zn-ribbon K07743 - - 0.00000000000000000000000000000000000005573 146.0
LYD2_k127_1665833_13 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000001081 101.0
LYD2_k127_1665833_14 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000001335 64.0
LYD2_k127_1665833_16 - - - - 0.000000000837 64.0
LYD2_k127_1665833_2 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069 605.0
LYD2_k127_1665833_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 592.0
LYD2_k127_1665833_4 dTDP-4-dehydrorhamnose reductase activity K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 354.0
LYD2_k127_1665833_5 thiolester hydrolase activity K06889,K07000 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 344.0
LYD2_k127_1665833_6 Alpha/beta hydrolase family K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 334.0
LYD2_k127_1665833_7 Protein of unknown function (DUF1295) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 325.0
LYD2_k127_1665833_8 peptide-methionine (S)-S-oxide reductase activity K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 293.0
LYD2_k127_1665833_9 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000003968 250.0
LYD2_k127_1692934_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1408.0
LYD2_k127_1692934_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 597.0
LYD2_k127_1692934_2 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005294 404.0
LYD2_k127_1692934_3 response regulator K07814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 301.0
LYD2_k127_1692934_4 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000000000000000000000009709 197.0
LYD2_k127_1692934_5 regulation of DNA repair K03565,K19002 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496 2.4.1.337 0.00000000000000000000000002324 115.0
LYD2_k127_1693778_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 3.811e-198 624.0
LYD2_k127_1693778_1 pseudouridine synthase activity K06176 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008409 472.0
LYD2_k127_1693778_2 dimethylargininase activity K00819 GO:0003674,GO:0003824,GO:0016403,GO:0016787,GO:0016810,GO:0016813 2.6.1.13 0.0000000000000000000000000000000000003962 141.0
LYD2_k127_1719539_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 1.179e-265 823.0
LYD2_k127_1719539_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000000000000000000000000001051 228.0
LYD2_k127_1719539_2 Belongs to the citrate synthase family K01647,K01659 - 2.3.3.1,2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000006 217.0
LYD2_k127_1719539_3 amine dehydrogenase activity - - - 0.0000000000000000000000000001625 124.0
LYD2_k127_1719539_4 helix_turn_helix, Lux Regulon - - - 0.00000000000000000002249 100.0
LYD2_k127_1738272_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.181e-270 852.0
LYD2_k127_1738272_1 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 324.0
LYD2_k127_1738272_2 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 324.0
LYD2_k127_1774247_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 306.0
LYD2_k127_1774247_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005681 266.0
LYD2_k127_1774247_2 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000001335 265.0
LYD2_k127_1774247_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000000000000000000000000000000000000000000000000000000008102 237.0
LYD2_k127_1774247_4 Cytochrome c - - - 0.000000000000000000000000000000000000000000004416 168.0
LYD2_k127_1810368_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 385.0
LYD2_k127_1810368_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 318.0
LYD2_k127_1810368_2 Integrase core domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007805 282.0
LYD2_k127_1817896_0 phosphate ABC transporter K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 593.0
LYD2_k127_1817896_1 Binding-protein-dependent transport system inner membrane component K02037,K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 493.0
LYD2_k127_1817896_2 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 387.0
LYD2_k127_1817896_3 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 296.0
LYD2_k127_1817896_4 Phosphate-starvation-inducible E - - - 0.0000000000000000000000000000000000000005231 154.0
LYD2_k127_182141_0 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008678 488.0
LYD2_k127_182141_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 443.0
LYD2_k127_182141_2 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003035 286.0
LYD2_k127_182141_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000007687 137.0
LYD2_k127_1832323_0 silver ion transport K15726 - - 0.0 1575.0
LYD2_k127_1832323_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 536.0
LYD2_k127_1832323_2 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 397.0
LYD2_k127_1832323_4 cation diffusion facilitator family transporter K16264 - - 0.000000009546 57.0
LYD2_k127_1832323_5 cation efflux K16264 - - 0.00000003128 55.0
LYD2_k127_1832323_6 Uncharacterised BCR, YnfA/UPF0060 family - - - 0.00000003427 54.0
LYD2_k127_1838028_0 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009477 451.0
LYD2_k127_1838028_1 Carboxypeptidase regulatory-like domain - - - 0.00001929 46.0
LYD2_k127_186610_0 phosphorelay signal transduction system K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001877 568.0
LYD2_k127_186610_1 Bacterial protein of unknown function (DUF899) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 309.0
LYD2_k127_186610_2 - - - - 0.000000000000000000000000000000000000000000000001076 183.0
LYD2_k127_1891986_0 Type II/IV secretion system protein K02454,K02652 - - 0.0 1236.0
LYD2_k127_1891986_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 3.6e-270 841.0
LYD2_k127_1891986_2 Peptidase family M50 K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 322.0
LYD2_k127_1905597_0 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 603.0
LYD2_k127_1905597_1 Evidence 2b Function of strongly homologous gene K01740,K03430,K05306,K09469 GO:0003674,GO:0003824 2.5.1.49,2.6.1.37,3.11.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 567.0
LYD2_k127_1905597_2 lysyltransferase activity K07027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009883 410.0
LYD2_k127_1905597_3 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 378.0
LYD2_k127_1905597_4 Belongs to the TPP enzyme family K09459 - 4.1.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 342.0
LYD2_k127_1905597_5 lysyltransferase activity K07027 - - 0.00000000000000000000000000000000000003307 145.0
LYD2_k127_1905597_6 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K09459 - 4.1.1.82 0.000000000000000000000000000000000001639 138.0
LYD2_k127_1931504_0 CHAT domain - - - 6.179e-256 811.0
LYD2_k127_1931504_1 hemolysin activation secretion protein - - - 2.424e-203 650.0
LYD2_k127_1931504_2 Animal haem peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 441.0
LYD2_k127_194138_0 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008578 595.0
LYD2_k127_194138_1 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 293.0
LYD2_k127_194138_2 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000002429 214.0
LYD2_k127_194138_3 CsbD-like - - - 0.0000000000001612 73.0
LYD2_k127_194138_5 SMART Transport-associated and nodulation region K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.00002396 52.0
LYD2_k127_1958390_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K02660 - - 6.916e-239 753.0
LYD2_k127_1958390_1 Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation K02232 - 6.3.5.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 441.0
LYD2_k127_1958390_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 304.0
LYD2_k127_1958390_3 ABC transporter K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 302.0
LYD2_k127_1958390_4 cob(I)yrinic acid a,c-diamide adenosyltransferase activity K00798,K13821 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.2.1.88,1.5.5.2,2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004269 277.0
LYD2_k127_1958390_5 cheY-homologous receiver domain K02658 - - 0.00000000000000000000000000000000000000000000000000000000000001216 217.0
LYD2_k127_1958390_6 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000003971 236.0
LYD2_k127_1958390_7 chemotaxis K03408,K03415 - - 0.000000000000000000000000000000001765 136.0
LYD2_k127_1958390_8 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000001195 110.0
LYD2_k127_1962171_1 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000002337 169.0
LYD2_k127_1962171_2 Protein of unknown function (DUF3309) - - - 0.000000000000000007257 83.0
LYD2_k127_1962171_3 BON domain - - - 0.000000000008764 70.0
LYD2_k127_1964010_0 Histidine kinase K07683 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 445.0
LYD2_k127_1964010_1 mannose-1-phosphate guanylyltransferase activity K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 314.0
LYD2_k127_1964010_10 peptidyl-tyrosine sulfation - - - 0.000007611 55.0
LYD2_k127_1964010_2 Carboxysome Shell Carbonic Anhydrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 312.0
LYD2_k127_1964010_3 response regulator K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003979 282.0
LYD2_k127_1964010_4 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000002585 144.0
LYD2_k127_1964010_5 Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000002906 139.0
LYD2_k127_1964010_6 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000006293 126.0
LYD2_k127_1964010_7 reversible hydration of carbon dioxide - - - 0.000000000000000000000005872 106.0
LYD2_k127_1964010_8 COG0659 Sulfate permease and related transporters (MFS superfamily) - - - 0.0000000000000000001469 96.0
LYD2_k127_1964010_9 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000001378 53.0
LYD2_k127_1974776_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 474.0
LYD2_k127_1974776_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 454.0
LYD2_k127_1974776_10 glycosyl transferase - - - 0.0000000000000000000000000000000000000000004046 181.0
LYD2_k127_1974776_11 PFAM methyltransferase - - - 0.000000000000000000000007289 112.0
LYD2_k127_1974776_12 PFAM polysaccharide biosynthesis protein - - - 0.00000000000000000000007168 113.0
LYD2_k127_1974776_13 PFAM Methyltransferase type 11 - - - 0.000000000000000000001049 105.0
LYD2_k127_1974776_14 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000002898 101.0
LYD2_k127_1974776_15 Methyltransferase domain - - - 0.000000000003151 78.0
LYD2_k127_1974776_2 Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 300.0
LYD2_k127_1974776_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001362 299.0
LYD2_k127_1974776_4 LmbE homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005605 269.0
LYD2_k127_1974776_5 WbqC-like protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001486 260.0
LYD2_k127_1974776_6 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000006072 238.0
LYD2_k127_1974776_7 - - - - 0.00000000000000000000000000000000000000000000000000000000002361 225.0
LYD2_k127_1974776_8 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000000000000000000000000000000000000000000003362 188.0
LYD2_k127_1974776_9 glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000000000000000000000000001945 204.0
LYD2_k127_19755_0 Cation efflux family K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 469.0
LYD2_k127_19755_1 cobalamin synthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009983 433.0
LYD2_k127_19755_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 315.0
LYD2_k127_19755_3 Acid phosphatase homologues K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000008749 224.0
LYD2_k127_1977256_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 544.0
LYD2_k127_1977256_1 16S rRNA methyltransferase RsmB/F K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004709 471.0
LYD2_k127_1977256_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 416.0
LYD2_k127_1977256_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 330.0
LYD2_k127_1977256_5 Protein of unknown function (DUF1328) - - - 0.0000000003744 61.0
LYD2_k127_1977256_6 - - - - 0.000000003151 59.0
LYD2_k127_1977441_0 radical SAM domain protein - - - 1.399e-296 926.0
LYD2_k127_1977441_1 Uncharacterised BCR, YnfA/UPF0060 family - - - 0.0000000000000000000000000000000000000000000000001651 178.0
LYD2_k127_1977441_2 protein disulfide oxidoreductase activity K03673 - - 0.00000000000000000000000000002103 119.0
LYD2_k127_1977441_3 Flagellar basal body rod FlgEFG protein C-terminal K02388 - - 0.00000000000000000000001632 105.0
LYD2_k127_1978851_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0001666,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009605,GO:0009607,GO:0009628,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016879,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0019674,GO:0034355,GO:0034641,GO:0034654,GO:0036293,GO:0043094,GO:0043173,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044403,GO:0044419,GO:0044464,GO:0046483,GO:0046496,GO:0047280,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0055086,GO:0070482,GO:0071704,GO:0071944,GO:0072524,GO:0072525,GO:0075136,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008445 283.0
LYD2_k127_1978851_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281,K12132 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008936,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0017144,GO:0018130,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0030145,GO:0034641,GO:0034654,GO:0043094,GO:0043167,GO:0043169,GO:0043173,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.11.1,3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000001395 241.0
LYD2_k127_1978851_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K12263 - - 0.0000000000000000000000000000000000000000000007734 169.0
LYD2_k127_199291_0 chaperone-mediated protein complex assembly K00373,K17052 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - 4.118e-198 618.0
LYD2_k127_199291_1 protein complex oligomerization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 536.0
LYD2_k127_199291_2 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 341.0
LYD2_k127_199291_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 304.0
LYD2_k127_199291_4 4 iron, 4 sulfur cluster binding K02573 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001217 281.0
LYD2_k127_199291_5 photoreceptor activity - - - 0.00000000000000000000000000001319 137.0
LYD2_k127_199291_6 molybdopterin cofactor binding K00370,K10700,K16964,K17050 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.17.99.2,1.7.5.1,1.8.2.4 0.00000000001568 64.0
LYD2_k127_199291_8 CHASE3 domain - - - 0.00002525 57.0
LYD2_k127_2001950_0 The M ring may be actively involved in energy transduction K02409 - - 2.154e-228 717.0
LYD2_k127_2001950_1 Bacterial regulatory protein, Fis family K10943 - - 5.639e-213 670.0
LYD2_k127_2001950_10 phosphorelay signal transduction system K02411,K03223,K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002309 282.0
LYD2_k127_2001950_11 Belongs to the flagella basal body rod proteins family K02388 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001111 241.0
LYD2_k127_2001950_12 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000002112 187.0
LYD2_k127_2001950_13 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000000000001134 181.0
LYD2_k127_2001950_14 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.0000000000000000000000000000000000000000000004253 172.0
LYD2_k127_2001950_15 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.0000000000000000000000000000000000000003406 152.0
LYD2_k127_2001950_16 Role in flagellar biosynthesis K02420 - - 0.00000000000000000000000000005979 117.0
LYD2_k127_2001950_17 PFAM MgtE intracellular K02383 - - 0.0000000000000000000000000002851 123.0
LYD2_k127_2001950_18 Flagellar hook-basal body complex protein FliE K02408 - - 0.00000000000000000000007406 101.0
LYD2_k127_2001950_19 flagellar hook K02389 - - 0.00000000000000000003485 93.0
LYD2_k127_2001950_2 ATP synthase alpha/beta family, beta-barrel domain K02412 - 3.6.3.14 1.707e-201 636.0
LYD2_k127_2001950_20 flagellar K02418,K02419 - - 0.000000000000000734 82.0
LYD2_k127_2001950_3 phosphorelay signal transduction system K10941 - - 9.602e-195 619.0
LYD2_k127_2001950_4 Flagellar basal body protein FlaE K02390 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 535.0
LYD2_k127_2001950_5 Flagellar motor switch protein FliM K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 447.0
LYD2_k127_2001950_6 FliG middle domain K02410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 434.0
LYD2_k127_2001950_7 phosphorelay sensor kinase activity K07708,K07710,K10942 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 434.0
LYD2_k127_2001950_8 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 387.0
LYD2_k127_2001950_9 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 353.0
LYD2_k127_2006170_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.15e-295 921.0
LYD2_k127_2006170_1 prohibitin homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003141 484.0
LYD2_k127_2006170_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 485.0
LYD2_k127_2006170_3 peptidyl-lysine modification to peptidyl-hypusine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009631 485.0
LYD2_k127_2006170_4 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 304.0
LYD2_k127_2006170_5 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002517 243.0
LYD2_k127_2006170_6 SprT-like family K02742 - - 0.0000000000000000000000000000000000000000000000000000000000000002257 227.0
LYD2_k127_2006170_7 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000005331 194.0
LYD2_k127_2006170_8 cellular response to DNA damage stimulus K07340 - - 0.00000000000000000000000000000000000000000000001683 174.0
LYD2_k127_2008528_0 Sulfate permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
LYD2_k127_2008528_1 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000009376 214.0
LYD2_k127_2036812_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00382 - 1.8.1.4 5.37e-211 665.0
LYD2_k127_2036812_1 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000000000000007252 231.0
LYD2_k127_2037149_0 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 494.0
LYD2_k127_2037149_1 N-terminal domain of oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006993 284.0
LYD2_k127_2037149_2 Flavodoxin domain K00230 - 1.3.5.3 0.000000000000000000000000000000000000000000000000002147 187.0
LYD2_k127_2037149_3 - - - - 0.00000000000000000000003019 110.0
LYD2_k127_2037149_5 - - - - 0.000000000000009035 78.0
LYD2_k127_2040302_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1055.0
LYD2_k127_2040302_1 B3/4 domain K01890 - 6.1.1.20 2.775e-242 762.0
LYD2_k127_2040302_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 475.0
LYD2_k127_2040302_3 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 420.0
LYD2_k127_2040302_4 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 320.0
LYD2_k127_2040302_5 Belongs to the MIP aquaporin (TC 1.A.8) family K02440,K06188 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009345 310.0
LYD2_k127_2040302_6 Translation initiation factor IF-3, C-terminal domain K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 293.0
LYD2_k127_2040302_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000003268 198.0
LYD2_k127_2040302_8 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000002521 80.0
LYD2_k127_2047511_0 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 541.0
LYD2_k127_2047511_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 303.0
LYD2_k127_2058530_0 methyltransferase K16129 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 376.0
LYD2_k127_2058530_1 RNA recognition motif - - - 0.00000000000000000000000000000000000000000000516 167.0
LYD2_k127_2086801_0 belongs to the flavoprotein pyridine nucleotide cytochrome reductase family K00326 GO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005886,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016491,GO:0016651,GO:0016653,GO:0019867,GO:0022900,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901363 1.6.2.2 0.00000000000000000000000000000000000000000000000002024 188.0
LYD2_k127_2086801_1 Protein of unknown function (DUF1328) - - - 0.00000000003403 64.0
LYD2_k127_208700_0 Protein involved in outer membrane biogenesis K07290 - - 0.0 1268.0
LYD2_k127_208700_1 Metallopeptidase family M24 K01262 - 3.4.11.9 5.426e-197 619.0
LYD2_k127_208700_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000002226 241.0
LYD2_k127_208700_4 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000006571 56.0
LYD2_k127_2088253_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1080.0
LYD2_k127_2088253_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 5.869e-245 761.0
LYD2_k127_2088253_10 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 295.0
LYD2_k127_2088253_11 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003747 287.0
LYD2_k127_2088253_12 signal-transduction protein containing cAMP-binding and CBS domains K02342,K05847,K07182 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000008358 217.0
LYD2_k127_2088253_2 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 8.304e-214 675.0
LYD2_k127_2088253_3 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 2.834e-204 645.0
LYD2_k127_2088253_4 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 531.0
LYD2_k127_2088253_5 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 486.0
LYD2_k127_2088253_6 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 420.0
LYD2_k127_2088253_7 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009496 387.0
LYD2_k127_2088253_8 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 376.0
LYD2_k127_2088253_9 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009261 310.0
LYD2_k127_2103358_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1337.0
LYD2_k127_2103358_1 Nucleotidyl transferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 471.0
LYD2_k127_2103358_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 349.0
LYD2_k127_2103358_3 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000000000000000000000000000000000000000000000001468 210.0
LYD2_k127_2103358_4 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.000000000000000000000000000000000000000000000001696 174.0
LYD2_k127_2115528_0 thymidylate synthase (FAD) activity K03465 - 2.1.1.148 1.921e-264 820.0
LYD2_k127_2115528_1 Histidyl-tRNA synthetase K01892 - 6.1.1.21 2.615e-197 622.0
LYD2_k127_2115528_2 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 439.0
LYD2_k127_2115528_3 Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE - - - 0.000000000000000000000000000000000000000001944 157.0
LYD2_k127_2115528_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000006087 137.0
LYD2_k127_2134037_0 p-loop domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007117 466.0
LYD2_k127_2134037_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004017 253.0
LYD2_k127_2134037_2 chlorophyll binding K03640 - - 0.00000000000000000000000000000000000000000000000000000000000000002201 233.0
LYD2_k127_2134037_3 PFAM nuclease (SNase domain protein) - - - 0.0000000000000000000000000006901 119.0
LYD2_k127_2134037_4 Rhodopirellula transposase DDE domain - - - 0.00000000000000002025 83.0
LYD2_k127_2134037_5 PFAM nuclease (SNase domain protein) - - - 0.00009106 46.0
LYD2_k127_2143423_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 613.0
LYD2_k127_2143423_1 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000007717 187.0
LYD2_k127_2143423_2 deoxyhypusine monooxygenase activity - - - 0.000000000000111 74.0
LYD2_k127_215433_0 protein catabolic process K13527 GO:0000302,GO:0000502,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0010499,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019941,GO:0022623,GO:0022624,GO:0030163,GO:0030312,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042802,GO:0043170,GO:0043335,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044424,GO:0044464,GO:0044877,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070628,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097366,GO:0140030,GO:0140035,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902494,GO:1905368,GO:1905369 - 8.912e-269 833.0
LYD2_k127_215433_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 463.0
LYD2_k127_215433_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000000000000000000000002156 200.0
LYD2_k127_215433_3 DNA-directed DNA polymerase activity K02347,K03581,K04477 - 3.1.11.5 0.0000000000000000000000000000000001415 136.0
LYD2_k127_215433_4 ThiS family K03154 - - 0.0000000000000000001871 89.0
LYD2_k127_216358_0 Belongs to the pseudouridine synthase RsuA family K06178,K06181,K06182 - 5.4.99.20,5.4.99.21,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004556 289.0
LYD2_k127_216358_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07285 - - 0.000000000000000000000000000000000000000000004135 172.0
LYD2_k127_2174128_0 PFAM Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 362.0
LYD2_k127_2174128_1 ferroxidase activity K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003294 272.0
LYD2_k127_2174128_2 Helix-hairpin-helix domain K04477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001945 275.0
LYD2_k127_2174128_3 Macro domain - - - 0.000000000000000000000000000000000000000000000000000000000000001493 221.0
LYD2_k127_2174128_4 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000005864 116.0
LYD2_k127_2187408_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 494.0
LYD2_k127_2189027_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009516 499.0
LYD2_k127_2189027_1 Putative modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 321.0
LYD2_k127_2190771_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 3.824e-268 828.0
LYD2_k127_2190771_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 2.703e-201 630.0
LYD2_k127_2190771_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 608.0
LYD2_k127_220738_0 Periplasmic binding protein K02016 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 332.0
LYD2_k127_220738_1 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005932 276.0
LYD2_k127_2232888_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030955,GO:0031004,GO:0031224,GO:0031226,GO:0031420,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 1.804e-270 842.0
LYD2_k127_2232888_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.000000000000000000000000000000000000000000000000000000137 199.0
LYD2_k127_2234305_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 6.075e-259 807.0
LYD2_k127_2234305_1 - - - - 0.00000000000000000000000000000002249 129.0
LYD2_k127_2234305_2 PFAM Cation H exchanger K03316 - - 0.0000003203 51.0
LYD2_k127_2237056_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 487.0
LYD2_k127_2237056_1 Peptidase C26 K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 334.0
LYD2_k127_2237056_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 310.0
LYD2_k127_2241207_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 3.584e-245 762.0
LYD2_k127_2241207_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005921 512.0
LYD2_k127_2241207_2 Pfam:DUF989 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 335.0
LYD2_k127_2241207_3 - - - - 0.00000000000000000000000000000000000000000000000000004517 188.0
LYD2_k127_2241207_4 Ferredoxin K04755 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0022900,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0071840 - 0.000000000000000000000000000000000000000000000000004191 185.0
LYD2_k127_2241207_5 Belongs to the HesB IscA family K15724 - - 0.00000000000000001131 83.0
LYD2_k127_2266552_0 dicarboxylic acid transport K03309 - - 5.461e-214 672.0
LYD2_k127_2266555_0 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000000000000000000000003783 118.0
LYD2_k127_2266555_1 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000001493 84.0
LYD2_k127_2266555_3 - - - - 0.0004488 47.0
LYD2_k127_2275052_0 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000003499 192.0
LYD2_k127_2275052_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K12263 - - 0.00000000000000000000002641 103.0
LYD2_k127_2275052_3 Helix-hairpin-helix motif - - - 0.00000000000002433 76.0
LYD2_k127_2275052_5 - - - - 0.0000008939 57.0
LYD2_k127_2275052_6 Helix-hairpin-helix motif - - - 0.000007511 51.0
LYD2_k127_2292514_0 Aminotransferase class I and II K14261 - - 5.303e-236 733.0
LYD2_k127_2292514_1 Homoserine dehydrogenase K00003 - 1.1.1.3 3.799e-217 680.0
LYD2_k127_2292514_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 591.0
LYD2_k127_231083_0 NADH-quinone oxidoreductase K00341,K05568,K12139 - 1.6.5.3 0.0 1064.0
LYD2_k127_231083_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00342,K05575 - 1.6.5.3 5.104e-291 898.0
LYD2_k127_231083_2 Molydopterin dinucleotide binding domain K00302,K10814 - 1.4.99.5,1.5.3.1 7.998e-273 848.0
LYD2_k127_231083_3 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 1.006e-262 816.0
LYD2_k127_231083_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 375.0
LYD2_k127_231083_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000002238 247.0
LYD2_k127_231083_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000000000159 167.0
LYD2_k127_2312573_0 RNase_H superfamily K07502 - - 0.00000000000000000000000000000000000000000000000000000000005042 214.0
LYD2_k127_2312573_1 - - - - 0.0000000000000000000000000000000000000007724 155.0
LYD2_k127_2312573_2 Protein of unknown function DUF72 - - - 0.0000005513 51.0
LYD2_k127_2312573_3 PFAM nuclease (SNase domain protein) - - - 0.000002092 49.0
LYD2_k127_2344064_0 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002021 287.0
LYD2_k127_2344064_1 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000003086 194.0
LYD2_k127_2344064_2 PFAM blue (type 1) copper domain protein K00368 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.2.1 0.00000000000000000000000000000000000000000003524 165.0
LYD2_k127_234732_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 524.0
LYD2_k127_234732_1 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 354.0
LYD2_k127_234732_2 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000008382 216.0
LYD2_k127_234732_3 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000001843 161.0
LYD2_k127_234732_4 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000007276 147.0
LYD2_k127_234732_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000009479 83.0
LYD2_k127_23589_0 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 1.9e-215 675.0
LYD2_k127_23589_1 Glycosyl transferase, family 2 K21349 - 2.4.1.268 6.136e-199 630.0
LYD2_k127_23589_2 Sigma-54 interaction domain K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 425.0
LYD2_k127_23589_3 transmembrane transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001111 261.0
LYD2_k127_23589_4 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000005845 177.0
LYD2_k127_23589_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000003495 181.0
LYD2_k127_23589_6 phosphorelay signal transduction system - - - 0.00000000000000000000001162 104.0
LYD2_k127_23589_7 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02483 - - 0.0001261 49.0
LYD2_k127_236638_0 Bacterial regulatory protein, Fis family K02481,K07713,K07714 - - 5.472e-256 794.0
LYD2_k127_236638_1 phosphorelay sensor kinase activity K02038,K02282,K07018,K07315 - 3.1.3.3 2.231e-212 710.0
LYD2_k127_236638_11 - - - - 0.00000000000000000000000000000000000000000000000000005535 190.0
LYD2_k127_236638_12 protein serine/threonine phosphatase activity K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000003757 187.0
LYD2_k127_236638_13 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000002159 151.0
LYD2_k127_236638_14 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000019 139.0
LYD2_k127_236638_15 Protein of unknown function (DUF507) - - - 0.00000000000000000000000000003328 118.0
LYD2_k127_236638_16 Protein of unknown function (DUF507) - - - 0.000000000000000000000002993 104.0
LYD2_k127_236638_3 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 385.0
LYD2_k127_236638_4 response regulator K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 359.0
LYD2_k127_236638_5 RNase_H superfamily K07502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 345.0
LYD2_k127_236638_7 Pfam:DUF955 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009198 306.0
LYD2_k127_236638_8 AhpC/TSA family K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000001455 244.0
LYD2_k127_236638_9 Cyclophilin-like K09143 - - 0.00000000000000000000000000000000000000000000000000000008012 199.0
LYD2_k127_2375465_0 Mitochondrial small ribosomal subunit Rsm22 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 367.0
LYD2_k127_2375465_1 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000007238 202.0
LYD2_k127_238106_0 PFAM peptidase S15 K06978 - - 0.0 1026.0
LYD2_k127_238106_1 ubiquitin protein ligase binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009881 269.0
LYD2_k127_2384828_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 450.0
LYD2_k127_2384828_1 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 420.0
LYD2_k127_2400193_0 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 381.0
LYD2_k127_2400193_1 thiolester hydrolase activity K06889,K07397 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 303.0
LYD2_k127_2400193_2 cellulase activity K20276 - - 0.00000000000000000003148 104.0
LYD2_k127_2440888_0 HTH-like domain - - - 0.00000000000000000000000003571 110.0
LYD2_k127_2440888_1 PFAM nuclease (SNase domain protein) - - - 0.0001589 49.0
LYD2_k127_249630_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1317.0
LYD2_k127_249630_1 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 4.889e-301 932.0
LYD2_k127_249630_10 protein flavinylation K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 404.0
LYD2_k127_249630_11 shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009893 342.0
LYD2_k127_249630_12 FMN binding K19339,K19343 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 302.0
LYD2_k127_249630_13 ferroxidase activity K03594 GO:0003674,GO:0003824,GO:0004322,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0016020,GO:0016491,GO:0016722,GO:0016724,GO:0019725,GO:0030003,GO:0033212,GO:0033214,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 292.0
LYD2_k127_249630_15 bacteriocin transport K03561,K03562 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000002752 211.0
LYD2_k127_249630_16 RDD family - - - 0.000000000000000000000000000000000000000000000000000006366 193.0
LYD2_k127_249630_18 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000694 122.0
LYD2_k127_249630_2 thiamine transport K02011 - - 2.29e-238 746.0
LYD2_k127_249630_20 biopolymer transport protein K03559 - - 0.000000000000000000003713 98.0
LYD2_k127_249630_21 Belongs to the Fur family K03711 - - 0.00000000000001089 73.0
LYD2_k127_249630_22 TonB C terminal K03832 - - 0.0000002681 62.0
