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Overview

ID MAG02048
Name LYD3_bin.1
Sample SMP0054
Taxonomy
Kingdom Bacteria
Phylum Acidobacteriota
Class Blastocatellia
Order Pyrinomonadales
Family Pyrinomonadaceae
Genus OLB17
Species
Assembly information
Completeness (%) 69.7
Contamination (%) 2.66
GC content (%) 55.0
N50 (bp) 3,369
Genome size (bp) 1,844,280

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1851

Gene name Description KEGG GOs EC E-value Score Sequence
LYD3_k127_1006560_0 P22 coat protein-protein 5 domain protein - - - 0.00000000000000000000000000000000000000000000000001409 184.0
LYD3_k127_1006560_1 Phage portal protein, SPP1 Gp6-like - - - 0.000000000000000000000000000000000000002373 159.0
LYD3_k127_1029054_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009828 471.0
LYD3_k127_1029054_1 cytochrome c oxidase K02351 - - 0.000000000000000000000000000000000000000000000000001116 191.0
LYD3_k127_1029054_2 Cytochrome c oxidase, subunit III - - - 0.00000000000000000000000000007437 124.0
LYD3_k127_104702_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005811 372.0
LYD3_k127_104702_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 293.0
LYD3_k127_104702_2 methyltransferase activity - - - 0.00000000000000000000000000004437 126.0
LYD3_k127_1047259_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 529.0
LYD3_k127_1047259_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 360.0
LYD3_k127_1047259_2 TIGRFAM malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005843 351.0
LYD3_k127_1047259_3 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000001127 106.0
LYD3_k127_1047259_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000001433 102.0
LYD3_k127_1047259_5 Dihydroorotate dehydrogenase K00254 - 1.3.5.2 0.0000000000000000002502 88.0
LYD3_k127_1047259_6 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000001958 69.0
LYD3_k127_1070698_0 Radical SAM - - - 4.31e-202 644.0
LYD3_k127_1083044_0 Belongs to the ClpA ClpB family K03694 - - 0.00000000000000000000000000000000000000000000000000000000002499 220.0
LYD3_k127_1083044_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000004974 182.0
LYD3_k127_1083044_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000007891 100.0
LYD3_k127_1088126_0 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006459 380.0
LYD3_k127_1088126_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000533 173.0
LYD3_k127_1088126_2 Modulates RecA activity K03565 - - 0.00000001892 62.0
LYD3_k127_1088436_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002941 444.0
LYD3_k127_1088436_1 cation efflux - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 310.0
LYD3_k127_1088436_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008107 314.0
LYD3_k127_1088436_3 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000005897 99.0
LYD3_k127_1088436_4 Nuclease A inhibitor-like protein - - - 0.0000000000000002084 85.0
LYD3_k127_1088436_5 Belongs to the UPF0754 family - - - 0.000000008694 59.0
LYD3_k127_1094418_0 Protein of unknown function (DUF3341) - - - 0.0000000000000000000000000000000000000000000000000000000000000001642 225.0
LYD3_k127_1094418_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000003936 199.0
LYD3_k127_1094418_2 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000002005 63.0
LYD3_k127_1094418_3 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000002395 51.0
LYD3_k127_1095917_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003777 411.0
LYD3_k127_1095917_1 Hsp70 protein K04043 - - 0.0000000000000000000000000000000000000000000001313 173.0
LYD3_k127_1095917_2 - - - - 0.00003242 49.0
LYD3_k127_1099815_0 gluconolactonase activity - - - 0.0000000000000000000000000000000000000000000000000000000004287 217.0
LYD3_k127_1099815_1 - - - - 0.0005528 49.0
LYD3_k127_1111872_0 ATPases associated with a variety of cellular activities K05847 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 306.0
LYD3_k127_1111872_1 phosphate-selective porin O and P - - - 0.0000000003905 70.0
LYD3_k127_1111872_2 transport - - - 0.00009998 48.0
LYD3_k127_1139610_0 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000005118 169.0
LYD3_k127_1139610_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000003944 156.0
LYD3_k127_1139610_2 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000001485 86.0
LYD3_k127_1139610_3 Disulphide bond corrector protein DsbC K04084,K06888 - 1.8.1.8 0.00000000000001378 80.0
LYD3_k127_1155370_0 Major facilitator superfamily - - - 8.17e-196 619.0
LYD3_k127_1155370_1 nitric oxide reductase activity K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 338.0
LYD3_k127_1155370_2 membrane protein, TerC K05794 - - 0.0000000000000000000000001324 109.0
LYD3_k127_119873_0 O-Antigen ligase K02847 - - 0.00000000000000000000000000000000000000004408 169.0
LYD3_k127_119873_1 Tetratricopeptide repeat - - - 0.00001169 57.0
LYD3_k127_1213527_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000001006 274.0
LYD3_k127_1213527_1 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005374 263.0
LYD3_k127_1213527_2 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000005326 203.0
LYD3_k127_1213527_3 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000003798 187.0
LYD3_k127_1267193_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 384.0
LYD3_k127_1267193_1 - - - - 0.0000000000000000000000000000000000003395 151.0
LYD3_k127_1276130_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 382.0
LYD3_k127_1276130_1 NUDIX domain - - - 0.000000000000000000000004121 107.0
LYD3_k127_1276130_2 Protein of unknown function (DUF2752) - - - 0.0000000000000000000003795 101.0
LYD3_k127_1280256_0 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000003918 199.0
LYD3_k127_1280256_1 PFAM ATP corrinoid adenosyltransferase BtuR CobO CobP K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000002235 180.0
LYD3_k127_1281360_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 321.0
LYD3_k127_1281360_1 PFAM Protein kinase K12132 - 2.7.11.1 0.000004404 50.0
LYD3_k127_1284251_0 TIGRFAM FeS assembly ATPase SufC K09013 - - 0.000000000000000000000000000000000000000000000001654 174.0
LYD3_k127_1284251_1 Uncharacterized protein family (UPF0051) K09015 - - 0.00000000000000000000008345 105.0
LYD3_k127_1284251_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000001946 113.0
LYD3_k127_128676_0 Heat shock 70 kDa protein K04043 - - 1.296e-282 881.0
LYD3_k127_128676_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 379.0
LYD3_k127_128676_2 MerR HTH family regulatory protein K13640 - - 0.0000000000000000000000000000000000001137 145.0
LYD3_k127_128676_3 Carboxypeptidase regulatory-like domain - - - 0.000000001215 66.0
LYD3_k127_1288872_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 385.0
LYD3_k127_1288872_1 NfeD-like C-terminal, partner-binding - - - 0.000000000000000004838 89.0
LYD3_k127_1289747_0 Peptidase S46 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007091 271.0
LYD3_k127_1295861_0 FAD dependent oxidoreductase K00303,K21061 - 1.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 327.0
LYD3_k127_1295861_1 including yeast histone deacetylase and acetoin utilization protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 300.0
LYD3_k127_1295861_2 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000003065 234.0
LYD3_k127_1295861_3 PFAM TonB-dependent Receptor K16090 - - 0.00000000000000000000000000000000000000000000000000000000000000002774 228.0
LYD3_k127_1295861_4 Probable zinc-ribbon domain - - - 0.0000000001049 66.0
LYD3_k127_1297095_0 B12 binding domain - - - 0.00000000000000000000000008977 111.0
LYD3_k127_1297095_1 RNA recognition motif - - - 0.0000000000000000000000001262 110.0
LYD3_k127_1297095_2 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000006392 99.0
LYD3_k127_1320880_0 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000000000000000000000000000006257 153.0
LYD3_k127_1320880_1 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11900 - - 0.000000000000000000000000001202 121.0
LYD3_k127_1320880_2 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000002255 79.0
LYD3_k127_1320880_3 Tetratricopeptide repeat - - - 0.00000000002312 73.0
LYD3_k127_1347981_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002898 351.0
LYD3_k127_1347981_1 Protein of unknown function DUF58 - - - 0.00000000000000000000006837 113.0
LYD3_k127_1347981_2 COG4968 Tfp pilus assembly protein PilE K02655 - - 0.0000001733 59.0
LYD3_k127_1347981_3 Vacuolar processing enzyme K01369 - 3.4.22.34 0.0008326 44.0
LYD3_k127_1354898_0 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000009713 76.0
LYD3_k127_1354898_1 Polysaccharide biosynthesis/export protein K01991 - - 0.0003489 51.0
LYD3_k127_1354898_2 Polysaccharide biosynthesis/export protein K01991 - - 0.0006253 47.0
LYD3_k127_1358535_0 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004965 250.0
LYD3_k127_1358535_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000006119 167.0
LYD3_k127_1358535_2 peptidyl-prolyl isomerase K03771 - 5.2.1.8 0.000000000000002463 88.0
LYD3_k127_1364644_0 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 409.0
LYD3_k127_1364644_1 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000009648 205.0
LYD3_k127_1364644_2 Inositol monophosphatase K01082,K01092 - 3.1.3.25,3.1.3.7 0.00000525 50.0
LYD3_k127_1398865_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 555.0
LYD3_k127_1398865_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000009187 138.0
LYD3_k127_1398865_2 Acts as a magnesium transporter K06213 - - 0.00000000000000001494 93.0
LYD3_k127_1398865_3 ParE toxin of type II toxin-antitoxin system, parDE K19092 - - 0.00000000000004449 76.0
LYD3_k127_1398865_4 positive regulation of growth K07746 - - 0.00000000003225 67.0
LYD3_k127_1405485_0 C-terminal, D2-small domain, of ClpB protein K11907 - - 7.606e-220 700.0
LYD3_k127_1405485_1 Pfam:T6SS_VasB K11895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 301.0
LYD3_k127_1405485_2 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002179 271.0
LYD3_k127_1405485_3 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 0.0007427 42.0
LYD3_k127_1421074_0 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000000000000007032 256.0
LYD3_k127_1421074_1 - - - - 0.0000000000000000002659 97.0
LYD3_k127_1434976_0 - - - - 0.000000000000000000000000000000000000000000000000001851 191.0
LYD3_k127_1434976_1 PFAM response regulator receiver K07657 - - 0.000000000000000000000000000000000000000000000006519 177.0
LYD3_k127_1434976_2 phosphohistidine phosphatase K08296 - - 0.000000000000000000000000000000000001748 144.0
LYD3_k127_1447018_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 345.0
LYD3_k127_1447018_1 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000002513 183.0
LYD3_k127_1448979_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008522 321.0
LYD3_k127_1448979_1 ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000001103 260.0
LYD3_k127_1448979_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000002057 187.0
LYD3_k127_1448979_3 Glyoxalase - - - 0.00000000000000000000000000000000000000001265 156.0
LYD3_k127_1448979_4 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000001565 108.0
LYD3_k127_1448979_5 Tetratricopeptide repeat - - - 0.0000000000000000000000005508 115.0
LYD3_k127_1449066_0 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001989 297.0
LYD3_k127_1449066_1 ECF sigma factor - - - 0.000000000000000000000000000000000000000000001394 172.0
LYD3_k127_1452905_0 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003325 311.0
LYD3_k127_1452905_1 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07027 - - 0.00000001588 66.0
LYD3_k127_1453143_0 RecF RecN SMC N terminal domain K03546 - - 0.00000000000000000000000000000000000000000000000000000000146 212.0
LYD3_k127_1453143_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000008333 93.0
LYD3_k127_1453143_2 - - - - 0.000000000002747 70.0
LYD3_k127_1453143_3 Protein of unknown function DUF58 - - - 0.0000000002854 69.0
LYD3_k127_1453143_4 Putative adhesin - - - 0.00002728 55.0
LYD3_k127_146226_0 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000581 239.0
LYD3_k127_146226_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000003435 241.0
LYD3_k127_146226_2 - - - - 0.00000000000000000000000000000000000000001604 162.0
LYD3_k127_1464233_0 Polysaccharide lyase family 4, domain III - - - 0.0000000000000000000000000000000000000006239 168.0
LYD3_k127_1464233_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000001133 101.0
LYD3_k127_1486563_0 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 349.0
LYD3_k127_1486563_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000009046 195.0
LYD3_k127_1486563_2 Protein of unknown function (DUF3341) - - - 0.00000003677 55.0
LYD3_k127_1500117_0 Biotin carboxylase K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 589.0
LYD3_k127_1500117_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 467.0
LYD3_k127_1500117_10 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000008115 174.0
LYD3_k127_1500117_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000004518 169.0
LYD3_k127_1500117_12 Binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000003513 168.0
LYD3_k127_1500117_13 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000006765 150.0
LYD3_k127_1500117_14 Biotin-requiring enzyme K02160 - - 0.00000000000000000000000000000000001782 142.0
LYD3_k127_1500117_15 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000005464 123.0
LYD3_k127_1500117_16 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000006155 123.0
LYD3_k127_1500117_17 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000143 120.0
LYD3_k127_1500117_18 structural constituent of ribosome K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000005852 122.0
LYD3_k127_1500117_19 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000006773 74.0
LYD3_k127_1500117_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 429.0
LYD3_k127_1500117_20 Ribosomal protein L30 K02907 - - 0.00000000000001457 76.0
LYD3_k127_1500117_3 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 331.0
LYD3_k127_1500117_4 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 295.0
LYD3_k127_1500117_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003471 266.0
LYD3_k127_1500117_6 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000004317 212.0
LYD3_k127_1500117_7 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000001576 213.0
LYD3_k127_1500117_8 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000001272 199.0
LYD3_k127_1500117_9 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000001227 177.0
LYD3_k127_1513863_0 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009091 415.0
LYD3_k127_1513863_1 Flavin containing amine oxidoreductase K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000001663 274.0
LYD3_k127_1516980_0 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 370.0
LYD3_k127_1516980_1 Pfam:UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000001637 210.0
LYD3_k127_1520020_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.357e-239 751.0
LYD3_k127_1520020_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00003602 48.0
LYD3_k127_1525613_0 PFAM peptidase M16 domain protein K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000001999 241.0
LYD3_k127_1525613_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.00000000000000000000000000000000000000000000000000000000003753 209.0
LYD3_k127_1529889_0 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 418.0
LYD3_k127_1529889_1 - - - - 0.0003959 49.0
LYD3_k127_1532254_0 Belongs to the FGGY kinase family K00851 - 2.7.1.12 0.0000000000000000000000000000000000000006438 154.0
LYD3_k127_1532254_1 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000001568 143.0
LYD3_k127_1532254_2 elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000000252 142.0
LYD3_k127_1532254_3 Dihydrofolate reductase K00287 - 1.5.1.3 0.00000000000000000000000000185 119.0
LYD3_k127_1570337_0 PFAM Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 510.0
LYD3_k127_1598575_0 Thiolase, C-terminal domain K07508 - 2.3.1.16 3.842e-204 642.0
LYD3_k127_1598575_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000002717 66.0
LYD3_k127_159933_0 Mur ligase middle domain K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 293.0
LYD3_k127_159933_1 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000002203 268.0
LYD3_k127_159933_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000005802 195.0
LYD3_k127_159933_3 RNA recognition motif - - - 0.000000000000000000000000000004574 123.0
LYD3_k127_1609589_0 phosphoglycerate mutase activity K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 361.0
LYD3_k127_1609589_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 335.0
LYD3_k127_1609589_2 Conserved hypothetical protein 698 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001159 282.0
LYD3_k127_1609589_3 Inositol monophosphatase K01082,K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002052 275.0
LYD3_k127_1609589_4 Mur ligase, middle domain K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000009696 269.0
LYD3_k127_1609589_5 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000000002886 173.0
LYD3_k127_1609589_6 esterase - - - 0.0000000000000000000000000000000000000000001295 170.0
LYD3_k127_1609589_7 - - - - 0.0000000000000000000000000000000000000004326 154.0
LYD3_k127_1621639_0 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000001044 248.0
LYD3_k127_1621639_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000005831 231.0
LYD3_k127_1621639_2 - - - - 0.0000000000000000006931 94.0
LYD3_k127_1628184_0 Belongs to the ABC transporter superfamily K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 417.0
LYD3_k127_1628184_1 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007638 392.0
LYD3_k127_1628184_10 - - - - 0.000001546 59.0
LYD3_k127_1628184_2 'ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 350.0
LYD3_k127_1628184_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007941 344.0
LYD3_k127_1628184_4 PFAM Binding-protein-dependent transport system inner membrane component K02033,K15581,K15585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 338.0
LYD3_k127_1628184_5 TIGRFAM oligopeptide dipeptide ABC transporter, ATPase subunit K10823 - - 0.0000000000000000000000000000000000000000000000000000000003916 206.0
LYD3_k127_1628184_6 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.00000000000000000000000000000000000000000000008742 190.0
LYD3_k127_1628184_7 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.0000000000000000000000000000000000000000000004819 173.0
LYD3_k127_1628184_8 PFAM MazG nucleotide pyrophosphohydrolase - - - 0.0000000000000000000000000004044 115.0
LYD3_k127_1628184_9 tetratricopeptide repeat - - - 0.0000006876 61.0
LYD3_k127_1633078_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 602.0
LYD3_k127_1633078_1 protein involved in exopolysaccharide biosynthesis - - - 0.00000000002069 74.0
LYD3_k127_1649346_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 416.0
LYD3_k127_1650453_0 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 415.0
LYD3_k127_1655571_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000002096 206.0
LYD3_k127_1655571_1 lipocalin K03098 - - 0.0000000000000000000000000000000000000000000000000003624 190.0
LYD3_k127_1655571_2 regulatory protein, FmdB family - - - 0.0000000000000000001218 92.0
LYD3_k127_1655571_3 von Willebrand factor, type A - - - 0.0000001605 62.0
LYD3_k127_1656172_0 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009234 443.0
LYD3_k127_1656172_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000004619 259.0
LYD3_k127_1656172_2 Bacterial sugar transferase K13012 - - 0.00000000000000000000000000000000000000000001975 164.0
LYD3_k127_1656172_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000000000000005164 168.0
LYD3_k127_1656172_4 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.00000000000000000751 92.0
LYD3_k127_1656172_5 zinc-ribbon domain - - - 0.000002422 58.0
LYD3_k127_1657099_0 Amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008328 466.0
LYD3_k127_1657099_1 Alcohol dehydrogenase GroES-like domain K13979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 347.0
LYD3_k127_1657099_2 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000001507 254.0
LYD3_k127_1657099_3 COGs COG3797 conserved - - - 0.000000000000000000000000000001555 127.0
LYD3_k127_1680881_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 5.257e-261 810.0
LYD3_k127_1680881_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 392.0
LYD3_k127_168211_0 Protein of avirulence locus involved in temperature-dependent protein secretion K03217,K11898 - - 0.0000000000000000000000000000000000000000000000000000000001182 214.0
LYD3_k127_168211_1 ImpA, N-terminal, type VI secretion system K11902 - - 0.0000000000000000000000000000000000000007075 154.0
LYD3_k127_168211_2 protein conserved in bacteria K11891 - - 0.00000000003486 76.0
LYD3_k127_1689847_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 323.0
LYD3_k127_1689847_1 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000512 211.0
LYD3_k127_169207_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007416 494.0
LYD3_k127_169207_1 CO dehydrogenase flavoprotein C-terminal domain K11178 - 1.17.1.4 0.00000000000000000000000000006864 130.0
LYD3_k127_169207_2 Psort location CytoplasmicMembrane, score K20447 - 1.17.1.5 0.0000000000000000000004512 98.0
LYD3_k127_1707330_0 Polynucleotide kinase 3 phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000001514 174.0
LYD3_k127_1707330_1 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.000000000000000000000000000000000000000002879 171.0
LYD3_k127_1707330_2 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000006266 149.0
LYD3_k127_1707330_3 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0008668 42.0
LYD3_k127_1717696_0 PD-(D/E)XK nuclease superfamily K16898 - 3.6.4.12 7.384e-247 802.0
LYD3_k127_1717696_1 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004955 469.0
LYD3_k127_1717696_2 - - - - 0.0006269 47.0
LYD3_k127_1731429_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1168.0
LYD3_k127_1731429_1 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 329.0
LYD3_k127_1731429_2 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004857 298.0
LYD3_k127_1731429_3 dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009569 250.0
LYD3_k127_1731429_4 Putative glutamine amidotransferase K07114 - - 0.0000009124 61.0
LYD3_k127_1733148_0 amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 522.0
LYD3_k127_1733148_1 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008862 258.0
LYD3_k127_1743811_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 523.0
LYD3_k127_1743811_1 tyrosine K00501 GO:0000003,GO:0001101,GO:0001654,GO:0001666,GO:0001678,GO:0001754,GO:0001963,GO:0001975,GO:0002237,GO:0003007,GO:0003008,GO:0003674,GO:0003824,GO:0004497,GO:0004511,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005783,GO:0005790,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006570,GO:0006584,GO:0006585,GO:0006629,GO:0006631,GO:0006643,GO:0006665,GO:0006720,GO:0006725,GO:0006807,GO:0006810,GO:0006836,GO:0006950,GO:0006970,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007507,GO:0007564,GO:0007568,GO:0007591,GO:0007593,GO:0007600,GO:0007601,GO:0007605,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007617,GO:0007618,GO:0007619,GO:0007622,GO:0007623,GO:0007626,GO:0007631,GO:0007638,GO:0008016,GO:0008021,GO:0008049,GO:0008144,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0008344,GO:0009058,GO:0009072,GO:0009266,GO:0009314,GO:0009404,GO:0009410,GO:0009414,GO:0009415,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009612,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009651,GO:0009653,GO:0009712,GO:0009713,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009820,GO:0009887,GO:0009888,GO:0009898,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0010243,GO:0010259,GO:0010632,GO:0012505,GO:0012506,GO:0014070,GO:0014075,GO:0014823,GO:0015837,GO:0015842,GO:0016020,GO:0016043,GO:0016137,GO:0016491,GO:0016597,GO:0016705,GO:0016714,GO:0017085,GO:0017144,GO:0018958,GO:0018963,GO:0019098,GO:0019438,GO:0019725,GO:0019748,GO:0019752,GO:0019825,GO:0019899,GO:0019904,GO:0019953,GO:0021537,GO:0021543,GO:0021700,GO:0021987,GO:0022008,GO:0022404,GO:0022414,GO:0022607,GO:0023052,GO:0030133,GO:0030154,GO:0030182,GO:0030334,GO:0030424,GO:0030425,GO:0030534,GO:0030659,GO:0030900,GO:0031076,GO:0031090,GO:0031406,GO:0031410,GO:0031667,GO:0031960,GO:0031982,GO:0032094,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032879,GO:0033076,GO:0033162,GO:0033267,GO:0033500,GO:0033993,GO:0034284,GO:0034607,GO:0034617,GO:0034641,GO:0035094,GO:0035176,GO:0035178,GO:0035220,GO:0035240,GO:0035295,GO:0035690,GO:0035900,GO:0035902,GO:0036094,GO:0036293,GO:0036477,GO:0040011,GO:0040012,GO:0040040,GO:0042214,GO:0042221,GO:0042303,GO:0042330,GO:0042335,GO:0042414,GO:0042415,GO:0042416,GO:0042417,GO:0042418,GO:0042421,GO:0042423,GO:0042461,GO:0042462,GO:0042470,GO:0042493,GO:0042537,GO:0042592,GO:0042593,GO:0042745,GO:0042755,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043052,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043195,GO:0043204,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043434,GO:0043436,GO:0043473,GO:0043648,GO:0043679,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0045009,GO:0045202,GO:0045471,GO:0045472,GO:0046189,GO:0046483,GO:0046530,GO:0046677,GO:0046684,GO:0046872,GO:0046914,GO:0046958,GO:0046959,GO:0048037,GO:0048048,GO:0048066,GO:0048067,GO:0048070,GO:0048079,GO:0048082,GO:0048085,GO:0048468,GO:0048511,GO:0048512,GO:0048513,GO:0048545,GO:0048562,GO:0048568,GO:0048592,GO:0048593,GO:0048596,GO:0048598,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048770,GO:0048856,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0050953,GO:0050954,GO:0051179,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051262,GO:0051270,GO:0051289,GO:0051384,GO:0051385,GO:0051412,GO:0051602,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051705,GO:0051707,GO:0051716,GO:0052314,GO:0055082,GO:0055114,GO:0060179,GO:0060322,GO:0060429,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0070405,GO:0070482,GO:0070848,GO:0070887,GO:0071241,GO:0071248,GO:0071287,GO:0071310,GO:0071312,GO:0071316,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072359,GO:0090596,GO:0090741,GO:0097159,GO:0097164,GO:0097237,GO:0097305,GO:0097366,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098700,GO:0098793,GO:0098805,GO:0098916,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0150034,GO:1901135,GO:1901338,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901615,GO:1901617,GO:1901652,GO:1901654,GO:1901657,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903522,GO:2000026,GO:2000145,GO:2000274 1.14.16.2 0.000000000000000000000000000000000000000000000000000000000000000000004572 245.0
LYD3_k127_1743811_2 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000102 194.0
LYD3_k127_1743811_3 PFAM regulatory protein AsnC Lrp family K03719 - - 0.0000000000000000002923 90.0
LYD3_k127_174623_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008855 384.0
LYD3_k127_174623_1 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 338.0
LYD3_k127_174623_2 GAF domain - - - 0.0000000000000000000000000000000000000000004007 174.0
LYD3_k127_1748060_0 NAD(P)H-binding K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 349.0
LYD3_k127_1748060_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 338.0
LYD3_k127_1754156_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 351.0
LYD3_k127_1754156_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003082 277.0
LYD3_k127_1754156_2 - - - - 0.0000000000000000000000000000000000000043 153.0
LYD3_k127_1754156_3 - - - - 0.0000000000000000000003655 104.0
LYD3_k127_1755213_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 454.0
LYD3_k127_1755213_1 NAD(P) transhydrogenase, alpha subunit K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 429.0
LYD3_k127_1755213_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000001147 232.0
LYD3_k127_1755213_3 SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000001503 177.0
LYD3_k127_1755213_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000000000000000000000000002178 162.0
LYD3_k127_1756600_0 Dienelactone hydrolase family - - - 4.701e-280 874.0
LYD3_k127_1756600_1 Belongs to the UPF0102 family K07460 - - 0.0000000000000008375 83.0
LYD3_k127_175751_0 Peptidase family M23 K21472 - - 0.00000000000000000000000000000000000000000000002231 179.0
LYD3_k127_175751_1 Domain of unknown function (DUF4136) - - - 0.0000000000000000001107 95.0
LYD3_k127_175751_2 peptidase M15B and M15C DD-carboxypeptidase VanY - - - 0.000000000000002066 85.0
LYD3_k127_175751_3 ErfK ybiS ycfS ynhG family protein K16291 - - 0.00000000001914 76.0
LYD3_k127_1794233_0 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 363.0
LYD3_k127_1794233_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 302.0
LYD3_k127_1794233_2 YceI-like domain - - - 0.000000000000001362 85.0
LYD3_k127_1794233_3 - - - - 0.0000003765 61.0
LYD3_k127_180363_0 Mut7-C RNAse domain K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000002315 242.0
LYD3_k127_180363_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000001032 158.0
LYD3_k127_180363_2 S-adenosylmethionine decarboxylase K01611 - 4.1.1.50 0.0000000000000000000000000000003025 129.0
LYD3_k127_1821315_0 Transmembrane secretion effector - - - 0.0000000000000000000000000000002634 127.0
LYD3_k127_1821315_1 Putative ATP-dependent DNA helicase recG C-terminal K03655 - 3.6.4.12 0.000000001076 69.0
LYD3_k127_1821315_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000002956 66.0
LYD3_k127_1858205_0 Dehydrogenase K16173 - 1.3.99.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 497.0
LYD3_k127_1858205_1 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000006446 263.0
LYD3_k127_1858205_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000003719 165.0
LYD3_k127_187047_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000002207 244.0
LYD3_k127_187047_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000005593 210.0
LYD3_k127_187047_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.00000000000000000000000000000000000000002833 154.0
LYD3_k127_187047_3 membrane protein (DUF2127) - - - 0.000000000000000000000003559 109.0
LYD3_k127_187047_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000742 106.0
LYD3_k127_1872032_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002775 496.0
LYD3_k127_1872032_1 PFAM von Willebrand factor type A - - - 0.0000000000000000000000000000000000004153 153.0
LYD3_k127_1872032_2 von Willebrand factor, type A - - - 0.000000000000000000000002735 112.0
LYD3_k127_1872032_3 Putative esterase - - - 0.0000000000000000003729 94.0
LYD3_k127_1878737_0 Domain of unknown function (DUF1972) K12996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 400.0
LYD3_k127_1878737_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002153 274.0
LYD3_k127_1881040_0 4Fe-4S double cluster binding domain K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002527 313.0
LYD3_k127_1881040_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005885 306.0
LYD3_k127_1881040_2 carbohydrate transport K10544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002194 248.0
LYD3_k127_1898113_0 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 421.0
LYD3_k127_1912600_0 Domain of unknown function DUF87 K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000552 551.0
LYD3_k127_1912600_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000004156 96.0
LYD3_k127_1925547_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702,K08999 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009380,GO:0009628,GO:0032991,GO:0042802,GO:0044424,GO:0044464,GO:0050896,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 5.269e-267 836.0
LYD3_k127_1925547_1 SAICAR synthetase K01923,K13713 - 6.3.2.6,6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 350.0
LYD3_k127_1925547_2 FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 294.0
LYD3_k127_1947198_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 481.0
LYD3_k127_1947198_1 KR domain - - - 0.000000000000000000000000004955 115.0
LYD3_k127_1969116_0 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000006237 201.0
LYD3_k127_1969116_1 metallopeptidase activity - - - 0.000000000000000264 85.0
LYD3_k127_1996045_0 dextransucrase activity - - - 0.000000000000162 73.0
LYD3_k127_1996045_1 von Willebrand factor type A domain - - - 0.0000003198 63.0
LYD3_k127_2002752_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000083 368.0
LYD3_k127_2002752_1 HAD-superfamily hydrolase, subfamily IIB - - - 0.000000000000000000000000000000000003297 149.0
LYD3_k127_2002752_2 2'-5' RNA ligase superfamily K01975 - 3.1.4.58 0.0000000000000000000000000001525 123.0
LYD3_k127_2002752_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - - 0.0000000000000431 72.0
LYD3_k127_2002752_4 SPFH domain Band 7 family - - - 0.0000000000001712 76.0
LYD3_k127_2004521_0 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000004287 227.0