LYD2_k127_249630_23 - - - - 0.000004404 50.0
LYD2_k127_249630_3 Actin K03569 - - 2.618e-203 641.0
LYD2_k127_249630_4 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 1.786e-194 613.0
LYD2_k127_249630_5 sister chromatid segregation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 549.0
LYD2_k127_249630_6 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464 537.0
LYD2_k127_249630_7 ATPase activity K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 517.0
LYD2_k127_249630_8 iron ion homeostasis K02012 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 513.0
LYD2_k127_249630_9 DNA recombination-mediator protein A K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 408.0
LYD2_k127_2533131_0 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 498.0
LYD2_k127_2540659_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008386 559.0
LYD2_k127_2540659_1 Fructose-1-6-bisphosphatase, N-terminal domain K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 369.0
LYD2_k127_2540659_2 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008597 265.0
LYD2_k127_2543609_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 8.074e-314 968.0
LYD2_k127_2543609_1 long-chain fatty acid transporting porin activity K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 496.0
LYD2_k127_2543609_2 Uncharacterized protein family, UPF0114 K03535 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 291.0
LYD2_k127_2543609_3 Product type r regulator K02282 - - 0.00000000000000000000000000000000000000000000000000000000001846 215.0
LYD2_k127_2543609_4 SMART PAS domain containing protein - - - 0.00000000000000000000000000000000000000000000000006259 193.0
LYD2_k127_2543609_5 Acyl-homoserine-lactone synthase K13060,K13061,K18096,K20248,K20249,K20250 - 2.3.1.184,2.3.1.228,2.3.1.229 0.00000000000000000000000000000000000000001157 162.0
LYD2_k127_2543609_6 Autoinducer binding domain K20334 - - 0.00000000000000000000000000000000004817 144.0
LYD2_k127_2543609_7 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000005502 125.0
LYD2_k127_2543609_8 Histidine kinase K07682 GO:0000166,GO:0000287,GO:0001666,GO:0003032,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005509,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0009593,GO:0009628,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0019825,GO:0019826,GO:0020037,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0036293,GO:0040007,GO:0042165,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0046872,GO:0046906,GO:0048037,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0070025,GO:0070026,GO:0070482,GO:0070483,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.13.3 0.00000000000000000000002133 114.0
LYD2_k127_2543609_9 Pfam Response regulator receiver - - - 0.0000001693 59.0
LYD2_k127_2554671_0 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 5.259e-205 646.0
LYD2_k127_2554671_1 long-chain fatty acid transporting porin activity K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 544.0
LYD2_k127_2554671_10 rRNA binding K00185,K02967 - - 0.00000253 56.0
LYD2_k127_2554671_2 chlorophyll binding K02051,K03286 - - 0.00000000000000000000000000000000000000000000000000000008541 205.0
LYD2_k127_2554671_3 PFAM Shikimate quinate 5-dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000001639 206.0
LYD2_k127_2554671_4 rRNA binding K00185,K02967 - - 0.000000000000000000000000000000000000000000008049 179.0
LYD2_k127_2554671_5 chlorophyll binding K02051,K03286 - - 0.0000000000000000000000000000000000000000009194 170.0
LYD2_k127_2554671_6 - - - - 0.0000000000000001443 82.0
LYD2_k127_2554671_7 His Kinase A (phosphoacceptor) domain - - - 0.000000000000002254 84.0
LYD2_k127_2554671_9 WD40-like Beta Propeller Repeat - - - 0.0000007749 61.0
LYD2_k127_2562169_0 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 539.0
LYD2_k127_2562169_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 506.0
LYD2_k127_2562169_2 PFAM ABC transporter K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 457.0
LYD2_k127_2562169_3 (ABC) transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 420.0
LYD2_k127_2562169_4 PFAM secretion protein HlyD family protein K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004794 395.0
LYD2_k127_2562169_5 DNA polymerase X family K02347 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 300.0
LYD2_k127_2562169_6 Adenosine specific kinase K09129 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008663 251.0
LYD2_k127_2562169_7 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000001239 179.0
LYD2_k127_258106_0 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 449.0
LYD2_k127_258106_1 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 334.0
LYD2_k127_258106_2 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002973 254.0
LYD2_k127_258106_3 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000001863 185.0
LYD2_k127_2581638_0 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 467.0
LYD2_k127_2581638_1 transmembrane transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 380.0
LYD2_k127_2581638_2 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000006614 233.0
LYD2_k127_2581638_4 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00520 - 1.16.1.1 0.00000000000000000000000000000000004084 134.0
LYD2_k127_2581752_0 DNA integration K14059 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 284.0
LYD2_k127_2581752_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000008933 229.0
LYD2_k127_2581752_2 Lipase (class 3) K01046 - 3.1.1.3 0.00000000000000000000000000000000000000000000000000000009912 205.0
LYD2_k127_2581752_3 PFAM nuclease (SNase domain protein) - - - 0.0000000000000000000000000000001045 130.0
LYD2_k127_2581752_5 Endonuclease I - - - 0.00000463 57.0
LYD2_k127_2613944_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 562.0
LYD2_k127_2613944_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 347.0
LYD2_k127_2613944_2 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000000001638 236.0
LYD2_k127_2613944_3 Protein conserved in bacteria K11719 - - 0.00000000000000000000000000000000000000000000000000000000000000000001825 237.0
LYD2_k127_2613944_4 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000002488 205.0
LYD2_k127_2613944_5 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000001518 204.0
LYD2_k127_2613944_6 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000001527 139.0
LYD2_k127_2613944_7 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000003009 117.0
LYD2_k127_2613944_8 OstA-like protein K09774 - - 0.000000000000000000001548 100.0
LYD2_k127_2613944_9 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000006282 71.0
LYD2_k127_262128_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2495.0
LYD2_k127_262128_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1661.0
LYD2_k127_262128_10 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000001915 70.0
LYD2_k127_262128_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1242.0
LYD2_k127_262128_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 459.0
LYD2_k127_262128_4 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 391.0
LYD2_k127_262128_5 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006177 324.0
LYD2_k127_262128_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001141 258.0
LYD2_k127_262128_7 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000003298 233.0
LYD2_k127_262128_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000006281 219.0
LYD2_k127_262128_9 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000000000000001023 89.0
LYD2_k127_2627559_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15725 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009255 581.0
LYD2_k127_2627559_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 454.0
LYD2_k127_2627559_10 Animal haem peroxidase - - - 0.0000000000000000002438 90.0
LYD2_k127_2627559_12 Macro domain - - - 0.0000007365 52.0
LYD2_k127_2627559_13 Animal haem peroxidase - - - 0.000002578 49.0
LYD2_k127_2627559_14 Animal haem peroxidase - - - 0.000005945 49.0
LYD2_k127_2627559_2 Arsenical pump membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007173 442.0
LYD2_k127_2627559_3 signal-transduction protein containing cAMP-binding and CBS domains K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008357 357.0
LYD2_k127_2627559_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 332.0
LYD2_k127_2627559_5 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 313.0
LYD2_k127_2627559_6 Animal haem peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000008942 217.0
LYD2_k127_2627559_8 transposase activity K07483,K07497 - - 0.000000000000000000000000000000000000000002238 157.0
LYD2_k127_2627559_9 Animal haem peroxidase - - - 0.0000000000000000000107 94.0
LYD2_k127_2628773_0 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001841 274.0
LYD2_k127_2628773_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000006243 185.0
LYD2_k127_2637203_0 aerobic electron transport chain K00425,K08738 - 1.10.3.14 2.007e-245 763.0
LYD2_k127_2637203_1 Cytochrome c K17052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 320.0
LYD2_k127_2637203_2 oxidoreductase activity, acting on diphenols and related substances as donors K00240,K03886 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000003539 250.0
LYD2_k127_264510_0 (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 349.0
LYD2_k127_264510_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000001763 253.0
LYD2_k127_264510_3 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.0000000000000000000000000003843 114.0
LYD2_k127_2645677_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 3.551e-281 875.0
LYD2_k127_2645677_1 TIGRFAM ABC transporter, urea, ATP-binding protein, UrtD K11962 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 317.0
LYD2_k127_2645677_2 TIGRFAM urea ABC transporter, ATP-binding protein UrtE K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001167 252.0
LYD2_k127_2645677_3 urea catabolic process K01430 - 3.5.1.5 0.000000000000000000000000000000000000000000106 160.0
LYD2_k127_2645677_4 Belongs to the urease K01429,K14048 - 3.5.1.5 0.00000000000000000000000000000000000000003134 157.0
LYD2_k127_2645677_5 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.0000000000000001257 88.0
LYD2_k127_2657413_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1301.0
LYD2_k127_2657413_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 1.552e-279 867.0
LYD2_k127_2657413_2 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 2.371e-267 834.0
LYD2_k127_2657413_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 554.0
LYD2_k127_2657413_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005002 484.0
LYD2_k127_2657413_5 Preprotein translocase subunit K03210 - - 0.00000000000000000000000000000000001645 138.0
LYD2_k127_2657447_0 Aminotransferase class I and II K10206 - 2.6.1.83 1.088e-233 724.0
LYD2_k127_2657447_1 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 445.0
LYD2_k127_2657447_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008007 357.0
LYD2_k127_2657447_3 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001005 256.0
LYD2_k127_2657447_4 Protein conserved in bacteria K16785 - - 0.000000000000000000000000000000000000000000000000009284 182.0
LYD2_k127_2659612_0 4 iron, 4 sulfur cluster binding K00113,K00176,K05524,K13795,K13796 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0044464,GO:0045333,GO:0046872,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.1.5.3,1.2.7.3 2.056e-209 657.0
LYD2_k127_2659612_1 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000006208 174.0
LYD2_k127_2659612_2 Protein of unknown function (DUF3501) - - - 0.00000000000000000000002342 101.0
LYD2_k127_2661663_0 ATP-grasp domain K01905,K22224 - 6.2.1.13 5.847e-278 873.0
LYD2_k127_2661663_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000001111 228.0
LYD2_k127_2661663_2 Cytochrome c K00406 - - 0.00000000000000005855 86.0
LYD2_k127_2661663_3 Cytochrome c K02305,K17223 - - 0.000000004148 57.0
LYD2_k127_2662964_0 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 535.0
LYD2_k127_2662964_1 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 323.0
LYD2_k127_2662964_2 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000009856 216.0
LYD2_k127_2662964_3 Evidence 2b Function of strongly homologous gene K02584,K12266,K15836,K21009 - - 0.000000000000000000000000000000000005823 139.0
LYD2_k127_2686249_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 533.0
LYD2_k127_2686249_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 535.0
LYD2_k127_2686249_2 Cation transporter/ATPase, N-terminus - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613 301.0
LYD2_k127_2701756_0 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003421 274.0
LYD2_k127_2701756_1 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000008073 173.0
LYD2_k127_2701756_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000001519 149.0
LYD2_k127_2701756_3 FG-GAP repeat - - - 0.00000000000000000000000000003375 122.0
LYD2_k127_2701756_4 PFAM nuclease (SNase domain protein) - - - 0.0000000000000000001822 91.0
LYD2_k127_2701756_5 Leucine carboxyl methyltransferase - - - 0.00000000000002562 84.0
LYD2_k127_2701756_6 domain protein K20276 - - 0.00006572 54.0
LYD2_k127_2703576_0 Cytochrome c - - - 5.736e-213 668.0
LYD2_k127_2703576_1 PFAM Peptidase family M48 - - - 0.0000000000000000001207 94.0
LYD2_k127_2705743_0 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 360.0
LYD2_k127_2705743_1 phosphatase - - - 0.0000000000000000000000000000000000004429 145.0
LYD2_k127_2713363_0 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 381.0
LYD2_k127_2713363_1 peroxidase activity K09162 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016701,GO:0016702,GO:0042597,GO:0044464,GO:0050587,GO:0051213,GO:0055114 1.13.11.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 317.0
LYD2_k127_2713363_2 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000001539 71.0
LYD2_k127_2732824_0 Major facilitator Superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 484.0
LYD2_k127_2740063_0 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 466.0
LYD2_k127_2740063_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 436.0
LYD2_k127_2740063_10 Transcription termination factor nusG - - - 0.000000000000000000000000000000000000000000000009527 177.0
LYD2_k127_2740063_11 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000003999 178.0
LYD2_k127_2740063_12 Winged helix-turn-helix DNA-binding - - - 0.0000000000000000000000000000000000005017 146.0
LYD2_k127_2740063_13 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.00000000000000000000000000000000003118 149.0
LYD2_k127_2740063_14 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000867 113.0
LYD2_k127_2740063_15 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000003117 81.0
LYD2_k127_2740063_2 biosynthesis glycosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 402.0
LYD2_k127_2740063_3 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 393.0
LYD2_k127_2740063_4 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009677 367.0
LYD2_k127_2740063_5 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007234 318.0
LYD2_k127_2740063_6 Glycosyl transferase, family 2 - GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 297.0
LYD2_k127_2740063_7 biosynthesis glycosyltransferase K12984 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008049 265.0
LYD2_k127_2740063_8 Glycosyl transferase, family 2 K20444 - - 0.000000000000000000000000000000000000000000000000000000000008499 219.0
LYD2_k127_2740063_9 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000000000002204 180.0
LYD2_k127_2774131_0 Protein involved in outer membrane biogenesis - - - 2.205e-233 751.0
LYD2_k127_2774131_1 Transposase (IS116 IS110 IS902 family) - - - 0.0000000000000000000000000000000000000000000000000000005122 201.0
LYD2_k127_2774131_3 PFAM transposase IS3 IS911 family protein K07497 - - 0.000000000000000000000001165 110.0
LYD2_k127_2774131_4 Elements of external origin K07497 - - 0.00000000000000000000002831 101.0
LYD2_k127_2774131_5 transposition K07497 - - 0.0000000000009922 68.0
LYD2_k127_2775654_0 phosphorelay signal transduction system K02535 - 3.5.1.108 0.00000000000000000000000000000000042 135.0
LYD2_k127_2775654_2 - - - - 0.000000000000000000006626 99.0
LYD2_k127_2796112_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005065 537.0
LYD2_k127_2796112_1 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009442 456.0
LYD2_k127_2796112_2 peroxiredoxin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 319.0
LYD2_k127_2796112_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000008523 257.0
LYD2_k127_2796112_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K00652,K01935 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004141,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017076,GO:0017144,GO:0018130,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.47,6.3.3.3 0.0000000000000000000000000000000000000006336 158.0
LYD2_k127_2796112_5 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.0000000000000000000000001088 108.0
LYD2_k127_2796112_6 - - - - 0.00000000000000000000001486 106.0
LYD2_k127_2796112_8 Helix-turn-helix XRE-family like proteins - - - 0.000008203 51.0
LYD2_k127_2796112_9 DSBA oxidoreductase - - - 0.0004185 44.0
LYD2_k127_2799235_1 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00000000000000000000000000000004597 131.0
LYD2_k127_2799235_2 - - - - 0.00000000000000000000000002479 116.0
LYD2_k127_2799235_3 PFAM nuclease (SNase domain protein) - - - 0.0000000000000051 78.0
LYD2_k127_2799235_5 nuclease - - - 0.0000000001157 63.0
LYD2_k127_2809651_0 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004346 372.0
LYD2_k127_2809651_1 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002995 260.0
LYD2_k127_2809651_2 reverse transcriptase - - - 0.000002841 50.0
LYD2_k127_281234_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 5.899e-210 655.0
LYD2_k127_281234_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 384.0
LYD2_k127_281234_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000005534 86.0
LYD2_k127_2814169_0 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 403.0
LYD2_k127_2814169_1 Pfam SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 308.0
LYD2_k127_2814169_2 carboxylic acid catabolic process K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000004587 244.0
LYD2_k127_2814169_3 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000001607 182.0
LYD2_k127_282928_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 506.0
LYD2_k127_282928_1 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001166 236.0
LYD2_k127_2844036_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 4.153e-279 874.0
LYD2_k127_2844036_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005914 520.0
LYD2_k127_2844036_2 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 423.0
LYD2_k127_2844036_3 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000005637 235.0
LYD2_k127_2844036_4 translation initiation factor activity K03407,K03646,K04065,K06596,K07277,K12065,K13593 - 2.7.13.3 0.0000000000000000000000000000000004399 141.0
LYD2_k127_2844036_5 nuclease - - - 0.000003965 49.0
LYD2_k127_288572_0 Type II/IV secretion system protein K02454,K02652 - - 9.246e-199 622.0
LYD2_k127_288572_1 Pilus assembly protein K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000232 267.0
LYD2_k127_288572_2 PFAM Fimbrial assembly family protein K02461,K02662,K02663,K12289 - - 0.0000000000000000000000000000000000000000000000000000008798 198.0
LYD2_k127_2905195_0 Glycosyl transferases group 1 - - - 1.378e-194 640.0
LYD2_k127_2905195_1 belongs to the thioredoxin family K02453,K07280,K20444,K20543 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 620.0
LYD2_k127_2905195_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 491.0
LYD2_k127_2905195_3 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 440.0
LYD2_k127_2905195_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 344.0
LYD2_k127_2905195_5 SMART Metal-dependent phosphohydrolase, HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 314.0
LYD2_k127_2905195_6 regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed - - - 0.0000000000000000000000000000000000000000000000000000000000000004379 227.0
LYD2_k127_2905195_7 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.0000000004252 62.0
LYD2_k127_2905195_8 Methyltransferase domain - - - 0.0000000278 68.0
LYD2_k127_2925217_0 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000000000000000000000000000000000003232 221.0
LYD2_k127_2925217_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K16079 - - 0.0000000000000000000000000000000000000000000000000000000000001703 218.0
LYD2_k127_2925217_2 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000000000000004462 164.0
LYD2_k127_2925217_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07285 - - 0.00000000000000000000000000000000003983 142.0
LYD2_k127_2925217_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000002394 98.0
LYD2_k127_2925217_5 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000001077 80.0
LYD2_k127_2925217_6 carboxylic ester hydrolase activity - - - 0.0009726 42.0
LYD2_k127_2963779_0 mechanosensitive ion channel activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 597.0
LYD2_k127_2963779_1 Cysteine-rich domain K00241,K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000846 479.0
LYD2_k127_2963779_10 AAA domain - - - 0.0001502 50.0
LYD2_k127_2963779_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 451.0
LYD2_k127_2963779_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 394.0
LYD2_k127_2963779_4 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000000003152 205.0
LYD2_k127_2963779_5 ORF6N domain - - - 0.0000000000000000000000000000000000000000000000000007836 188.0
LYD2_k127_2963779_7 - - - - 0.000000000000000000000000001979 114.0
LYD2_k127_2963779_9 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.0000000000000000005213 87.0
LYD2_k127_2985131_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.0 1635.0
LYD2_k127_2985131_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.0 1592.0
LYD2_k127_2985131_10 PFAM nuclease (SNase domain protein) - - - 0.000006472 55.0
LYD2_k127_2985131_12 NADH-quinone oxidoreductase subunit M K00342 - 1.6.5.3 0.0008097 47.0
LYD2_k127_2985131_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 567.0
LYD2_k127_2985131_3 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 344.0
LYD2_k127_2985131_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000000000000000001771 202.0
LYD2_k127_2985131_5 Tellurite resistance protein TerB - - - 0.00000000000000000000000000000000000000000000002429 182.0
LYD2_k127_2985131_6 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000003522 113.0
LYD2_k127_2985131_8 nuclease K01174 - 3.1.31.1 0.000000003503 60.0
LYD2_k127_2985131_9 Terminase small subunit K07474 - - 0.00000001106 59.0
LYD2_k127_30683_0 Cytochrome c K00405 - - 1.413e-315 973.0
LYD2_k127_30683_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005373 499.0
LYD2_k127_30683_2 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001722 251.0
LYD2_k127_30683_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000599 180.0
LYD2_k127_307136_0 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 411.0
LYD2_k127_307136_1 heat shock protein binding K05516,K05801,K18481 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001066 274.0
LYD2_k127_307136_2 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000001437 142.0
LYD2_k127_3071751_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 468.0
LYD2_k127_3071751_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000499 272.0
LYD2_k127_3071751_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000003205 187.0
LYD2_k127_30849_0 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009574 438.0
LYD2_k127_30849_1 HTH-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 293.0
LYD2_k127_30849_2 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002204 265.0
LYD2_k127_30849_3 PFAM Hemerythrin HHE cation binding domain protein - - - 0.000000000000000000000000000004134 126.0
LYD2_k127_30849_4 YtxH-like protein - - - 0.0000000002598 65.0
LYD2_k127_30849_5 Transcriptional regulator, Crp Fnr family - - - 0.000000002194 60.0
LYD2_k127_30849_6 Peptidase propeptide and YPEB domain - - - 0.000002366 53.0
LYD2_k127_30849_7 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.00001112 54.0
LYD2_k127_30849_8 DNA ligase K01971 - 6.5.1.1 0.0002643 43.0
LYD2_k127_3088905_0 Transcriptional regulator - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 418.0
LYD2_k127_3088905_1 sulfate adenylyltransferase (ATP) activity K00860,K00955,K00956 - 2.7.1.25,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 322.0
LYD2_k127_3088905_2 Proto-chlorophyllide reductase 57 kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005786 319.0
LYD2_k127_3088905_3 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008654 272.0
LYD2_k127_3088905_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000001598 261.0
LYD2_k127_3088905_5 addiction module antidote protein HigA K21498 - - 0.00000000000000000000000000005823 118.0
LYD2_k127_3088905_6 HEPN domain - - - 0.0000000000000000000000000001503 122.0
LYD2_k127_3088905_8 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.000002321 50.0
LYD2_k127_309758_0 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003246 398.0
LYD2_k127_309758_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.0000000001312 62.0
LYD2_k127_3148508_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 6.793e-196 623.0
LYD2_k127_3148508_1 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 586.0
LYD2_k127_3148508_10 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.00000000000000000000000164 107.0
LYD2_k127_3148508_11 Histidine kinase - - - 0.000000000000000000000002659 108.0
LYD2_k127_3148508_12 PFAM Tetratricopeptide repeat - - - 0.00000000000000000000003824 108.0
LYD2_k127_3148508_13 modulation by symbiont of host adenylate cyclase-mediated signal transduction K03775 - 5.2.1.8 0.00000000000000000005586 97.0
LYD2_k127_3148508_14 Glycosyltransferase Family 4 - - - 0.0000000000000000003501 89.0
LYD2_k127_3148508_15 - K07275 - - 0.00000000000000003862 89.0
LYD2_k127_3148508_16 Staphylococcal nuclease homologues K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0000005972 53.0
LYD2_k127_3148508_17 IMP dehydrogenase activity K04767 - - 0.0000007079 57.0
LYD2_k127_3148508_19 hydrolase, family 65, central catalytic K01087,K01194 GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0016787,GO:0030312,GO:0044464,GO:0071944 3.1.3.12,3.2.1.28 0.0001065 48.0
LYD2_k127_3148508_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 509.0
LYD2_k127_3148508_20 YtxH-like protein - - - 0.0003196 46.0
LYD2_k127_3148508_3 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003736 315.0
LYD2_k127_3148508_4 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001351 243.0
LYD2_k127_3148508_5 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000004181 212.0
LYD2_k127_3148508_6 translation initiation factor activity K03407,K03646,K04065,K06596,K07277,K12065,K13593 - 2.7.13.3 0.000000000000000000000000000000000003244 147.0
LYD2_k127_3148508_7 Ferritin, Dps family protein K03594 - 1.16.3.1 0.0000000000000000000000000000000007285 133.0
LYD2_k127_3148508_8 Cytochrome c - - - 0.000000000000000000000000008084 111.0
LYD2_k127_3148508_9 Major facilitator Superfamily - - - 0.00000000000000000000000005837 109.0
LYD2_k127_3162182_0 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 597.0
LYD2_k127_3162182_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 407.0
LYD2_k127_3175191_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000928 601.0
LYD2_k127_3175191_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 374.0
LYD2_k127_3175191_2 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000002754 170.0
LYD2_k127_3175191_3 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000003547 167.0
LYD2_k127_3175191_4 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000002263 112.0
LYD2_k127_3175191_5 protein disulfide oxidoreductase activity K03673 - - 0.00000000000000000001454 95.0
LYD2_k127_3178969_0 WD40-like Beta Propeller Repeat K03641 - - 8.967e-228 713.0
LYD2_k127_3178969_1 energy transducer activity K03646,K03832 - - 0.0000000000000000000000000000000000000000000003149 181.0
LYD2_k127_3178969_2 Biopolymer transport protein ExbD/TolR K03560 - - 0.00000000000000000008862 89.0
LYD2_k127_3178969_3 PFAM 4Fe-4S ferredoxin iron-sulfur binding - - - 0.0000003194 55.0
LYD2_k127_3180033_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 372.0
LYD2_k127_3180033_1 PFAM Glycosyl transferase family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009311 359.0
LYD2_k127_3185057_0 PFAM nuclease (SNase domain protein) - - - 0.00000000000000000000005964 104.0
LYD2_k127_3185727_0 - - - - 5.454e-213 677.0
LYD2_k127_3185727_1 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 523.0
LYD2_k127_3185727_2 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 407.0
LYD2_k127_3185727_3 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001311 254.0
LYD2_k127_3185727_4 SIR2-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000007843 221.0
LYD2_k127_3185727_5 SIR2-like domain - - - 0.0000000000000000000001574 100.0
LYD2_k127_3185727_7 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.0000000001439 63.0
LYD2_k127_3185727_8 lysyltransferase activity K07027 - - 0.0000000005304 61.0
LYD2_k127_3186759_0 Glycosyl hydrolases family 15 - - - 0.00000000000000000000000000000000000000000000004174 171.0
LYD2_k127_3186759_1 Alpha amylase, catalytic domain K00700,K01236 - 2.4.1.18,3.2.1.141 0.0000008507 51.0
LYD2_k127_3186971_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0 1115.0
LYD2_k127_3186971_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1093.0
LYD2_k127_3186971_10 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.00000000000000000000000000000000000000000000000000001221 190.0
LYD2_k127_3186971_11 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000000000000001844 176.0
LYD2_k127_3186971_12 branched-chain-amino-acid transaminase activity K00824 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019478,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0047810,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.6.1.21 0.00000000000000000000000000000000000000000000001069 174.0
LYD2_k127_3186971_13 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000006092 152.0
LYD2_k127_3186971_15 Protein conserved in bacteria K09764 - - 0.00000000000000000000000000000000004937 135.0
LYD2_k127_3186971_16 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000002649 121.0
LYD2_k127_3186971_2 polyribonucleotide nucleotidyltransferase activity K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 2.513e-250 790.0
LYD2_k127_3186971_3 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 2.45e-222 700.0
LYD2_k127_3186971_4 Participates in both transcription termination and antitermination K02600 - - 1.459e-207 649.0
LYD2_k127_3186971_5 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008827 550.0
LYD2_k127_3186971_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 354.0
LYD2_k127_3186971_9 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000009698 197.0
LYD2_k127_3187090_0 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008712 238.0
LYD2_k127_3187090_1 IMP dehydrogenase activity K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000001794 226.0
LYD2_k127_3187090_2 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000007601 145.0
LYD2_k127_3187090_3 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.000000000000000000000005364 104.0
LYD2_k127_3187090_4 AMP binding K11932 - - 0.00007494 46.0
LYD2_k127_3187312_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002054 252.0
LYD2_k127_3187312_2 Protein of unknown function (DUF2283) - - - 0.00000000000000000002505 92.0
LYD2_k127_3187312_3 Domain of unknown function (DUF4258) - - - 0.0000000000000000002382 89.0
LYD2_k127_3191288_0 phospholipase Carboxylesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 535.0
LYD2_k127_3191288_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000008456 237.0
LYD2_k127_3201725_0 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 374.0
LYD2_k127_3201725_1 PFAM blue (type 1) copper domain protein - - - 0.0005502 47.0
LYD2_k127_3228553_0 Stage II sporulation protein K06381 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005653 448.0
LYD2_k127_3228553_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 407.0
LYD2_k127_3228553_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 322.0
LYD2_k127_3228553_3 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005626 279.0
LYD2_k127_3228553_4 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000007943 233.0
LYD2_k127_3228553_5 NHL repeat - - - 0.000000000000000000000000000419 115.0
LYD2_k127_3228553_6 Protein of unknown function (DUF2905) - - - 0.0000000000000000000007448 98.0
LYD2_k127_3232911_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 282.0
LYD2_k127_3232911_1 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000002641 262.0
LYD2_k127_3232911_2 metal cluster binding K06940 - - 0.000000000000000000000000000000000000000000000000000000000012 213.0
LYD2_k127_3232911_3 Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000002562 200.0
LYD2_k127_3232911_5 regulation of translation K03530 - - 0.0000000000000000000000000000000000000000003395 160.0
LYD2_k127_3232911_6 Mo-molybdopterin cofactor metabolic process K03636 - - 0.000000000000000000000000000000000000008263 149.0
LYD2_k127_3240080_0 OsmC-like protein K09136 - - 0.000000000000000000000000000000000000000000000000000000000000006531 218.0
LYD2_k127_3240080_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000002436 203.0
LYD2_k127_3240080_2 - K07112 - - 0.00000000000000000000000000000000000000000004199 171.0
LYD2_k127_3240080_3 overlaps another CDS with the same product name K07112 - - 0.00000000000000000000000000000000000006776 149.0
LYD2_k127_3240080_4 DsrE/DsrF-like family K09004 - - 0.00000000000005093 75.0
LYD2_k127_3247326_0 Pirin K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 400.0
LYD2_k127_3247326_1 nitrite reductase [NAD(P)H] activity K00158,K00363,K03809,K05710 - 1.2.3.3,1.6.5.2,1.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 361.0
LYD2_k127_3247326_2 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000279 265.0
LYD2_k127_3247326_4 nitrite reductase [NAD(P)H] activity K00158,K00363,K03809,K05710 - 1.2.3.3,1.6.5.2,1.7.1.15 0.000000000000000000000000000000000000000000000000000000000000000000003967 238.0
LYD2_k127_3247326_5 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000001809 219.0