LYD3_k127_2004521_1 PFAM alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000007666 176.0
LYD3_k127_2004521_2 4-amino-4-deoxychorismate lyase K02619 - 4.1.3.38 0.0000001017 57.0
LYD3_k127_2004521_3 Modulates RecA activity K03565 - - 0.0002762 46.0
LYD3_k127_2006521_0 ERAP1-like C-terminal domain K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000003577 211.0
LYD3_k127_2006521_1 transcriptional regulator - - - 0.00000000000000000000000000001558 122.0
LYD3_k127_2006793_0 Transaldolase/Fructose-6-phosphate aldolase K00616 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 591.0
LYD3_k127_2016591_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009035 614.0
LYD3_k127_2016591_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000003473 63.0
LYD3_k127_2061841_0 PFAM Zinc carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008595 377.0
LYD3_k127_2061841_1 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000003651 72.0
LYD3_k127_206328_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 299.0
LYD3_k127_206328_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000205 286.0
LYD3_k127_206328_2 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.0000000000000000000000000000000003 138.0
LYD3_k127_206328_3 transcriptional regulator containing an HTH domain and an K03655 - 3.6.4.12 0.0000000000000000000000001002 118.0
LYD3_k127_2083696_0 GTP-binding protein TypA K06207 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001449 278.0
LYD3_k127_2083696_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000007397 173.0
LYD3_k127_2083696_2 glyoxalase III activity K00970 - 2.7.7.19 0.00000000000000000000000000000001136 130.0
LYD3_k127_2087989_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 419.0
LYD3_k127_2095991_0 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000008646 248.0
LYD3_k127_2095991_1 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000003273 177.0
LYD3_k127_2095991_2 TPR repeat - - - 0.000000000000000000000000000006055 137.0
LYD3_k127_2101683_0 PLD-like domain K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 494.0
LYD3_k127_2101683_1 thiamine diphosphate biosynthetic process K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 316.0
LYD3_k127_2101683_2 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002874 250.0
LYD3_k127_2101683_3 HD domain - - - 0.000000000000000000000000000000000000000000000000000000005216 204.0
LYD3_k127_2101683_4 MoaE protein K21142 - 2.8.1.12 0.00000000000000000000000000000000000002589 149.0
LYD3_k127_2101683_5 thiamine biosynthesis protein ThiS K03154 - - 0.00000000001711 66.0
LYD3_k127_2101683_6 Mo-molybdopterin cofactor metabolic process K03636,K03637,K03752,K21142 - 2.7.7.77,2.8.1.12,4.6.1.17 0.00000000291 61.0
LYD3_k127_2101683_7 - - - - 0.0000001353 63.0
LYD3_k127_2101683_8 SpoIVB peptidase S55 - - - 0.000001546 54.0
LYD3_k127_2108810_0 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 322.0
LYD3_k127_2108810_1 TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000000000000000004092 164.0
LYD3_k127_2108810_2 TonB-dependent receptor - - - 0.000000000000000000000002261 108.0
LYD3_k127_2117854_0 Zinc metalloprotease (Elastase) K20274 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 331.0
LYD3_k127_2138717_0 TIGRFAM phosphoribosylaminoimidazolecarboxamide formyltransferase IMP cyclohydrolase K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 377.0
LYD3_k127_2138717_1 Protease with the C-terminal PDZ domain - - - 0.0005784 51.0
LYD3_k127_214132_0 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008353 387.0
LYD3_k127_214132_1 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000002829 214.0
LYD3_k127_214132_2 Thioredoxin - - - 0.000000000000007071 76.0
LYD3_k127_214132_3 NADH flavin oxidoreductase NADH oxidase - - - 0.000002095 50.0
LYD3_k127_214804_0 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 467.0
LYD3_k127_214804_1 glutamate-1-semialdehyde 2,1-aminomutase activity K01845 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016020,GO:0016853,GO:0016866,GO:0016869,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040007,GO:0042168,GO:0042286,GO:0042440,GO:0042802,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000181 201.0
LYD3_k127_215095_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001358 288.0
LYD3_k127_215095_1 PFAM glycosyl transferase family 2 - - - 0.0000001519 55.0
LYD3_k127_2164039_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 544.0
LYD3_k127_2164039_1 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000862 317.0
LYD3_k127_2174831_0 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005836 404.0
LYD3_k127_2174831_1 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000665 110.0
LYD3_k127_2184428_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000009025 194.0
LYD3_k127_2184428_1 - - - - 0.00000000000000000000000000000001647 134.0
LYD3_k127_21851_0 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009304 306.0
LYD3_k127_21851_1 Ribosomal protein S1 K02945 - - 0.0000000000000000000000000000000002012 139.0
LYD3_k127_2196726_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 408.0
LYD3_k127_2196726_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000002691 72.0
LYD3_k127_2196726_2 lipopolysaccharide heptosyltransferase K02841,K02843 - - 0.000008581 51.0
LYD3_k127_2197348_0 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 354.0
LYD3_k127_2197348_1 Domain of unknown function (DUF1508) K09946 GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000005337 151.0
LYD3_k127_2197348_2 - - - - 0.000000000000000000000000000000001551 133.0
LYD3_k127_2199674_0 ABC transporter transmembrane region K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 551.0
LYD3_k127_2199674_1 OmpA-like transmembrane domain K16079 - - 0.000000000000000000000000000000000000000000000000000000000000006087 227.0
LYD3_k127_2199674_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000002315 111.0
LYD3_k127_2200527_0 TonB-dependent Receptor Plug Domain K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000001915 225.0
LYD3_k127_2200527_1 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.0000001996 53.0
LYD3_k127_2216373_0 Bacterial capsule synthesis protein PGA_cap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 321.0
LYD3_k127_2216373_1 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003619 289.0
LYD3_k127_2216373_2 Multicopper oxidase K06324 - 1.16.3.3 0.0000000000000003463 79.0
LYD3_k127_2230252_0 DNA polymerase K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 324.0
LYD3_k127_2230252_1 Zinc ribbon domain protein K07164 - - 0.0000000000000004537 87.0
LYD3_k127_2230252_2 Tetratricopeptide repeat - - - 0.00000001734 67.0
LYD3_k127_2242568_0 Two component, sigma54 specific, transcriptional regulator, Fis family K07713,K07714,K19641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 447.0
LYD3_k127_2242568_1 phosphorelay sensor kinase activity K07708 - 2.7.13.3 0.00000000000000000000000004456 112.0
LYD3_k127_2242568_2 Pfam:N_methyl_2 - - - 0.0000000000000000000386 98.0
LYD3_k127_2254703_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.1.33 0.00000000000000000000000000000000000000000000000002304 188.0
LYD3_k127_2254703_1 membrane - - - 0.0000006808 53.0
LYD3_k127_2254703_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0001777 46.0
LYD3_k127_2256827_0 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 312.0
LYD3_k127_2286069_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000001481 227.0
LYD3_k127_2286069_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000003375 222.0
LYD3_k127_2307206_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 524.0
LYD3_k127_2307206_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01751,K01754,K06016,K17989,K21400 GO:0000287,GO:0003674,GO:0003824,GO:0003941,GO:0004793,GO:0004794,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006090,GO:0006464,GO:0006520,GO:0006549,GO:0006563,GO:0006565,GO:0006566,GO:0006567,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008838,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009071,GO:0009081,GO:0009082,GO:0009097,GO:0009987,GO:0016020,GO:0016053,GO:0016054,GO:0016597,GO:0016829,GO:0016830,GO:0016832,GO:0016840,GO:0016841,GO:0016853,GO:0016854,GO:0016855,GO:0017144,GO:0018249,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0030378,GO:0030848,GO:0031406,GO:0032787,GO:0036094,GO:0036211,GO:0036361,GO:0042219,GO:0042802,GO:0042803,GO:0042866,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046416,GO:0046437,GO:0046872,GO:0046983,GO:0047661,GO:0048037,GO:0050662,GO:0070178,GO:0070179,GO:0070279,GO:0071704,GO:0071944,GO:0072330,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.3.1.263,3.5.1.6,3.5.1.87,4.3.1.15,4.3.1.17,4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 395.0
LYD3_k127_2307206_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 317.0
LYD3_k127_2307206_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 284.0
LYD3_k127_2307206_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000001089 230.0
LYD3_k127_2307206_5 amine dehydrogenase activity - - - 0.000000000000000000000000000000000001962 141.0
LYD3_k127_2307206_6 Membrane - - - 0.000000000000000000000000007647 115.0
LYD3_k127_2307206_7 - - - - 0.0000000000000000002604 92.0
LYD3_k127_2315600_0 PFAM DNA RNA non-specific endonuclease K01173 - - 0.00000000000000000000000000000000000000000000000000000000000000000001663 241.0
LYD3_k127_2315600_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000002199 195.0
LYD3_k127_2315600_2 - - - - 0.000000000000000000000000000000000000000000000000003489 188.0
LYD3_k127_2325150_0 SMART tyrosine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003091 297.0
LYD3_k127_2325150_1 von Willebrand factor, type A - - - 0.00000000000000000000000001678 121.0
LYD3_k127_2325150_2 - - - - 0.0005415 49.0
LYD3_k127_2326971_0 PFAM Pilus assembly protein PilO K02664 - - 0.000000001565 67.0
LYD3_k127_2326971_1 PFAM Fimbrial assembly family protein K02663 - - 0.00002224 55.0
LYD3_k127_2360192_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 327.0
LYD3_k127_2386559_0 polyphosphate kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004933 374.0
LYD3_k127_2386559_1 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 363.0
LYD3_k127_2386559_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000001616 205.0
LYD3_k127_2386559_3 periplasmic or secreted lipoprotein - - - 0.000000000000000000000000000000000000000551 160.0
LYD3_k127_2386559_4 - - - - 0.00000000000000000000000000000006293 126.0
LYD3_k127_2386559_5 Rhodanese Homology Domain - - - 0.0000000000001006 72.0
LYD3_k127_2386559_6 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.0000000000001112 81.0
LYD3_k127_2386559_7 - - - - 0.0000000003059 65.0
LYD3_k127_2386559_8 Rhodanese Homology Domain - - - 0.00009243 46.0
LYD3_k127_2390706_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000002219 220.0
LYD3_k127_2390706_1 chemotaxis protein K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000006755 193.0
LYD3_k127_2418579_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 8.207e-241 764.0
LYD3_k127_2418579_1 DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 317.0
LYD3_k127_2418579_2 COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000009572 211.0
LYD3_k127_2418579_3 PFAM S23 ribosomal protein - - - 0.0000000000000000000000000000000000000000001391 162.0
LYD3_k127_2436913_0 protein conserved in bacteria - - - 1.201e-200 640.0
LYD3_k127_2436913_1 Myo-inositol-1-phosphate synthase GAPDH domain protein K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001232 278.0
LYD3_k127_2455779_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006356 589.0
LYD3_k127_2455779_1 EamA-like transporter family K07790 - - 0.000000000000000000000000000000000000000000027 173.0
LYD3_k127_2455779_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000003398 153.0
LYD3_k127_2455779_3 Conserved hypothetical protein 95 - - - 0.0000000000000000000000000000000000007723 146.0
LYD3_k127_2455779_4 TIGRFAM RNA methyltransferase, RsmD family - - - 0.000000000000000004474 95.0
LYD3_k127_2463208_0 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001637 270.0
LYD3_k127_2463208_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0051179,GO:0051234,GO:0071702 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000003378 266.0
LYD3_k127_2466223_0 - - - - 0.00000000000000000000000000000003848 143.0
LYD3_k127_248416_0 domain, Protein - - - 0.0005348 52.0
LYD3_k127_2486130_0 Protein of unknown function (DUF445) - - - 0.0000000000000000000000000000000003588 149.0
LYD3_k127_2487346_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 7.638e-200 634.0
LYD3_k127_2487346_1 SMART PDZ DHR GLGF domain protein - - - 0.000000000000000000000002132 111.0
LYD3_k127_2494730_0 in Yersinia the HmsR protein is an inner membrane protein K11936 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 571.0
LYD3_k127_2501009_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 2.529e-204 655.0
LYD3_k127_2501009_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 391.0
LYD3_k127_2501009_2 Ring hydroxylating alpha subunit (catalytic domain) K00499 - 1.14.15.7 0.000000000000000000000000000000000000000002575 157.0
LYD3_k127_2501885_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 402.0
LYD3_k127_2501885_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000587 199.0
LYD3_k127_2501885_2 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000273 58.0
LYD3_k127_254663_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 387.0
LYD3_k127_254663_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919,K16924 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000001541 217.0
LYD3_k127_254663_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.00000000000000000000000000000000000000000000000000000003962 203.0
LYD3_k127_254663_3 MerR, DNA binding K08365 - - 0.0000000000000000000000000000000002682 138.0
LYD3_k127_254663_4 protein with SCP PR1 domains - - - 0.00000000000000000000195 102.0
LYD3_k127_2591654_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 3.219e-231 729.0
LYD3_k127_2594666_0 Peptidase S9 prolyl oligopeptidase active site - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 556.0
LYD3_k127_2594666_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000735 302.0
LYD3_k127_2594666_2 exo-alpha-(2->6)-sialidase activity K01406 - 3.4.24.40 0.0000007985 54.0
LYD3_k127_2624928_0 POT family K03305 - - 5.549e-231 727.0
LYD3_k127_2624928_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 450.0
LYD3_k127_2624928_2 cobalamin binding K01647,K18997,K22491 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000688 241.0
LYD3_k127_2624928_3 Lipocalin / cytosolic fatty-acid binding protein family K03098 - - 0.0000000000000000000000000000000000000000000000000000004347 198.0
LYD3_k127_2624928_4 - - - - 0.000000000000000000000000000000004185 134.0
LYD3_k127_2630415_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 427.0
LYD3_k127_2630415_1 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009718 410.0
LYD3_k127_2630415_2 Zn-dependent hydrolase, glyoxylase - - - 0.0000000000000000000000000000000000000007565 157.0
LYD3_k127_2630415_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000001424 59.0
LYD3_k127_2650026_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009545 469.0
LYD3_k127_2650026_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000005174 221.0
LYD3_k127_2650026_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.000000000000000000000000000000000000000000000000000000000000003677 220.0
LYD3_k127_2650026_3 - - - - 0.000000000000000000000000000000000000000000000003155 185.0
LYD3_k127_2650026_4 Ferredoxin K00529,K04755,K08952,K08953,K08954,K15765 GO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0046858 1.18.1.3 0.00000000000000000000000000000000000003284 157.0
LYD3_k127_2650026_5 Tyrosine phosphatase family - - - 0.000000000000000000000003163 110.0
LYD3_k127_2650026_6 Domain of unknown function (DUF4956) - - - 0.000000002495 68.0
LYD3_k127_2657646_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 291.0
LYD3_k127_2657646_1 with different specificities (related to short-chain alcohol K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007269 279.0
LYD3_k127_2657646_2 Putative methyltransferase K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000048 222.0
LYD3_k127_2657646_3 Provides the (R)-glutamate required for cell wall biosynthesis K01776 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008881,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016853,GO:0016854,GO:0016855,GO:0030203,GO:0034645,GO:0036361,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0047661,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 5.1.1.3 0.00000000000000000000000000000000000000000000000000003266 195.0
LYD3_k127_2657646_4 PFAM Rhomboid family K19225 - 3.4.21.105 0.00000000000000000000002236 110.0
LYD3_k127_2657646_5 Tetratricopeptide repeat - - - 0.000213 46.0
LYD3_k127_2665429_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 4.564e-194 609.0
LYD3_k127_2665429_1 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000005901 209.0
LYD3_k127_2665429_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000001209 157.0
LYD3_k127_2665429_3 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000002698 82.0
LYD3_k127_2665429_4 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000002107 52.0
LYD3_k127_2676220_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000004123 209.0
LYD3_k127_2676220_1 Protein of unknown function (DUF971) K03593 - - 0.00000000000000000008976 92.0
LYD3_k127_2676220_2 general stress protein - - - 0.000000000001737 74.0
LYD3_k127_2676220_3 - - - - 0.0007461 50.0
LYD3_k127_2680135_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 611.0
LYD3_k127_2680135_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000248 269.0
LYD3_k127_2680467_0 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007342 276.0
LYD3_k127_2680467_1 Aminotransferase, class V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000154 261.0
LYD3_k127_2680467_2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000006712 98.0
LYD3_k127_2680467_3 Protein of unknown function (DUF952) - - - 0.000000000000000000002104 96.0
LYD3_k127_268938_0 PFAM Forkhead-associated protein - - - 0.0000000000000000007817 93.0
LYD3_k127_268938_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000527 81.0
LYD3_k127_2697058_0 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000001184 143.0
LYD3_k127_2715252_0 PFAM peptidase K01438 - 3.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 308.0
LYD3_k127_2715252_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.00000000000000000000000005606 109.0
LYD3_k127_2718436_0 PAP2 superfamily - - - 0.00000000000000000000000000000000000000002633 169.0
LYD3_k127_2718436_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000003407 114.0
LYD3_k127_2718436_2 Transcriptional regulator - - - 0.00000000000000000008144 103.0
LYD3_k127_2718436_3 Belongs to the ompA family - - - 0.00000000002564 69.0
LYD3_k127_2728107_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000003809 201.0
LYD3_k127_2728107_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000001244 95.0
LYD3_k127_2728107_2 Subtilase family - - - 0.0000000008873 70.0
LYD3_k127_2745032_0 Thiolase, C-terminal domain K00632 - 2.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 462.0
LYD3_k127_2745032_1 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000000000000000000000000000000000004871 168.0
LYD3_k127_2771982_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01537 - 3.6.3.8 0.0 1077.0
LYD3_k127_2771982_1 epimerase - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 467.0
LYD3_k127_2771982_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000001797 126.0
LYD3_k127_278261_0 Rossmann-like domain - - - 0.0000000000000000004446 93.0
LYD3_k127_278261_1 flagella protein K07327,K07328 - - 0.0000007401 63.0
LYD3_k127_2784145_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 383.0
LYD3_k127_2784145_1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009611 289.0
LYD3_k127_2784145_2 Lipid-A-disaccharide synthetase K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000002592 179.0
LYD3_k127_2784145_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000001494 153.0
LYD3_k127_2784145_4 PFAM Tetratricopeptide repeat - - - 0.000000000000000000000000000000000001604 149.0
LYD3_k127_2784145_5 Transcriptional regulator - - - 0.0005401 43.0
LYD3_k127_2788750_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 372.0
LYD3_k127_2788750_1 Cytochrome C and Quinol oxidase polypeptide I - - - 0.00000000000000000000000000000000000000000000000000000000000000003056 228.0
LYD3_k127_2788750_2 Cupin domain - - - 0.0004975 47.0
LYD3_k127_2815326_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 584.0
LYD3_k127_2815326_1 LTXXQ motif family protein K06006 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006457,GO:0008150,GO:0009987,GO:0010033,GO:0014070,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0044464,GO:0050896,GO:0051082,GO:0061077,GO:1990507 - 0.00000635 55.0
LYD3_k127_2855344_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.168e-217 686.0
LYD3_k127_2855344_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 324.0
LYD3_k127_2855344_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005623,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002365 278.0
LYD3_k127_2855344_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000001382 200.0
LYD3_k127_2855344_4 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000008305 189.0
LYD3_k127_2855344_5 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000003056 178.0
LYD3_k127_2855344_6 Protein of unknown function (DUF1569) - - - 0.000000000000000000000000000000002647 134.0
LYD3_k127_2862036_0 SMART tyrosine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000007489 162.0
LYD3_k127_2862036_1 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000000000000000000000000019 139.0
LYD3_k127_2887205_0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 405.0
LYD3_k127_2887205_1 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001294 260.0
LYD3_k127_2887205_2 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009055,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0022900,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046429,GO:0046490,GO:0046872,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000001492 145.0
LYD3_k127_2887205_3 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.00000000000000000000000000001964 122.0
LYD3_k127_289231_0 Two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 523.0
LYD3_k127_289231_1 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 346.0
LYD3_k127_289231_2 Domain of Unknown function (DUF542) K07322 - - 0.000000000000000000000000000000000000000000000000000000000000311 219.0
LYD3_k127_289231_3 - - - - 0.000000000004961 69.0
LYD3_k127_2931123_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 308.0
LYD3_k127_2931123_1 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000001298 239.0
LYD3_k127_2931123_2 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000003151 208.0
LYD3_k127_2931123_3 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000007485 116.0
LYD3_k127_2931123_4 mttA/Hcf106 family K03116,K03117 - - 0.000000001621 64.0
LYD3_k127_2931123_5 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000002369 57.0
LYD3_k127_2937148_0 Glycosyl hydrolase family 57 K16149 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 490.0
LYD3_k127_2937148_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 320.0
LYD3_k127_2943985_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.000000000000000000000000000000000000000000000000005415 203.0
LYD3_k127_2943985_1 Type II and III secretion system protein K02666 - - 0.000000000000000002033 94.0
LYD3_k127_2963290_0 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003355 249.0
LYD3_k127_2963290_1 Protein of unknown function (DUF1501) - - - 0.00000000000000000000000000000000000000000000000000000003252 199.0
LYD3_k127_2963290_2 Methyltransferase domain - - - 0.000000000000000000000000000000004799 136.0
LYD3_k127_2969155_0 PFAM Galactose-1-phosphate uridyl transferase K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 416.0
LYD3_k127_2969155_1 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.0000000000000000000000000000000000000000000000000000000000000002585 229.0
LYD3_k127_2969155_2 6-phospho-beta-galactosidase activity - - - 0.000000000000000000000000000000000000000000004314 167.0
LYD3_k127_2972479_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 389.0
LYD3_k127_2972479_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007669 332.0
LYD3_k127_2972479_2 TIGRFAM stage V sporulation protein E, cell division protein FtsW K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 297.0
LYD3_k127_2972479_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000007742 263.0
LYD3_k127_2981720_0 RmlD substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 449.0
LYD3_k127_2981720_1 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000000000000000000000000000000003198 185.0
LYD3_k127_2981720_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000002243 126.0
LYD3_k127_2981720_3 serine threonine protein kinase - - - 0.0000000000000000002362 96.0
LYD3_k127_2981720_4 Dehydrogenase E1 component K00164 - 1.2.4.2 0.000000812 53.0
LYD3_k127_298262_0 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000001521 237.0
LYD3_k127_298262_1 TIGRFAM Outer membrane assembly lipoprotein YfiO K05807 - - 0.00000000000000000000000000000005751 142.0
LYD3_k127_2984539_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 1.076e-200 635.0
LYD3_k127_2984539_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005451 499.0
LYD3_k127_2984539_2 C-terminal, D2-small domain, of ClpB protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004442 426.0
LYD3_k127_2984539_3 Methionine gamma-lyase K01761 - 4.4.1.11 0.00000000000000000000000000000000005807 136.0
LYD3_k127_2996614_0 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000008523 242.0
LYD3_k127_2996614_1 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.00000000000000000000000000000000000000000000000001439 192.0
LYD3_k127_2996614_2 Lecithin:cholesterol acyltransferase - - - 0.0000000000000000000000000000000000000000000001563 186.0
LYD3_k127_2996614_3 PASTA K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.0000000000000000000000000000000009639 147.0
LYD3_k127_2996614_4 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000147 126.0
LYD3_k127_2996614_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000004442 53.0
LYD3_k127_2996614_6 ATP synthase I chain - - - 0.0001189 50.0
LYD3_k127_2996614_7 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0007961 48.0
LYD3_k127_3000220_0 membrane protein, TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 427.0
LYD3_k127_3000220_1 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002735 240.0
LYD3_k127_3000220_2 Protein of unknown function, DUF480 K09915 - - 0.000000000000000000000000000000000000000000000000000000000000486 217.0
LYD3_k127_3000220_3 3'-5' exonuclease - - - 0.000000000000002946 84.0
LYD3_k127_3013027_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 301.0
LYD3_k127_3013027_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000009065 255.0
LYD3_k127_3013027_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000001103 79.0
LYD3_k127_3027998_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 590.0
LYD3_k127_3027998_1 Alanine dehydrogenase/PNT, C-terminal domain K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 343.0
LYD3_k127_3027998_2 Peptidase family M3 K01284 - 3.4.15.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 333.0
LYD3_k127_3027998_3 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 288.0
LYD3_k127_3047690_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001852 251.0
LYD3_k127_3047690_1 Protein of unknown function (DUF3419) K13622 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002102 248.0
LYD3_k127_3047690_2 Methylase involved in ubiquinone menaquinone biosynthesis K13623 - - 0.000000000000000000000000000000009568 130.0
LYD3_k127_3047690_3 Methyltransferase K13623 - - 0.0000000000000000003501 89.0
LYD3_k127_3047690_4 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000001326 85.0
LYD3_k127_3068363_0 protein kinase activity - - - 0.0000000000000000000000000000002767 137.0
LYD3_k127_3076683_0 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 353.0
LYD3_k127_3076683_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 320.0
LYD3_k127_3076683_2 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000004231 128.0
LYD3_k127_3078863_0 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 382.0
LYD3_k127_3078863_1 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000004762 271.0
LYD3_k127_3078863_2 Response regulator receiver domain protein K07670 GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016310,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044110,GO:0044116,GO:0044117,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000001123 200.0
LYD3_k127_3082971_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 296.0
LYD3_k127_3082971_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000744 173.0
LYD3_k127_3082971_2 - - - - 0.00000000000000000001275 92.0
LYD3_k127_313287_0 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000007421 194.0
LYD3_k127_313287_1 Acetyltransferase (GNAT) domain K18816 - 2.3.1.82 0.0000000006732 61.0
LYD3_k127_313342_0 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.0000000000000000000000000000000000000000000000000000000000000002231 235.0
LYD3_k127_313342_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000007984 162.0
LYD3_k127_313342_2 ATP-independent chaperone mediated protein folding K06006 - - 0.0000000008663 64.0
LYD3_k127_3136435_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 431.0
LYD3_k127_3136435_1 Fungal family of unknown function (DUF1776) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007954 360.0
LYD3_k127_3136435_2 Cyclase dehydrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000009853 236.0
LYD3_k127_3136435_3 COGs COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000524 212.0
LYD3_k127_3161398_0 ABC transporter K01990,K19340 - - 0.0000000000000000000000000000000000000000000000000004504 195.0
LYD3_k127_3161398_1 ABC-2 family transporter protein K01992,K19341 - - 0.0000000000000000000000000000000000000000000000001264 187.0
LYD3_k127_3161398_2 Periplasmic copper-binding protein (NosD) K07218 - - 0.0000000000000000000000000000000000000000009414 164.0
LYD3_k127_3161398_3 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.000000000000000000000000005406 124.0
LYD3_k127_3161398_4 NosL K19342 - - 0.000000000000000149 87.0
LYD3_k127_3161398_5 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000003992 76.0
LYD3_k127_3163175_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006366 553.0
LYD3_k127_3183253_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 4.735e-207 653.0
LYD3_k127_3183253_1 Protein of unknown function (DUF1211) - - - 0.000000000001429 72.0
LYD3_k127_3184691_0 peptidase K07386 - - 3.277e-264 831.0
LYD3_k127_3184691_1 Phage plasmid primase P4 family K06919 - - 0.00000000000000000000000003023 123.0
LYD3_k127_3184691_2 - - - - 0.0000000000000001468 83.0
LYD3_k127_3188895_0 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009209 328.0
LYD3_k127_3188895_1 - - - - 0.000000000000000000000000000000000000000000000009319 177.0
LYD3_k127_3188895_2 histone H4-K16 acetylation K07020 - - 0.0000000000000000000000000000000003042 133.0
LYD3_k127_3188895_3 Uncharacterized conserved protein (DUF2277) - - - 0.00000000000000000000000000000001591 128.0
LYD3_k127_3188895_4 DUF167 K09131 - - 0.00000000000001334 76.0
LYD3_k127_3188895_5 40-residue YVTN family beta-propeller repeat protein - - - 0.000002393 58.0
LYD3_k127_3188895_6 Phosphoesterase family - - - 0.00002852 48.0
LYD3_k127_3189479_0 Response regulator receiver domain - - - 6.699e-208 662.0
LYD3_k127_3189479_1 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 422.0
LYD3_k127_3189479_2 PFAM Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000002144 154.0
LYD3_k127_3204400_0 Tricorn protease C1 domain K08676 - - 5.397e-245 775.0
LYD3_k127_3204400_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000000000000000000000000000000000000000000000000000000001561 238.0
LYD3_k127_3208747_0 Iron-sulfur cluster-binding domain K06871 - - 2.069e-234 732.0
LYD3_k127_3208747_1 Sulfatase K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 549.0
LYD3_k127_3208747_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 371.0
LYD3_k127_3208747_3 - - - - 0.00000000000000000000000000001693 122.0
LYD3_k127_3210614_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 4.82e-256 817.0
LYD3_k127_3229848_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01751,K01754,K06016,K17989 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008838,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575 3.5.1.6,3.5.1.87,4.3.1.15,4.3.1.17,4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 346.0