LYD2_k127_3247326_6 SnoaL-like domain - - - 0.000000000000000000000004597 105.0
LYD2_k127_3247326_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00005963 48.0
LYD2_k127_3250449_0 GDP-mannose mannosyl hydrolase activity K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000002994 208.0
LYD2_k127_3250449_1 nuclease activity K06218 - - 0.0000000000000000000000000000001047 126.0
LYD2_k127_3250449_2 protein maturation K07390,K13628,K15724 - - 0.0000000000000000005007 91.0
LYD2_k127_3258307_0 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 479.0
LYD2_k127_3258307_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000002721 257.0
LYD2_k127_3258307_2 protein trimerization K01206,K07114,K07126 - 3.2.1.51 0.000000000000000000000000000000000000000000000000002268 200.0
LYD2_k127_3258307_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000001237 80.0
LYD2_k127_3264805_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 4.922e-225 699.0
LYD2_k127_3264805_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 7.065e-222 692.0
LYD2_k127_3264805_2 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 482.0
LYD2_k127_3264805_3 Major Facilitator Superfamily K02575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 403.0
LYD2_k127_3264805_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000000000000000002884 174.0
LYD2_k127_3264805_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000001998 61.0
LYD2_k127_3264931_0 PFAM Integrase catalytic region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 458.0
LYD2_k127_3264931_1 transposase activity K07483 - - 0.0000000000000000000000000000000000002132 143.0
LYD2_k127_3264931_2 transposase activity - - - 0.000000000000000000000000157 111.0
LYD2_k127_3276728_0 lipopolysaccharide transport K22110 - - 0.0 1512.0
LYD2_k127_3276728_2 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.0001273 45.0
LYD2_k127_3286781_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1413.0
LYD2_k127_3286781_1 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 6.504e-232 728.0
LYD2_k127_3286781_10 Protein of unknown function (DUF423) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000004912 144.0
LYD2_k127_3286781_11 sequence-specific DNA binding - - - 0.000000000000000000000000000003099 123.0
LYD2_k127_3286781_14 nucleotidyltransferase activity K00984,K19279 - 2.7.7.47 0.0000000000003049 72.0
LYD2_k127_3286781_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 601.0
LYD2_k127_3286781_3 Alpha/beta hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 385.0
LYD2_k127_3286781_5 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 301.0
LYD2_k127_3286781_6 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 294.0
LYD2_k127_3286781_7 - K07184,K07777,K12065,K13527 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000001398 251.0
LYD2_k127_3289183_0 domain protein K04618 - 1.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 438.0
LYD2_k127_3289183_1 deoxyribonuclease I activity K01150 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005576,GO:0005623,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0019439,GO:0034641,GO:0034655,GO:0042597,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 3.1.21.1 0.000002746 49.0
LYD2_k127_3289183_2 nuclease K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0009726 42.0
LYD2_k127_3293553_0 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003873 356.0
LYD2_k127_3293553_1 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004835 254.0
LYD2_k127_3293553_2 transferase activity, transferring acyl groups - - - 0.000000000000000000000000001837 118.0
LYD2_k127_3293553_4 COGs COG2929 conserved K09803 - - 0.0000003906 55.0
LYD2_k127_3300053_0 response regulator K02282 - - 0.0000000000000000000000000000000000000000000000000005012 191.0
LYD2_k127_3300053_1 response regulator K02282 - - 0.0000000000000000000000000000000000000000000000000379 188.0
LYD2_k127_3300053_2 - - - - 0.00000000000000000002316 93.0
LYD2_k127_3300055_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 408.0
LYD2_k127_3300055_1 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 294.0
LYD2_k127_3300055_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 291.0
LYD2_k127_3300055_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000003005 66.0
LYD2_k127_330225_0 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 1.194e-267 833.0
LYD2_k127_330225_1 Male sterility protein K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 471.0
LYD2_k127_330225_2 PFAM Alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009442 407.0
LYD2_k127_330225_3 uroporphyrinogen-III synthase activity K01719,K13542 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007616 379.0
LYD2_k127_330225_4 YceI-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 289.0
LYD2_k127_330225_5 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000000000000000000000000000009675 218.0
LYD2_k127_330225_6 energy transducer activity K03407,K03832 - 2.7.13.3 0.00000000000000000000000000000000000001258 147.0
LYD2_k127_330225_7 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.00000000000000000000000000009116 117.0
LYD2_k127_330225_8 - - - - 0.0000000000000000000001001 108.0
LYD2_k127_330225_9 23S rRNA-intervening sequence protein - - - 0.000000004561 58.0
LYD2_k127_3317461_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 9.655e-313 971.0
LYD2_k127_3317461_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 366.0
LYD2_k127_3317461_2 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000002836 186.0
LYD2_k127_3317461_3 LysM domain - - - 0.000000000000000000000000000000000000000000002542 175.0
LYD2_k127_3326457_0 Reverse transcriptase (RNA-dependent DNA polymerase) - - - 4.245e-211 664.0
LYD2_k127_3326457_1 - - - - 0.0000000000000000000000000000000006979 133.0
LYD2_k127_3326457_3 - - - - 0.0000009963 51.0
LYD2_k127_3328013_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000515 454.0
LYD2_k127_3328013_1 BON domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 286.0
LYD2_k127_3328013_2 positive regulation of acetylcholine metabolic process K06910 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006855 245.0
LYD2_k127_3328013_3 Protein of unknown function (DUF1614) - - - 0.0000000000000000000000000000000000000000000000000000004022 202.0
LYD2_k127_3328013_4 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000003502 199.0
LYD2_k127_3328013_5 Pyruvate formate lyase-activating protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000002997 153.0
LYD2_k127_3328013_6 Mut7-C ubiquitin K09122 - - 0.00000000000000000000000006133 113.0
LYD2_k127_3328013_7 universal stress protein - - - 0.00000000000003511 83.0
LYD2_k127_3331416_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K06147,K11085 - - 1.064e-274 854.0
LYD2_k127_3331416_1 Domain of unknown function (DUF374) K09778 - - 0.00000000007109 64.0
LYD2_k127_333268_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0 1442.0
LYD2_k127_333268_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 1.73e-202 640.0
LYD2_k127_333268_2 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 402.0
LYD2_k127_333268_3 phosphonoacetaldehyde hydrolase activity K20881 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 326.0
LYD2_k127_333268_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005614 282.0
LYD2_k127_333268_6 response regulator - - - 0.00000000000111 76.0
LYD2_k127_3339912_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 467.0
LYD2_k127_3339912_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 392.0
LYD2_k127_3339912_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 344.0
LYD2_k127_3339912_3 Ribosomal protein L4/L1 family K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 287.0
LYD2_k127_3339912_4 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000000000009377 186.0
LYD2_k127_3339912_5 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000001256 186.0
LYD2_k127_3339912_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000002625 168.0
LYD2_k127_3339912_7 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000002194 160.0
LYD2_k127_3339912_8 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000005606 98.0
LYD2_k127_3339912_9 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000001615 76.0
LYD2_k127_3341209_0 Competence-damaged protein K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005632 503.0
LYD2_k127_3341209_1 peroxidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 455.0
LYD2_k127_3346527_0 Cell wall formation K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 461.0
LYD2_k127_3346527_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 334.0
LYD2_k127_3346527_2 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001477 268.0
LYD2_k127_3346527_3 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K01921,K03589,K06438 GO:0000003,GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019954,GO:0022402,GO:0022414,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032505,GO:0032506,GO:0040007,GO:0042802,GO:0043093,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 6.3.2.4 0.00000000000000000000000000000000000000000000000000000009634 206.0
LYD2_k127_3347358_0 aldehyde-lyase activity K01621 - 4.1.2.22,4.1.2.9 0.0 1412.0
LYD2_k127_3347358_1 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 390.0
LYD2_k127_3347358_2 glycolate biosynthetic process K01091,K05967,K07025 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 327.0
LYD2_k127_3347358_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000003093 237.0
LYD2_k127_3352808_0 Uncharacterized protein family (UPF0051) K07033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 557.0
LYD2_k127_3352808_1 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 411.0
LYD2_k127_3352808_2 Glyoxalase-like domain - - - 0.0000000000000000000000000005323 116.0
LYD2_k127_3352808_3 PFAM ABC transporter K09013 - - 0.000000000000000000001925 96.0
LYD2_k127_3364861_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0 1212.0
LYD2_k127_3364861_1 von Willebrand factor (vWF) type A domain K02448 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006723 499.0
LYD2_k127_3364861_2 Associated with various cellular activities K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 471.0
LYD2_k127_3364861_3 nitric oxide reductase activity K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 432.0
LYD2_k127_3364861_4 ferredoxin-thioredoxin reductase activity K17892 GO:0003674,GO:0003824,GO:0005488,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015979,GO:0016491,GO:0016730,GO:0022900,GO:0030385,GO:0044237,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114 1.8.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000002064 246.0
LYD2_k127_3364861_5 Glycine-zipper domain - - - 0.00000000000000000000000000000000000000000005722 166.0
LYD2_k127_3364861_7 DUF167 K09131 - - 0.0000000000000000000000000008018 115.0
LYD2_k127_3364861_8 - - - - 0.0000000000000000001032 91.0
LYD2_k127_3364861_9 - - - - 0.000004655 57.0
LYD2_k127_3368940_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 576.0
LYD2_k127_3368940_1 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000003327 179.0
LYD2_k127_3368940_2 cellular response to DNA damage stimulus K07340 - - 0.00000000000000000000000000000000000000000000003164 173.0
LYD2_k127_3368940_3 - - - - 0.00000000000000000009727 93.0
LYD2_k127_3370153_0 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 555.0
LYD2_k127_3370153_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000001931 213.0
LYD2_k127_3385403_0 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 405.0
LYD2_k127_3385403_1 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 294.0
LYD2_k127_3385403_2 transferase activity, transferring glycosyl groups K20742 - 3.4.14.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 287.0
LYD2_k127_3389396_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 0.0 1740.0
LYD2_k127_3389396_1 Required for chromosome condensation and partitioning K03529 - - 0.0 1309.0
LYD2_k127_3389396_10 Transcriptional regulatory protein, C terminal K07658 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003776 362.0
LYD2_k127_3389396_11 Tetratricopeptide repeat K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 344.0
LYD2_k127_3389396_12 cell redox homeostasis - - - 0.00000000000000000000000000000000000000000000000000000000002182 210.0
LYD2_k127_3389396_14 PFAM Integrase catalytic region - - - 0.0000001021 57.0
LYD2_k127_3389396_15 Staphylococcal nuclease homologues - - - 0.000001945 55.0
LYD2_k127_3389396_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.408e-241 754.0
LYD2_k127_3389396_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.394e-230 720.0
LYD2_k127_3389396_4 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 5.115e-215 683.0
LYD2_k127_3389396_5 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009094 554.0
LYD2_k127_3389396_6 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006731 454.0
LYD2_k127_3389396_7 oxidoreductase K10960 - 1.3.1.111,1.3.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 422.0
LYD2_k127_3389396_8 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005775 409.0
LYD2_k127_3389396_9 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 396.0
LYD2_k127_3392969_0 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.0000000000000000000000000000000000000000000001201 170.0
LYD2_k127_3392969_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K00082 - 1.1.1.193 0.000000000000000000000000000008876 126.0
LYD2_k127_3393439_0 proteins of the AP superfamily - - - 4.939e-213 670.0
LYD2_k127_3393439_1 TatD related DNase K07051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 476.0
LYD2_k127_3393439_2 UbiA prenyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000007797 241.0
LYD2_k127_3393439_3 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000005566 168.0
LYD2_k127_3393439_4 GAF domain - - - 0.000000000000000000000000000000000000000001259 160.0
LYD2_k127_3393439_5 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.00000000000000001611 91.0
LYD2_k127_3393439_6 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.0000000002233 61.0
LYD2_k127_3393561_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 3.615e-248 775.0
LYD2_k127_3393561_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 446.0
LYD2_k127_3393561_2 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000004635 231.0
LYD2_k127_3393561_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000007497 178.0
LYD2_k127_3396142_0 peptidyl-tyrosine sulfation - - - 2.851e-206 689.0
LYD2_k127_3396142_1 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008045 303.0
LYD2_k127_3396142_2 PFAM type II and III secretion system protein K02453 - - 0.00000000000000002823 93.0
LYD2_k127_341116_0 transmembrane transporter activity K03535 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 285.0
LYD2_k127_341116_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001231 271.0
LYD2_k127_341116_2 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000000002965 182.0
LYD2_k127_3422623_0 transposase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005399 359.0
LYD2_k127_3422623_1 - - - - 0.00007828 46.0
LYD2_k127_3461694_0 NUBPL iron-transfer P-loop NTPase K16554 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 463.0
LYD2_k127_3461694_1 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 379.0
LYD2_k127_3461694_2 O-Antigen Polymerase K02847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009399 321.0
LYD2_k127_3461694_3 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000000000000000000000000000004501 230.0
LYD2_k127_3461694_4 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000002307 188.0
LYD2_k127_3461694_5 PFAM Glycosyl transferase, group 1 - - - 0.00000000000002799 82.0
LYD2_k127_3461694_6 export protein K01991 - - 0.0000000001389 71.0
LYD2_k127_3469414_0 bacterial OsmY and nodulation domain K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.000000000000002573 87.0
LYD2_k127_3469414_1 Belongs to the UPF0337 (CsbD) family - - - 0.00003772 55.0
LYD2_k127_3472127_0 NADH-quinone oxidoreductase K00341 - 1.6.5.3 0.0 1020.0
LYD2_k127_3472127_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00342 - 1.6.5.3 3.624e-238 745.0
LYD2_k127_3472127_10 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000001518 198.0
LYD2_k127_3472127_11 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000002089 168.0
LYD2_k127_3472127_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.00000000000000000000000000000000000000005379 153.0
LYD2_k127_3472127_13 phosphorelay sensor kinase activity K16923 - - 0.0000002464 62.0
LYD2_k127_3472127_14 - - - - 0.0004566 43.0
LYD2_k127_3472127_15 - - - - 0.0008007 44.0
LYD2_k127_3472127_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 3.428e-202 644.0
LYD2_k127_3472127_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 508.0
LYD2_k127_3472127_4 Belongs to the peptidase M50B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 462.0
LYD2_k127_3472127_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 338.0
LYD2_k127_3472127_6 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006538 319.0
LYD2_k127_3472127_7 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 305.0
LYD2_k127_3472127_8 Glyoxalase-like domain K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000004587 222.0
LYD2_k127_3472127_9 acetyltransferase K22278 - 3.5.1.104 0.0000000000000000000000000000000000000000000000000000000000006253 213.0
LYD2_k127_3476799_0 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000605 280.0
LYD2_k127_3476799_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000002065 167.0
LYD2_k127_3476799_2 AMP binding - - - 0.00000000000000000000000000000000000000000002528 176.0
LYD2_k127_3476799_3 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.0000000000000000000008041 94.0
LYD2_k127_3479236_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 2.335e-262 817.0
LYD2_k127_3479236_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009619 544.0
LYD2_k127_3479236_2 Thioredoxin-like domain K03671 - - 0.000000000000000000000000000000000000000000000000000000000001172 211.0
LYD2_k127_3479236_3 response regulator K07814 - - 0.000000000000000006946 84.0
LYD2_k127_3486008_0 ATP-dependent DNA helicase (RecQ) K03654 - 3.6.4.12 4.454e-290 902.0
LYD2_k127_3486008_1 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009928 550.0
LYD2_k127_3486008_2 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000906 506.0
LYD2_k127_3486008_3 Phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 344.0
LYD2_k127_3486008_4 metal cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009749 288.0
LYD2_k127_3486008_5 Ubiquinol--cytochrome c reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001757 239.0
LYD2_k127_3486008_7 Zn peptidase - - - 0.00000000000000000000000000000000000006601 143.0
LYD2_k127_3486008_8 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000003363 138.0
LYD2_k127_3486008_9 DUF218 domain - - - 0.000000000000000000000000000117 119.0
LYD2_k127_3489543_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 434.0
LYD2_k127_3489543_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 400.0
LYD2_k127_3489543_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007651 286.0
LYD2_k127_3489543_3 Glycoprotease family K14742 - - 0.000000000000000000000000000000000000000000000000000000000000002229 229.0
LYD2_k127_3489543_4 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.000000000000000000000000000000000000000000002465 170.0
LYD2_k127_3489543_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000000000000000000000005805 134.0
LYD2_k127_3489543_7 Protein of unknown function (DUF465) K09794 - - 0.000000000000000001179 89.0
LYD2_k127_3498183_0 PFAM Copper resistance D K07245 - - 1.014e-286 896.0
LYD2_k127_3498183_1 PFAM Integrase catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 394.0
LYD2_k127_3498183_2 transposition, DNA-mediated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 350.0
LYD2_k127_3498183_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001285 250.0
LYD2_k127_3498183_4 - - - - 0.0000000000000000000000000000000000000000000000000000007705 199.0
LYD2_k127_3498183_5 - - - - 0.00000000000000000000000000000000000000000000000001733 187.0
LYD2_k127_3498183_6 PFAM Copper resistance protein CopC K07156 - - 0.000000000000000000000000000000000000000000000000174 181.0
LYD2_k127_3498183_7 PFAM Integrase catalytic - - - 0.00000005868 58.0
LYD2_k127_3501294_0 - - - - 1.4e-259 805.0
LYD2_k127_3501294_1 lytic transglycosylase activity K08306,K08308,K08309 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0009987,GO:0016020,GO:0016740,GO:0016757,GO:0019867,GO:0030203,GO:0030288,GO:0030312,GO:0030313,GO:0031224,GO:0031225,GO:0031975,GO:0033554,GO:0034599,GO:0042221,GO:0042597,GO:0043170,GO:0044425,GO:0044462,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0061783,GO:0070887,GO:0071236,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 556.0
LYD2_k127_3501294_10 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.00000000000000000000000000005581 119.0
LYD2_k127_3501294_11 acetyltransferase K18816 GO:0003674,GO:0003824,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0034069,GO:0042221,GO:0046677,GO:0047663,GO:0050896 2.3.1.82 0.00000000000000000000000000006655 119.0
LYD2_k127_3501294_12 Acetyltransferase (GNAT) domain - - - 0.0000000000000000004188 89.0
LYD2_k127_3501294_14 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000007625 72.0
LYD2_k127_3501294_15 AMP binding K11932 - - 0.0000000009741 60.0
LYD2_k127_3501294_16 - - - - 0.000000005351 64.0
LYD2_k127_3501294_2 (ABC) transporter K15738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 340.0
LYD2_k127_3501294_3 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 336.0
LYD2_k127_3501294_4 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000002492 257.0
LYD2_k127_3501294_5 Serine hydrolase K07002,K19073 - 1.3.1.75 0.00000000000000000000000000000000000000000000000000000000000008187 217.0
LYD2_k127_3501294_6 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000007406 213.0
LYD2_k127_3501294_7 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.00000000000000000000000000000000000000000000000000002533 199.0
LYD2_k127_3501294_8 - - - - 0.000000000000000000000000000000000000000000000007555 180.0
LYD2_k127_352647_0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K01214 - 3.2.1.68 0.0 1039.0
LYD2_k127_352647_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1010.0
LYD2_k127_352647_10 anaphase-promoting complex-dependent catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000002124 215.0
LYD2_k127_352647_11 cellulase activity K18197 - 4.2.2.23 0.000000000000000000000000000000002742 137.0
LYD2_k127_352647_12 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000004999 128.0
LYD2_k127_352647_13 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000004375 121.0
LYD2_k127_352647_14 Major facilitator Superfamily - - - 0.00000000000000000000002607 104.0
LYD2_k127_352647_15 Transposase - - - 0.00000000000000002584 87.0
LYD2_k127_352647_16 MTH538 TIR-like domain (DUF1863) - - - 0.000000000000001962 84.0
LYD2_k127_352647_17 Belongs to the 'phage' integrase family - - - 0.00000000000005224 76.0
LYD2_k127_352647_18 - - - - 0.0000000003595 61.0
LYD2_k127_352647_19 PFAM Integrase catalytic region - - - 0.00000002929 58.0
LYD2_k127_352647_2 Alpha amylase, catalytic domain K06044 - 5.4.99.15 2.166e-320 1007.0
LYD2_k127_352647_20 Helix-turn-helix domain - - - 0.0000002252 56.0
LYD2_k127_352647_21 COG2801 Transposase and inactivated derivatives K07497 - - 0.0000006255 53.0
LYD2_k127_352647_22 transposase IS116 IS110 IS902 family protein K07486 - - 0.000002304 49.0
LYD2_k127_352647_23 recombinase activity - - - 0.0001344 46.0
LYD2_k127_352647_24 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0001475 44.0
LYD2_k127_352647_3 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 1.424e-286 894.0
LYD2_k127_352647_4 Maltogenic Amylase, C-terminal domain K05343 - 3.2.1.1,5.4.99.16 3.47e-271 844.0
LYD2_k127_352647_5 Alpha amylase, catalytic domain K00700,K01236 - 2.4.1.18,3.2.1.141 3.865e-216 688.0
LYD2_k127_352647_6 Alpha-amylase domain K05343 - 3.2.1.1,5.4.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 484.0
LYD2_k127_352647_7 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 447.0
LYD2_k127_352647_8 Glycosyl transferase family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 443.0
LYD2_k127_352647_9 transmembrane transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002657 248.0
LYD2_k127_3540510_0 AcrB/AcrD/AcrF family - - - 0.0 1142.0
LYD2_k127_3540510_1 HlyD family secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 366.0
LYD2_k127_3540510_10 Replication initiation factor K07467 - - 0.000000000001843 68.0
LYD2_k127_3540510_11 Replication initiation factor K07467 - - 0.000000001292 61.0
LYD2_k127_3540510_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006091 300.0
LYD2_k127_3540510_3 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001247 261.0
LYD2_k127_3540510_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000007781 140.0
LYD2_k127_3540510_6 response regulator K03413 - - 0.0000000000000000000000000001965 124.0
LYD2_k127_3540510_8 outer membrane efflux protein - - - 0.0000000000000001787 93.0
LYD2_k127_3540510_9 Protein of unknown function (DUF3365) - - - 0.000000000000001163 77.0
LYD2_k127_3550794_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 495.0
LYD2_k127_3550794_2 protein (some members contain a von Willebrand factor type A (vWA) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006011 335.0
LYD2_k127_3550794_3 Transglutaminase/protease-like homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001509 255.0
LYD2_k127_3570461_0 phosphorelay sensor kinase activity K02668 - 2.7.13.3 7.963e-206 648.0
LYD2_k127_3570461_1 response regulator K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 440.0
LYD2_k127_3581857_0 Bacterial regulatory protein, Fis family K07715 - - 4.594e-230 721.0
LYD2_k127_3581857_1 ribonucleoside-diphosphate reductase activity K07735 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000001304 177.0
LYD2_k127_3581857_2 - K07184,K07777,K12065,K13527 - 2.7.13.3 0.0000003075 52.0
LYD2_k127_3583787_0 Na+-dependent bicarbonate transporter superfamily K07086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 496.0
LYD2_k127_3583787_1 Carboxysome Shell Carbonic Anhydrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 289.0
LYD2_k127_3583787_2 Histidine kinase K03406 - - 0.000000000000000000000000000002083 121.0
LYD2_k127_3583787_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000003995 112.0
LYD2_k127_3583787_4 Histidine kinase K03406 - - 0.0000000007974 59.0
LYD2_k127_3583787_5 - - - - 0.00000006968 57.0
LYD2_k127_3583787_6 Histidine kinase K03406 - - 0.00000008698 55.0
LYD2_k127_3605737_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 4.653e-207 657.0
LYD2_k127_3605737_1 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 361.0
LYD2_k127_3605737_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000009776 262.0
LYD2_k127_363432_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00982,K00990 - 2.7.7.42,2.7.7.59,2.7.7.89 3.21e-285 892.0
LYD2_k127_363432_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.000000000000000000000000000000000000001374 147.0
LYD2_k127_3645591_0 anaphase-promoting complex binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007718 503.0
LYD2_k127_3645591_1 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000001824 170.0
LYD2_k127_3645591_2 Protein of unknown function (DUF3800) - - - 0.0000000001619 71.0
LYD2_k127_3652679_0 domain protein K20276 - - 0.00008968 50.0
LYD2_k127_366226_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 3.758e-194 621.0
LYD2_k127_366226_1 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 308.0
LYD2_k127_3664919_0 exonuclease activity K16899 - 3.6.4.12 4.984e-268 859.0
LYD2_k127_3664919_1 UvrD REP helicase K16898 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 312.0
LYD2_k127_3720712_0 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 1.038e-194 617.0
LYD2_k127_3720712_1 AICARFT/IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 310.0
LYD2_k127_3720712_2 Telomere recombination K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000001937 195.0
LYD2_k127_37263_0 PFAM Cation H exchanger K03316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 376.0
LYD2_k127_37263_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006329 358.0
LYD2_k127_37263_2 LmbE family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001493 248.0
LYD2_k127_3813804_0 PFAM Type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004112 469.0
LYD2_k127_3813804_1 General secretion pathway protein F K02455,K02653 - - 0.000000000000000002873 89.0
LYD2_k127_38140_0 - - - - 0.0000000000000000000000000000000000000000000000000000000001058 206.0
LYD2_k127_38140_1 peptidase K02557,K21471 - - 0.000000000000000000000000000000000000000000000000000000006068 211.0
LYD2_k127_38140_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.0000000000000000000000000000000000000000000000000000002706 198.0
LYD2_k127_3819500_1 spermidine synthase activity K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000001277 261.0
LYD2_k127_3819500_2 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003269 241.0
LYD2_k127_38196_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 439.0
LYD2_k127_38196_1 pectinesterase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000288 225.0
LYD2_k127_38196_2 protein trimerization - - - 0.0000000000000000000000000000000000000000000000000000003409 199.0
LYD2_k127_3820906_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 332.0
LYD2_k127_3820906_2 Uncharacterized small protein (DUF2292) - - - 0.00000002236 61.0
LYD2_k127_3825031_0 NADH:flavin oxidoreductase / NADH oxidase family K10680 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 472.0
LYD2_k127_3825031_1 tRNA 3'-trailer cleavage - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 361.0
LYD2_k127_3825031_2 Winged helix-turn-helix DNA-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000001318 231.0
LYD2_k127_3832902_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 8.248e-194 609.0
LYD2_k127_3832902_1 NHL repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 454.0
LYD2_k127_3832902_2 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 401.0
LYD2_k127_3832902_3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000004989 224.0
LYD2_k127_3832902_4 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000003696 167.0
LYD2_k127_3837317_0 protein histidine kinase activity K02484,K07640,K07643,K07645,K07649,K19609 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 557.0
LYD2_k127_3837317_1 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005695 411.0
LYD2_k127_3837317_10 N-6 DNA Methylase K03427 - 2.1.1.72 0.00001155 48.0
LYD2_k127_3837317_2 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008745 355.0
LYD2_k127_3837317_3 Belongs to the UPF0753 family K09822 - - 0.00000000000000000000000000000000000000000000000000003789 196.0
LYD2_k127_3837317_4 - - - - 0.000000000000000000000000000000000000000000000000002975 190.0
LYD2_k127_3837317_7 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair - - - 0.00000008894 61.0
LYD2_k127_3837317_8 Integrase core domain K07482 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004803,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006313,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0030983,GO:0032135,GO:0032196,GO:0032991,GO:0032993,GO:0034641,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.0000009819 52.0
LYD2_k127_3837317_9 Belongs to the UPF0753 family K09822 - - 0.000003635 50.0
LYD2_k127_3838859_0 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 521.0
LYD2_k127_3838859_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 481.0
LYD2_k127_3838859_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004347 401.0
LYD2_k127_3838859_3 - - - - 0.000000000000000000000000000000000000000000000001869 174.0
LYD2_k127_3840797_0 DnaJ C terminal domain K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 454.0
LYD2_k127_3840797_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005161 355.0
LYD2_k127_3840797_2 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004127 282.0
LYD2_k127_3840797_3 belongs to the thioredoxin family K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000005272 236.0
LYD2_k127_3840797_4 membrane protein of uknown function UCP014873 - - - 0.000000000000000000000000000000000000000000000000000000000000000006996 229.0
LYD2_k127_3840797_5 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000001634 202.0
LYD2_k127_3840797_6 MerR HTH family regulatory protein K18997 - - 0.000000000000000001485 91.0
LYD2_k127_3842205_0 Two component signalling adaptor domain K02487,K06596 - - 2.057e-259 811.0
LYD2_k127_3842205_1 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 379.0
LYD2_k127_3842205_2 nuclear chromosome segregation K02666,K03497,K19622 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001704 274.0
LYD2_k127_3842205_3 Type II secretory pathway component ExeA - - - 0.00000000000000000000000000000000000000000000000000000000000771 221.0
LYD2_k127_3842205_4 PFAM metal-dependent phosphohydrolase, HD sub domain K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000002946 184.0
LYD2_k127_3842205_5 chemotaxis K02659,K03408,K03415,K11524 - - 0.000000000000000000000000000000001244 134.0
LYD2_k127_3844938_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 9.771e-272 853.0
LYD2_k127_3844938_1 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 5.24e-210 663.0
LYD2_k127_3844938_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 3.567e-198 629.0
LYD2_k127_3844938_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 4.267e-197 617.0
LYD2_k127_3844938_4 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 516.0
LYD2_k127_3844938_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 383.0
LYD2_k127_3844938_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 364.0
LYD2_k127_3844938_7 5TM C-terminal transporter carbon starvation CstA K06200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 346.0
LYD2_k127_3844938_8 Protein of unknown function (DUF520) K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001203 259.0
LYD2_k127_3844938_9 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000001914 112.0
LYD2_k127_3846975_0 Sterile alpha motif. - - - 3.681e-281 873.0
LYD2_k127_3846975_1 ABC1 family K03688 - - 0.0000000000000000000000000000006163 122.0
LYD2_k127_3849399_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0 1019.0
LYD2_k127_3849399_1 photosynthesis K02453,K02660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 556.0
LYD2_k127_3849399_4 Protein of unknown function, DUF393 - - - 0.000002593 55.0
LYD2_k127_3852886_0 Secretin and TonB N terminus short domain K02666 - - 3.078e-231 734.0