LYD3_k127_3229848_1 PFAM Type II secretion system protein E K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000332 265.0
LYD3_k127_3245160_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 3.738e-220 692.0
LYD3_k127_3245160_1 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000009838 126.0
LYD3_k127_3247961_0 Anthranilate synthase component I, N terminal region K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001996 274.0
LYD3_k127_3247961_1 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000001497 85.0
LYD3_k127_3247961_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000001157 83.0
LYD3_k127_3257755_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 2.196e-262 831.0
LYD3_k127_3257755_1 Methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 285.0
LYD3_k127_3257755_2 thiolester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000000000000006823 213.0
LYD3_k127_3257755_3 Cys-tRNA(Pro) hydrolase activity K03976 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0043906,GO:0043907,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000309 151.0
LYD3_k127_3257755_4 DinB superfamily - - - 0.000000000000000000000000114 113.0
LYD3_k127_3257755_5 Putative peptidoglycan binding domain - - - 0.00001274 55.0
LYD3_k127_3280163_0 SIS domain K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007497 284.0
LYD3_k127_3280163_1 Protein of unknown function (DUF1343) - - - 0.000000000000000000000000000000000000000002488 159.0
LYD3_k127_3280163_2 BadF/BadG/BcrA/BcrD ATPase family - - - 0.00000000000000000000000000000000003412 147.0
LYD3_k127_3280163_3 Transcriptional regulator - - - 0.0000000000000000000000009709 110.0
LYD3_k127_3292971_0 PFAM Acetyl-CoA hydrolase transferase K01067 - 3.1.2.1 3.516e-195 616.0
LYD3_k127_3292971_1 deaminase K01485 - 3.5.4.1 0.000000000000000000000000000000000000000000000000000000000000000000003948 237.0
LYD3_k127_3292971_2 Proline dehydrogenase K00318 - - 0.00000000000000001839 83.0
LYD3_k127_3292971_3 Belongs to the thiolase family K00626 GO:0003674,GO:0003824,GO:0003985,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 2.3.1.9 0.0000002099 53.0
LYD3_k127_3296013_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000005553 162.0
LYD3_k127_3296013_1 multi-organism process K03195 - - 0.0004549 51.0
LYD3_k127_3313294_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000001399 227.0
LYD3_k127_3313294_1 ABC-type sugar transport system periplasmic component K10439 - - 0.00000000000000000000000000000000000000000000000000000000006322 217.0
LYD3_k127_3313294_2 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000001783 156.0
LYD3_k127_3323049_0 PFAM 2Fe-2S -binding K13481 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 458.0
LYD3_k127_3323049_1 Glutamine cyclotransferase K00683 - 2.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000001295 263.0
LYD3_k127_3323049_2 MafB19-like deaminase K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000009281 236.0
LYD3_k127_3323049_3 Putative inner membrane exporter, YdcZ K09936 - - 0.0000000000000000000000000000000009735 136.0
LYD3_k127_3323049_4 Thioredoxin - - - 0.00000000000000000001395 95.0
LYD3_k127_332313_0 Peptidase, M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 323.0
LYD3_k127_332313_1 Peptidase, M16 - - - 0.0002392 47.0
LYD3_k127_3325238_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 444.0
LYD3_k127_3325238_1 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003194 270.0
LYD3_k127_3326021_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000004521 259.0
LYD3_k127_3326021_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000001817 217.0
LYD3_k127_3326021_2 PFAM conserved K07027 - - 0.00000000000000001315 92.0
LYD3_k127_3347802_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 353.0
LYD3_k127_3347802_1 deaminated base DNA N-glycosylase activity K21929 - 3.2.2.27 0.000000000000000000000000000000002256 136.0
LYD3_k127_3347802_2 Glycine cleavage T-protein C-terminal barrel domain K00605,K06980 - 2.1.2.10 0.0000000000000000000000000000001613 135.0
LYD3_k127_3347802_3 response to heat K03668,K09914 - - 0.000000000008893 74.0
LYD3_k127_3376359_0 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000006595 137.0
LYD3_k127_3376359_1 penicillin binding - - - 0.00000000000000000000000000007466 123.0
LYD3_k127_3376359_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0007833 48.0
LYD3_k127_3384122_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 325.0
LYD3_k127_3384122_1 SpoIVB peptidase S55 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000826 300.0
LYD3_k127_3384122_2 DNA repair exonuclease K03547 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002159 289.0
LYD3_k127_3384122_3 ATP-dependent protease La (LON) substrate-binding domain K01338 - 3.4.21.53 0.0000000000000000000000000000000002351 140.0
LYD3_k127_3384122_4 methyltransferase activity K21310 - 2.1.1.334 0.000000000000009124 75.0
LYD3_k127_3384122_5 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.00000000006079 74.0
LYD3_k127_3388644_0 transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 556.0
LYD3_k127_3388644_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 0.00000000000000000000591 94.0
LYD3_k127_3391692_0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000005773 181.0
LYD3_k127_3391692_1 Thioredoxin-like - - - 0.00000000000000000000000000000000001712 141.0
LYD3_k127_3391692_2 Domain of unknown function (DUF4112) - - - 0.000000000000000000000000000128 123.0
LYD3_k127_3391692_3 Redoxin - - - 0.0000000000001547 70.0
LYD3_k127_3420183_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009404 340.0
LYD3_k127_3420183_1 Protein of unknown function (DUF541) K09797 - - 0.0000000000000000000000000000000000000000000000000000000000000000002201 237.0
LYD3_k127_3428844_0 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009183 410.0
LYD3_k127_3428844_1 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000112 271.0
LYD3_k127_3444458_0 Belongs to the DNA polymerase type-C family. DnaE2 subfamily K14162 - 2.7.7.7 6.998e-293 929.0
LYD3_k127_3444458_1 SOS response associated peptidase (SRAP) - - - 0.000000000000000001656 90.0
LYD3_k127_3454931_0 Cyclomaltodextrinase, N-terminal K21575 - 3.2.1.135 5.24e-206 659.0
LYD3_k127_3454931_1 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000006803 191.0
LYD3_k127_346187_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 569.0
LYD3_k127_346187_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines K01479,K12255 - 3.5.3.7,3.5.3.8 0.0000000000000000000000000000000000000000000000004599 184.0
LYD3_k127_346187_2 cheY-homologous receiver domain K11443 - - 0.000000000000000000004121 98.0
LYD3_k127_3471850_0 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000003019 115.0
LYD3_k127_3488638_0 Glycogen debranching enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 577.0
LYD3_k127_3488638_1 alpha/beta hydrolase fold - - - 0.0000000000001338 74.0
LYD3_k127_3490826_0 PFAM peptidase T2 asparaginase 2 K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 434.0
LYD3_k127_3490826_1 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.000000000000000000000000000000000000000004474 158.0
LYD3_k127_3490826_2 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000465 121.0
LYD3_k127_3516593_0 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 554.0
LYD3_k127_3516593_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 470.0
LYD3_k127_3516593_2 glycogen (starch) synthase activity K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 372.0
LYD3_k127_3519217_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000005044 144.0
LYD3_k127_3519217_1 Tetratricopeptide repeat - - - 0.000000000153 69.0
LYD3_k127_3520498_0 DEAD DEAH box helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004053 250.0
LYD3_k127_3539342_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009365 263.0
LYD3_k127_3539342_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000002647 233.0
LYD3_k127_3539342_2 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000001697 207.0
LYD3_k127_3539342_3 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000002237 186.0
LYD3_k127_3539342_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000003269 88.0
LYD3_k127_3541209_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 293.0
LYD3_k127_3541209_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000002323 105.0
LYD3_k127_3541209_2 Tetratricopeptide repeat - - - 0.0000000000007774 78.0
LYD3_k127_35621_0 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 421.0
LYD3_k127_35621_1 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003635 245.0
LYD3_k127_35621_2 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000001719 126.0
LYD3_k127_3568173_0 Transcriptional regulator K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000004697 243.0
LYD3_k127_3573926_0 pfam abc K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 294.0
LYD3_k127_3573926_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000733 238.0
LYD3_k127_357482_0 elongator protein 3 miab nifb - - - 1.067e-228 717.0
LYD3_k127_357482_1 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 377.0
LYD3_k127_357482_2 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000005298 261.0
LYD3_k127_357482_3 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000001673 183.0
LYD3_k127_357482_4 RNA recognition motif - - - 0.000000000000000000000000000000000001199 141.0
LYD3_k127_357482_5 Rieske [2Fe-2S] domain - - - 0.00008456 46.0
LYD3_k127_3578252_0 sequence-specific DNA binding K01697,K01738 GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008144,GO:0016020,GO:0019842,GO:0030170,GO:0030312,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0071944,GO:0097159,GO:1901363 2.5.1.47,4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 396.0
LYD3_k127_3578252_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000002101 59.0
LYD3_k127_3578252_2 Helix-turn-helix domain - - - 0.00000005125 57.0
LYD3_k127_3578252_3 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.00000234 50.0
LYD3_k127_3586611_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 2.003e-306 967.0
LYD3_k127_3586611_1 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000001737 108.0
LYD3_k127_3586611_2 alcohol dehydrogenase - - - 0.0000000000000000000000006103 106.0
LYD3_k127_3586611_3 - - - - 0.00000000000000000000003718 104.0
LYD3_k127_3586611_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000005076 51.0
LYD3_k127_3592337_0 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 293.0
LYD3_k127_3592337_1 3'(2'),5'-bisphosphate nucleotidase activity K01082 - 3.1.3.7 0.00000000000000000000000000000000000000000000000000000000149 209.0
LYD3_k127_3593886_0 Protein of unknown function, DUF255 K06888 - - 4.391e-208 660.0
LYD3_k127_3593886_1 peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 567.0
LYD3_k127_3612021_0 Molydopterin dinucleotide binding domain K00123,K05299 - 1.17.1.10,1.17.1.9 2.444e-238 750.0
LYD3_k127_3612021_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005827 569.0
LYD3_k127_3612021_2 COG0076 Glutamate decarboxylase and related PLP-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 360.0
LYD3_k127_3621150_0 metal ion transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 390.0
LYD3_k127_3621150_1 Phosphoenolpyruvate phosphomutase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 309.0
LYD3_k127_3621150_2 PFAM Phosphate acetyl butaryl transferase K00625 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.8 0.000000000000000000000000000000000000000008458 155.0
LYD3_k127_3621852_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 GO:0000041,GO:0003674,GO:0005215,GO:0005375,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006878,GO:0006950,GO:0008150,GO:0008324,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0010272,GO:0010273,GO:0015075,GO:0015080,GO:0015318,GO:0015673,GO:0015679,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0034220,GO:0035434,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0044425,GO:0044464,GO:0046688,GO:0046872,GO:0046873,GO:0046914,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060003,GO:0061687,GO:0065007,GO:0065008,GO:0071944,GO:0097501,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:1902601,GO:1990169 - 0.0 1172.0
LYD3_k127_3621852_1 Domain of unknown function (DUF305) - - - 0.000000000000000000000000000000000000001954 154.0
LYD3_k127_3621852_2 outer membrane efflux protein K15725 - - 0.000008405 57.0
LYD3_k127_3643828_0 Uncharacterised protein family UPF0066 - - - 0.000000000000000000000000000000000000000000000000000000000000009016 218.0
LYD3_k127_3643828_1 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000113 156.0
LYD3_k127_3643828_2 Protein of unknown function (DUF4065) - - - 0.0000000000000000001091 93.0
LYD3_k127_3643828_3 Transcriptional regulator, Crp Fnr family K21563 - - 0.00004802 47.0
LYD3_k127_3644400_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 415.0
LYD3_k127_3644400_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 346.0
LYD3_k127_3644400_2 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000002471 198.0
LYD3_k127_3644400_3 Oxidoreductase family, NAD-binding Rossmann fold K09949 - - 0.00000000000000000000000000000000000001937 149.0
LYD3_k127_3653536_0 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 306.0
LYD3_k127_3653536_1 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002377 256.0
LYD3_k127_3653536_2 PFAM DinB - - - 0.0000000000000000000000000000000000000000000007585 170.0
LYD3_k127_3653536_3 DinB family - - - 0.0000000000000000000000000000000000000000000008478 171.0
LYD3_k127_3653536_4 - - - - 0.00000000000000000000003485 109.0
LYD3_k127_3656850_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000001221 212.0
LYD3_k127_3656850_1 Calcineurin-like phosphoesterase - - - 0.00000000000000000006367 93.0
LYD3_k127_3656850_2 - - - - 0.000000000000000007843 91.0
LYD3_k127_3659391_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 2.099e-278 871.0
LYD3_k127_3659391_1 polyketide synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000002645 250.0
LYD3_k127_3659391_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000002676 171.0
LYD3_k127_3659391_3 Thiolase, C-terminal domain K07508 - 2.3.1.16 0.00000000000000000004769 92.0
LYD3_k127_3660167_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.043e-199 653.0
LYD3_k127_3660167_1 Tetratricopeptide repeat - - - 0.000000000000000001126 98.0
LYD3_k127_3672187_0 membrane - - - 0.00000000000000000000000000000000000003381 153.0
LYD3_k127_3672187_1 - - - - 0.00000000000002091 82.0
LYD3_k127_3672187_2 Peptidase S46 - - - 0.000006201 51.0
LYD3_k127_3683257_0 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 332.0
LYD3_k127_3683257_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000002038 176.0
LYD3_k127_3698466_0 Male sterility protein K01897 - 6.2.1.3 0.0 1060.0
LYD3_k127_3698466_1 Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002429 249.0
LYD3_k127_3698596_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.0000000000000000000000000000000000000000000000000001351 191.0
LYD3_k127_3698596_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000001948 123.0
LYD3_k127_3698596_2 - - - - 0.0000000000000001892 90.0
LYD3_k127_3698596_3 Belongs to the UPF0502 family K09915 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000001415 57.0
LYD3_k127_3700719_0 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 430.0
LYD3_k127_3700719_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007948 280.0
LYD3_k127_3700719_2 EVE domain - - - 0.0000000000000000000000000000000000000000000000002887 178.0
LYD3_k127_3700719_3 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000002898 182.0
LYD3_k127_3703434_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 3.498e-266 846.0
LYD3_k127_3703434_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000003118 204.0
LYD3_k127_3703434_2 DinB superfamily - - - 0.00000000000000000002925 91.0
LYD3_k127_3703434_3 HEAT repeat - - - 0.0000000002324 72.0
LYD3_k127_3711769_0 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000001458 239.0
LYD3_k127_3711769_1 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000008204 141.0
LYD3_k127_3711769_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000002181 121.0
LYD3_k127_371642_0 Amidohydrolase family K06015 - 3.5.1.81 5.761e-250 781.0
LYD3_k127_371642_1 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000000005414 102.0
LYD3_k127_371642_2 Beta-lactamase - - - 0.000000009758 59.0
LYD3_k127_371681_0 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000005186 196.0