LYD2_k127_3852886_1 ANTAR - - - 4.969e-212 664.0
LYD2_k127_3852886_10 Histidine kinase K07683 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000009016 216.0
LYD2_k127_3852886_11 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000000000001053 158.0
LYD2_k127_3852886_2 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 518.0
LYD2_k127_3852886_3 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000954 474.0
LYD2_k127_3852886_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006439 450.0
LYD2_k127_3852886_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 459.0
LYD2_k127_3852886_6 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 329.0
LYD2_k127_3852886_7 Pilus assembly protein, PilO K02664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003701 274.0
LYD2_k127_3852886_8 Fimbrial assembly protein (PilN) K02663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001655 254.0
LYD2_k127_3852886_9 Pilus assembly protein, PilP K02665 - - 0.0000000000000000000000000000000000000000000000000000000000007836 216.0
LYD2_k127_3853811_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002377 271.0
LYD2_k127_3853811_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000512 250.0
LYD2_k127_3853811_2 phosphorelay sensor kinase activity K13598,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000006097 255.0
LYD2_k127_3853811_4 Putative Ig domain - - - 0.00000000182 64.0
LYD2_k127_3860767_0 Histidine kinase K07638 - 2.7.13.3 1.852e-318 996.0
LYD2_k127_3860767_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 331.0
LYD2_k127_3860767_2 Histidine kinase K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007656 263.0
LYD2_k127_3877487_0 Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007999 409.0
LYD2_k127_3877487_1 PLD-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004926 326.0
LYD2_k127_3877487_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000003652 231.0
LYD2_k127_3877487_3 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - 0.0000000000000000000000000000000002857 133.0
LYD2_k127_3877487_4 Protein conserved in bacteria - - - 0.0000000000000000000000000002262 117.0
LYD2_k127_3886083_0 rRNA (guanine-N2-)-methyltransferase activity K09846,K13604,K21460 GO:0003674,GO:0003824,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009987,GO:0015994,GO:0015995,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0030493,GO:0030494,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0036067,GO:0036069,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.210,2.1.1.304,2.1.1.333 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 479.0
LYD2_k127_3886083_1 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 455.0
LYD2_k127_3886083_2 membrane K08976 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 287.0
LYD2_k127_3886083_3 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000000000000000000000000000000002546 213.0
LYD2_k127_3893991_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 5.432e-209 663.0
LYD2_k127_3893991_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 470.0
LYD2_k127_3893991_2 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 340.0
LYD2_k127_3893991_3 ribonuclease P activity K03536,K08998 GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031123,GO:0031404,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.000000000000000000000000000001873 124.0
LYD2_k127_3896493_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01524,K07012 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006113 393.0
LYD2_k127_3896493_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 297.0
LYD2_k127_3897466_0 transferase activity, transferring hexosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 405.0
LYD2_k127_3897466_1 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000001295 170.0
LYD2_k127_3897466_2 PFAM Radical SAM domain protein - - - 0.00000000000000000000000000000000000000005231 166.0
LYD2_k127_3897466_3 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.000000001403 64.0
LYD2_k127_3897466_4 methyltransferase K01921 - 6.3.2.4 0.0001042 53.0
LYD2_k127_3906543_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007639 583.0
LYD2_k127_3906543_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000006019 229.0
LYD2_k127_3906543_2 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain K04771 - 3.4.21.107 0.00000000000000000000005608 108.0
LYD2_k127_3913856_0 Amino acid permease K03294 - - 2.412e-250 778.0
LYD2_k127_3913856_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 6.488e-222 695.0
LYD2_k127_3913856_3 Peptidase C26 K07010 - - 0.0000000000007599 68.0
LYD2_k127_3913856_4 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.0000000001154 64.0
LYD2_k127_3923428_0 AAA domain - - - 7.467e-260 807.0
LYD2_k127_3924478_0 dimethylargininase activity K00819 GO:0003674,GO:0003824,GO:0016403,GO:0016787,GO:0016810,GO:0016813 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 353.0
LYD2_k127_3924478_1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 295.0
LYD2_k127_3924478_3 Protein of unknown function (DUF2185) - - - 0.00000000000000000000000000001147 121.0
LYD2_k127_3924478_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000001128 78.0
LYD2_k127_3927704_0 Conserved carboxylase domain K01960 - 6.4.1.1 0.0 1028.0
LYD2_k127_3927704_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00322,K00382 - 1.6.1.1,1.8.1.4 4.636e-213 671.0
LYD2_k127_3927704_2 hydrolase activity, acting on ester bonds K01563 - 3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005653 379.0
LYD2_k127_3927704_3 thioredoxin peroxidase activity K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 295.0
LYD2_k127_3927704_4 Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway K03707 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 3.5.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002864 280.0
LYD2_k127_3940484_0 amine dehydrogenase activity - - - 0.0 1698.0
LYD2_k127_3940484_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1069.0
LYD2_k127_3940484_10 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003377 278.0
LYD2_k127_3940484_11 protein homooligomerization - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002548 262.0
LYD2_k127_3940484_12 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001225 246.0
LYD2_k127_3940484_14 OmpA family K02557 - - 0.0000000000000000000000000000000000000000000000007489 189.0
LYD2_k127_3940484_15 PFAM blue (type 1) copper domain protein K00368 - 1.7.2.1 0.00000000000000000000000000000006337 128.0
LYD2_k127_3940484_16 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000002258 126.0
LYD2_k127_3940484_18 FUN14 family - - - 0.00000144 57.0
LYD2_k127_3940484_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.092e-300 926.0
LYD2_k127_3940484_3 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 6.162e-273 845.0
LYD2_k127_3940484_4 methyltransferase - - - 5.231e-270 836.0
LYD2_k127_3940484_5 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 9.307e-213 664.0
LYD2_k127_3940484_6 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 449.0
LYD2_k127_3940484_7 Belongs to the pseudouridine synthase RsuA family K06178,K06181,K06182 - 5.4.99.20,5.4.99.21,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 389.0
LYD2_k127_3940484_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 361.0
LYD2_k127_3940484_9 ATPase activity K02013,K02028,K05776 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.6.3.21,3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 347.0
LYD2_k127_3949141_0 glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000816 402.0
LYD2_k127_3949141_1 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 381.0
LYD2_k127_3949141_2 PFAM Endonuclease exonuclease phosphatase K06896 - 3.1.3.90 0.00000000000000000000000000000000000000000000000000464 194.0
LYD2_k127_395458_0 phosphoserine phosphatase activity K02668,K07710,K07711,K10942 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 574.0
LYD2_k127_395458_1 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 531.0
LYD2_k127_395458_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00982,K00990 - 2.7.7.42,2.7.7.59,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001199 281.0
LYD2_k127_395458_3 Carboxysome Shell Carbonic Anhydrase - - - 0.000000000000000000000000000000000000000000000000000000004485 202.0
LYD2_k127_395458_4 Nitrogen regulatory protein P-II K04751,K04752 - - 0.0000000000000000000000000000000000000000000000001126 180.0
LYD2_k127_395458_5 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000474 151.0
LYD2_k127_395458_6 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000005742 141.0
LYD2_k127_3960743_0 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001616 281.0
LYD2_k127_3960743_1 peptidyl-lysine modification to peptidyl-hypusine K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000001954 233.0
LYD2_k127_3960743_2 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000561 164.0
LYD2_k127_3967965_0 peptidyl-lysine modification to peptidyl-hypusine K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006831 435.0
LYD2_k127_3967965_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00371,K16965,K17048,K17051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.7.5.1 0.00000000000000000002038 90.0
LYD2_k127_3989426_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 1.403e-210 663.0
LYD2_k127_3989426_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 0.000000000000000000000000000000000000001306 149.0
LYD2_k127_3995890_0 Glycoside hydrolase 15-related - - - 1.517e-261 818.0
LYD2_k127_3995890_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000005576 177.0
LYD2_k127_3995890_2 - - - - 0.00000000000000000000000001292 117.0
LYD2_k127_3995890_3 NlpC/P60 family - - - 0.00003317 47.0
LYD2_k127_3997609_0 silver ion transport K15726 - - 0.0 1038.0
LYD2_k127_3997609_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005119 435.0
LYD2_k127_3997609_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15725 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551 387.0
LYD2_k127_3997609_3 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000000000000000000000000000000004997 201.0
LYD2_k127_3997609_4 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.000000000000005151 75.0
LYD2_k127_4024551_0 dead DEAH box helicase K03727 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 1.689e-286 890.0
LYD2_k127_4024551_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K06147,K11085 - - 4.41e-246 771.0
LYD2_k127_4024551_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 9.146e-220 689.0
LYD2_k127_4024551_3 dead DEAH box helicase K03727 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 519.0
LYD2_k127_4024551_4 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 326.0
LYD2_k127_4024551_5 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000003157 264.0
LYD2_k127_4024551_6 Outer membrane protease K01355,K08477,K08566,K13520 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009279,GO:0016020,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031975,GO:0043170,GO:0044238,GO:0044425,GO:0044462,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 3.4.23.48,3.4.23.49 0.00000000000000000000000000000000000000000000000000000000000000000001178 246.0
LYD2_k127_4024551_7 metallopeptidase activity K01637 - 4.1.3.1 0.000000000000000000000000000000000000000000000000000000273 218.0
LYD2_k127_4025124_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 503.0
LYD2_k127_4025124_1 Protein of unknown function (DUF3422) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000484 412.0
LYD2_k127_4025124_10 - - - - 0.000000000000001287 77.0
LYD2_k127_4025124_11 Protein of unknown function (DUF1566) - - - 0.00000000002759 73.0
LYD2_k127_4025124_12 recombinase activity K06400 - - 0.00000000006293 64.0
LYD2_k127_4025124_13 - - - - 0.00000008617 57.0
LYD2_k127_4025124_14 PFAM nuclease (SNase domain protein) - - - 0.00001409 51.0
LYD2_k127_4025124_2 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000002722 219.0
LYD2_k127_4025124_3 hmm pf02371 K07486 - - 0.000000000000000000000000000000000000000000000000000001387 197.0
LYD2_k127_4025124_4 hmm pf02371 K07486 - - 0.00000000000000000000000000000000000000000000000435 175.0
LYD2_k127_4025124_5 Transposase - - - 0.0000000000000000000000000000000000000000000001022 171.0
LYD2_k127_4025124_6 Recombinase - - - 0.000000000000000000000000000000000000005079 159.0
LYD2_k127_4025124_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000002352 100.0
LYD2_k127_4025124_8 - - - - 0.0000000000000000000007288 106.0
LYD2_k127_4025124_9 - - - - 0.00000000000000012 85.0
LYD2_k127_4032035_0 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000000000000000000000000000000011 241.0
LYD2_k127_4032035_1 LPP20 lipoprotein - - - 0.000000000000000000000000000000000000000000005605 167.0
LYD2_k127_4032035_2 mannosylglycerate metabolic process K05947,K07026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050897 2.4.1.217,3.1.3.70 0.0000000005226 60.0
LYD2_k127_4032132_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07323 - - 0.0000000000000000000000000000000000000001549 158.0
LYD2_k127_4032132_1 glutamate-tRNA ligase activity K01886 GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 0.0000000000000000000000000000000000005882 141.0
LYD2_k127_4032132_2 Zinc-binding dehydrogenase K13979 - - 0.0000000000000000000000000000003981 123.0
LYD2_k127_4032132_3 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 - 0.000000000000002594 79.0
LYD2_k127_4034863_0 guanyl-nucleotide exchange factor activity - - - 3.01e-232 731.0
LYD2_k127_4034863_1 phosphopentomutase activity K01839 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008973,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 5.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007762 370.0
LYD2_k127_4034863_2 deoxyribose-phosphate aldolase activity K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 328.0
LYD2_k127_4034863_3 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000000000000000000009873 216.0
LYD2_k127_4034863_4 Photosynthesis system II assembly factor YCF48 - - - 0.0000000000000000000000000000009708 125.0
LYD2_k127_4036346_0 belongs to the aldehyde dehydrogenase family K00128 GO:0003674,GO:0003824,GO:0004029,GO:0006081,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0044237,GO:0055114,GO:0071704 1.2.1.3 2.014e-227 716.0
LYD2_k127_4036346_1 lactoylglutathione lyase activity K08234 - - 0.0000000000000000000000000000000000000000000000000278 186.0
LYD2_k127_4036346_2 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.000000000000000000965 86.0
LYD2_k127_4037102_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798,K04076,K13525,K17681 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 592.0
LYD2_k127_4037102_1 cellular manganese ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000002789 196.0
LYD2_k127_4039358_0 Hsp70 protein K04043,K04044 - - 9.457e-314 971.0
LYD2_k127_4039358_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 556.0
LYD2_k127_4039358_2 DnaJ molecular chaperone homology domain K04082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 292.0
LYD2_k127_4039358_3 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007042 246.0
LYD2_k127_4039358_4 Iron-sulphur cluster biosynthesis K13628 - - 0.000000000000000000000000000000000000000000000000000000000000002636 218.0
LYD2_k127_4039358_5 Iron-sulphur cluster assembly - - - 0.0000000000000000000000000000000009364 132.0
LYD2_k127_4043574_0 spore germination - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 345.0
LYD2_k127_4043574_2 peptidoglycan binding K03642 - - 0.0000000000000000000000000000000000000000000000001134 184.0
LYD2_k127_4043574_4 Regulatory protein, FmdB family - - - 0.00000000000000000000000000000284 124.0
LYD2_k127_4043574_6 phosphate ion binding K02040 - - 0.00000002463 58.0
LYD2_k127_4047358_0 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008557 289.0
LYD2_k127_4047358_1 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000002797 217.0
LYD2_k127_4047358_2 belongs to the thioredoxin family K14949,K20543 - 2.7.11.1 0.00000000000000000000000000000000000000000000001215 181.0
LYD2_k127_4047358_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000001292 172.0
LYD2_k127_4047358_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000007609 113.0
LYD2_k127_4058167_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007081 424.0
LYD2_k127_4058167_1 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 345.0
LYD2_k127_4058167_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 315.0
LYD2_k127_4058167_3 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000000000000000001442 150.0
LYD2_k127_4059282_0 transcription factor binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 608.0
LYD2_k127_4059282_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000694 190.0
LYD2_k127_4059282_2 Multicopper oxidase K00368,K07233,K22349 - 1.16.3.3,1.7.2.1 0.00000000000000000000000000000000000000000000002589 180.0
LYD2_k127_4059282_3 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000004076 149.0
LYD2_k127_4066602_0 Belongs to the aldehyde dehydrogenase family K00130,K00135,K00146,K22187 - 1.2.1.16,1.2.1.20,1.2.1.39,1.2.1.79,1.2.1.8 5.547e-253 788.0
LYD2_k127_4066602_1 Protein involved in response to NO K07234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007618 558.0
LYD2_k127_4066602_2 - - - - 0.0000000000000000000000000000000000000000000000000000000009928 203.0
LYD2_k127_4066602_3 ACT domain - - - 0.0000000000000000000000000003377 120.0
LYD2_k127_4066602_4 - K07184,K07777,K12065,K13527 - 2.7.13.3 0.00000000000000004602 90.0
LYD2_k127_4066602_5 Endonuclease containing a URI domain K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.00000000002151 64.0
LYD2_k127_4069000_0 TonB-dependent receptor - - - 0.0 1082.0
LYD2_k127_4069000_1 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 9.155e-254 795.0
LYD2_k127_4069000_10 Belongs to the DNA glycosylase MPG family K03652 GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000012 275.0
LYD2_k127_4069000_11 response to nickel cation K07722 GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016151,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032991,GO:0032993,GO:0042802,GO:0043167,GO:0043169,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000001205 233.0
LYD2_k127_4069000_14 HTH-like domain K07497 - - 0.000000000000000000000002737 105.0
LYD2_k127_4069000_16 Domain of unknown function (DUF3842) - - - 0.00000000000000000001764 94.0
LYD2_k127_4069000_17 PFAM membrane protein of K08972 - - 0.00000000000000001071 88.0
LYD2_k127_4069000_19 HTH-like domain K07497 - - 0.000000000003659 68.0
LYD2_k127_4069000_2 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 - 3.4.21.107 7.298e-221 693.0
LYD2_k127_4069000_20 PFAM Integrase catalytic region K07497 - - 0.0000000002195 64.0
LYD2_k127_4069000_21 PFAM Integrase catalytic region K07497 - - 0.0000000003601 61.0
LYD2_k127_4069000_22 COG2963 Transposase and inactivated derivatives K07483 - - 0.000006764 51.0
LYD2_k127_4069000_3 NmrA-like family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005029 580.0
LYD2_k127_4069000_4 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 532.0
LYD2_k127_4069000_5 Pas domain K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 502.0
LYD2_k127_4069000_6 beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 477.0
LYD2_k127_4069000_7 E1-E2 ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008353 425.0
LYD2_k127_4069000_8 Carotenoid biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 388.0
LYD2_k127_4069000_9 Cytochrome c K03611 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001398 282.0
LYD2_k127_4072129_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 1.714e-206 676.0
LYD2_k127_4072129_1 TonB dependent receptor K02014 - - 6.006e-198 637.0
LYD2_k127_4072129_10 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000594 227.0
LYD2_k127_4072129_11 Domain of unknown function (DUF309) K09763 - - 0.000000000000000000000000000000000000000000000000006641 187.0
LYD2_k127_4072129_14 Oxidoreductase - - - 0.00000000000004821 72.0
LYD2_k127_4072129_2 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00170 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 584.0
LYD2_k127_4072129_3 Methylenetetrahydrofolate reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 517.0
LYD2_k127_4072129_4 response regulator, receiver K03407,K07678,K14978 GO:0000155,GO:0000160,GO:0000302,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009636,GO:0009927,GO:0009987,GO:0010033,GO:0010035,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046677,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901700 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 486.0
LYD2_k127_4072129_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 461.0
LYD2_k127_4072129_6 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 432.0
LYD2_k127_4072129_7 phosphoprotein phosphatase activity K01525 GO:0003674,GO:0003824,GO:0004551,GO:0004721,GO:0006139,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0008796,GO:0008803,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015949,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0034641,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0140096,GO:1901360,GO:1901564 3.6.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 357.0
LYD2_k127_4072129_8 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000156 260.0
LYD2_k127_4072129_9 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000004336 245.0
LYD2_k127_408918_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004041 283.0
LYD2_k127_408918_1 ATPase activity - - - 0.000000000000000000000000000000000000000008892 159.0
LYD2_k127_408918_2 Pfam Integrase core domain - - - 0.0007 43.0
LYD2_k127_4102470_0 (ABC) transporter K15738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008962 608.0
LYD2_k127_4102470_1 Peptidyl-prolyl cis-trans isomerase K01802,K03772,K03773 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 325.0
LYD2_k127_4102470_2 Peptidyl-prolyl cis-trans isomerase K01802,K03772,K03773 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008361 294.0
LYD2_k127_4106767_0 MFS_1 like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005572 583.0
LYD2_k127_4106767_1 cytochrome C peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 568.0
LYD2_k127_4106767_2 Lumazine binding domain K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 325.0
LYD2_k127_4106767_3 pseudouridine synthase activity K06178,K06181 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.20,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 322.0
LYD2_k127_4169847_0 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 428.0
LYD2_k127_4169847_1 aerobic electron transport chain K00425,K08738 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000397 345.0
LYD2_k127_4169847_4 Evidence 4 Homologs of previously reported genes of K18912 - 1.14.99.50 0.0000000000000000000001575 101.0
LYD2_k127_4182289_0 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008428 593.0
LYD2_k127_4182289_1 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001169 287.0
LYD2_k127_4266567_0 Transposase DDE domain - - - 1.198e-198 628.0
LYD2_k127_4277917_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 445.0
LYD2_k127_4277917_1 nuclease - - - 0.0000000000000000000000000001099 122.0
LYD2_k127_4277917_2 Staphylococcal nuclease homologues - - - 0.00009953 48.0
LYD2_k127_4295001_0 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 342.0
LYD2_k127_4295001_1 Protein of unknown function DUF72 - - - 0.000006426 54.0
LYD2_k127_4337781_0 alanine dehydrogenase activity K00259 GO:0000286,GO:0001666,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009628,GO:0009653,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019752,GO:0030154,GO:0030312,GO:0030435,GO:0032502,GO:0036293,GO:0043436,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0055114,GO:0070482,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 542.0
LYD2_k127_4337781_1 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000000001634 189.0
LYD2_k127_4337781_2 - - - - 0.00000000000000000000000000000000000000001571 157.0
LYD2_k127_4337781_3 - - - - 0.00000000000000000002453 91.0
LYD2_k127_4337781_4 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000000000003871 69.0
LYD2_k127_4337781_5 - - - - 0.0002425 44.0
LYD2_k127_4344480_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 424.0
LYD2_k127_4344480_1 NADPH-dependent FMN reductase K03809 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001133 266.0
LYD2_k127_4344480_2 metalloendopeptidase activity K08602 - - 0.00000000000000000000000000000000000000000000000000001182 190.0
LYD2_k127_4344480_3 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000000000000000000006038 187.0
LYD2_k127_4344480_5 2 iron, 2 sulfur cluster binding K02192 GO:0003674,GO:0005488,GO:0048037,GO:0051536,GO:0051537,GO:0051540 - 0.00000000000000000009444 90.0
LYD2_k127_4345161_0 PFAM Alcohol dehydrogenase K13979 - - 4.979e-209 653.0
LYD2_k127_4345161_1 HTH-like domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000201 256.0
LYD2_k127_4345161_3 IMP dehydrogenase activity K07182 - - 0.0000000000000000000000000212 113.0
LYD2_k127_4345161_4 Transposase K07497 - - 0.00000000000000000000000006463 113.0
LYD2_k127_4345161_5 Protein of unknown function DUF72 - - - 0.000000000000000002955 85.0
LYD2_k127_4345161_6 Phage integrase family - - - 0.00000000000008541 77.0
LYD2_k127_4345161_7 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000006475 63.0
LYD2_k127_4345161_8 DNA integration - - - 0.0000001273 59.0
LYD2_k127_4364675_0 ATPase activity - - - 5.411e-278 860.0
LYD2_k127_4364675_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 297.0
LYD2_k127_4364675_3 cysteine-type peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006931 266.0
LYD2_k127_4372924_0 Aminomethyltransferase folate-binding domain K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 489.0
LYD2_k127_4372924_1 FIST C domain - GO:0008150,GO:0040007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 452.0
LYD2_k127_4372924_2 NUDIX domain K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000006603 248.0
LYD2_k127_4372924_3 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000001863 192.0
LYD2_k127_4455847_0 Belongs to the AB hydrolase superfamily. MetX family K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 537.0
LYD2_k127_4455847_1 - - - - 0.00000000000000000000000000000009481 126.0
LYD2_k127_4455847_2 DNA integration K14059 - - 0.00000000000000000001282 93.0
LYD2_k127_4455847_3 Belongs to the ompA family K03286 - - 0.00000000001337 65.0
LYD2_k127_4455847_4 leucine-zipper of insertion element IS481 K00986,K07497 - 2.7.7.49 0.0000000007142 65.0
LYD2_k127_4455847_5 - - - - 0.00000004144 59.0
LYD2_k127_4460397_0 Endoribonuclease that initiates mRNA decay K18682 - - 3.478e-252 786.0
LYD2_k127_4460397_1 Transglycosylase SLT domain K08309 - - 3.029e-241 767.0
LYD2_k127_4460397_10 Anthranilate synthase K01665 GO:0000162,GO:0000287,GO:0003674,GO:0003824,GO:0004049,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009108,GO:0009308,GO:0009309,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042398,GO:0042401,GO:0042430,GO:0042435,GO:0042558,GO:0042559,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046820,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 2.6.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 374.0
LYD2_k127_4460397_11 tRNA processing K06864,K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 361.0
LYD2_k127_4460397_12 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 346.0
LYD2_k127_4460397_13 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 315.0
LYD2_k127_4460397_14 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007111 265.0
LYD2_k127_4460397_15 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001148 259.0
LYD2_k127_4460397_16 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000002796 138.0
LYD2_k127_4460397_17 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000002149 125.0
LYD2_k127_4460397_18 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000000000000000000000001295 123.0
LYD2_k127_4460397_19 exodeoxyribonuclease VII activity K03602 - 3.1.11.6 0.000000000000000000000000001559 113.0
LYD2_k127_4460397_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 8.604e-228 713.0
LYD2_k127_4460397_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 2.179e-209 660.0
LYD2_k127_4460397_4 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 490.0
LYD2_k127_4460397_5 FAD binding domain K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005214 468.0
LYD2_k127_4460397_6 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 454.0
LYD2_k127_4460397_7 YmdB-like protein K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 437.0
LYD2_k127_4460397_8 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826,K02619 - 2.6.1.42,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 422.0
LYD2_k127_4460397_9 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009084 408.0
LYD2_k127_4461079_2 Diphthamide synthase - - - 0.000000000000000000003933 93.0
LYD2_k127_4461630_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.385e-303 933.0
LYD2_k127_4461630_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 4.254e-298 917.0
LYD2_k127_4461630_12 - K07275 - - 0.0000000000000000000000004983 113.0
LYD2_k127_4461630_13 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000009346 100.0
LYD2_k127_4461630_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 523.0
LYD2_k127_4461630_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004239 460.0
LYD2_k127_4461630_4 AAA domain, putative AbiEii toxin, Type IV TA system K09817,K09820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 429.0
LYD2_k127_4461630_5 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 407.0
LYD2_k127_4461630_6 Zinc-uptake complex component A periplasmic K09815,K09818 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 351.0
LYD2_k127_4461630_7 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000009445 238.0
LYD2_k127_4461630_8 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000002836 202.0
LYD2_k127_4461630_9 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000001293 183.0
LYD2_k127_4465724_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798,K04076,K13525,K17681 - 3.4.21.53 1.194e-274 855.0
LYD2_k127_4465724_1 integral membrane protein - - - 0.000000000000000000000000000000000000002225 154.0
LYD2_k127_4465724_2 Mycolic acid cyclopropane synthetase - - - 0.0001691 49.0
LYD2_k127_4466718_0 Surface antigen K07277 - - 2.313e-297 920.0
LYD2_k127_4466718_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 469.0
LYD2_k127_4466718_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 459.0
LYD2_k127_4466718_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 445.0
LYD2_k127_4466718_4 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 421.0
LYD2_k127_4466718_5 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000002375 258.0
LYD2_k127_4466718_6 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.00000000000000000000000000000000000000000000000000000000007627 209.0
LYD2_k127_4466718_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.000000000000000000000000000000000000000000000000009735 186.0
LYD2_k127_4470576_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 3.084e-246 772.0
LYD2_k127_4470576_1 MMPL family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 536.0
LYD2_k127_4470576_10 acyl carrier protein K02078 - - 0.00000000000000000000003005 102.0
LYD2_k127_4470576_11 AMP-binding enzyme - - - 0.000000000000000002199 91.0
LYD2_k127_4470576_12 KaiB K08481 - - 0.000000000005369 71.0
LYD2_k127_4470576_2 Pfam:KaiC K08482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 466.0
LYD2_k127_4470576_3 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 368.0
LYD2_k127_4470576_4 Bacterial lipid A biosynthesis acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 306.0
LYD2_k127_4470576_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009644 279.0
LYD2_k127_4470576_6 Belongs to the beta-ketoacyl-ACP synthases family K00647,K09458 - 2.3.1.179,2.3.1.41 0.00000000000000000000000000000000000000000000000000000003048 205.0
LYD2_k127_4470576_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000008476 197.0
LYD2_k127_4470576_8 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000005771 177.0
LYD2_k127_4470576_9 Fatty acyl CoA synthetase - - - 0.000000000000000000000000000006047 129.0
LYD2_k127_4470887_0 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 529.0
LYD2_k127_4470887_1 regulation of translation K03704,K05809 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001417 253.0
LYD2_k127_4470887_2 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002427 243.0
LYD2_k127_4470887_3 adenylylsulfate kinase activity K00860,K00955 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000006824 237.0
LYD2_k127_4470887_4 cheY-homologous receiver domain - - - 0.0002794 47.0
LYD2_k127_4470887_5 AAA domain - - - 0.0005081 44.0
LYD2_k127_4472507_0 4-alpha-glucanotransferase K00705 - 2.4.1.25 2.085e-275 866.0
LYD2_k127_4472507_1 Sigma-54 interaction domain K07714 - - 1.482e-215 681.0
LYD2_k127_4472507_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009275 471.0
LYD2_k127_4472507_3 hmm pf02371 K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003811 283.0
LYD2_k127_4472507_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000635 273.0
LYD2_k127_4472507_5 sequence-specific DNA binding - - - 0.00000000000000000000000000000006008 128.0
LYD2_k127_4472507_6 Transposase IS116 IS110 IS902 family protein K07486 - - 0.0000000000000000000003886 96.0
LYD2_k127_4472507_7 transposase IS116 IS110 IS902 family K07486 - - 0.0000000000000000001204 90.0
LYD2_k127_4475158_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K06147,K11085 - - 6.462e-221 691.0
LYD2_k127_4475158_1 translation initiation factor activity K02316,K13590,K20541 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 531.0
LYD2_k127_4475158_10 Peptidase membrane zinc metallopeptidase K06973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009289 260.0
LYD2_k127_4475158_13 Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity K14540 - - 0.000000000000000000000000002431 113.0
LYD2_k127_4475158_15 Belongs to the 'phage' integrase family - - - 0.000000002453 63.0
LYD2_k127_4475158_2 Glutathione S-transferase K00799,K07393 GO:0003674,GO:0003824,GO:0004364,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016672,GO:0016740,GO:0016765,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.8.5.7,2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008231 503.0
LYD2_k127_4475158_3 aldo-keto reductase (NADP) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 452.0
LYD2_k127_4475158_4 NADH dehydrogenase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006686 434.0
LYD2_k127_4475158_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 422.0
LYD2_k127_4475158_6 PFAM TrkA-C domain protein K11105 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005217 407.0
LYD2_k127_4475158_7 PFAM Methylated-DNA- protein -cysteine S-methyltransferase DNA binding K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 326.0
LYD2_k127_4475158_8 lipid binding K03098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 294.0
LYD2_k127_4475158_9 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006429 296.0
LYD2_k127_4475420_0 Molydopterin dinucleotide binding domain K00123 - 1.17.1.9 0.0 1258.0
LYD2_k127_4475420_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 576.0
LYD2_k127_4475420_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000003449 90.0
LYD2_k127_4480686_0 Nitroreductase - - - 1.016e-283 881.0
LYD2_k127_4480686_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 325.0
LYD2_k127_4480686_4 phosphorelay signal transduction system K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000005983 178.0
LYD2_k127_4480686_5 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000001752 176.0
LYD2_k127_4480686_7 Lipid A 3-O-deacylase (PagL) - - - 0.0000000000000006931 85.0
LYD2_k127_4480712_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 358.0
LYD2_k127_4480712_1 Peptidase M15 K02395 - - 0.00000000000000000000000000000000000000000000000000000000000002253 220.0
LYD2_k127_4484182_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.147e-317 978.0
LYD2_k127_4484182_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 3.196e-202 638.0
LYD2_k127_4484182_11 bacterial (prokaryotic) histone like domain K05788 - - 0.000000000000000000000000000000000000000000000003265 175.0
LYD2_k127_4484182_15 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000135 95.0
LYD2_k127_4484182_2 NeuB family K03856 - 2.5.1.54 3.345e-197 617.0
LYD2_k127_4484182_3 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006881 571.0
LYD2_k127_4484182_4 Proto-chlorophyllide reductase 57 kD subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006973 492.0
LYD2_k127_4484182_5 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 445.0
LYD2_k127_4484182_6 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004272 444.0
LYD2_k127_4484182_7 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008129 390.0
LYD2_k127_4484182_8 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 298.0
LYD2_k127_4484182_9 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006556 281.0
LYD2_k127_4484785_0 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000003782 194.0
LYD2_k127_4487981_0 Pup-ligase protein K20814 - 3.5.1.119 2.693e-271 840.0
LYD2_k127_4487981_1 Proteasome subunit K03433 - 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000007594 202.0
LYD2_k127_4487981_2 Proteasomal ATPase OB/ID domain K13527 - - 0.00000000000000000000000000000000000000000001337 163.0
LYD2_k127_4487981_3 May function as a protein modifier covalently attached to lysine residues of substrate proteins. This may serve to target the modified proteins for degradation by proteasomes - - - 0.0000000000000000000000009095 108.0
LYD2_k127_4488116_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1525.0
LYD2_k127_4488116_1 helicase activity - - - 2.109e-237 738.0
LYD2_k127_4488116_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 413.0
LYD2_k127_4488116_3 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 294.0
LYD2_k127_4488116_4 Protein conserved in bacteria K09922 - - 0.000000000000000000000000000000000000000415 149.0
LYD2_k127_4488116_5 Protein conserved in bacteria K09922 - - 0.00000000621 56.0
LYD2_k127_4488116_6 nuclease activity - - - 0.0000008334 55.0
LYD2_k127_4492205_0 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 378.0
LYD2_k127_4492205_1 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000008025 143.0
LYD2_k127_4497961_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000146 229.0
LYD2_k127_4497961_1 Domain of Unknown Function (DUF326) - - - 0.00000000000000000000000000000000000000000000374 166.0
LYD2_k127_4497961_2 TupA-like ATPgrasp - - - 0.0000000000000000000000000000000000001159 154.0
LYD2_k127_4497961_3 phosphorelay signal transduction system - - - 0.000000000000000000000000000000001777 134.0
LYD2_k127_4497961_4 Methyltransferase domain - - - 0.00000000000000000000006651 108.0
LYD2_k127_4497961_5 pyridine nucleotide-disulphide oxidoreductase K00362,K07001 - 1.7.1.15 0.00000000000000009077 83.0
LYD2_k127_4497961_6 PFAM nuclease (SNase domain protein) - - - 0.0000000000001462 71.0
LYD2_k127_4503349_0 Evidence 5 No homology to any previously reported sequences K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 519.0
LYD2_k127_4503349_1 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006287 309.0
LYD2_k127_4503349_2 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000001387 159.0
LYD2_k127_4512675_0 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 7.225e-229 724.0
LYD2_k127_4512675_1 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 343.0
LYD2_k127_4512675_2 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000000000004458 200.0
LYD2_k127_4512675_3 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000009835 140.0
LYD2_k127_4512675_4 Transcriptional regulator - - - 0.000000007071 57.0
LYD2_k127_4513005_0 Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 1.161e-230 721.0
LYD2_k127_4513005_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 345.0
LYD2_k127_4513005_3 - - - - 0.00000000000000000000000000000000000000000002531 162.0
LYD2_k127_4515361_0 electron transfer activity K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 423.0
LYD2_k127_4515361_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006089 353.0
LYD2_k127_4515361_2 Major facilitator Superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 347.0
LYD2_k127_4515361_3 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K00567,K01247 - 2.1.1.63,3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 325.0
LYD2_k127_4515361_4 oxidation-reduction process - - - 0.000000000000000000000000000000000000000000000000000000000000005425 218.0
LYD2_k127_4515361_5 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000000000000000000000000000001922 209.0
LYD2_k127_4515523_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 3.466e-218 681.0
LYD2_k127_4515523_1 Domain of unknown function (DUF3463) - - - 2.325e-209 652.0
LYD2_k127_4515523_2 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000002048 241.0
LYD2_k127_4515523_4 - - - - 0.000000000000000000000000000000000000000000001674 168.0
LYD2_k127_4515523_5 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000341 94.0
LYD2_k127_4520468_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 3.113e-221 702.0
LYD2_k127_4520468_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 354.0
LYD2_k127_4520468_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000000002674 164.0
LYD2_k127_4520468_4 Protein involved in outer membrane biogenesis K07289 - - 0.00001872 47.0
LYD2_k127_4521979_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.888e-241 753.0
LYD2_k127_4521979_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008148 362.0
LYD2_k127_4521979_10 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000009489 189.0
LYD2_k127_4521979_11 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000000001443 184.0
LYD2_k127_4521979_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000001378 161.0
LYD2_k127_4521979_13 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000002062 129.0
LYD2_k127_4521979_14 30S ribosomal protein S14 K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000083 115.0
LYD2_k127_4521979_15 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000001061 90.0
LYD2_k127_4521979_16 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000008718 79.0
LYD2_k127_4521979_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 322.0
LYD2_k127_4521979_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 304.0
LYD2_k127_4521979_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 297.0
LYD2_k127_4521979_5 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002475 257.0
LYD2_k127_4521979_6 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004057 258.0
LYD2_k127_4521979_7 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000006202 232.0
LYD2_k127_4521979_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000006594 230.0
LYD2_k127_4521979_9 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000009212 202.0
LYD2_k127_4523244_0 Tetratricopeptide repeat - - - 2.908e-232 726.0
LYD2_k127_4523244_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 589.0
LYD2_k127_4523244_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 540.0
LYD2_k127_4523244_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 386.0
LYD2_k127_4523244_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000000000000001098 252.0
LYD2_k127_4523244_5 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000005075 193.0
LYD2_k127_4523244_6 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.00000000000000000000000000000000000000000001748 163.0
LYD2_k127_4523244_7 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000434 152.0
LYD2_k127_4523244_8 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000000057 150.0
LYD2_k127_4523244_9 E3 Ubiquitin ligase - - - 0.000000000000000000009076 105.0
LYD2_k127_4528487_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 348.0
LYD2_k127_4528487_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000004064 198.0
LYD2_k127_4528487_2 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000001291 180.0
LYD2_k127_4528487_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000001276 122.0
LYD2_k127_4534022_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 524.0
LYD2_k127_4534022_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005569 386.0
LYD2_k127_4534022_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 333.0
LYD2_k127_4534022_3 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007401 322.0
LYD2_k127_4534022_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 288.0
LYD2_k127_4534022_5 phosphorelay signal transduction system K02667 - - 0.00000000000000000000000000000000000000000000000000000000000002601 216.0
LYD2_k127_4534022_6 thiolester hydrolase activity K11750 - - 0.000000000000000000000000000000000000000000004109 173.0
LYD2_k127_4536942_0 ABC transporter K06158 - - 2.112e-315 974.0
LYD2_k127_4536942_1 MgsA AAA+ ATPase C terminal K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 451.0
LYD2_k127_4536942_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.00000000000000000000000009687 107.0
LYD2_k127_4545295_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 338.0
LYD2_k127_4545295_1 Protein of unknown function (DUF3443) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003183 274.0
LYD2_k127_4545295_10 PFAM nuclease (SNase domain protein) - - - 0.000000000000005612 76.0
LYD2_k127_4545295_11 Transposase DDE domain - - - 0.000000000001773 67.0
LYD2_k127_4545295_12 SnoaL-like domain - - - 0.00000000005278 66.0
LYD2_k127_4545295_13 Staphylococcal nuclease homologues K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0000000005509 65.0
LYD2_k127_4545295_14 Transposase - - - 0.0000004489 52.0
LYD2_k127_4545295_15 Helix-hairpin-helix motif - - - 0.000004436 49.0
LYD2_k127_4545295_16 - - - - 0.0000439 46.0
LYD2_k127_4545295_17 Large extracellular alpha-helical protein - - - 0.0001027 56.0
LYD2_k127_4545295_18 repeat protein - - - 0.0001353 55.0
LYD2_k127_4545295_4 Transposase proposed to express due to -1 translational frameshift at the sequence 5'-AAAAAC-3' - - - 0.0000000000000000000000000000000000000000000000000009414 187.0
LYD2_k127_4545295_5 MOSC N-terminal beta barrel domain K07140 - - 0.0000000000000000000000000000000000000000000000543 179.0
LYD2_k127_4545295_6 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.0000000000000000000000000000000000000000000003112 171.0
LYD2_k127_4545295_7 Protein of unknown function (DUF2844) - - - 0.000000000000000000002958 99.0
LYD2_k127_4545295_8 nuclease - - - 0.0000000000000005319 85.0
LYD2_k127_4545295_9 Transposase - - - 0.00000000000000415 76.0
LYD2_k127_4565153_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005538 321.0
LYD2_k127_4565153_1 - - - - 0.00000000000000001113 93.0
LYD2_k127_4565153_3 sequence-specific DNA binding K07729,K15773 - - 0.0000001766 56.0
LYD2_k127_4567521_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000715 384.0
LYD2_k127_4567521_1 Histidine kinase K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 286.0
LYD2_k127_4567521_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000765 258.0
LYD2_k127_4567521_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001151 251.0
LYD2_k127_4567521_4 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001877 239.0
LYD2_k127_4567521_5 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000000000000004106 180.0
LYD2_k127_4567521_6 - - - - 0.00000000000000000000000609 106.0
LYD2_k127_4570046_0 Belongs to the thiolase family K00626 - 2.3.1.9 1.207e-195 616.0
LYD2_k127_4570046_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008075 564.0
LYD2_k127_4570046_10 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000002323 204.0
LYD2_k127_4570046_11 IMP dehydrogenase activity K09137 - - 0.000000000000000000000000000000000000000000161 164.0
LYD2_k127_4570046_12 2-methylcitrate dehydratase activity K01720 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009268,GO:0009628,GO:0009987,GO:0010447,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019679,GO:0019752,GO:0030312,GO:0032787,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046459,GO:0047547,GO:0050896,GO:0071704,GO:0071944,GO:0072329,GO:1901575 4.2.1.79 0.000000000000000000000000000000000000000001609 157.0
LYD2_k127_4570046_13 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000004534 167.0
LYD2_k127_4570046_14 membrane transporter protein K07090 - - 0.00000000004264 67.0
LYD2_k127_4570046_15 Membrane - - - 0.0000004773 57.0
LYD2_k127_4570046_16 Alpha-beta hydrolase superfamily - - - 0.00006954 55.0
LYD2_k127_4570046_2 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 477.0
LYD2_k127_4570046_3 COG0491 Zn-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 458.0
LYD2_k127_4570046_4 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005652 445.0
LYD2_k127_4570046_5 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 401.0
LYD2_k127_4570046_6 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 329.0
LYD2_k127_4570046_8 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000131 212.0
LYD2_k127_4570046_9 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000008789 203.0
LYD2_k127_4579885_0 Aminotransferase class-III K00823,K03918,K20428,K20435 - 2.6.1.19,2.6.1.33,2.6.1.36 3.352e-253 790.0
LYD2_k127_4579885_1 twitching motility protein K02670 - - 5.834e-205 644.0
LYD2_k127_4579885_10 response regulator K07684 - - 0.0000000000000000001002 94.0
LYD2_k127_4579885_11 Surface antigen - - - 0.00000001178 61.0
LYD2_k127_4579885_12 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000001397 59.0
LYD2_k127_4579885_2 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006847 444.0
LYD2_k127_4579885_3 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 434.0
LYD2_k127_4579885_4 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 378.0
LYD2_k127_4579885_5 response regulator K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000106 265.0
LYD2_k127_4579885_6 L-methionine salvage from methylthioadenosine K00058,K08966 - 1.1.1.399,1.1.1.95,3.1.3.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000004563 263.0
LYD2_k127_4579885_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000304 262.0
LYD2_k127_4579885_8 Surface antigen - - - 0.0000000000000000000000000000000000000000000000000000000000000001828 238.0
LYD2_k127_4579885_9 Cytochrome c K00405 - - 0.000000000000000000000000000000000000000000005162 168.0
LYD2_k127_45846_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 3.726e-312 967.0
LYD2_k127_45846_1 Rieske (2fe-2S) - - - 9.636e-203 641.0
LYD2_k127_45846_2 Male sterility protein K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 490.0
LYD2_k127_45846_3 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 312.0
LYD2_k127_45846_5 Sulfurtransferase TusA - - - 0.00000000000000000000000000000000000000551 146.0
LYD2_k127_45846_6 - - - - 0.000000000000000003405 94.0
LYD2_k127_4590730_0 Helix-turn-helix - - - 0.0000543 48.0
LYD2_k127_4595385_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 2.093e-277 868.0
LYD2_k127_4595385_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.584e-225 706.0
LYD2_k127_4595385_10 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.00000000000000000000000000002003 121.0
LYD2_k127_4595385_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.109e-210 664.0
LYD2_k127_4595385_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 300.0
LYD2_k127_4595385_4 ATP synthase K02115 - - 0.000000000000000000000000000000000000000000000000000000000000001568 228.0
LYD2_k127_4595385_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000000000000000000000003647 196.0
LYD2_k127_4595385_6 epsilon subunit K02114 - - 0.00000000000000000000000000000000000000000004625 165.0
LYD2_k127_4595385_7 identical protein binding K07285 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0016020,GO:0019867,GO:0042802 - 0.0000000000000000000000000000000000000005864 155.0
LYD2_k127_4595385_8 Cytochrome b/b6/petB K00412,K03888 - - 0.0000000000000000000000000000000000000007655 149.0
LYD2_k127_4595385_9 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000156 133.0
LYD2_k127_4616569_0 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701 456.0
LYD2_k127_4616569_1 transmembrane transport K02532,K05820,K08167,K08218,K08369 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 453.0
LYD2_k127_4616569_10 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.0001622 51.0
LYD2_k127_4616569_2 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 418.0
LYD2_k127_4616569_3 Belongs to the glutathione peroxidase family K00432,K20207 - 1.11.1.22,1.11.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 299.0
LYD2_k127_4616569_5 - K14588 - - 0.0000000000000000000000000000000000000000003263 162.0
LYD2_k127_4616569_7 Squalene/phytoene synthase K00801 - 2.5.1.21 0.000000000000000000000000003081 114.0
LYD2_k127_4616569_8 nuclease activity K18828 - - 0.0000000001983 63.0
LYD2_k127_4616671_0 glutamate dehydrogenase [NAD(P)+] activity K00261,K00262 - 1.4.1.3,1.4.1.4 4.528e-227 707.0
LYD2_k127_4616671_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 419.0
LYD2_k127_4616671_2 lipoyl(octanoyl) transferase activity K03644,K03801 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0016874,GO:0016879,GO:0016979,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019752,GO:0032787,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048519,GO:0050789,GO:0051186,GO:0051188,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.3.1.181,2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000005535 254.0
LYD2_k127_4625489_0 periplasmic K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.000000000000000005298 92.0
LYD2_k127_4625489_1 CsbD-like - - - 0.0000000000000008793 80.0
LYD2_k127_4625489_2 Beta/Gamma crystallin - - - 0.000000001376 63.0
LYD2_k127_4635734_0 Aconitase C-terminal domain K01681 - 4.2.1.3 0.0 1062.0
LYD2_k127_4635734_1 Belongs to the citrate synthase family K01902,K15230,K15233 - 2.3.3.8,6.2.1.5 3.475e-308 945.0
LYD2_k127_4641391_0 Glycosyl hydrolase family 57 - - - 0.0 1056.0
LYD2_k127_4641391_1 phosphorelay signal transduction system - - - 1.815e-204 645.0
LYD2_k127_4641391_2 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000638 565.0
LYD2_k127_4641391_3 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 524.0
LYD2_k127_4641391_4 Nucleotidyl transferase K00966 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009536 371.0
LYD2_k127_4641391_5 - - - - 0.000000000000000000000000000003286 124.0
LYD2_k127_4641391_6 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.0000001271 55.0
LYD2_k127_4661523_0 Sigma-54 interaction domain K07714 - - 3.692e-248 771.0
LYD2_k127_4661523_1 Cytochrome c7 and related cytochrome c - - - 5.587e-201 643.0
LYD2_k127_4661523_11 His Kinase A (phosphoacceptor) domain - - - 0.000686 44.0
LYD2_k127_4661523_2 4fe-4S ferredoxin, iron-sulfur binding domain protein K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 492.0
LYD2_k127_4661523_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 426.0
LYD2_k127_4661523_4 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 309.0
LYD2_k127_4661523_5 Cytochrome c-type biogenesis protein K02200 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 307.0
LYD2_k127_4661523_6 sister chromatid segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001002 261.0
LYD2_k127_4661523_7 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001821 243.0
LYD2_k127_4661523_8 cellulase activity - - - 0.000000000000000000000002106 119.0
LYD2_k127_4661523_9 Sel1-like repeats. K07126 - - 0.000000000000000000000007415 109.0
LYD2_k127_4690750_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1577.0
LYD2_k127_4690750_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 5.257e-248 774.0
LYD2_k127_4690750_2 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 9.538e-218 678.0
LYD2_k127_4690750_3 MacB-like periplasmic core domain K02004 - - 5.337e-210 659.0
LYD2_k127_4690750_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009693 499.0
LYD2_k127_4690750_5 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP) K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 385.0
LYD2_k127_4690750_6 Evidence 2b Function of strongly homologous gene K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 358.0
LYD2_k127_4690750_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000989 280.0
LYD2_k127_4690750_8 photosystem II stabilization K02237 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004097 260.0
LYD2_k127_4690750_9 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000000000000000000000000155 246.0
LYD2_k127_4707341_0 Proteasomal ATPase OB/ID domain K13527 - - 8.491e-214 672.0
LYD2_k127_4707341_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K08070 - 1.3.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 533.0
LYD2_k127_4707341_2 PFAM metal-dependent phosphohydrolase, HD sub domain K01524,K07012 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 407.0
LYD2_k127_4707341_3 KAP family P-loop domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 398.0
LYD2_k127_4707341_4 Evidence 5 No homology to any previously reported sequences K02450,K07126 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004297 326.0
LYD2_k127_4707341_5 Two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.000000000000000000000000000000000000000000000000000000000000000000009514 263.0
LYD2_k127_4707341_7 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000199 204.0
LYD2_k127_4707341_8 bis(5'-adenosyl)-triphosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000589 195.0
LYD2_k127_4707341_9 acetyltransferase - - - 0.0000000000000000000000000000000000000000001615 164.0
LYD2_k127_4714181_0 depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005667 344.0
LYD2_k127_4714181_1 alcohol dehydrogenase K00001,K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 313.0
LYD2_k127_4714181_2 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.0000000000000000000000000000000000000008252 149.0
LYD2_k127_4714181_3 prohibitin homologues - - - 0.000000000000000000000008367 112.0
LYD2_k127_4714181_4 Peptidase family M50 K11749 GO:0008150,GO:0040007 - 0.0007019 51.0
LYD2_k127_4717560_0 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000951 469.0
LYD2_k127_4717560_1 XdhC and CoxI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 298.0
LYD2_k127_4717560_2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141,K19190 - 1.1.1.328,2.7.7.76 0.0000000000000000000000000000000000000000000000000005292 194.0
LYD2_k127_4717560_3 Tetratricopeptide repeat - - - 0.0002279 49.0
LYD2_k127_4726258_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 527.0
LYD2_k127_4726258_1 Lysine-2,3-aminomutase K01843 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 491.0
LYD2_k127_4726258_2 glutathione transferase activity K00799 - 2.5.1.18 0.00000000000000000000000000000005531 126.0
LYD2_k127_4732127_0 nuclease - - - 0.00000000000007144 72.0
LYD2_k127_4732127_1 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.0000000000008992 76.0
LYD2_k127_4732127_2 Protein of unknown function DUF72 - - - 0.000000004259 62.0
LYD2_k127_4732127_4 domain protein K20276 - - 0.00003851 51.0
LYD2_k127_4732127_7 Hsp20/alpha crystallin family - - - 0.0006343 43.0
LYD2_k127_4732127_8 cheY-homologous receiver domain - - - 0.0006574 46.0
LYD2_k127_4740658_0 Animal haem peroxidase - - - 3.632e-218 687.0
LYD2_k127_4746286_0 Di-haem oxidoreductase, putative peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 379.0
LYD2_k127_4746286_1 oxidoreductase activity K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003825 293.0
LYD2_k127_4746286_2 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000005047 173.0
LYD2_k127_4751098_0 Heat shock 70 kDa protein K04043 - - 0.0 1112.0
LYD2_k127_4751098_1 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 362.0
LYD2_k127_4751098_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004472 242.0
LYD2_k127_4751098_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000003126 213.0
LYD2_k127_4751098_4 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000001878 207.0
LYD2_k127_4751098_5 23S rRNA-intervening sequence protein - - - 0.000000000000001354 77.0
LYD2_k127_4752112_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002974 319.0
LYD2_k127_4752112_1 TPM domain K06872 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 297.0
LYD2_k127_4752112_2 Membrane K08988 - - 0.00000000000000000003926 100.0
LYD2_k127_4766871_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000000000000000000000000000000000000000004788 175.0
LYD2_k127_4766871_1 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000000000000000000000000000000001821 171.0
LYD2_k127_4773804_0 tRNA thio-modification K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 551.0
LYD2_k127_4773804_1 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000538 494.0
LYD2_k127_4773804_12 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000001221 112.0
LYD2_k127_4773804_2 pectinesterase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 436.0
LYD2_k127_4773804_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 433.0
LYD2_k127_4773804_4 Domain of unknown function (DUF1730) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 428.0
LYD2_k127_4773804_5 phosphorelay signal transduction system K02481,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 428.0
LYD2_k127_4773804_6 carboxylic acid catabolic process K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005397 342.0
LYD2_k127_4773804_7 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000279 265.0
LYD2_k127_4773804_8 - K11477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001129 243.0
LYD2_k127_4773804_9 negative regulation of translational initiation K05554,K14670,K15886 - 2.3.1.235 0.00000000000000000000000000000000000000000000000000001598 198.0
LYD2_k127_4780183_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 372.0
LYD2_k127_4780183_1 Sodium/calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 289.0
LYD2_k127_4780183_2 Regulatory protein, FmdB family - - - 0.00000000000000000000000000004181 117.0
LYD2_k127_4784556_0 DUF based on E. rectale Gene description (DUF3880) K06320 - - 7.217e-227 718.0
LYD2_k127_4784556_1 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 607.0
LYD2_k127_4784556_2 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003321 385.0
LYD2_k127_4784556_3 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843,K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 300.0
LYD2_k127_4789075_0 - - - - 0.000000000000000000000000000000000000000001011 159.0
LYD2_k127_4790287_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 590.0
LYD2_k127_4790287_1 fructose-bisphosphate aldolase activity K01622 - 3.1.3.11,4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 386.0
LYD2_k127_4795759_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 565.0
LYD2_k127_4795759_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 538.0
LYD2_k127_4795759_2 Acyl transferase domain K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 320.0
LYD2_k127_4800518_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 5e-324 1017.0
LYD2_k127_4800518_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 457.0
LYD2_k127_4800518_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 350.0
LYD2_k127_4800518_3 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 318.0
LYD2_k127_4800518_4 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0031004,GO:0031224,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 0.0000000000000000000000000000000000000000000000000001892 191.0
LYD2_k127_4800518_6 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.000000000005501 69.0
LYD2_k127_4814778_0 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 458.0
LYD2_k127_4814778_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005313 450.0
LYD2_k127_4817142_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 526.0
LYD2_k127_4817142_1 Protein of unknown function (DUF692) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 504.0
LYD2_k127_4817142_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05541 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 467.0
LYD2_k127_4817142_3 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009961 440.0
LYD2_k127_4817142_4 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 366.0
LYD2_k127_4817142_5 signal-transduction protein containing cAMP-binding and CBS domains K00031,K14446 - 1.1.1.42,1.3.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000001796 248.0
LYD2_k127_4817142_6 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000003386 163.0
LYD2_k127_4817142_7 maF-like protein K03215,K06287 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0030312,GO:0036218,GO:0036221,GO:0042802,GO:0043167,GO:0043169,GO:0044464,GO:0046872,GO:0046914,GO:0047429,GO:0071944 2.1.1.190 0.00000000000000000000000006847 111.0
LYD2_k127_4819057_0 Phage integrase, N-terminal SAM-like domain - - - 0.00000000000000000000000000000000000000000002443 167.0
LYD2_k127_4819057_1 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000002091 124.0
LYD2_k127_4819057_4 Cro/C1-type HTH DNA-binding domain - - - 0.00007814 47.0
LYD2_k127_4821719_0 cellulose binding - - - 3.264e-240 744.0
LYD2_k127_4821719_1 sequence-specific DNA binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 464.0
LYD2_k127_4821719_10 Protein conserved in bacteria K09984 - - 0.00000000000000000000000000000000000000000000000000002567 189.0
LYD2_k127_4821719_11 Mo-molybdopterin cofactor metabolic process K03636,K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000006109 168.0
LYD2_k127_4821719_12 YCII-related domain - - - 0.000000000000000000000000000000000000000008061 157.0
LYD2_k127_4821719_13 protein deglycase activity - - - 0.00000000000000000000000000000005035 127.0
LYD2_k127_4821719_14 SnoaL-like domain - - - 0.000000000000000000004043 94.0
LYD2_k127_4821719_15 protein deglycase activity - - - 0.00000000000000002791 82.0
LYD2_k127_4821719_16 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000006527 60.0
LYD2_k127_4821719_17 protein deglycase activity - - - 0.000003476 48.0
LYD2_k127_4821719_18 SnoaL-like domain - - - 0.000009069 47.0
LYD2_k127_4821719_2 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 441.0
LYD2_k127_4821719_3 Protein of unknown function (DUF1579) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 332.0
LYD2_k127_4821719_4 EcsC protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 301.0
LYD2_k127_4821719_5 3-demethylubiquinone-9 3-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005441 272.0
LYD2_k127_4821719_6 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004371 243.0
LYD2_k127_4821719_7 amine dehydrogenase activity K01406 - 3.4.24.40 0.000000000000000000000000000000000000000000000000000000000000001085 221.0
LYD2_k127_4821719_8 YCII-related domain - - - 0.00000000000000000000000000000000000000000000000000000000000005126 215.0
LYD2_k127_4821719_9 translation initiation factor activity K06996 - - 0.0000000000000000000000000000000000000000000000000000000000008389 212.0
LYD2_k127_4827337_0 Peptidase family M23 K21471 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 460.0
LYD2_k127_4827337_1 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008258 347.0
LYD2_k127_4827337_2 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000727 329.0
LYD2_k127_4827337_3 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 288.0
LYD2_k127_4827337_4 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001583 285.0
LYD2_k127_4827337_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000003226 191.0
LYD2_k127_4827337_6 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000006179 180.0
LYD2_k127_4827337_7 ribosome binding K02860 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000001572 167.0
LYD2_k127_4827337_8 Uncharacterised protein family UPF0102 K07460 - - 0.0000000000000000000000000000000000000000002122 164.0
LYD2_k127_4849095_0 sigma factor activity K03088 - - 2.079e-196 619.0
LYD2_k127_4849095_1 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 469.0
LYD2_k127_4849095_2 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 439.0
LYD2_k127_4849095_3 reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000002007 250.0
LYD2_k127_4849095_4 amine dehydrogenase activity K01406 - 3.4.24.40 0.00000000000000000000000000000000000000000000000000000007365 196.0
LYD2_k127_4849095_5 peroxiredoxin activity K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000038 176.0
LYD2_k127_4849095_6 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.000000000000000000000000000000000000000008458 155.0
LYD2_k127_4849095_7 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000002873 85.0
LYD2_k127_4849095_8 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000006748 76.0
LYD2_k127_4849095_9 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000001079 55.0
LYD2_k127_485773_0 - - - - 0.000000000000000000000000000000000000009416 145.0
LYD2_k127_485773_1 Endonuclease containing a URI domain K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.0000000000000000000000001656 109.0
LYD2_k127_4865707_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 461.0
LYD2_k127_4865707_1 PFAM Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 436.0