LYD3_k127_371681_1 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.000000000000000000000000000000000000000000000000009188 194.0
LYD3_k127_371681_2 Protein of unknown function (DUF3108) - - - 0.00000000001109 75.0
LYD3_k127_371681_3 Domain of unknown function (DUF4912) K09942 - - 0.000002163 59.0
LYD3_k127_371681_4 6-phosphogluconolactonase activity - - - 0.000003509 59.0
LYD3_k127_371681_5 PFAM Fimbrial assembly family protein K02663 - - 0.000008845 55.0
LYD3_k127_371681_6 general secretion pathway protein - - - 0.0006045 51.0
LYD3_k127_3725116_0 PFAM peptidase T2 asparaginase 2 K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 393.0
LYD3_k127_3725116_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005448 374.0
LYD3_k127_3725116_2 Belongs to the CinA family K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000003671 256.0
LYD3_k127_3725116_3 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000005341 225.0
LYD3_k127_3744009_0 oxidoreductase activity, acting on CH-OH group of donors K13237 - 1.3.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000785 274.0
LYD3_k127_3744009_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000001179 216.0
LYD3_k127_3744009_2 nucleotide metabolic process - - - 0.000000000000000000000000000000000000000000000235 176.0
LYD3_k127_3757087_0 Sulfatase-modifying factor enzyme 1 K20333 - - 0.0000000000000000000000000000000000000000004105 175.0
LYD3_k127_3757087_1 sigma factor antagonist activity K04757 - 2.7.11.1 0.000000000000142 83.0
LYD3_k127_3757087_2 Serine threonine protein kinase - - - 0.00000006296 64.0
LYD3_k127_3765874_0 PFAM magnesium chelatase K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 557.0
LYD3_k127_3765874_1 glutamyl-tRNA reductase activity K02407,K02492 GO:0005575,GO:0005623,GO:0009288,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0055040 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000005314 244.0
LYD3_k127_3765874_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000001173 186.0
LYD3_k127_3765874_3 - - - - 0.0000000000454 72.0
LYD3_k127_3765874_4 Putative adhesin - - - 0.000001398 59.0
LYD3_k127_3765874_5 Putative zinc-finger K03088 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0001518 52.0
LYD3_k127_3767025_0 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 384.0
LYD3_k127_3767025_1 Cytochrome c7 and related cytochrome c - - - 0.00000008729 63.0
LYD3_k127_3772906_0 Cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001307 252.0
LYD3_k127_3772906_1 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.000000000000000000000001511 109.0
LYD3_k127_3772906_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000005077 73.0
LYD3_k127_3774316_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 424.0
LYD3_k127_3774316_1 MaoC domain protein dehydratase K00634,K17865 - 2.3.1.19,4.2.1.55 0.0000000000000000000000000000000001174 142.0
LYD3_k127_3787314_0 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000005721 79.0
LYD3_k127_3787314_1 Pilus assembly protein PilX K02673 - - 0.000000000533 64.0
LYD3_k127_3800640_0 glutamate decarboxylase activity K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 572.0
LYD3_k127_3800640_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 292.0
LYD3_k127_3800640_2 Domain of unknown function (DUF4932) - - - 0.0000000000000000000000000000003686 128.0
LYD3_k127_3800640_3 PFAM Polyketide cyclase dehydrase and lipid transport - - - 0.000000000000000000000001849 109.0
LYD3_k127_3801673_0 NDK K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.000000000000000000000000000000000000000000000000006874 183.0
LYD3_k127_3801673_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000008695 176.0
LYD3_k127_3801673_2 Acyl-ACP thioesterase K07107 - - 0.00000000000000000000000000000000003952 138.0
LYD3_k127_3801673_3 Zn peptidase K21686 - - 0.000000000000000000000000023 115.0
LYD3_k127_3801673_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000006596 87.0
LYD3_k127_3801673_5 - - - - 0.000001259 60.0
LYD3_k127_38106_0 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046 416.0
LYD3_k127_38106_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 318.0
LYD3_k127_38106_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000008193 274.0
LYD3_k127_3812006_0 Uncharacterised protein family (UPF0182) K09118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000692 533.0
LYD3_k127_3815141_0 TIGRFAM MazG family protein K02428,K02499,K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66,3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000001035 249.0
LYD3_k127_3815141_1 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000002723 246.0
LYD3_k127_3815141_2 Domain of unknown function (DUF1844) - - - 0.0000000000005191 76.0
LYD3_k127_3835937_0 RNA polymerase sigma factor K03088 - - 0.000000000000000000007853 98.0
LYD3_k127_3835937_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000003782 68.0
LYD3_k127_3839325_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 441.0
LYD3_k127_3839325_1 Putative metallopeptidase - - - 0.000000000000000000000000000000000000000000005056 174.0
LYD3_k127_3839325_2 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000001509 166.0
LYD3_k127_3839325_3 Isochorismatase family - - - 0.0000000000000000000000000000000000000000004121 164.0
LYD3_k127_3839325_4 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000000006712 134.0
LYD3_k127_3839325_5 - - - - 0.000000000002626 75.0
LYD3_k127_3839325_6 Tetratricopeptide repeat - - - 0.0000005438 57.0
LYD3_k127_3846603_0 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000009243 206.0
LYD3_k127_3846603_1 Domain of unknown function (DUF2383) - - - 0.000000000000000000000000000000000000000000115 165.0
LYD3_k127_3847949_0 TPR Domain containing protein K12600 - - 0.0000000000000000000000000000001359 140.0
LYD3_k127_3847949_1 Domain of unknown function (DUF4349) - - - 0.0003379 51.0
LYD3_k127_3847949_2 Sigma-70, region 4 K03088 GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0009522 42.0
LYD3_k127_3878956_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008024 493.0
LYD3_k127_3878956_1 Exopeptidase that catalyzes the hydrolytic cleavage of multi-L-arginyl-poly-L-aspartic acid (cyanophycin K13282 - 3.4.15.6 0.0000000000000000000000000000000000000000000000000000000000000000007571 237.0
LYD3_k127_3878956_2 Belongs to the MurCDEF family K03802 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000000000004432 162.0
LYD3_k127_3878956_3 Phosphotransferase enzyme family K17880 - 2.7.1.119 0.0000000000000000000000000003989 125.0
LYD3_k127_3881529_0 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003688 268.0
LYD3_k127_3881529_1 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000001347 149.0
LYD3_k127_3881529_2 Tyrosine recombinase XerC K04763 - - 0.00000006543 57.0
LYD3_k127_3898809_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008618 532.0
LYD3_k127_3898809_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 353.0
LYD3_k127_3898809_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.00000000000000000000000000000000000003664 162.0
LYD3_k127_3898809_3 Outer membrane efflux protein - - - 0.00007821 53.0
LYD3_k127_3899329_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 456.0
LYD3_k127_3899329_1 Cupredoxin-like domain K00376 - 1.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000003608 249.0
LYD3_k127_3899329_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.000000000000000000000000000000000000000000000000003724 183.0
LYD3_k127_390025_0 IstB-like ATP binding protein K02315 - - 0.00000000000000000000000000000000000000000000000000000000000001362 224.0
LYD3_k127_390025_1 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.000000000000000000000000000000000000000000000000000000001001 205.0
LYD3_k127_390025_2 N-terminal domain of Peptidase_S41 in eukaryotic IRBP - - - 0.00000000000000000000000000002342 119.0
LYD3_k127_3911084_0 Penicillin-binding Protein K05364 - - 0.0000000000000000000000000000000000000001436 171.0
LYD3_k127_3911084_1 Belongs to the SEDS family K03588 GO:0002682,GO:0002684,GO:0008150,GO:0009605,GO:0009607,GO:0009987,GO:0035821,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051301,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0075136 - 0.0000000000000000000000000000000000001799 160.0
LYD3_k127_3926546_0 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide - - - 1.627e-284 895.0
LYD3_k127_3926546_1 Amidohydrolase family K06015 - 3.5.1.81 1.156e-216 686.0
LYD3_k127_3926546_2 carboxylic acid catabolic process - - - 0.00000000000000000000000000000000000000000000000004449 188.0
LYD3_k127_3926546_3 Transcriptional regulator, RpiR family - - - 0.000000000000004701 86.0
LYD3_k127_3926546_4 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000002538 68.0
LYD3_k127_3926546_5 PFAM TonB-dependent Receptor Plug - - - 0.00000009747 57.0
LYD3_k127_3926546_6 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.00005458 49.0
LYD3_k127_3930540_0 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000001231 219.0
LYD3_k127_3930540_1 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000000000000000000000002402 205.0
LYD3_k127_3930540_2 BMC - - - 0.0000000000000000000000000000000003396 132.0
LYD3_k127_3930540_3 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028,K08697 - - 0.000000000000000000000000000001248 123.0
LYD3_k127_3930540_4 ethanolamine utilization protein EutN carboxysome structural protein Ccml K04028 - - 0.0000000000000000000007009 98.0
LYD3_k127_3930540_5 protein conserved in bacteria K09924 - - 0.0000000000000002012 87.0
LYD3_k127_3930540_6 Ethanolamine utilisation protein EutN/carboxysome K04028 - - 0.00003616 50.0
LYD3_k127_3947654_0 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001833 264.0
LYD3_k127_3947654_1 Domain of unknown function DUF302 - - - 0.000000000000000000000000000000007901 132.0
LYD3_k127_3947654_2 SMART Rhodanese domain protein - - - 0.000000000000000001159 91.0
LYD3_k127_3947654_3 Rhodanese Homology Domain - - - 0.00003153 47.0
LYD3_k127_3954091_0 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006963 293.0
LYD3_k127_3954091_1 glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.0000000000000000000000000000000000000000000000000000000000002427 214.0
LYD3_k127_3955896_0 Beta-lactamase superfamily domain K06136 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 351.0
LYD3_k127_3955896_1 FtsJ-like methyltransferase K06442 GO:0000154,GO:0001510,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019835,GO:0019836,GO:0022613,GO:0031167,GO:0031640,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0035821,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044003,GO:0044004,GO:0044085,GO:0044179,GO:0044237,GO:0044238,GO:0044260,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046483,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000006558 229.0
LYD3_k127_3955896_2 cytochrome oxidase assembly K02259 - - 0.00000000000000000000000000000000000000000000000000003405 196.0
LYD3_k127_3967206_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000000008603 128.0
LYD3_k127_3967206_1 LVIVD repeat - - - 0.000002018 61.0
LYD3_k127_3968792_0 TIGRFAM carbamoyl-phosphate synthase, large subunit K01955 - 6.3.5.5 1.645e-293 914.0
LYD3_k127_3971087_0 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 584.0
LYD3_k127_3971087_1 TIGRFAM methylmalonate-semialdehyde dehydrogenase K00140,K22187 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 437.0
LYD3_k127_3971087_2 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007877 275.0
LYD3_k127_397223_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 566.0
LYD3_k127_397223_1 peptidase S9B dipeptidylpeptidase IV domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 397.0
LYD3_k127_397223_2 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000003021 130.0
LYD3_k127_3999303_0 Glycosyl hydrolase-like 10 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005475 342.0
LYD3_k127_3999303_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 295.0
LYD3_k127_4019379_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 417.0
LYD3_k127_4019728_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 329.0
LYD3_k127_4019728_1 Protein of unknown function (DUF1009) K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006846 299.0
LYD3_k127_4019728_2 Ferritin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003297 248.0
LYD3_k127_4019728_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000003388 181.0
LYD3_k127_4019728_4 aminopeptidase activity - - - 0.000000000000000000000000000000000106 142.0
LYD3_k127_4024314_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000004994 203.0
LYD3_k127_4024314_1 Protease prsW family - - - 0.0000000000000000000000000000000187 138.0
LYD3_k127_4028005_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 386.0
LYD3_k127_4028005_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000005129 131.0
LYD3_k127_4033642_0 TIGRFAM VWFA-related Acidobacterial domain - - - 0.0000000000000000000000000000000000000002018 165.0
LYD3_k127_4033642_1 von Willebrand factor, type A K07114,K12511 - - 0.000000000000000000242 98.0
LYD3_k127_4073412_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 356.0
LYD3_k127_4073412_1 energy transducer activity K03832 - - 0.00001587 56.0
LYD3_k127_4086321_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 352.0
LYD3_k127_4086321_1 Predicted integral membrane protein (DUF2270) - - - 0.000000000000000000000000000000000000000000000000000000000008968 217.0
LYD3_k127_4086321_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000007315 175.0
LYD3_k127_4086321_3 LemA family K03744 - - 0.0000000000000000000000000000000000000001133 159.0
LYD3_k127_4086321_4 nucleotidyltransferase activity - - - 0.00000000000000000000000000000000000005538 151.0
LYD3_k127_4086321_5 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.000000000000000000000000003466 122.0
LYD3_k127_4086321_6 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000001771 49.0
LYD3_k127_409865_0 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000391 256.0
LYD3_k127_409865_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000057 119.0
LYD3_k127_409865_2 Voltage gated chloride channel - - - 0.000000000000000000000000004672 113.0
LYD3_k127_4135813_0 Stage II sporulation protein K06381 - - 0.00000000000000000000000000002241 133.0
LYD3_k127_4138151_0 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000001354 239.0
LYD3_k127_4138151_1 - - - - 0.0000000000000000000000000000000000000000000000000000001203 203.0
LYD3_k127_4138151_2 - - - - 0.000000000000000000000000000001627 126.0
LYD3_k127_416889_0 CarboxypepD_reg-like domain - - - 1.892e-235 757.0
LYD3_k127_416889_1 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 421.0
LYD3_k127_4179209_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 2.719e-288 903.0
LYD3_k127_4179209_1 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000005255 209.0
LYD3_k127_4204338_0 Actin K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000001706 248.0
LYD3_k127_4204338_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000008397 189.0
LYD3_k127_4225490_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000003856 240.0
LYD3_k127_4225490_1 Catalyzes the transamination of the aromatic amino acid forming a ketoacid K00832,K00841 - 2.6.1.57 0.00000000000000000000000000209 117.0
LYD3_k127_4225490_2 Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.00000000001711 66.0
LYD3_k127_4228543_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005986 282.0
LYD3_k127_4240202_0 PFAM peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008336 281.0
LYD3_k127_4240202_1 Tetratricopeptide repeat - - - 0.0000000000002778 72.0
LYD3_k127_4241724_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 9.477e-194 625.0
LYD3_k127_4261559_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 501.0
LYD3_k127_4261559_1 Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 322.0
LYD3_k127_4261559_2 Thiolase, C-terminal domain K07508 - 2.3.1.16 0.000000000000000000000000000000000000006225 146.0
LYD3_k127_426257_0 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000007434 243.0
LYD3_k127_426257_1 Abhydrolase domain containing 18 - - - 0.0000000000007676 70.0
LYD3_k127_426257_2 DNA-templated transcription, initiation K03088 - - 0.00000000005688 68.0
LYD3_k127_4274927_0 Arginase family K01476 - 3.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001835 282.0
LYD3_k127_4274927_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000001613 269.0
LYD3_k127_4274927_2 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000001571 235.0