LYD2_k127_4865707_2 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000001074 162.0
LYD2_k127_4865707_3 Protein of unknown function (DUF3703) - - - 0.0000000000000000000000000000000000000004868 151.0
LYD2_k127_4865707_4 - - - - 0.0000000000004685 75.0
LYD2_k127_4877785_0 belongs to the aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 2.834e-290 909.0
LYD2_k127_4877785_1 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 409.0
LYD2_k127_4877785_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 293.0
LYD2_k127_4908813_1 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.0000000000000000000000000000000000000000000000000007997 188.0
LYD2_k127_4908813_2 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.00000000000000000000000000000000000000000000009327 172.0
LYD2_k127_4908813_3 Domain of unknown function (DUF1844) - - - 0.0000000000000000000000000000000000000003398 153.0
LYD2_k127_4914729_0 Sodium Bile acid symporter family K03453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 507.0
LYD2_k127_4914729_1 Hypothetical methyltransferase K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007533 362.0
LYD2_k127_4914729_10 VIT family - - - 0.00000009445 53.0
LYD2_k127_4914729_11 PFAM nuclease (SNase domain protein) - - - 0.0000008931 52.0
LYD2_k127_4914729_12 cheY-homologous receiver domain - - - 0.00007211 49.0
LYD2_k127_4914729_2 Psort location Extracellular, score K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 330.0
LYD2_k127_4914729_3 lactoylglutathione lyase activity K08234 - - 0.00000000000000000000000000000000000000000000000000000000006857 205.0
LYD2_k127_4914729_4 CHAD - - - 0.00000000000000000000000000000000000000000000000000001085 207.0
LYD2_k127_4914729_5 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000000000005349 173.0
LYD2_k127_4914729_6 helix_turn_helix, Arsenical Resistance Operon Repressor K03892,K21903 - - 0.00000000000000000000000000001804 120.0
LYD2_k127_4914729_7 - - - - 0.00000000000000000008285 93.0
LYD2_k127_4937722_0 SMART PAS domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002531 290.0
LYD2_k127_4937722_1 Product type r regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000001016 235.0
LYD2_k127_4937722_2 Trypsin - - - 0.0000000000000000000000000000000000000000000000000000000000000001525 237.0
LYD2_k127_4937722_3 AMP binding K11932 - - 0.000000000000000000000000000000000000005229 150.0
LYD2_k127_4937722_4 phosphorelay signal transduction system - - - 0.00000000000000000003104 95.0
LYD2_k127_4963869_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008095 579.0
LYD2_k127_4963869_1 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 464.0
LYD2_k127_5027039_0 Aminotransferase class-III K01845 - 5.4.3.8 2.662e-208 654.0
LYD2_k127_5027039_1 PLD-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 351.0
LYD2_k127_5029571_0 Protein involved in outer membrane biogenesis K07289 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 502.0
LYD2_k127_5029571_1 response to heat K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 318.0
LYD2_k127_5029571_2 2 iron, 2 sulfur cluster binding K13643 - - 0.000000000000000000000000000000000000000000000000000000000000002027 220.0
LYD2_k127_5029571_3 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000008583 175.0
LYD2_k127_5029571_4 Belongs to the peptidase S8 family - - - 0.0003162 49.0
LYD2_k127_5048682_0 B-1 B cell differentiation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004355 565.0
LYD2_k127_5048682_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 316.0
LYD2_k127_5048682_2 Peptidoglycan-synthase activator LpoB K07337 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004594 292.0
LYD2_k127_5048682_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 286.0
LYD2_k127_5048682_4 protein conserved in bacteria K09859 - - 0.000000000000000000000000000000000000001141 151.0
LYD2_k127_50567_0 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007912 458.0
LYD2_k127_5084094_0 1,4-alpha-glucan branching enzyme activity K00700,K01236 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18,3.2.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002426 283.0
LYD2_k127_5086792_0 FtsX-like permease family K02004 - - 0.0 1040.0
LYD2_k127_5086792_1 lipoprotein transporter activity K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 334.0
LYD2_k127_5086792_2 lipolytic protein G-D-S-L family K10804 GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016289,GO:0016290,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0047617,GO:0052689,GO:0071704,GO:0140096,GO:1901564 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000001403 268.0
LYD2_k127_5086792_3 cell redox homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000001798 241.0
LYD2_k127_5086792_4 - - - - 0.0000000000000000000000000000000000000000000000000005284 190.0
LYD2_k127_5105570_0 Evidence 4 Homologs of previously reported genes of K18912 - 1.14.99.50 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009057 584.0
LYD2_k127_5105570_1 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 338.0
LYD2_k127_5105570_10 DDE superfamily endonuclease - - - 0.0000000000000002222 79.0
LYD2_k127_5105570_13 spermidine synthase activity - - - 0.00000002245 57.0
LYD2_k127_5105570_16 CGNR zinc finger - - - 0.0007647 44.0
LYD2_k127_5105570_2 cobalamin binding K21089,K21972,K22491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004586 317.0
LYD2_k127_5105570_3 Domain of unknown function (DUF4393) - - - 0.0000000000000000000000000000000000000000000000000000000000000009118 228.0
LYD2_k127_5105570_4 Protein of unknown function (DUF3015) - - - 0.000000000000000000000000000000000000000000000000001027 190.0
LYD2_k127_5105570_5 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000000000000000000000000000000104 166.0
LYD2_k127_5105570_6 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000001222 141.0
LYD2_k127_5105570_7 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000001814 134.0
LYD2_k127_5105570_8 PFAM nuclease (SNase domain protein) - - - 0.000000000000000000000006759 104.0
LYD2_k127_5105570_9 Small metal-binding protein - - - 0.0000000000000000008093 90.0
LYD2_k127_5105701_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 317.0
LYD2_k127_5105701_1 gas vesicle protein - - - 0.000000000000000000001168 97.0
LYD2_k127_5106687_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 467.0
LYD2_k127_5106687_1 Bacterial protein of unknown function (DUF948) - - - 0.000000000000000000000000000000000000000000000000000002958 194.0
LYD2_k127_5106687_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000002318 159.0
LYD2_k127_5106687_3 YtxH-like protein - - - 0.0000000191 60.0
LYD2_k127_5111702_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1445.0
LYD2_k127_5111702_1 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 338.0
LYD2_k127_5111702_2 - - - - 0.00000000000000000000000000000000000000000000000000001043 190.0
LYD2_k127_5111702_3 - - - - 0.000000000000000000000000000000000000000000000002069 175.0
LYD2_k127_5111719_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.0 1154.0
LYD2_k127_5111719_1 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0 1042.0
LYD2_k127_5111719_3 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000002722 103.0
LYD2_k127_5112951_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.105e-253 788.0
LYD2_k127_5112951_1 Zinc-binding dehydrogenase K13979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 379.0
LYD2_k127_5112951_2 nitric oxide dioxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002062 249.0
LYD2_k127_5119710_0 HI0933 family K07007 - - 2.586e-195 616.0
LYD2_k127_5119710_1 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 607.0
LYD2_k127_5119710_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008925 529.0
LYD2_k127_5119710_3 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000001159 168.0
LYD2_k127_5121457_0 xylulokinase activity K00854 - 2.7.1.17 0.0 1049.0
LYD2_k127_5121457_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 556.0
LYD2_k127_5121457_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 509.0
LYD2_k127_5121457_3 Tim44 K15539 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 423.0
LYD2_k127_5121457_4 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 381.0
LYD2_k127_5121457_6 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000007065 164.0
LYD2_k127_5121457_7 - - - - 0.0000000000000000000000000000000008621 136.0
LYD2_k127_5124060_0 Cytochrome b/b6/petB K00412,K03888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 588.0
LYD2_k127_5124060_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00322 - 1.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 468.0
LYD2_k127_5124060_11 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00322 - 1.6.1.1 0.00002448 56.0
LYD2_k127_5124060_12 Protein of unknown function (DUF4239) - - - 0.0000684 53.0
LYD2_k127_5124060_2 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003668 310.0
LYD2_k127_5124060_3 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000003317 261.0
LYD2_k127_5124060_4 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000001122 230.0
LYD2_k127_5124060_5 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.00000000000000000000000000000000000000000000000000000000000008489 218.0
LYD2_k127_5124060_6 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000002546 136.0
LYD2_k127_5124060_8 ATPase family associated with various cellular activities (AAA) K10943 - - 0.00000000000000000000000001492 114.0
LYD2_k127_5124060_9 Histidine kinase K13587 - 2.7.13.3 0.00000000000000000000000001508 113.0
LYD2_k127_5125859_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 2.025e-297 918.0
LYD2_k127_5125859_1 Type III restriction enzyme res subunit - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 7.023e-292 900.0
LYD2_k127_5125859_2 helicase activity K05592 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032270,GO:0032574,GO:0032575,GO:0033554,GO:0033592,GO:0034057,GO:0034248,GO:0034250,GO:0034458,GO:0034459,GO:0034622,GO:0034641,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070035,GO:0070417,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097617,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000112 3.6.4.13 1.902e-254 797.0
LYD2_k127_5125859_3 helicase activity K03579 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007461 354.0
LYD2_k127_5130252_0 nitric oxide dioxygenase activity K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 292.0
LYD2_k127_5130252_1 oxidoreductase activity K00059 - 1.1.1.100 0.00000000000000000000000000001171 119.0
LYD2_k127_5130252_2 - - - - 0.00000000000000000000000003228 116.0
LYD2_k127_5130252_3 Dimerisation domain - - - 0.00000000000000001443 82.0
LYD2_k127_5130252_4 PFAM regulatory protein, TetR K22041 - - 0.00000001269 56.0
LYD2_k127_5130252_6 Dimerisation domain K21377 - 2.1.1.302 0.00001053 49.0
LYD2_k127_5136112_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008963 595.0
LYD2_k127_5136112_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 390.0
LYD2_k127_5147802_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 1.729e-266 823.0
LYD2_k127_5147802_1 Molydopterin dinucleotide binding domain K00302,K10814 - 1.4.99.5,1.5.3.1 2.502e-227 705.0
LYD2_k127_5147802_2 Flagellar Motor Protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 404.0
LYD2_k127_5147802_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008134 336.0
LYD2_k127_5147802_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 291.0
LYD2_k127_5147802_5 DNA replication, synthesis of RNA primer K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.000000000008317 72.0
LYD2_k127_5148290_0 methyltransferase K00570 - 2.1.1.17,2.1.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 319.0
LYD2_k127_5153766_0 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 404.0
LYD2_k127_5153766_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001462 237.0
LYD2_k127_5153766_2 lipid-A-disaccharide synthase activity - - - 0.000000000000000000000000000000000000000005778 156.0
LYD2_k127_5153766_3 peptidyl-tyrosine sulfation - - - 0.00000000000000000000006852 98.0
LYD2_k127_5156583_0 Lysin motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008303 516.0
LYD2_k127_5156583_1 MOFRL family K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007202 463.0
LYD2_k127_5156583_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002673 379.0
LYD2_k127_5156583_3 deaminated base DNA N-glycosylase activity K21929 GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 359.0
LYD2_k127_5169059_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 472.0
LYD2_k127_5169059_1 PFAM Integrase catalytic region K07497 - - 0.000000000000000000000004702 102.0
LYD2_k127_5169925_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 9.418e-227 719.0
LYD2_k127_5169925_1 Glucokinase K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 505.0
LYD2_k127_5169925_2 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 374.0
LYD2_k127_5169925_3 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K00851,K00852,K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.7.1.12,2.7.1.15,5.3.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000089 269.0
LYD2_k127_5169925_4 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000002334 226.0
LYD2_k127_5169925_5 ribonuclease P activity K03536,K08998 GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031123,GO:0031404,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0040007,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.00000000000000002928 86.0
LYD2_k127_5169925_6 Belongs to the bacterial ribosomal protein bL34 family K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000008363 60.0
LYD2_k127_5171071_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 2.535e-259 799.0
LYD2_k127_5171071_1 Pup-ligase protein K13571 - 6.3.1.19 1.473e-240 753.0
LYD2_k127_5171071_10 PFAM YCII-related K09780 - - 0.000000000000000005787 86.0
LYD2_k127_5171071_11 - - - - 0.000000000000005392 77.0
LYD2_k127_5171071_12 Tetratricopeptide repeat - - - 0.00000001476 67.0
LYD2_k127_5171071_13 - - - - 0.00000001733 60.0
LYD2_k127_5171071_15 Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine K18911 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006547,GO:0006548,GO:0006575,GO:0006577,GO:0006578,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009987,GO:0016020,GO:0016053,GO:0016054,GO:0016740,GO:0016741,GO:0019439,GO:0019538,GO:0019752,GO:0032259,GO:0034641,GO:0036211,GO:0042398,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044464,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0052698,GO:0052699,GO:0052701,GO:0052703,GO:0052704,GO:0052707,GO:0052708,GO:0052709,GO:0052803,GO:0052805,GO:0071704,GO:0071944,GO:0097164,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.1.1.44 0.000842 46.0
LYD2_k127_5171071_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 578.0
LYD2_k127_5171071_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 438.0
LYD2_k127_5171071_4 poly(3-hydroxybutyrate) depolymerase activity K07019 GO:0003674,GO:0003824,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0044237,GO:0044238,GO:0044255,GO:0071704 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 429.0
LYD2_k127_5171071_5 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 417.0
LYD2_k127_5171071_6 Proteasome subunit K03432 - 3.4.25.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 336.0
LYD2_k127_5171071_7 Proteasome subunit K03433 - 3.4.25.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 317.0
LYD2_k127_5171071_8 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000001229 175.0
LYD2_k127_5176281_0 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000003963 232.0
LYD2_k127_5176358_0 Type II/IV secretion system protein K02454,K02652 - - 6.149e-239 755.0
LYD2_k127_5176358_1 Pilus assembly protein PilX K07140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 406.0
LYD2_k127_5176358_2 pilus assembly protein PilW K02672 - - 0.00000000000000000000000000000000000000002723 162.0
LYD2_k127_5176358_3 Putative Competence protein ComGF K02246,K02248 - - 0.000000000000000000000000924 106.0
LYD2_k127_5176358_4 Type IV pilin PilA - - - 0.00001378 50.0
LYD2_k127_5182324_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.472e-301 938.0
LYD2_k127_5182324_1 anaerobic respiration K10535 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015975,GO:0015980,GO:0016491,GO:0016661,GO:0016663,GO:0019329,GO:0019331,GO:0034641,GO:0042597,GO:0044237,GO:0044281,GO:0044464,GO:0045333,GO:0047991,GO:0055114 1.7.2.6 1.313e-266 831.0
LYD2_k127_5182324_10 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000000000000004104 202.0
LYD2_k127_5182324_11 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000004363 205.0
LYD2_k127_5182324_12 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000001067 162.0
LYD2_k127_5182324_13 Cytochrome c-type biogenesis protein K02200 - - 0.0000000000000000000000000000004129 128.0
LYD2_k127_5182324_14 cytochrome complex assembly K02200 - - 0.0000000000001362 84.0
LYD2_k127_5182324_15 Heme exporter protein D (CcmD) K02196 - - 0.0000001807 55.0
LYD2_k127_5182324_2 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 400.0
LYD2_k127_5182324_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 362.0
LYD2_k127_5182324_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 339.0
LYD2_k127_5182324_5 to Cytochrome c-554 precursor (C554) (Hydroxylamine oxidoreductase-linked cytochrome) pir A59036 cytochrome c554, tetraheme, precursor - Nitrosomonas europaea - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005808 323.0
LYD2_k127_5182324_6 Cytochrome c-type biogenesis protein K02200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001263 298.0
LYD2_k127_5182324_7 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003339 279.0
LYD2_k127_5182324_8 PFAM NapC NirT cytochrome c K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003544 274.0
LYD2_k127_5182324_9 oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005708 264.0
LYD2_k127_51888_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009551 426.0
LYD2_k127_51888_1 Sterile alpha motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 282.0
LYD2_k127_51888_10 Belongs to the 'phage' integrase family - - - 0.00000002291 60.0
LYD2_k127_51888_11 hmm pf02371 K07486 - - 0.0000136 50.0
LYD2_k127_51888_12 Belongs to the 'phage' integrase family - - - 0.00003641 51.0
LYD2_k127_51888_13 - - - - 0.0001228 47.0
LYD2_k127_51888_2 PFAM Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003102 300.0
LYD2_k127_51888_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000001511 194.0
LYD2_k127_51888_4 PFAM response regulator receiver - - - 0.000000000000000000000000003736 115.0
LYD2_k127_51888_5 phosphorelay signal transduction system - - - 0.0000000000000000000004617 100.0
LYD2_k127_51888_6 response regulator, receiver - - - 0.00000000000000000000447 97.0
LYD2_k127_51888_7 PFAM IS1 transposase - - - 0.0000000000003409 76.0
LYD2_k127_51888_8 Belongs to the 'phage' integrase family - - - 0.000000000002818 69.0
LYD2_k127_5190393_0 hydrogen-translocating pyrophosphatase activity K15987 - 3.6.1.1 2.161e-301 928.0
LYD2_k127_5190393_1 DHH family K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004348 306.0
LYD2_k127_5195915_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008359 296.0
LYD2_k127_5195915_1 - - - - 0.0000000000000000000000000000000000000000000000000000000001126 205.0
LYD2_k127_5195915_2 Evidence 2b Function of strongly homologous gene K02584,K12266,K15836,K21009 - - 0.00000000000005077 73.0
LYD2_k127_5195915_3 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00003,K00982,K00990,K06950,K15371 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 0.0000004463 52.0
LYD2_k127_5196642_0 NHL repeat - - - 4.206e-240 745.0
LYD2_k127_5196642_1 radical SAM domain protein - - - 1.128e-231 719.0
LYD2_k127_5196642_12 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000000005842 113.0
LYD2_k127_5196642_13 Domain of unknown function (DUF4160) - - - 0.0000000000000000003157 87.0
LYD2_k127_5196642_14 Protein of unknown function (DUF2442) - - - 0.0000000003885 64.0
LYD2_k127_5196642_2 denitrification pathway - - - 1.9e-215 675.0
LYD2_k127_5196642_3 EcoEI R protein C-terminal K01153 - 3.1.21.3 3.408e-207 656.0
LYD2_k127_5196642_4 denitrification pathway - - - 2.394e-206 648.0
LYD2_k127_5196642_6 chaperone-mediated protein complex assembly K00373,K17052 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016530,GO:0022607,GO:0034622,GO:0042126,GO:0042128,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044464,GO:0051131,GO:0065003,GO:0071704,GO:0071840,GO:0071941,GO:0140104,GO:2001057 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 457.0
LYD2_k127_5196642_7 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009591 444.0
LYD2_k127_5196642_8 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 379.0
LYD2_k127_5196642_9 phosphatidylcholine synthase activity K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 337.0
LYD2_k127_5203397_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0 1242.0
LYD2_k127_5203397_1 myo-inosose-2 dehydratase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 437.0
LYD2_k127_5203397_2 3-dehydroquinate synthase K01735,K19969 - 4.2.3.152,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 414.0
LYD2_k127_5203397_3 UbiA prenyltransferase family - - - 0.0000009819 52.0
LYD2_k127_5211928_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07323 - - 0.0000000000000000000000000000000000000000000000000000000000000000324 231.0
LYD2_k127_5211928_1 Dodecin K09165 - - 0.00000000000000000000569 94.0
LYD2_k127_5211928_2 Hydrolase - - - 0.00000000000306 72.0
LYD2_k127_5230830_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 8.14e-283 876.0
LYD2_k127_5230830_1 ACT domain K00928 - 2.7.2.4 2.147e-209 657.0
LYD2_k127_5230830_2 Metalloenzyme superfamily K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005593 484.0
LYD2_k127_5230830_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 376.0
LYD2_k127_5230830_4 FtsZ-dependent cytokinesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007857 331.0
LYD2_k127_5230830_5 DALR_2 K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000007365 204.0
LYD2_k127_5230830_6 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000000000004092 183.0
LYD2_k127_5230830_7 bacterial (prokaryotic) histone like domain K04764 - - 0.0000000000000000000000000000000000000000000001078 169.0
LYD2_k127_5230830_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.0003314 43.0
LYD2_k127_5233574_0 - - - - 0.000000000000000000000000000000000000000000000000000000007041 204.0
LYD2_k127_5233574_1 alcohol dehydrogenase K00001,K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000001063 188.0
LYD2_k127_5233574_2 phosphorelay signal transduction system K02481,K07714 - - 0.0000000000000000000000000000000000001081 143.0
LYD2_k127_5233574_3 - - - - 0.0000000000000000000000000000004004 132.0
LYD2_k127_5233574_4 CopG antitoxin of type II toxin-antitoxin system - - - 0.0000000000000000000000000006088 115.0
LYD2_k127_5233574_5 PFAM Uncharacterised protein family UPF0150 - - - 0.000000000000000000001341 97.0
LYD2_k127_5233574_6 mRNA binding K07339 - - 0.000000000000000000001377 96.0
LYD2_k127_5241919_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 6.213e-202 634.0
LYD2_k127_5241919_1 - - - - 0.000000000000000000000006197 108.0
LYD2_k127_5241919_2 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00382 - 1.8.1.4 0.000000000000000003174 85.0
LYD2_k127_5241919_3 photosystem II stabilization K00703,K02237,K02238 - 2.4.1.21 0.00000000000000002503 88.0
LYD2_k127_5266817_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 7.22e-247 777.0
LYD2_k127_5275242_0 polyphosphate kinase activity K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008263 564.0
LYD2_k127_5275242_1 Belongs to the citrate synthase family K01647,K01659 GO:0003674,GO:0003824,GO:0004108,GO:0006082,GO:0006091,GO:0006113,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016740,GO:0016746,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0036440,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0046459,GO:0046912,GO:0050440,GO:0055114,GO:0071704 2.3.3.1,2.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 519.0
LYD2_k127_5275242_2 2-methylcitrate dehydratase activity K01720 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009268,GO:0009628,GO:0009987,GO:0010447,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019679,GO:0019752,GO:0030312,GO:0032787,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046459,GO:0047547,GO:0050896,GO:0071704,GO:0071944,GO:0072329,GO:1901575 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009263 413.0
LYD2_k127_5275242_3 methylisocitrate lyase activity K03417 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006113,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015980,GO:0016042,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0032787,GO:0042737,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0046421,GO:0046459,GO:0046872,GO:0055114,GO:0071704,GO:0072329,GO:1901575 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 360.0
LYD2_k127_5275242_4 Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE K06039,K07235 - - 0.000000000000000000000000000000000000000000000000000000000000000002859 226.0
LYD2_k127_5276014_0 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 580.0
LYD2_k127_5276014_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 550.0
LYD2_k127_5276014_2 arginine decarboxylase activity K02626 - 4.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 349.0
LYD2_k127_5276014_3 Belongs to the pseudouridine synthase RsuA family K06178,K06181,K06182 - 5.4.99.20,5.4.99.21,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 344.0
LYD2_k127_5276014_4 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008536 305.0
LYD2_k127_5278181_0 helicase activity K03579 - 3.6.4.13 3.638e-259 812.0
LYD2_k127_5278181_1 - - - - 0.0000000000000000000000000000000000001917 149.0
LYD2_k127_5278181_4 Domain of unknown function (DUF3817) - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00000000000000000000009719 100.0
LYD2_k127_5278181_5 - - - - 0.00000000000000000002221 101.0
LYD2_k127_5280410_0 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005747 469.0
LYD2_k127_5280410_1 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 422.0
LYD2_k127_5280410_2 tRNA 3'-trailer cleavage - - - 0.000009793 48.0
LYD2_k127_5291428_0 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 413.0
LYD2_k127_529275_0 ATP citrate lyase citrate-binding K15231 - 2.3.3.8 3.035e-233 725.0
LYD2_k127_529275_1 Belongs to the citrate synthase family K01902,K15230,K15233 - 2.3.3.8,6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 286.0
LYD2_k127_5295214_0 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 448.0
LYD2_k127_5295214_1 RF-1 domain K15034 - - 0.0000000000000000000000000000000000000000000000002649 179.0
LYD2_k127_5295214_2 peptidyl-tyrosine sulfation - - - 0.00000000000003847 73.0
LYD2_k127_5322407_0 Chorismate mutase type II K14170 - 4.2.1.51,5.4.99.5 7.46e-198 621.0
LYD2_k127_5322407_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 556.0
LYD2_k127_5322407_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 494.0
LYD2_k127_5328065_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 2.949e-214 670.0
LYD2_k127_5328065_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006508 449.0
LYD2_k127_5328065_10 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.00000000000000003129 91.0
LYD2_k127_5328065_11 - - - - 0.00000000000000004168 86.0
LYD2_k127_5328065_12 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.000000000000006665 83.0
LYD2_k127_5328065_2 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 436.0
LYD2_k127_5328065_3 Psort location Extracellular, score K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008282 291.0
LYD2_k127_5328065_4 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000005713 230.0
LYD2_k127_5328065_5 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000003053 164.0
LYD2_k127_5328065_6 - - - - 0.00000000000000000000000008114 111.0
LYD2_k127_5328065_7 - - - - 0.00000000000000000000001348 112.0
LYD2_k127_5328065_8 - - - - 0.0000000000000000000001166 102.0
LYD2_k127_5328065_9 Transcriptional regulator - - - 0.000000000000000000009167 95.0
LYD2_k127_5329621_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.271e-233 726.0
LYD2_k127_5329621_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.141e-222 706.0
LYD2_k127_5329621_2 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 4.782e-211 658.0
LYD2_k127_5329621_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 406.0
LYD2_k127_5329621_4 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000009154 162.0
LYD2_k127_5329621_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000008075 106.0
LYD2_k127_5329927_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 354.0
LYD2_k127_5329927_1 - - - - 0.000000000000000000000000000000000000000000000000008827 187.0
LYD2_k127_5343324_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005809 249.0
LYD2_k127_5343897_0 cellulase activity K01178,K14645,K18546 - 3.2.1.3 5.54e-229 733.0
LYD2_k127_5343897_1 Peptidoglycan-binding LysM - - - 0.00000858 54.0
LYD2_k127_5343897_2 cellulase activity K01178,K14645,K18546 - 3.2.1.3 0.00001288 48.0
LYD2_k127_5345882_0 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299,K03281 - 3.4.17.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 519.0
LYD2_k127_5345882_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 299.0
LYD2_k127_5345882_3 spore germination - - - 0.000000000000000000000000000000002421 133.0
LYD2_k127_5352201_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.174e-240 754.0
LYD2_k127_5352201_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 558.0
LYD2_k127_5352201_2 Pyruvate ferredoxin oxidoreductase K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003613 491.0
LYD2_k127_5352201_3 2-oxoacid acceptor oxidoreductase, gamma subunit, pyruvate 2-ketoisovalerate K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000001309 232.0
LYD2_k127_5352201_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K12263 - - 0.0000000000000000001685 96.0
LYD2_k127_5372067_0 FES K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 402.0
LYD2_k127_5372067_1 DNA replication proofreading K02336,K06877,K07501 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 382.0
LYD2_k127_5372067_2 nUDIX hydrolase K03574,K03575 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000009276 207.0
LYD2_k127_5375350_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000001307 207.0
LYD2_k127_5375350_2 Sulfurtransferase TusA - - - 0.00000000000000000000000009683 113.0
LYD2_k127_5375350_3 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000000000000000000463 100.0
LYD2_k127_5375350_4 Cytochrome C assembly protein - - - 0.00005159 46.0
LYD2_k127_5376058_0 ABC transporter, substrate-binding protein, aliphatic sulfonates family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006923 409.0
LYD2_k127_5376058_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 380.0
LYD2_k127_5376058_2 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 371.0
LYD2_k127_5382163_0 With GlrK is part of a two-component signal transduction system regulating glmY K07715 - - 0.00000000000000000003149 97.0
LYD2_k127_5382163_1 response regulator - - - 0.00000000000001291 80.0
LYD2_k127_5394969_0 Dehydratase family K01687 - 4.2.1.9 4.145e-316 972.0
LYD2_k127_5394969_1 PP-loop family K21947 - 2.8.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 500.0
LYD2_k127_5394969_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 439.0
LYD2_k127_5394969_3 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000000000000000000000000000009397 190.0
LYD2_k127_5394969_4 Lipid A 3-O-deacylase (PagL) - - - 0.0000000001214 72.0
LYD2_k127_5406269_0 FAD binding domain K00278 - 1.4.3.16 9.653e-211 660.0
LYD2_k127_5417170_0 Beta-Casp domain K07576 - - 8.082e-240 747.0
LYD2_k127_5417170_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 409.0
LYD2_k127_5417170_10 - - - - 0.00000000000006544 74.0
LYD2_k127_5417170_2 aminopeptidase activity K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 405.0
LYD2_k127_5417170_3 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000000000000000000000000000000001203 241.0
LYD2_k127_5417170_6 acetyltransferase - - - 0.000000000000000000000000000000000000000000000008428 176.0
LYD2_k127_5417170_8 tetraacyldisaccharide 4'-kinase activity K09791 - - 0.00000000000000000000000000000000223 131.0
LYD2_k127_5420903_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000001162 226.0
LYD2_k127_5420903_1 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.00000000000000000000000000000000000000000000000001118 182.0
LYD2_k127_5420903_2 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.000000000000000000000000000003549 122.0
LYD2_k127_5422560_0 Probable molybdopterin binding domain K03750 - 2.10.1.1 7.824e-232 722.0
LYD2_k127_5422560_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - 6.372e-196 612.0
LYD2_k127_5422560_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 474.0
LYD2_k127_5422560_3 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009571 335.0
LYD2_k127_5422560_4 Mo-molybdopterin cofactor metabolic process K03750,K03753,K13818 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 2.10.1.1,2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000000000005776 241.0
LYD2_k127_5422560_5 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000005045 171.0
LYD2_k127_542569_0 Anti-sigma-K factor rskA K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 317.0
LYD2_k127_542569_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003263 250.0
LYD2_k127_542569_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000000000000000000007807 205.0
LYD2_k127_542569_3 lysine biosynthetic process via aminoadipic acid K00997,K06133 - 2.7.8.7 0.00000000000000000000000000000000000002766 153.0
LYD2_k127_542569_4 PFAM Radical SAM domain protein K22226 - - 0.00000000000000000000000000000134 136.0
LYD2_k127_542569_5 ATPase-coupled phosphate ion transmembrane transporter activity - - - 0.0000000000000000000000001389 118.0
LYD2_k127_542569_6 Ankyrin repeats (many copies) K06867,K21440 - - 0.00000000000000000146 93.0
LYD2_k127_542569_7 Uncharacterised nucleotidyltransferase - - - 0.00000003014 65.0
LYD2_k127_542569_9 Peptidase S24-like K13280 - 3.4.21.89 0.0000164 55.0
LYD2_k127_5444435_0 B12 binding domain - - - 1.213e-320 985.0
LYD2_k127_5444435_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 6.155e-199 622.0
LYD2_k127_5444435_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 537.0
LYD2_k127_5444435_3 heme binding K00463 - 1.13.11.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 346.0