LYD3_k127_4274927_3 PTS system fructose IIA component K02793,K02794,K02821 - 2.7.1.191,2.7.1.194 0.000000000000000000000000000000001024 134.0
LYD3_k127_4274927_4 TIGRFAM phosphocarrier, HPr family K11189 - - 0.000000000000006194 77.0
LYD3_k127_4285016_0 Extradiol ring-cleavage dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 382.0
LYD3_k127_4285016_1 NADPH-dependent FMN reductase K19784 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001221 260.0
LYD3_k127_4285016_2 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000002002 220.0
LYD3_k127_4285016_3 belongs to the aldehyde dehydrogenase family K22445 - 1.2.99.10 0.0000000000000000000000000000000004082 136.0
LYD3_k127_4285016_4 - - - - 0.00000000000001117 81.0
LYD3_k127_4311652_0 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000168 280.0
LYD3_k127_4311652_1 - - - - 0.0000000000000000000000000000000000000000001609 166.0
LYD3_k127_4311652_2 VKc - - - 0.000000000005034 73.0
LYD3_k127_433301_0 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000005646 268.0
LYD3_k127_433301_1 Superoxide dismutase K00518 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000246 226.0
LYD3_k127_433301_2 hydrolase of the alpha beta K07018 - - 0.00000000000000000000000000000000000000001775 160.0
LYD3_k127_433301_3 PFAM Uncharacterised protein family UPF0118 - - - 0.000000000000000000000000000000006637 142.0
LYD3_k127_433301_4 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000008238 128.0
LYD3_k127_433301_5 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000001403 122.0
LYD3_k127_433301_6 Thioesterase superfamily protein K10806 - - 0.000000000000000000000000000133 119.0
LYD3_k127_433301_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000001858 104.0
LYD3_k127_433301_8 peptidase - - - 0.0000000000000000005062 92.0
LYD3_k127_4342075_0 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 615.0
LYD3_k127_4342075_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102,K11103 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 325.0
LYD3_k127_4342075_2 PFAM Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000004043 229.0
LYD3_k127_4342075_3 - - - - 0.000000000000000000000000000000000000000000001289 182.0
LYD3_k127_4347838_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 306.0
LYD3_k127_4347838_1 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000002448 213.0
LYD3_k127_4347838_2 - - - - 0.0000000000000000000000000000000000000000000000000000001707 203.0
LYD3_k127_4347838_3 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00006735 46.0
LYD3_k127_4347838_4 ABC-2 family transporter protein K01992 - - 0.0001924 46.0
LYD3_k127_4356496_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 496.0
LYD3_k127_4356496_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 370.0
LYD3_k127_4356496_2 receptor - - - 0.0001723 54.0
LYD3_k127_4356496_3 Carboxypeptidase regulatory-like domain - - - 0.0003002 53.0
LYD3_k127_435801_0 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 597.0
LYD3_k127_435801_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 368.0
LYD3_k127_435801_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000003893 149.0
LYD3_k127_4385754_0 PFAM FAD linked oxidase domain protein K00102 - 1.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000008348 269.0
LYD3_k127_4385754_1 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K01838 - 5.4.2.6 0.00000000000000000000000000000000001578 144.0
LYD3_k127_4386719_0 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002567 279.0
LYD3_k127_4386719_1 Thioredoxin-like - - - 0.000000000000000000000002097 107.0
LYD3_k127_4386719_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000001164 107.0
LYD3_k127_4386719_3 - - - - 0.00000000000000003717 93.0
LYD3_k127_4389493_0 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000003794 218.0
LYD3_k127_4396546_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 7.491e-216 689.0
LYD3_k127_4396546_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000008143 96.0
LYD3_k127_4396546_2 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000003247 70.0
LYD3_k127_4399745_0 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000008793 189.0
LYD3_k127_4399745_1 tigr00255 - - - 0.00000000000000000000000000000000000000000002215 170.0
LYD3_k127_4399745_2 general stress protein - - - 0.00000000000000008932 83.0
LYD3_k127_4399745_3 - - - - 0.00001745 50.0
LYD3_k127_4407640_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009891 421.0
LYD3_k127_4407640_1 Tetratricopeptide repeats - - - 0.0001524 52.0
LYD3_k127_4407955_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 603.0
LYD3_k127_4407955_1 PFAM secretion protein HlyD family protein K01993,K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 359.0
LYD3_k127_4421818_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004629 250.0
LYD3_k127_4421818_1 Belongs to the BshC family K22136 - - 0.00000000000000000000000000000000000000000000113 177.0
LYD3_k127_4453502_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.609e-207 652.0
LYD3_k127_4453502_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000003755 158.0
LYD3_k127_4462623_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009152 598.0
LYD3_k127_4477105_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 1.331e-269 849.0
LYD3_k127_4477105_1 PFAM peptidase T2 asparaginase 2 K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 366.0
LYD3_k127_4477105_2 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002178 256.0
LYD3_k127_4477105_3 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000001282 239.0
LYD3_k127_4482404_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000008538 240.0
LYD3_k127_4482404_1 DEAD DEAH box helicase - - - 0.00000000000000000000000000000000000000000000004395 188.0
LYD3_k127_4482404_2 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) - - - 0.00000000001283 74.0
LYD3_k127_4494007_0 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 454.0
LYD3_k127_4494007_1 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 420.0
LYD3_k127_4494007_2 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000005269 216.0
LYD3_k127_4494007_3 Zinc-binding dehydrogenase K07538 - 1.1.1.368 0.00000000000000000008103 91.0
LYD3_k127_4494007_4 Transcriptional regulator - - - 0.0000000000000000557 89.0
LYD3_k127_4505375_0 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000003432 153.0
LYD3_k127_4505375_1 Domain of unknown function (DUF4870) K09940 - - 0.0000000000000000000000000000000005312 134.0
LYD3_k127_4505375_2 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000005674 113.0
LYD3_k127_4505375_3 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000008156 98.0
LYD3_k127_4505375_4 general secretion pathway protein D K02453 - - 0.000000000000004539 87.0
LYD3_k127_4505375_5 Pilus assembly protein K02662 - - 0.0000001791 62.0
LYD3_k127_4505375_6 Domain of unknown function (DUF4349) - - - 0.0002847 51.0
LYD3_k127_4512307_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 7.626e-295 925.0
LYD3_k127_4512307_1 - - - - 0.00000000000000000000000000000001147 130.0
LYD3_k127_4512307_2 - - - - 0.000000000000000000000000000000501 127.0
LYD3_k127_4512307_3 Carboxypeptidase regulatory-like domain K14475 - - 0.0001543 52.0
LYD3_k127_4564330_0 Domain of unknown function (DUF3471) K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 537.0
LYD3_k127_4564330_1 D-aminopeptidase K16203 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 310.0
LYD3_k127_4564330_2 Beta-lactamase - - - 0.00000003367 59.0
LYD3_k127_4582274_0 AcrB/AcrD/AcrF family K03296 - - 3.8e-322 1019.0
LYD3_k127_4582274_1 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 417.0
LYD3_k127_4582274_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 306.0
LYD3_k127_4582274_3 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000034 116.0
LYD3_k127_4582274_5 Thioredoxin reductase K00384 - 1.8.1.9 0.0000000002886 63.0
LYD3_k127_4593533_0 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 350.0
LYD3_k127_4593533_1 Polymer-forming cytoskeletal - - - 0.00000000001018 74.0
LYD3_k127_4596803_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000002754 209.0
LYD3_k127_4596803_1 Thioredoxin reductase K00384 - 1.8.1.9 0.000000009164 60.0
LYD3_k127_4602788_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002393 287.0
LYD3_k127_4602788_1 Mo-molybdopterin cofactor biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003116 262.0
LYD3_k127_4602788_2 Regulates arginine biosynthesis genes K03402 - - 0.00000000000000000005551 95.0
LYD3_k127_4602788_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.00000000000000001918 85.0
LYD3_k127_4622665_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702,K08999 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009380,GO:0009628,GO:0032991,GO:0042802,GO:0044424,GO:0044464,GO:0050896,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001179 351.0
LYD3_k127_4622665_1 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 327.0
LYD3_k127_4622665_2 FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.0006341 44.0
LYD3_k127_4642416_0 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 392.0
LYD3_k127_4642416_1 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000714 297.0
LYD3_k127_4642416_2 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000005874 85.0
LYD3_k127_465250_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 289.0
LYD3_k127_465250_1 Disulphide isomerase - - - 0.000000000000000000000000000000000000000001143 160.0
LYD3_k127_465250_2 PFAM Adenylate cyclase K05873 - 4.6.1.1 0.000000000000008843 80.0
LYD3_k127_4658985_0 Phosphodiester glycosidase - - - 0.00000000000000000000000000000000000000000004763 177.0
LYD3_k127_4658985_1 - - - - 0.00000000000000881 77.0
LYD3_k127_4659803_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001151 248.0
LYD3_k127_4659803_1 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000001875 118.0
LYD3_k127_4659803_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000004217 105.0
LYD3_k127_4676379_0 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 365.0
LYD3_k127_4676379_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000005331 143.0
LYD3_k127_4676379_2 helix_turn_helix ASNC type - - - 0.00000000000001863 74.0
LYD3_k127_4676379_3 - - - - 0.00000000000002126 81.0
LYD3_k127_4681194_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004553 413.0
LYD3_k127_4681194_1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K02446 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 317.0
LYD3_k127_4690000_0 MatE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 503.0
LYD3_k127_4690000_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 417.0
LYD3_k127_4690000_2 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000001145 216.0
LYD3_k127_4690000_3 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000001186 183.0
LYD3_k127_4690000_4 DinB family - - - 0.00000000000000000001438 93.0
LYD3_k127_4700542_0 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 431.0
LYD3_k127_4700542_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000006406 138.0
LYD3_k127_4700542_2 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000000000000001313 133.0
LYD3_k127_4700542_3 PFAM Uncharacterised protein family UPF0150 - - - 0.00000000000000000000000001563 109.0
LYD3_k127_4714510_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 GO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.11 0.0000000000000000000000000000000000000000000000000000004426 194.0
LYD3_k127_4714510_2 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00000000000000000000000000001092 121.0
LYD3_k127_4714510_3 PFAM SpoVT AbrB like domain K07172 - - 0.0000000000000000001475 90.0
LYD3_k127_4714510_5 Protein of unknown function (DUF3618) - - - 0.000000000002706 78.0
LYD3_k127_4714510_6 Belongs to the ompA family - - - 0.00002899 55.0
LYD3_k127_4728172_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 308.0
LYD3_k127_4728172_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000001301 147.0
LYD3_k127_4728172_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0008152,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0016491,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042802,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0055114,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000003407 59.0
LYD3_k127_4739612_0 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.0000000000000000000000000000000000000000000000000044 189.0
LYD3_k127_4739612_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor - - - 0.0000000000000000004738 100.0
LYD3_k127_4748635_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 5.059e-277 865.0
LYD3_k127_4748635_1 Nucleotidyl transferase K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 348.0
LYD3_k127_4748635_2 YwiC-like protein - - - 0.00000000000002243 78.0
LYD3_k127_4763325_0 Copper binding periplasmic protein CusF K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000427 245.0
LYD3_k127_4763325_1 transglycosylase K08309 - - 0.00000000000000000000000000002432 133.0
LYD3_k127_4763325_2 Cupin domain - - - 0.000000000000000000000473 96.0
LYD3_k127_4796629_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 349.0
LYD3_k127_4796629_1 Enoyl-CoA hydratase K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001563 276.0
LYD3_k127_479746_0 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 535.0
LYD3_k127_4801941_0 Belongs to the ClpA ClpB family K03694 - - 7.864e-287 898.0
LYD3_k127_4801941_1 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 332.0
LYD3_k127_4801941_2 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 308.0
LYD3_k127_4801941_3 PFAM O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000001581 242.0
LYD3_k127_4801941_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K02479 - - 0.0000000000000000000000000000000000000000000003027 174.0
LYD3_k127_4801941_5 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.000000004619 57.0
LYD3_k127_4805813_0 Carboxypeptidase regulatory-like domain - - - 5.631e-224 724.0
LYD3_k127_4811694_0 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 391.0
LYD3_k127_4811694_1 Transcriptional regulator - - - 0.0000000000004451 78.0
LYD3_k127_4811694_2 tail specific protease - - - 0.0000002631 55.0
LYD3_k127_482096_0 Peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 430.0
LYD3_k127_482096_1 pilus organization - - - 0.000000000000000002432 91.0
LYD3_k127_482308_0 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 349.0
LYD3_k127_482308_1 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000007359 104.0
LYD3_k127_482308_2 MobA-like NTP transferase domain K07141,K19190 - 1.1.1.328,2.7.7.76 0.000000000001919 70.0
LYD3_k127_4833901_0 PFAM Sodium Bile acid symporter family K03325 - - 0.000000000000000000000000000000000000000000000000000006958 192.0
LYD3_k127_4833901_1 Scaffold protein Nfu NifU - - - 0.0000000000000000000000000000000000000000000000008364 181.0
LYD3_k127_4833901_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.0000000000000000000000000000000000000138 150.0
LYD3_k127_4833901_3 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000000000004049 143.0
LYD3_k127_4833901_4 nuclear chromosome segregation - - - 0.0000000000002168 83.0
LYD3_k127_4833901_5 SnoaL-like domain - - - 0.000001052 57.0
LYD3_k127_4854144_0 pfkB family carbohydrate kinase K18478 - 2.7.1.184 0.00000000000000000000000000000000000000000000000000000000003486 217.0
LYD3_k127_4854144_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000009714 153.0
LYD3_k127_4854144_2 - K05826 - - 0.00000003595 56.0
LYD3_k127_4857781_0 ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000000000001141 218.0
LYD3_k127_4857781_1 ABC 3 transport family K09819,K11606,K11708,K11709 - - 0.00000000000000000000000000000000000000000007555 168.0
LYD3_k127_4857781_2 PFAM ROK family - - - 0.000000000000000000000000000000000000000001087 167.0
LYD3_k127_4862660_0 Belongs to the NadC ModD family K00767 GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034213,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000003346 248.0
LYD3_k127_4862660_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000004791 176.0
LYD3_k127_4863904_0 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000000000000000000000004486 220.0
LYD3_k127_4863904_1 Phosphoribosyl transferase domain K00762 - 2.4.2.10 0.00000000000000000000000000000000000006516 149.0
LYD3_k127_4868468_0 ABC-type multidrug transport system ATPase component - - - 0.00000000000000000000000000000000004389 151.0
LYD3_k127_487177_0 protease with the C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 513.0
LYD3_k127_487177_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000001113 143.0