LYD2_k127_5444435_4 Transcriptional regulator, Crp Fnr family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001065 261.0
LYD2_k127_5445564_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0 1360.0
LYD2_k127_5445564_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 2.369e-247 766.0
LYD2_k127_5445564_11 ThiS family K03636 - - 0.00000000000000000000000000000000000000001561 154.0
LYD2_k127_5445564_12 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000000000000001296 136.0
LYD2_k127_5445564_13 NIL - - - 0.00000000000000000000000000000000001366 136.0
LYD2_k127_5445564_15 thiamine diphosphate biosynthetic process K03154 - - 0.0000000000000000000000001296 108.0
LYD2_k127_5445564_17 PLD-like domain - - - 0.0001527 46.0
LYD2_k127_5445564_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 583.0
LYD2_k127_5445564_3 Pyridoxal-phosphate dependent enzyme K01738,K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 548.0
LYD2_k127_5445564_4 Predicted permease YjgP/YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 494.0
LYD2_k127_5445564_5 ThiF family K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 472.0
LYD2_k127_5445564_6 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 457.0
LYD2_k127_5445564_7 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 444.0
LYD2_k127_5445564_8 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005941 424.0
LYD2_k127_5445564_9 JAB/MPN domain K21140 - 3.13.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006259 268.0
LYD2_k127_5476921_0 Conserved region in glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2724.0
LYD2_k127_5476921_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 6.942e-295 906.0
LYD2_k127_5476921_2 Polyprenyl synthetase K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 286.0
LYD2_k127_5476921_3 - - - - 0.0000000000005623 77.0
LYD2_k127_55074_0 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K07442 - 2.1.1.219,2.1.1.220 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003512 407.0
LYD2_k127_55074_1 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006602 369.0
LYD2_k127_5540914_0 COG3385 FOG Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 562.0
LYD2_k127_5540914_1 IMP dehydrogenase activity K07182 - - 0.000000000000000004429 89.0
LYD2_k127_5540914_2 intermembrane phospholipid transfer K07323 - - 0.0000000002361 63.0
LYD2_k127_5542636_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 586.0
LYD2_k127_5542636_1 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008964 563.0
LYD2_k127_5542636_2 mannose-ethanolamine phosphotransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 458.0
LYD2_k127_5542636_3 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 297.0
LYD2_k127_5547362_0 - - - - 0.000000000000000000000000000000000000000000000002431 181.0
LYD2_k127_5547362_1 transposition K07497 - - 0.000000000000000000000000000000004329 134.0
LYD2_k127_5547362_2 Helix-turn-helix domain - - - 0.0009645 43.0
LYD2_k127_5547590_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.0 1069.0
LYD2_k127_5547590_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 9.345e-203 635.0
LYD2_k127_5547590_2 ACT domain K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 299.0
LYD2_k127_5547590_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000002129 137.0
LYD2_k127_5565055_0 Phosphoglycerate kinase K00927 - 2.7.2.3 9.588e-220 687.0
LYD2_k127_5565055_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 567.0
LYD2_k127_5565055_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005288 292.0
LYD2_k127_5565055_3 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000000000002056 138.0
LYD2_k127_5565218_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 2.288e-196 618.0
LYD2_k127_5565218_1 alcohol dehydrogenase K00060,K07777 - 1.1.1.103,2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 603.0
LYD2_k127_5565218_2 Lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 359.0
LYD2_k127_5565218_3 thiolester hydrolase activity K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 289.0
LYD2_k127_5568312_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 2.379e-235 736.0
LYD2_k127_5568312_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 522.0
LYD2_k127_5568312_2 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 511.0
LYD2_k127_5568312_3 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 465.0
LYD2_k127_5568312_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 426.0
LYD2_k127_5568312_5 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006296 292.0
LYD2_k127_5568312_7 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000002265 236.0
LYD2_k127_5568312_8 tyrosine recombinase XerC K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000000002617 217.0
LYD2_k127_5577122_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 7.245e-215 684.0
LYD2_k127_5577122_1 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 321.0
LYD2_k127_5577122_2 molybdenum ion binding K07140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005649 243.0
LYD2_k127_5577122_3 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001627 243.0
LYD2_k127_5577122_4 transposase IS116 IS110 IS902 family K07486 - - 0.000000001681 59.0
LYD2_k127_5577122_5 gag-polyprotein putative aspartyl protease K06985 - - 0.00000006263 54.0
LYD2_k127_5587838_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00382 - 1.8.1.4 4.72e-227 707.0
LYD2_k127_5587838_1 Protein of unknown function (DUF3047) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003791 349.0
LYD2_k127_5587838_2 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008998 335.0
LYD2_k127_5587838_3 Sugar (and other) transporter K08178 - - 0.000000000000000000000000000000000000000000000000000001233 192.0
LYD2_k127_5587838_4 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000002587 184.0
LYD2_k127_5587838_5 radical SAM domain protein K06871 - - 0.000000000000000000000000000000000002123 150.0
LYD2_k127_5587838_7 - - - - 0.000000000000000000000000000000009565 130.0
LYD2_k127_5587838_8 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000001203 115.0
LYD2_k127_5587838_9 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000004086 107.0
LYD2_k127_563395_0 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 460.0
LYD2_k127_563395_1 toxin-antitoxin pair type II binding K08591,K19159 GO:0003674,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0040008,GO:0045927,GO:0048518,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097351,GO:1903506,GO:2000112,GO:2001141 2.3.1.15 0.0000000000000000000000000000000000000000007066 158.0
LYD2_k127_563395_2 nuclease activity K06218 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0006139,GO:0006355,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0034655,GO:0040008,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000222 139.0
LYD2_k127_563395_3 GMC oxidoreductase - - - 0.0000000000000000000000000000000003638 137.0
LYD2_k127_563395_6 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000001608 96.0
LYD2_k127_5636196_0 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 568.0
LYD2_k127_5636196_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 411.0
LYD2_k127_5636196_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 318.0
LYD2_k127_5636196_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000008512 139.0
LYD2_k127_5636196_4 Glycosyltransferase like family 2 - - - 0.00000000000000007891 79.0
LYD2_k127_5636196_5 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00001791 49.0
LYD2_k127_56419_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1057.0
LYD2_k127_56419_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 2.383e-263 816.0
LYD2_k127_56419_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005675 313.0
LYD2_k127_56419_3 Protein of unknown function DUF86 - - - 0.0000000000000000000000000000116 122.0
LYD2_k127_56419_5 nucleotidyltransferase activity K07075 - - 0.000000000000000001529 89.0
LYD2_k127_5662162_0 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005365 293.0
LYD2_k127_5662162_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003584 280.0
LYD2_k127_5662162_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000001964 206.0
LYD2_k127_5662162_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0006046 45.0
LYD2_k127_5676850_0 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 550.0
LYD2_k127_5676850_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000003966 144.0
LYD2_k127_5676850_2 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000001757 141.0
LYD2_k127_5679918_0 AcrB/AcrD/AcrF family - - - 3.25e-304 940.0
LYD2_k127_5679918_1 Protein of unknown function (DUF2914) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008044 502.0
LYD2_k127_5679918_3 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K00797,K01611 - 2.5.1.16,4.1.1.50 0.000000000000000000000000000000000000000000000000000007405 194.0
LYD2_k127_5679918_4 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000006435 174.0
LYD2_k127_5679918_5 Sterol carrier protein - - - 0.00000000000000000000000000000000000000005535 153.0
LYD2_k127_5679918_7 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.00000000000001473 82.0
LYD2_k127_5688520_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003401 501.0
LYD2_k127_5688520_1 Mur ligase middle domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 490.0
LYD2_k127_5688520_10 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003991 264.0
LYD2_k127_5688520_11 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001821 253.0
LYD2_k127_5688520_12 MoaE protein K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000002284 251.0
LYD2_k127_5688520_13 Mo-molybdopterin cofactor metabolic process K03636 - - 0.00000000000000000000000000000002437 135.0
LYD2_k127_5688520_14 - - - - 0.000000000000000000000686 103.0
LYD2_k127_5688520_15 PFAM YcfA-like protein - - - 0.0000000000000000000007101 95.0
LYD2_k127_5688520_16 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000000000000004362 93.0
LYD2_k127_5688520_17 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000001803 58.0
LYD2_k127_5688520_2 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 476.0
LYD2_k127_5688520_3 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 466.0
LYD2_k127_5688520_4 PHP domain protein K01624,K07053 - 3.1.3.97,4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 419.0
LYD2_k127_5688520_5 tRNA (guanine(37)-N(1))-methyltransferase activity K01091,K01633,K15429 - 1.13.11.81,2.1.1.228,3.1.3.18,4.1.2.25,5.1.99.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005412 376.0
LYD2_k127_5688520_6 Dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 321.0
LYD2_k127_5688520_7 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 288.0
LYD2_k127_5688520_8 protein serine/threonine phosphatase activity K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002421 278.0
LYD2_k127_5688520_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001251 267.0
LYD2_k127_5701822_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004316 378.0
LYD2_k127_5701822_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 346.0
LYD2_k127_5722997_1 phosphate ion binding K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 334.0
LYD2_k127_5722997_11 General secretion pathway protein I K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00001273 54.0
LYD2_k127_5722997_12 Type II secretion system (T2SS), protein J K02459 - - 0.0007534 50.0
LYD2_k127_5722997_2 General secretion pathway protein F K02455,K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 291.0
LYD2_k127_5722997_4 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000001963 182.0
LYD2_k127_5722997_5 PFAM General secretion pathway protein K K02460 - - 0.0000000000000000000000000000000000004367 152.0
LYD2_k127_5722997_6 identical protein binding K07285 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0016020,GO:0019867,GO:0042802 - 0.00000000000000000000000000000000002534 141.0
LYD2_k127_5722997_7 Type IV pilus assembly protein PilM; K02461 - - 0.0000000000000000000009983 110.0
LYD2_k127_5722997_9 general secretion pathway protein K02246,K02247,K02456,K02457,K02458,K10924 - - 0.0000000000001412 80.0
LYD2_k127_5723023_0 AMP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005044 268.0
LYD2_k127_5723023_2 IMP dehydrogenase activity K07182 - - 0.00000000000000000000000000000000002687 137.0
LYD2_k127_5723023_3 IMP dehydrogenase activity K07182 - - 0.0000000000000000000000000000001629 128.0
LYD2_k127_5732695_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005228 418.0
LYD2_k127_5732695_1 DivIVA protein K04074 - - 0.0000000000000000000000000000000000000000000000000000000003429 206.0
LYD2_k127_5732695_3 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000001083 134.0
LYD2_k127_5732695_4 YGGT family K02221 - - 0.00000000000000000000000000002065 120.0
LYD2_k127_573915_0 Putative collagen-binding domain of a collagenase - - - 0.00000000000000000000000000000000000000000002277 179.0
LYD2_k127_573915_2 Staphylococcal nuclease homologue K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0009594 44.0
LYD2_k127_5740808_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0 1011.0
LYD2_k127_5740808_1 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit B K10945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 514.0
LYD2_k127_5740808_2 Multicopper oxidase K00368 - 1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006573 336.0
LYD2_k127_5740808_3 Ammonia monooxygenase K10944 - 1.14.18.3,1.14.99.39 0.0000000000000000000000000000000000000000000000001201 182.0
LYD2_k127_5740808_4 Cytochrome c - - - 0.000000000000000000000000000000000000000000000003448 177.0
LYD2_k127_5740808_5 Homeodomain-like domain K18996 - - 0.0000000000002092 72.0
LYD2_k127_5743966_0 Squalene/phytoene synthase K00801 - 2.5.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006276 355.0
LYD2_k127_5743966_1 ribonucleoside-diphosphate reductase activity K07735 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000009442 136.0
LYD2_k127_5743966_2 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000006783 58.0
LYD2_k127_5760604_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 7.323e-225 702.0
LYD2_k127_5760604_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 4.87e-201 633.0
LYD2_k127_5760604_10 Diguanylate cyclase, GGDEF domain - - - 0.0000002052 55.0
LYD2_k127_5760604_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 484.0
LYD2_k127_5760604_3 Imidazoleglycerol-phosphate dehydratase K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 375.0
LYD2_k127_5760604_4 Protein of unknown function (DUF4238) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 332.0
LYD2_k127_5760604_5 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 300.0
LYD2_k127_5760604_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000001696 255.0
LYD2_k127_5760604_7 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000001502 224.0
LYD2_k127_5760604_8 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000005013 184.0
LYD2_k127_5760604_9 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000000007325 130.0
LYD2_k127_5761860_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 518.0
LYD2_k127_5761860_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002456 443.0
LYD2_k127_5761860_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 303.0
LYD2_k127_5761860_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000001244 191.0
LYD2_k127_5761860_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000002115 134.0
LYD2_k127_5770995_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 2.443e-219 691.0
LYD2_k127_5770995_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 467.0
LYD2_k127_5770995_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 349.0
LYD2_k127_5770995_3 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008147 294.0
LYD2_k127_5770995_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K06142 - - 0.000000000000000000000000000000000000000000000000000000000000000000001103 241.0
LYD2_k127_5770995_5 Rhodanese-like domain - - - 0.00000000000000000000000000000000000000000000000003401 180.0
LYD2_k127_5773009_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1245.0
LYD2_k127_5773009_1 Aconitase C-terminal domain K01681 - 4.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 453.0
LYD2_k127_5775419_0 catechol 2,3-dioxygenase activity K07104 - 1.13.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002783 270.0
LYD2_k127_5775419_1 Bacterial-like globin K06886 - - 0.0000000000000000000000000000000000000000000000003141 178.0
LYD2_k127_5775419_2 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000000000000008154 172.0
LYD2_k127_5775419_3 Iron-binding zinc finger CDGSH type - - - 0.00000000000000000000000000000000000011 142.0
LYD2_k127_5775419_4 - - - - 0.0000000000000000000000000000000103 128.0
LYD2_k127_5775419_5 - - - - 0.00000000000000000000000000000001968 129.0
LYD2_k127_5775419_6 transcription factor binding K02584,K12146,K12266,K15836,K21009 GO:0000976,GO:0000984,GO:0001017,GO:0001067,GO:0001150,GO:0001158,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0035326,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001141 - 0.000000000000000000000000000005205 123.0
LYD2_k127_5775419_7 - - - - 0.000000000000000000001838 102.0
LYD2_k127_5779569_0 Histidine kinase K07636 - 2.7.13.3 3.6e-212 700.0
LYD2_k127_5779569_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006829 515.0
LYD2_k127_5779569_2 response regulator, receiver K03413,K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 306.0
LYD2_k127_5779569_3 Yqey-like protein K09117 - - 0.000000000000000000000008444 102.0
LYD2_k127_5779569_4 Histidine kinase - - - 0.0000000000000000000006154 98.0
LYD2_k127_5790076_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00322,K00382 - 1.6.1.1,1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 600.0
LYD2_k127_5790076_1 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 339.0
LYD2_k127_5790076_3 Phage integrase, N-terminal SAM-like domain - - - 0.00000000000000000000274 94.0
LYD2_k127_5795680_0 Sterile alpha motif. - - - 1.994e-226 709.0
LYD2_k127_5795680_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001152 279.0
LYD2_k127_5795680_2 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00000000000000000000000000000000000000000000000273 181.0
LYD2_k127_5795680_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.000000000000000005509 84.0
LYD2_k127_5795680_5 Staphylococcal nuclease homologues K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0000000001372 68.0
LYD2_k127_5795680_7 Phage integrase family - - - 0.0007299 50.0
LYD2_k127_5805897_0 Sterile alpha motif. - - - 0.0 1475.0
LYD2_k127_5805897_1 Domain of unknown function (DUF1929) - - - 4.731e-244 780.0
LYD2_k127_5805897_2 Animal haem peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 544.0
LYD2_k127_5805897_3 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009412 374.0
LYD2_k127_5805897_4 - - - - 0.0000000000000000000000000000000000000000000000005475 183.0
LYD2_k127_5805897_5 Transposase IS116 IS110 IS902 family protein K07486 - - 0.000000000000000000001048 98.0
LYD2_k127_5805897_6 - - - - 0.00000000000000003631 88.0
LYD2_k127_5809449_0 The glycine cleavage system catalyzes the degradation of glycine K00605,K06980,K22086 - 1.5.99.5,2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005385 557.0
LYD2_k127_5809449_1 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 286.0
LYD2_k127_5809449_10 - - - - 0.0000000006251 62.0
LYD2_k127_5809449_2 glycerophosphoryl diester phosphodiesterase K01113,K01126 - 3.1.3.1,3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000926 293.0
LYD2_k127_5809449_4 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001659 268.0
LYD2_k127_5809449_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000007426 224.0
LYD2_k127_5809449_6 GGDEF domain - - - 0.0000000000000000000000000000000000000000002736 161.0
LYD2_k127_5809449_7 - - - - 0.000000000000000000000000000000000005383 141.0
LYD2_k127_5809449_9 - - - - 0.000000000000000000000004757 115.0
LYD2_k127_5809920_0 Uncharacterized protein conserved in bacteria (DUF2309) K09822 - - 0.0 1473.0
LYD2_k127_5809920_1 Uncharacterized ACR, YdiU/UPF0061 family K08997 - - 9.687e-243 759.0
LYD2_k127_5809920_2 NADH-quinone oxidoreductase K00341,K05577 - 1.6.5.3 7.002e-233 734.0
LYD2_k127_5809920_3 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 414.0
LYD2_k127_5809920_4 NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000728 320.0
LYD2_k127_5809920_5 Evidence 2b Function of strongly homologous gene - - - 0.000000000000000000000000000000000000000000000000000000001146 201.0
LYD2_k127_5809920_6 Uncharacterized conserved protein (DUF2294) - - - 0.0000000000000000000000000000000000000000000000005185 177.0
LYD2_k127_5815138_0 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 576.0
LYD2_k127_5815138_1 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.0000001181 54.0
LYD2_k127_5815916_0 proline dipeptidase activity K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 557.0
LYD2_k127_5815916_1 protein secretion K03116 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 304.0
LYD2_k127_5815916_2 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000101 262.0
LYD2_k127_5815916_3 PilZ domain K02676 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006875 259.0
LYD2_k127_5815916_4 PilZ domain K02676 - - 0.00000000000000000000000000000000000000000000000000000000000000002468 228.0
LYD2_k127_5815916_7 PBS lyase HEAT-like repeat - - - 0.00000000000000001855 92.0
LYD2_k127_5836988_0 Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine K13571 GO:0000166,GO:0000302,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010035,GO:0010498,GO:0016020,GO:0016740,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030312,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034614,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044464,GO:0050896,GO:0051409,GO:0051603,GO:0051704,GO:0051716,GO:0070490,GO:0070647,GO:0070887,GO:0071241,GO:0071704,GO:0071731,GO:0071732,GO:0071944,GO:0097159,GO:0097366,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170 6.3.1.19 1.185e-283 874.0
LYD2_k127_5836988_1 O-methyltransferase activity K13571,K20814 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006464,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0016810,GO:0016811,GO:0017076,GO:0018193,GO:0018205,GO:0019538,GO:0019941,GO:0030163,GO:0030554,GO:0032446,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0070490,GO:0070647,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 3.5.1.119,6.3.1.19 1.388e-258 803.0
LYD2_k127_5836988_2 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007475 456.0
LYD2_k127_5836988_3 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 427.0
LYD2_k127_5836988_4 Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine K03433 GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0004298,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005839,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009405,GO:0009987,GO:0010498,GO:0016020,GO:0016787,GO:0019538,GO:0019774,GO:0019899,GO:0019941,GO:0030163,GO:0032991,GO:0035375,GO:0040007,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044419,GO:0044424,GO:0044464,GO:0051603,GO:0051704,GO:0070003,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 3.4.25.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008476 413.0
LYD2_k127_5836988_5 Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine K03432 - 3.4.25.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008357 336.0
LYD2_k127_5843207_0 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 455.0
LYD2_k127_5843207_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 429.0
LYD2_k127_5843207_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000004908 184.0
LYD2_k127_5843207_3 hmm pf02371 K07486 - - 0.000000000000000000000000000001001 121.0
LYD2_k127_5843207_4 Cupin - - - 0.000000000000001526 83.0
LYD2_k127_5843207_5 Transposase (IS116 IS110 IS902 family) K07486 - - 0.0000000000003344 72.0
LYD2_k127_5843207_6 methyltransferase - - - 0.00000027 51.0
LYD2_k127_5863861_0 - K01992 - - 2.351e-232 730.0
LYD2_k127_5863861_2 ATPase activity K01990,K09697 - 3.6.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 478.0
LYD2_k127_5863861_3 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 393.0
LYD2_k127_5863861_4 - K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 385.0
LYD2_k127_5863861_5 peptidoglycan binding K03642 - - 0.000000000000000000000000000000000000000000002094 169.0
LYD2_k127_5863861_6 Response regulator, receiver - - - 0.0000000000000000000000000000000000002213 146.0
LYD2_k127_5867418_0 Belongs to the UPF0753 family K09822 - - 3.31e-254 821.0
LYD2_k127_5867418_1 phosphorelay signal transduction system K02481 - - 3.194e-235 737.0
LYD2_k127_5867418_11 GPR1 FUN34 yaaH family protein K07034 - - 0.00000000000000002745 85.0
LYD2_k127_5867418_12 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 0.000000000000002077 89.0
LYD2_k127_5867418_13 GPR1 FUN34 yaaH family protein K07034 - - 0.00000000003746 66.0
LYD2_k127_5867418_14 GPR1 FUN34 yaaH family protein K07034 - - 0.000000009088 59.0
LYD2_k127_5867418_15 phosphorelay signal transduction system K02481 - - 0.00000001942 56.0
LYD2_k127_5867418_16 repressor - - - 0.00000002019 59.0
LYD2_k127_5867418_2 phosphorelay sensor kinase activity K02668,K10942 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008856 562.0
LYD2_k127_5867418_3 NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 548.0
LYD2_k127_5867418_4 NADH ubiquinone oxidoreductase subunit K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005999 465.0
LYD2_k127_5867418_5 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 426.0
LYD2_k127_5867418_6 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 293.0
LYD2_k127_5867418_7 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001042 253.0
LYD2_k127_5867418_8 phosphate ion binding K02040 - - 0.000000000000000000000000000000000000000000001174 178.0
LYD2_k127_5867418_9 Proton-conducting membrane transporter K12137 - - 0.000000000000000000000000000000000000001565 154.0
LYD2_k127_5869019_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003952 522.0
LYD2_k127_5869019_1 hmm pf02371 K07486 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 340.0
LYD2_k127_5869019_10 nuclease K16561 - - 0.0002177 44.0
LYD2_k127_5869019_11 Acetyltransferase (GNAT) domain - - - 0.0003129 47.0
LYD2_k127_5869019_2 Sel1 domain protein repeat-containing protein K07126 - - 0.0000000000000000000000000000000000000000000004661 174.0
LYD2_k127_5869019_3 Evidence 5 No homology to any previously reported sequences K07126 - - 0.000000000000000000000000000000000001886 157.0
LYD2_k127_5869019_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 - - 0.00000000000000004155 89.0
LYD2_k127_5869019_5 nuclease - - - 0.000000000008959 68.0
LYD2_k127_5869019_7 Outer membrane lipoprotein Slp family K07285 - - 0.00001766 55.0
LYD2_k127_5869019_8 Helix-hairpin-helix motif - - - 0.000132 48.0
LYD2_k127_5869019_9 transposase IS116 IS110 IS902 family protein K07486 - - 0.0001591 47.0
LYD2_k127_5873062_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 463.0
LYD2_k127_5873062_1 response to heat K07090 - - 0.0000000000000000000000000000000000000000000000000001747 192.0
LYD2_k127_5873062_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000002883 166.0
LYD2_k127_5873062_3 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.000000000000000000004769 93.0
LYD2_k127_5873062_4 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000001106 95.0
LYD2_k127_5873062_5 zinc ion binding K06204 - - 0.0000001336 58.0
LYD2_k127_5873062_6 Cytochrome c - - - 0.0000009366 52.0
LYD2_k127_5883812_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00342,K05575 - 1.6.5.3 3.723e-293 910.0
LYD2_k127_5883812_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00342 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 3.207e-261 812.0
LYD2_k127_5883812_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000000000000000000000000000000000000007973 192.0
LYD2_k127_5883812_11 sirohydrochlorin cobaltochelatase activity - - - 0.000000000000000000000000000000000000000000001733 169.0
LYD2_k127_5883812_12 Cytochrome c - - - 0.00000000000000000000000000000000692 142.0
LYD2_k127_5883812_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 3.446e-250 779.0
LYD2_k127_5883812_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 9.709e-218 687.0
LYD2_k127_5883812_4 NADH-quinone oxidoreductase K00341,K05568,K12139 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 599.0
LYD2_k127_5883812_5 CHASE3 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 586.0
LYD2_k127_5883812_6 Phosphodiester glycosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002184 280.0
LYD2_k127_5883812_7 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000385 271.0
LYD2_k127_5883812_8 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009652 272.0
LYD2_k127_5883812_9 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000003006 259.0
LYD2_k127_5885456_0 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 610.0
LYD2_k127_5885456_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000005641 177.0
LYD2_k127_5885456_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000001329 64.0
LYD2_k127_5902457_0 DNA-directed DNA polymerase activity K02347,K04477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 348.0
LYD2_k127_5902457_1 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 323.0
LYD2_k127_5902457_2 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 306.0
LYD2_k127_5902457_3 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006766 288.0
LYD2_k127_5902457_4 AMP binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005565 262.0
LYD2_k127_5902457_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002316 246.0
LYD2_k127_5902457_6 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000008964 230.0
LYD2_k127_5902457_8 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K12263 - - 0.0000000000000000000000000000000000000000000000002022 179.0
LYD2_k127_5905552_0 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000653 581.0
LYD2_k127_5905552_1 PP-loop family K21947 - 2.8.1.15 0.00000000000000000000002723 100.0
LYD2_k127_5905552_2 thiamine diphosphate biosynthetic process K03154 - - 0.00000000000000000000003104 102.0
LYD2_k127_5916170_1 - - - - 0.0000000001715 69.0
LYD2_k127_5916170_3 cheY-homologous receiver domain - - - 0.00000009216 58.0
LYD2_k127_5916170_4 - - - - 0.0000001287 57.0
LYD2_k127_5925407_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 595.0
LYD2_k127_5925407_1 transposase and inactivated derivatives, IS30 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 541.0
LYD2_k127_5925407_2 response to abiotic stimulus - - - 0.0000000000000000000000000005756 117.0
LYD2_k127_5935028_0 silver ion transport K15726 - - 2.777e-260 809.0
LYD2_k127_5935028_1 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 404.0
LYD2_k127_5935028_2 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 400.0
LYD2_k127_5935028_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003215 260.0
LYD2_k127_5935028_5 Cytochrome c K12263 - - 0.000000000000000000000000001194 115.0
LYD2_k127_5941964_0 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 419.0
LYD2_k127_5941964_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 342.0
LYD2_k127_5941964_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 0.00000000000000547 75.0
LYD2_k127_5942227_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1234.0
LYD2_k127_5942227_1 Formiminotransferase domain K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 432.0
LYD2_k127_5942227_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K01142,K10773 GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033683,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 3.1.11.2,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004315 342.0
LYD2_k127_5942227_3 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000000000000000000000000000000000000000000000000000003014 228.0
LYD2_k127_5942227_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000006834 216.0
LYD2_k127_5942227_6 Belongs to the bacterial ribosomal protein bS21 family K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000005198 111.0
LYD2_k127_5942227_7 gag-polyprotein putative aspartyl protease - - - 0.000000000000001636 85.0
LYD2_k127_5942381_0 Rubrerythrin K22405 - 1.6.3.4 0.0 1212.0
LYD2_k127_5942381_1 Iron-sulfur cluster-binding domain - - - 3.034e-277 855.0
LYD2_k127_5942381_2 Elongator protein 3, MiaB family, Radical SAM - - - 1.349e-210 657.0
LYD2_k127_5942381_3 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 345.0
LYD2_k127_5942381_5 zinc ion binding - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000002624 229.0
LYD2_k127_5942381_8 PFAM Iron-binding zinc finger CDGSH type - - - 0.0007747 43.0
LYD2_k127_5958419_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K19585 - - 0.0 1384.0
LYD2_k127_5969014_1 Sodium/calcium exchanger protein K07300 - - 0.0000000000000000000000000000000000000000000917 164.0
LYD2_k127_5969014_2 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0050896,GO:0051087 - 0.00000000000000000000000000000004628 127.0
LYD2_k127_5998086_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 301.0
LYD2_k127_5998086_1 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007102 260.0
LYD2_k127_5998086_2 COG2826 Transposase and inactivated derivatives, IS30 family K07482 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004803,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006313,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0030983,GO:0032135,GO:0032196,GO:0032991,GO:0032993,GO:0034641,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.0000000000000000008822 91.0
LYD2_k127_5999520_0 AcrB/AcrD/AcrF family K15726 - - 0.0 1543.0
LYD2_k127_5999520_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 561.0
LYD2_k127_5999520_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.000000000000000000000000000000000000000000000000000000000001162 212.0
LYD2_k127_6002182_0 coenzyme binding K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 422.0
LYD2_k127_6002182_1 - - - - 0.0000000000000000000000000000000000000000000000000002593 192.0
LYD2_k127_6002182_2 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.000000000000000000000000000000000000000001584 158.0
LYD2_k127_6002182_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000004068 158.0
LYD2_k127_6002182_5 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.00009016 44.0
LYD2_k127_6010391_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 529.0
LYD2_k127_6010391_2 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007825 250.0
LYD2_k127_6010391_3 histone H2A K63-linked ubiquitination - - - 0.0000000000000000000000000000000000000000000001803 174.0
LYD2_k127_6010391_4 domain, Protein K18491 - - 0.00000000000000000000004873 106.0
LYD2_k127_6025997_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 2.178e-273 862.0
LYD2_k127_6025997_1 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000001805 182.0
LYD2_k127_6031271_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 1.057e-198 634.0
LYD2_k127_6031271_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000001937 97.0
LYD2_k127_6075049_0 Putative transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 522.0
LYD2_k127_6075049_1 phage integrase domain protein SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003579 415.0
LYD2_k127_6099043_0 obsolete transcription factor activity, core RNA polymerase II binding K06959 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0044424,GO:0044444,GO:0044464,GO:0050896 - 0.0 1111.0
LYD2_k127_6099043_1 resolution of meiotic recombination intermediates K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001251 267.0
LYD2_k127_6099043_2 TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000001211 236.0
LYD2_k127_6099043_3 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000005461 217.0
LYD2_k127_6099043_4 ferroxidase activity K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.000000000000000000000000000000000000000000000000000000603 195.0
LYD2_k127_6099043_5 transport - - - 0.000000000000000000000000000000000000000000000183 178.0
LYD2_k127_6099043_6 Wd40 repeat-containing protein - - - 0.00000009954 62.0
LYD2_k127_6112338_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 4.278e-277 859.0
LYD2_k127_6112338_1 chaperone-mediated protein folding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007212 441.0
LYD2_k127_6112338_2 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006585 437.0
LYD2_k127_6121537_0 serine-type D-Ala-D-Ala carboxypeptidase activity K05366 GO:0003674,GO:0005488,GO:0005515,GO:0042802 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004584 490.0
LYD2_k127_6133510_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 310.0
LYD2_k127_6133510_1 Peptidase family M50 - - - 0.0007318 42.0
LYD2_k127_6136288_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005166 344.0
LYD2_k127_6136288_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000007794 248.0
LYD2_k127_6136288_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000008314 239.0
LYD2_k127_6136288_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000001134 80.0
LYD2_k127_615025_0 Cation transporter/ATPase, N-terminus - - - 2.045e-319 992.0
LYD2_k127_615025_1 AMP binding - - - 0.000000000000000004582 85.0
LYD2_k127_6172763_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 314.0
LYD2_k127_6172763_1 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000212 209.0
LYD2_k127_6172763_2 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000002209 185.0
LYD2_k127_6172763_4 PDZ DHR GLGF domain protein K04771 - 3.4.21.107 0.00000000000000002404 92.0
LYD2_k127_6172763_5 tail sheath protein K06907 - - 0.000000000000001446 78.0
LYD2_k127_6172763_6 EcsC protein family - - - 0.00000000103 61.0
LYD2_k127_6172763_7 zinc ion binding - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000209 51.0
LYD2_k127_6184523_0 Cytochrome c K12263 - - 5.33e-258 800.0
LYD2_k127_6184523_1 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000475 436.0
LYD2_k127_6184523_2 Cytochrome c K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000001349 237.0
LYD2_k127_6195966_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 328.0
LYD2_k127_6195966_3 - - - - 0.000000000000000000000000009655 109.0
LYD2_k127_6195966_6 two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.0000000000000167 80.0
LYD2_k127_6195966_7 Sulfate permease family - - - 0.000000004585 63.0
LYD2_k127_6212014_0 Domain of unknown function (DUF4105) - - - 9.993e-200 627.0
LYD2_k127_6212014_1 thiolester hydrolase activity K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001414 246.0
LYD2_k127_6212014_2 TRL-like protein family - - - 0.00000000000000000000000391 105.0
LYD2_k127_6212014_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K16079 - - 0.000000000000000000000009456 109.0
LYD2_k127_6226690_0 PFAM amino acid permease-associated region K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007563 286.0
LYD2_k127_6226690_1 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000006678 198.0
LYD2_k127_6268255_0 Belongs to the TPP enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 365.0
LYD2_k127_6268255_1 electron transfer activity - - - 0.0000000000000000000000000000000000000000000000000000000000000003639 222.0
LYD2_k127_6268255_2 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.00000000000000002475 83.0
LYD2_k127_6288200_1 Protein of unknown function (DUF3300) - - - 0.00000000134 60.0
LYD2_k127_6288200_2 nuclease K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 3.1.31.1 0.0000000174 56.0
LYD2_k127_6288200_4 response regulator, receiver - - - 0.0002688 47.0
LYD2_k127_6288200_5 PA14 domain - - - 0.0009819 49.0
LYD2_k127_6323193_0 GHKL domain K13598 - 2.7.13.3 1.859e-279 866.0
LYD2_k127_6323193_1 Bacterial regulatory protein, Fis family K13599 - - 4.286e-249 775.0
LYD2_k127_6323193_2 AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008085 512.0
LYD2_k127_6323193_3 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 310.0
LYD2_k127_6332553_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0030312,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0071944,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 484.0
LYD2_k127_6332553_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 290.0
LYD2_k127_635183_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 4.614e-255 789.0
LYD2_k127_635183_1 Surface antigen - - - 3.585e-196 617.0
LYD2_k127_635183_2 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 425.0
LYD2_k127_635183_3 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 403.0
LYD2_k127_635183_4 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 390.0
LYD2_k127_635183_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000163 276.0
LYD2_k127_635183_6 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000005815 226.0
LYD2_k127_635183_7 adenosylhomocysteine nucleosidase activity K01243,K03527 - 1.17.7.4,3.2.2.9 0.0000000000000000000000000000000000000000000000000000003592 203.0
LYD2_k127_635183_8 Squalene-hopene cyclase C-terminal domain K06045 - 4.2.1.129,5.4.99.17 0.0000000000008923 68.0
LYD2_k127_636409_0 Belongs to the citrate synthase family K01647,K01659 - 2.3.3.1,2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 534.0
LYD2_k127_636409_2 arsenate reductase (glutaredoxin) activity K00537 - 1.20.4.1 0.0000000000000000000000000000000000000000000007672 170.0
LYD2_k127_636409_4 Diguanylate cyclase - - - 0.0000000000000000001363 94.0
LYD2_k127_637028_0 Belongs to the CarB family K01955 - 6.3.5.5 2.652e-283 889.0
LYD2_k127_637028_1 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 365.0
LYD2_k127_637028_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004359 248.0
LYD2_k127_637028_4 PFAM Fimbrial assembly family protein K02461,K02662,K02663,K12289 - - 0.000000009089 63.0
LYD2_k127_637028_5 - - - - 0.00001553 55.0
LYD2_k127_638211_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 1.23e-204 645.0
LYD2_k127_638211_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 594.0
LYD2_k127_638211_10 RHS Repeat - - - 0.0002295 48.0
LYD2_k127_638211_2 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 547.0
LYD2_k127_638211_3 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 511.0
LYD2_k127_638211_4 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 377.0
LYD2_k127_638211_5 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 301.0
LYD2_k127_638211_6 general secretion pathway protein K10927 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003889 243.0
LYD2_k127_638211_9 FG-GAP repeat - - - 0.000000001 63.0
LYD2_k127_640452_0 efflux transmembrane transporter activity K03287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004743 434.0
LYD2_k127_640452_1 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 402.0
LYD2_k127_640452_2 Protein of unknown function (DUF3467) - - - 0.000000000000000000002186 100.0
LYD2_k127_641526_0 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 519.0
LYD2_k127_641526_1 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 432.0
LYD2_k127_641526_2 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 387.0
LYD2_k127_641526_3 Serine acetyltransferase, N-terminal K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 361.0
LYD2_k127_641526_4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 - 2.7.7.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 323.0
LYD2_k127_641526_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004917 280.0
LYD2_k127_641526_6 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000006116 263.0
LYD2_k127_641526_7 YacP-like NYN domain K06962 - - 0.000000000000000000000000001183 119.0
LYD2_k127_641526_8 phosphate starvation-inducible protein, PsiF - - - 0.000000000000000000000003289 106.0
LYD2_k127_641526_9 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 GO:0003674,GO:0003824,GO:0003849,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019438,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.54 0.00000001835 55.0
LYD2_k127_66066_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 2.674e-209 658.0
LYD2_k127_66066_1 saccharopine dehydrogenase activity K03340 - 1.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 359.0
LYD2_k127_66066_2 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000001205 200.0
LYD2_k127_66066_3 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337 - - 0.00000000000000000000000000000000000000000000002457 177.0
LYD2_k127_66066_5 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337 - - 0.0000000000000000000000000000012 134.0
LYD2_k127_662775_0 Sel1 domain protein repeat-containing protein K07126 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006544 267.0
LYD2_k127_662775_1 Bacterial type II/III secretion system short domain K02453 - - 0.0000000000000000000000000000000000000000001827 170.0
LYD2_k127_662775_2 - - - - 0.000000000000003695 76.0
LYD2_k127_662775_4 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000009766 72.0
LYD2_k127_662775_7 Terminase small subunit K07474 - - 0.0000004301 54.0
LYD2_k127_662775_8 Terminase small subunit K07474 - - 0.000001397 56.0
LYD2_k127_66730_0 Type ii and iii secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 606.0
LYD2_k127_66730_1 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.0000000000000000000000000000000000000000000000000000001261 198.0
LYD2_k127_66730_2 Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000000000000000000000000000001093 164.0
LYD2_k127_66730_3 resolution of meiotic recombination intermediates K05516 - - 0.0000000000005395 81.0
LYD2_k127_66730_4 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000715 55.0
LYD2_k127_66730_5 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.0000004463 52.0
LYD2_k127_667832_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 2.172e-239 747.0
LYD2_k127_667832_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000089 413.0
LYD2_k127_667832_2 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000008308 87.0
LYD2_k127_6708_0 hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000000000000001025 214.0
LYD2_k127_6708_1 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.0000000000000000000000000000007746 127.0
LYD2_k127_6708_2 Protein of unknown function (DUF3568) - - - 0.000000000000000002941 90.0
LYD2_k127_685538_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 5.128e-237 736.0
LYD2_k127_685538_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 415.0
LYD2_k127_685538_2 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009644 269.0
LYD2_k127_685538_3 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000007525 197.0
LYD2_k127_685538_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000006096 132.0
LYD2_k127_688872_0 - - - - 0.000000000000000000000000000000000000000000001633 166.0
LYD2_k127_688872_1 Belongs to the UPF0145 family - - - 0.00000000000000000000000000000000000000002379 155.0
LYD2_k127_688872_2 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.0000000000000000000000000000000000102 136.0
LYD2_k127_694486_0 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007081 350.0
LYD2_k127_694486_1 precorrin-2 dehydrogenase activity K02302,K02304 GO:0003674,GO:0003824,GO:0004851,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008757,GO:0009058,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019354,GO:0019438,GO:0032259,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046156,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 314.0
LYD2_k127_694486_10 Belongs to the 'phage' integrase family - - - 0.00000000000002189 78.0
LYD2_k127_694486_11 PhoQ Sensor - - - 0.000009026 49.0
LYD2_k127_694486_2 Mo-molybdopterin cofactor metabolic process K03638 - 2.7.7.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001314 277.0
LYD2_k127_694486_3 PFAM AIG2 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003826 244.0
LYD2_k127_694486_4 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000001746 218.0
LYD2_k127_694486_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000003849 188.0
LYD2_k127_694486_6 Thiamine-binding protein - - - 0.0000000000000000000000000000000000000000000000001367 178.0
LYD2_k127_694486_8 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00363,K05710 - 1.7.1.15 0.0000000000000000000000000000000000000001733 153.0
LYD2_k127_694486_9 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000001851 133.0
LYD2_k127_704165_0 - - - - 0.00000000000000000000000000000000000000000000000000000008102 203.0
LYD2_k127_704165_1 Mechanosensitive Ion channel - - - 0.00000000000000000000000000000000000000001036 162.0
LYD2_k127_704165_2 - - - - 0.00000000000000000000000000006367 119.0
LYD2_k127_704165_3 modulation by symbiont of host adenylate cyclase-mediated signal transduction K03775 - 5.2.1.8 0.000000000000000000004871 99.0
LYD2_k127_70720_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 9.573e-254 787.0
LYD2_k127_70720_1 MacB-like periplasmic core domain K09808 - - 1.945e-199 631.0
LYD2_k127_70720_2 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 493.0
LYD2_k127_70720_3 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003133 452.0
LYD2_k127_70720_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 379.0
LYD2_k127_70720_5 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 349.0
LYD2_k127_70720_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000001151 238.0
LYD2_k127_720838_0 AMP binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003508 344.0
LYD2_k127_720838_1 response regulator K02282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002844 263.0
LYD2_k127_720838_2 thiolester hydrolase activity K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000003712 226.0
LYD2_k127_720838_3 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000005638 226.0
LYD2_k127_720838_4 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000001772 204.0
LYD2_k127_720838_5 response regulator K02282 - - 0.000000000000000000000000000002664 124.0
LYD2_k127_720838_6 His Kinase A (phosphoacceptor) domain - - - 0.000005222 57.0
LYD2_k127_726473_0 PFAM RNA-directed DNA polymerase (Reverse transcriptase) K00986 - 2.7.7.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 610.0
LYD2_k127_726473_1 PFAM Haloacid dehalogenase domain protein hydrolase K01091 - 3.1.3.18 0.00000000000000000009325 89.0
LYD2_k127_733031_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000004211 187.0
LYD2_k127_733031_1 Sulfate permease family - - - 0.00000000000000000000000000000000000000000000008077 173.0
LYD2_k127_733031_2 HTH-like domain K07497 - - 0.000000000000000000000000393 109.0
LYD2_k127_733031_3 HTH-like domain K07497 - - 0.00000000000403 73.0
LYD2_k127_733031_4 HTH-like domain K07497 - - 0.0000000004693 61.0
LYD2_k127_748945_0 response regulator K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 604.0
LYD2_k127_748945_1 Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 544.0
LYD2_k127_748945_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 383.0
LYD2_k127_75938_0 protein secretion by the type I secretion system K11004 - - 0.0 1098.0
LYD2_k127_75938_1 serine-type endopeptidase activity K04771 - 3.4.21.107 7.295e-208 655.0
LYD2_k127_75938_10 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000001873 119.0
LYD2_k127_75938_11 - - - - 0.000000000000000000000000003923 110.0
LYD2_k127_75938_12 Putative regulatory protein - - - 0.0000000002747 61.0
LYD2_k127_75938_2 Elongation factor G, domain IV K02355 - - 1.529e-206 664.0
LYD2_k127_75938_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02022,K11003,K12532 - - 3.147e-195 619.0
LYD2_k127_75938_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00812 - 2.6.1.1 1.861e-194 614.0
LYD2_k127_75938_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006798 428.0
LYD2_k127_75938_6 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 354.0
LYD2_k127_75938_7 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001759 263.0
LYD2_k127_75938_8 Conserved hypothetical protein 95 - - - 0.00000000000000000000000000000000000000000000000000002132 194.0
LYD2_k127_75938_9 domain protein K10716 - - 0.000000000000000000000000000000000000000000000982 173.0
LYD2_k127_765915_0 PhoQ Sensor - - - 3.173e-203 657.0
LYD2_k127_765915_1 phosphoserine phosphatase activity K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 467.0
LYD2_k127_765915_10 Histidine kinase K20976 - - 0.0000000000000000003024 93.0
LYD2_k127_765915_11 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000001126 71.0
LYD2_k127_765915_2 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 453.0
LYD2_k127_765915_3 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 300.0
LYD2_k127_765915_4 phosphorelay signal transduction system K02282,K02482,K04757,K20977 - 2.7.11.1,2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000005239 254.0
LYD2_k127_765915_5 protein histidine kinase activity K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000008974 232.0
LYD2_k127_765915_6 protein homooligomerization - - - 0.000000000000000000000000000000000000000000000000000777 185.0
LYD2_k127_765915_7 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000000000000000000000002656 175.0
LYD2_k127_765915_8 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000002787 130.0
LYD2_k127_765915_9 antisigma factor binding - - - 0.000000000000000000000000000001418 125.0
LYD2_k127_770420_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 5.02e-218 683.0
LYD2_k127_770420_1 drug transmembrane transporter activity K03327 - - 3.385e-206 649.0
LYD2_k127_770420_2 - K02600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 8.074e-199 631.0
LYD2_k127_770420_3 Belongs to the sirtuin family. Class K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 360.0
LYD2_k127_770420_4 phosphatase activity K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004981 328.0
LYD2_k127_770420_5 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008169 259.0
LYD2_k127_770420_6 Thioredoxin domain - - - 0.0000000000000000000000000000000000001047 142.0
LYD2_k127_770420_9 23S rRNA-intervening sequence protein - - - 0.0005621 42.0
LYD2_k127_784394_0 Type II secretion system (T2SS), protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 554.0
LYD2_k127_784394_1 Type II/IV secretion system protein K02454,K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 388.0
LYD2_k127_78555_0 Elongation factor G C-terminus K06207 - - 2.6e-277 857.0
LYD2_k127_78555_2 AhpC/TSA family - - - 0.00000000000000000001328 93.0
LYD2_k127_787238_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 4.555e-279 863.0
LYD2_k127_787238_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 607.0
LYD2_k127_787238_11 - - - - 0.000000000000000000000000003533 111.0
LYD2_k127_787238_12 toxin-antitoxin pair type II binding K19159 - - 0.00000000000000000000000001222 110.0
LYD2_k127_787238_13 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.0000000000000000000005141 97.0
LYD2_k127_787238_15 YaeQ - - - 0.00007463 45.0
LYD2_k127_787238_2 D-gluconate metabolic process K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 518.0
LYD2_k127_787238_3 L-allo-threonine aldolase activity K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 465.0
LYD2_k127_787238_4 protein-(glutamine-N5) methyltransferase activity K00543,K16130,K18896,K18897,K21515 - 2.1.1.156,2.1.1.157,2.1.1.209,2.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 439.0
LYD2_k127_787238_5 nucleotidyltransferase activity K17882 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 339.0
LYD2_k127_787238_6 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 334.0
LYD2_k127_787238_7 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001217 247.0
LYD2_k127_787238_8 translation initiation factor activity K03113 GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000002293 167.0
LYD2_k127_787238_9 belongs to the thioredoxin family K00384,K03671 - 1.8.1.9 0.0000000000000000000000000000000000000008981 149.0
LYD2_k127_790493_0 pyruvate decarboxylase activity K04103 - 4.1.1.74 2.788e-275 855.0
LYD2_k127_790493_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 486.0
LYD2_k127_790493_2 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000001528 175.0
LYD2_k127_793683_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.0 1060.0
LYD2_k127_793683_1 glucan 1,4-alpha-glucosidase activity K01178 - 3.2.1.3 2.087e-254 792.0
LYD2_k127_797085_0 Integrase core domain K07497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 299.0
LYD2_k127_797085_1 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000005076 156.0
LYD2_k127_801938_0 trans-aconitate 2-methyltransferase activity K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 326.0
LYD2_k127_801938_1 glucosamine-6-phosphate deaminase activity K01057,K02564 - 3.1.1.31,3.5.99.6 0.0000000000000000000000000000000000000000000000000000000000004782 220.0
LYD2_k127_801938_2 MafB19-like deaminase K01485 - 3.5.4.1 0.00000000000000000000000000000002191 126.0
LYD2_k127_801938_3 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000002977 110.0
LYD2_k127_801938_4 - - - - 0.00000000000000004841 87.0
LYD2_k127_801938_5 Thiopurine S-methyltransferase (TPMT) - - - 0.00000000000001422 78.0
LYD2_k127_801938_6 - - - - 0.0000000000003085 69.0
LYD2_k127_801938_7 - - - - 0.0000000000003634 78.0
LYD2_k127_801938_8 - - - - 0.0003703 43.0
LYD2_k127_804641_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 606.0
LYD2_k127_804641_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 397.0
LYD2_k127_804641_2 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 291.0
LYD2_k127_804641_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000005616 271.0
LYD2_k127_804641_4 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000001207 109.0
LYD2_k127_805293_0 Glycosyl hydrolase family 63 C-terminal domain - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000007962 67.0
LYD2_k127_805293_1 - - - - 0.000000008468 60.0
LYD2_k127_832378_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.545e-217 692.0
LYD2_k127_832378_1 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 396.0
LYD2_k127_832378_2 Ftsk_gamma K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 368.0
LYD2_k127_832378_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 364.0
LYD2_k127_832378_4 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 286.0
LYD2_k127_832378_5 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03673 GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005623,GO:0006457,GO:0008150,GO:0008152,GO:0009987,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071236,GO:0140096 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004759 272.0
LYD2_k127_832378_6 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07285 - - 0.00000000000000000000000000000000000000000000000001791 188.0
LYD2_k127_832378_7 Toxic component of a toxin-antitoxin (TA) module. An RNase K18828 - - 0.00000000000000000000000000000000000000000000001223 177.0
LYD2_k127_832378_8 Antidote-toxin recognition MazE, bacterial antitoxin K18829 - - 0.0000000000000001508 81.0
LYD2_k127_832678_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0 3300.0
LYD2_k127_832678_1 phosphorelay sensor kinase activity K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 381.0
LYD2_k127_832678_2 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001854 252.0
LYD2_k127_832678_3 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000001284 239.0
LYD2_k127_832678_4 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000001603 225.0
LYD2_k127_832678_5 PFAM response regulator receiveR - - - 0.000000000000000000000000000000000000000000000000001472 187.0
LYD2_k127_832678_6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000004006 115.0
LYD2_k127_832678_7 CsbD-like - - - 0.000000000000000002729 90.0
LYD2_k127_832678_8 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000001835 74.0
LYD2_k127_832678_9 UPF0391 membrane protein - - - 0.0000000001483 63.0
LYD2_k127_835168_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.0 1489.0
LYD2_k127_835168_1 GTP-binding GTPase Middle Region K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 520.0
LYD2_k127_835168_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 442.0
LYD2_k127_835168_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 291.0
LYD2_k127_835168_4 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000004468 207.0
LYD2_k127_835168_5 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000008231 166.0
LYD2_k127_836222_0 AMP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002991 329.0
LYD2_k127_836222_1 signal-transduction protein containing cAMP-binding and CBS domains K02342,K05847,K07182 - 2.7.7.7 0.00000000000000000000000000000000000000000000002013 174.0
LYD2_k127_836222_2 PFAM nuclease (SNase domain protein) - - - 0.000000000000000002792 87.0
LYD2_k127_836222_3 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000007278 55.0
LYD2_k127_836222_5 Belongs to the SOS response-associated peptidase family - - - 0.0003365 45.0
LYD2_k127_836222_6 restriction endonuclease K07448 - - 0.0003695 46.0
LYD2_k127_84063_0 AcrB/AcrD/AcrF family - - - 0.0 1677.0
LYD2_k127_84063_1 Multicopper oxidase type 1 - - - 1.357e-259 814.0
LYD2_k127_84063_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 2.987e-217 682.0
LYD2_k127_84063_3 HlyD family secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 435.0
LYD2_k127_84063_4 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 377.0
LYD2_k127_84063_5 Copper resistance protein B precursor (CopB) K07233 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 303.0
LYD2_k127_84063_6 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000001036 160.0
LYD2_k127_84063_7 Superoxide dismutase K04565 - 1.15.1.1 0.000000000000000000000000000000005441 135.0
LYD2_k127_84063_8 Phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.0000000639 57.0
LYD2_k127_84063_9 DsrE/DsrF-like family K09004 - - 0.0000002535 56.0
LYD2_k127_841971_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 4.524e-277 876.0
LYD2_k127_841971_1 PFAM sigma-54 factor interaction domain-containing protein K00575,K12266 - 2.1.1.80 3.89e-202 655.0
LYD2_k127_841971_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008755 378.0
LYD2_k127_841971_3 PFAM Ammonia monooxygenase particulate methane monooxygenase, subunit C K10946 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 309.0
LYD2_k127_841971_4 - - - - 0.000000000000000000000000000000000000000000000000000000000009875 212.0
LYD2_k127_841971_5 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000002112 125.0
LYD2_k127_843079_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 4.43e-319 978.0
LYD2_k127_843079_1 DAHP synthetase I family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005754 477.0
LYD2_k127_843079_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 476.0
LYD2_k127_843079_3 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 283.0
LYD2_k127_843079_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000001327 258.0
LYD2_k127_843079_5 DDE superfamily endonuclease - - - 0.000001835 49.0
LYD2_k127_8433_0 glucose-6-phosphate dehydrogenase activity K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 406.0
LYD2_k127_851709_0 radical SAM domain protein - - - 0.0 1080.0
LYD2_k127_851709_1 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 331.0
LYD2_k127_851709_2 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.0000000000000000000000000000000000000000000000000000000000001285 215.0
LYD2_k127_851709_3 ParB-like nuclease domain K03497 - - 0.0000000000000000000000000000000000000000000000000000004025 198.0
LYD2_k127_851709_4 peroxiredoxin activity K00627,K01607 - 2.3.1.12,4.1.1.44 0.0000000000000000000000000000000000000000000000000000005694 194.0
LYD2_k127_865732_0 HTH-like domain K07497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078 377.0
LYD2_k127_865732_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000005128 126.0
LYD2_k127_865732_10 PFAM nuclease (SNase domain protein) - - - 0.00000221 49.0
LYD2_k127_865732_11 transposase IS116 IS110 IS902 family protein K07486 - - 0.000002304 49.0
LYD2_k127_865732_12 PFAM Transposase IS3 K07483 - - 0.000004449 53.0
LYD2_k127_865732_14 nuclease K01174 - 3.1.31.1 0.000579 49.0
LYD2_k127_865732_2 - - - - 0.00000000000000000000000000009724 121.0
LYD2_k127_865732_3 HTH-like domain K07497 - - 0.00000000000000000000000005064 111.0
LYD2_k127_865732_4 - - - - 0.00000000000004151 75.0
LYD2_k127_865732_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000433 75.0
LYD2_k127_865732_6 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.000000000004386 66.0
LYD2_k127_865732_8 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000004788 59.0
LYD2_k127_865732_9 Transposase K07483 - - 0.0000002052 55.0
LYD2_k127_8687_0 Indole-3-glycerol phosphate synthase K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 386.0
LYD2_k127_8687_1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 295.0
LYD2_k127_8687_2 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000002765 236.0
LYD2_k127_8687_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000001105 128.0
LYD2_k127_878079_0 MacB-like periplasmic core domain K02004 - - 2.585e-248 793.0
LYD2_k127_878079_1 Catalyzes the conversion of dihydroorotate to orotate K00226,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 517.0
LYD2_k127_878079_10 Excisionase - - - 0.00000000007725 64.0
LYD2_k127_878079_2 lipoprotein transporter activity K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004997 293.0
LYD2_k127_878079_3 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000441 287.0
LYD2_k127_878079_4 MraZ protein, putative antitoxin-like K03925 - - 0.00000000000000000000000000000000000000000000000000000000000000000002467 234.0
LYD2_k127_878079_5 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000519 187.0
LYD2_k127_878079_6 crossover junction endodeoxyribonuclease activity K01160 - 3.1.22.4 0.00000000000000000000000000000000000000000000000193 179.0
LYD2_k127_878079_7 Regulatory protein, FmdB family - - - 0.0000000000000000000000000000000000001961 143.0
LYD2_k127_878079_8 response regulator - - - 0.000000000000000000009382 94.0
LYD2_k127_878079_9 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000003083 87.0
LYD2_k127_88544_0 PFAM Formylglycine-generating sulfatase enzyme K20333 - - 0.0000000000000000000000000000000000000000000000000000002571 203.0
LYD2_k127_899494_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.453e-264 816.0
LYD2_k127_899494_1 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000000000000000000000000000000000000008578 177.0
LYD2_k127_902535_0 metalloendopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 393.0
LYD2_k127_902535_1 RNA-DNA hybrid ribonuclease activity K03471 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006884 330.0
LYD2_k127_902535_2 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000000138 116.0
LYD2_k127_902535_3 - - - - 0.0001929 48.0
LYD2_k127_905071_0 peptidyl-tyrosine sulfation - - - 9.104e-209 665.0
LYD2_k127_905071_1 TIR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 434.0
LYD2_k127_905071_2 wobble position uridine ribose methylation K03216 GO:0001510,GO:0002128,GO:0002130,GO:0002131,GO:0002132,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016427,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052665,GO:0052666,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.207 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003251 274.0
LYD2_k127_905071_3 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000005803 242.0
LYD2_k127_905071_4 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000003929 198.0
LYD2_k127_905071_6 resolution of meiotic recombination intermediates K05516 - - 0.000000000000000000000000000000000000000000007216 164.0
LYD2_k127_905071_7 Predicted membrane protein (DUF2127) - - - 0.00000000000000000000000000000000002595 140.0
LYD2_k127_925628_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 494.0
LYD2_k127_925628_1 Mitochondrial biogenesis AIM24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008325 401.0
LYD2_k127_925628_2 Domain of unknown function (DUF4105) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 310.0
LYD2_k127_925628_3 Protein of unknown function (DUF3015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 282.0
LYD2_k127_925628_4 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000002607 135.0
LYD2_k127_925628_5 Domain of unknown function (DUF3332) - - - 0.000000000000005944 85.0
LYD2_k127_948701_0 COGs COG3485 Protocatechuate 3 4-dioxygenase beta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
LYD2_k127_948701_1 - - - - 0.00000000000000000000005593 100.0
LYD2_k127_958188_0 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005553 521.0
LYD2_k127_958188_1 Phosphate acyltransferases K01897,K05939 - 2.3.1.40,6.2.1.20,6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007707 497.0
LYD2_k127_958188_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009769 274.0
LYD2_k127_958188_3 - - - - 0.000000000000000004814 85.0
LYD2_k127_968364_0 Belongs to the GPI family K01810 - 5.3.1.9 3.065e-247 770.0
LYD2_k127_968364_1 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006769 447.0
LYD2_k127_968364_2 Oxidoreductase molybdopterin binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000001445 242.0
LYD2_k127_972221_0 - - - - 0.000000000000000171 87.0
LYD2_k127_972221_2 Protein of unknown function (DUF1566) - - - 0.00000000006742 72.0
LYD2_k127_992651_0 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 439.0
LYD2_k127_992651_1 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 - 1.3.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 343.0
LYD2_k127_992651_3 - - - - 0.0000000000000000000000000000000000000000008119 162.0