LYD3_k127_4882923_0 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000005819 215.0
LYD3_k127_4882923_1 Uncharacterized conserved protein (DUF2203) - - - 0.000000000001283 73.0
LYD3_k127_4885915_0 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006515 287.0
LYD3_k127_4885915_1 cation diffusion facilitator family transporter K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000004144 252.0
LYD3_k127_4885915_2 PFAM FecR protein - - - 0.0000000000000000000000000001409 129.0
LYD3_k127_4902385_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 431.0
LYD3_k127_4902385_1 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000001573 215.0
LYD3_k127_4902385_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000002214 197.0
LYD3_k127_4902385_3 galactose-6-phosphate isomerase activity K00761,K01808 - 2.4.2.9,5.3.1.6 0.00000000000000000000000000000000000009179 152.0
LYD3_k127_4902385_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000003389 131.0
LYD3_k127_4902385_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000004912 104.0
LYD3_k127_4902385_6 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000002255 84.0
LYD3_k127_4935272_0 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 9.426e-217 692.0
LYD3_k127_4935272_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07640 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 308.0
LYD3_k127_4935272_2 Phosphate acyltransferases K00655,K01897 - 2.3.1.51,6.2.1.3 0.00000000000000000000000000000000000000000000000000000007461 209.0
LYD3_k127_4935272_3 - - - - 0.00000000000000008817 84.0
LYD3_k127_4957972_0 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 451.0
LYD3_k127_4957972_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000006368 217.0
LYD3_k127_4961997_0 Belongs to the N(4) N(6)-methyltransferase family K07319 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 360.0
LYD3_k127_4961997_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 297.0
LYD3_k127_4962250_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000007928 241.0
LYD3_k127_4973810_0 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008612 349.0
LYD3_k127_4973810_1 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000000000000001627 186.0
LYD3_k127_4973810_2 cyclic nucleotide-binding K01420,K21563 - - 0.00001336 48.0
LYD3_k127_4983892_0 Glucodextranase, domain N K01178 - 3.2.1.3 2.501e-209 673.0
LYD3_k127_4983892_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001813 273.0
LYD3_k127_4983892_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000003604 192.0
LYD3_k127_4983892_3 hydrolase activity, hydrolyzing O-glycosyl compounds - - - 0.0000000000000000000000001622 113.0
LYD3_k127_4983892_4 Protein of unknown function (DUF2892) - - - 0.0000000000000003463 79.0
LYD3_k127_4983892_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000006151 72.0
LYD3_k127_4999044_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 526.0
LYD3_k127_5004705_0 PFAM Na-Ca exchanger integrin-beta4 - - - 0.00000000000000000000000000000000000000000000000000000001551 210.0
LYD3_k127_5004705_1 peptidyl-prolyl cis-trans isomerase activity K00645,K01802,K02597,K03769,K03770,K03771 - 2.3.1.39,5.2.1.8 0.000241 51.0
LYD3_k127_5009966_0 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003883 550.0
LYD3_k127_5009966_1 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002821 282.0
LYD3_k127_5018280_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008666 340.0
LYD3_k127_5018280_1 cell redox homeostasis K16089 - - 0.0000000000000000000000000000000000005194 150.0
LYD3_k127_503089_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000009079 222.0
LYD3_k127_503089_1 Protein of unknown function (DUF1223) - - - 0.000000000000000000000000000000000000000000000000437 184.0
LYD3_k127_5043533_0 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 375.0
LYD3_k127_5043533_1 Aminoacyl tRNA synthetase class II, N-terminal domain K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000003858 198.0
LYD3_k127_5054411_0 PFAM Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724 310.0
LYD3_k127_5054411_1 GAF domain-containing protein K08968 - 1.8.4.14 0.00000000000000000000000000000000000000000000000000000000003111 207.0
LYD3_k127_505825_0 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE K11893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007605 269.0
LYD3_k127_505825_1 protein conserved in bacteria K11891 - - 0.00000000000000000000000000000000000000000000000000000001427 214.0
LYD3_k127_505825_2 Type IV VI secretion system K11892 - - 0.000000000000000000000000002414 120.0
LYD3_k127_5066914_0 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 316.0
LYD3_k127_5066914_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 301.0
LYD3_k127_5066914_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000001273 83.0
LYD3_k127_5078422_0 PFAM ABC transporter K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 434.0
LYD3_k127_5078422_1 Belongs to the ompA family - - - 0.000000000000000000001944 101.0
LYD3_k127_5084554_0 nucleotide-excision repair K03701 - - 9.339e-274 865.0
LYD3_k127_5086642_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 5.668e-260 821.0
LYD3_k127_5086642_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000002377 121.0
LYD3_k127_5086642_2 Hsp20/alpha crystallin family K13993 - - 0.000000000000000003093 89.0
LYD3_k127_5092335_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 1.63e-312 966.0
LYD3_k127_5092335_1 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008507 452.0
LYD3_k127_5092335_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000007753 138.0
LYD3_k127_510896_0 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003975 392.0
LYD3_k127_510896_1 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000001769 225.0
LYD3_k127_510896_2 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000002122 164.0
LYD3_k127_510896_3 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.0006326 49.0
LYD3_k127_5115014_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009016 269.0
LYD3_k127_5115014_1 Aldehyde dehydrogenase family K22445 - 1.2.99.10 0.00000000000000000000000000000000000000000000000000000000000000000008324 241.0
LYD3_k127_5115014_2 sequence-specific DNA binding K03719 - - 0.0000000000000000000000000000000000000000001248 165.0
LYD3_k127_5116048_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.00000000000000000000000000000000000004908 157.0
LYD3_k127_5116048_1 Peptidase M56 - - - 0.0000000000000003944 83.0
LYD3_k127_5116048_2 mttA/Hcf106 family K03116,K03117 - - 0.00000000835 61.0
LYD3_k127_5142375_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 406.0
LYD3_k127_5142375_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000397 75.0
LYD3_k127_5158229_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000006883 238.0
LYD3_k127_5158229_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000002846 152.0
LYD3_k127_5158229_2 YARHG domain - - - 0.0001873 51.0
LYD3_k127_5158641_0 Predicted Zn-dependent protease (DUF2268) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 305.0
LYD3_k127_5158641_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001577 277.0
LYD3_k127_5167673_0 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008691 350.0
LYD3_k127_5167673_1 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000005454 171.0
LYD3_k127_5167673_2 Haem-binding domain - - - 0.0000000000000000000000000008274 114.0
LYD3_k127_5167673_3 Cysteine-rich secretory protein family - - - 0.000000000000000000006537 100.0
LYD3_k127_5190301_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.000000000000000000000000000000000000000000000000000000000002303 211.0
LYD3_k127_5190301_1 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000009386 207.0
LYD3_k127_5190301_2 TIGRFAM sugar-phosphate isomerase, RpiB LacA LacB family K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000008499 175.0
LYD3_k127_5190301_3 Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000000000000000000000000000002095 138.0
LYD3_k127_5197302_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005822 435.0
LYD3_k127_5197302_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000001203 232.0
LYD3_k127_5197302_2 - - - - 0.000000000000001666 79.0
LYD3_k127_5197302_3 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000002805 57.0
LYD3_k127_5204519_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000006495 261.0
LYD3_k127_5204519_1 Domain of unknown function (DUF2437) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007625 242.0
LYD3_k127_5204519_2 Fibronectin type 3 domain K01179,K06882 - 3.2.1.4 0.000000000003654 74.0
LYD3_k127_5207021_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 307.0
LYD3_k127_5207021_1 Putative restriction endonuclease - - - 0.0000000000000000006857 95.0
LYD3_k127_5208648_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009648 405.0
LYD3_k127_5208648_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.000000000000000000000000007652 120.0
LYD3_k127_5208648_2 Preprotein translocase, YajC subunit K03210 - - 0.0000000000000615 75.0
LYD3_k127_5208648_3 Methylamine utilisation protein MauE - - - 0.000000002912 67.0
LYD3_k127_5208648_4 cell redox homeostasis - - - 0.0000000231 64.0
LYD3_k127_5212707_0 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001439 297.0
LYD3_k127_5212707_1 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000253 200.0
LYD3_k127_5212707_2 Major Facilitator Superfamily K08223 - - 0.00000000000000000000000000000000000000000000000000004303 196.0
LYD3_k127_5212707_3 bacterial (prokaryotic) histone like domain K03530 - - 0.00000000000000000000000000003489 118.0
LYD3_k127_5212707_4 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000004199 79.0
LYD3_k127_5266296_0 Penicillin-binding protein, dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302 369.0
LYD3_k127_5266296_1 shape-determining protein MreC K03570 - - 0.0000000000000001502 85.0
LYD3_k127_5266296_2 TIGRFAM rod shape-determining protein MreD K03571 - - 0.000007945 55.0
LYD3_k127_5268374_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008369 554.0
LYD3_k127_5268374_1 Metallo-beta-lactamase superfamily K01069 GO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615 3.1.2.6 0.0000000000000000000000000000000000005552 143.0
LYD3_k127_5268374_2 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.00000000000000000000000000000000005552 138.0
LYD3_k127_528439_0 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 585.0
LYD3_k127_528439_1 C-terminus of AA_permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000051 213.0
LYD3_k127_528439_2 Receptor family ligand binding region - - - 0.0000000000000000000000000000285 122.0
LYD3_k127_5301392_0 Transport permease protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000882 383.0
LYD3_k127_5301392_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000003084 191.0
LYD3_k127_5301392_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000005453 129.0
LYD3_k127_5315300_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 587.0
LYD3_k127_532560_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 317.0
LYD3_k127_532560_1 Family of unknown function (DUF5339) - - - 0.000000000009469 71.0
LYD3_k127_532560_2 Transporter associated domain K06189 - - 0.00003317 47.0
LYD3_k127_5356658_0 Peptidase S46 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 503.0
LYD3_k127_5366578_0 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.000000000000000000000000000000000000000000000000000000000000000000002372 244.0
LYD3_k127_5366578_1 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000003563 214.0
LYD3_k127_5366578_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000004291 178.0
LYD3_k127_5366578_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.000000000000000000000000000000000000001171 156.0
LYD3_k127_5366578_4 dextransucrase activity - - - 0.000000000000000000000001192 107.0
LYD3_k127_53698_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007801 380.0
LYD3_k127_53698_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000001765 212.0
LYD3_k127_53698_2 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000001139 190.0
LYD3_k127_53698_3 PhoU domain K02039 - - 0.0000000000000000000000000000000000000000000006359 174.0
LYD3_k127_53698_4 - - - - 0.000000000000000533 89.0
LYD3_k127_5394154_0 gamma-glutamyltransferase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 0.0000000000000000000007112 97.0
LYD3_k127_5394154_1 spheroidene biosynthetic process K09844 GO:0003674,GO:0003824,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016122,GO:0016123,GO:0016829,GO:0016835,GO:0016836,GO:0018904,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046148,GO:0071704,GO:1901178,GO:1901180,GO:1901503,GO:1901576 4.2.1.131 0.0000000005318 65.0
LYD3_k127_5394154_2 - - - - 0.00000284 54.0
LYD3_k127_5411928_0 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 457.0
LYD3_k127_5411928_1 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000000000000000003942 208.0
LYD3_k127_5411928_2 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K00966,K00973,K00992 GO:0000166,GO:0000270,GO:0000287,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0005488,GO:0006022,GO:0006040,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019752,GO:0030203,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044281,GO:0046872,GO:0070569,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.7.13,2.7.7.24,2.7.7.99 0.00000000000000000000000000000000000000001341 166.0
LYD3_k127_5411928_3 phosphotransferase related to Ser Thr protein kinases K07102 - 2.7.1.221 0.00000000000000000000000000000000000000001604 166.0
LYD3_k127_5411928_4 - - - - 0.000000000000000000000000004052 115.0
LYD3_k127_5411928_5 cytokinin biosynthetic process K06966 - 3.2.2.10 0.00000000000000000000000001987 115.0
LYD3_k127_5420781_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000001562 161.0
LYD3_k127_5420781_1 TIGRFAM ribonuclease, Rne Rng family K08300,K08301 - 3.1.26.12 0.00000000000000000000001136 104.0
LYD3_k127_5423095_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002424 404.0
LYD3_k127_5423095_1 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.0000000000000000000000000000000000000000000000000000000000000000000000008904 257.0
LYD3_k127_5423095_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000003059 213.0
LYD3_k127_5423095_3 YjbR - - - 0.000000000000000000000000000014 122.0
LYD3_k127_5424549_0 Male sterility protein K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 381.0
LYD3_k127_5424549_1 Glycosyl hydrolase family 47 K01230,K10085 - 3.2.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 287.0
LYD3_k127_5436731_0 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000002157 271.0
LYD3_k127_5436731_1 TIGRFAM outer membrane protein assembly complex, YaeT protein K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000447 286.0
LYD3_k127_5436731_2 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000001928 177.0
LYD3_k127_5436731_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000567 100.0
LYD3_k127_5436731_4 PFAM Forkhead-associated - - - 0.000000006555 66.0
LYD3_k127_5436731_5 unfolded protein binding K06142 - - 0.0006232 49.0
LYD3_k127_5447794_0 ROK family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007658 432.0
LYD3_k127_5447794_1 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000001784 215.0
LYD3_k127_5447794_2 Putative esterase - - - 0.0000000000000000000000004376 109.0
LYD3_k127_5464746_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 487.0
LYD3_k127_5464746_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 466.0
LYD3_k127_5464746_2 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 404.0
LYD3_k127_5464746_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000003525 243.0
LYD3_k127_5464746_4 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000001725 173.0
LYD3_k127_5464746_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000001507 167.0
LYD3_k127_5464746_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.3 0.0000000000000000000000000000002862 128.0
LYD3_k127_5470998_0 TIGRFAM parallel beta-helix repeat (two copies) K07218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 301.0
LYD3_k127_5470998_1 Cytochrome C oxidase subunit II, periplasmic domain K00376 - 1.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004852 286.0
LYD3_k127_5470998_2 lipoprotein involved in nitrous oxide reduction - - - 0.00000000000000000000000000000000000000000000000000000000001515 214.0
LYD3_k127_5488971_0 exonuclease K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009794 275.0
LYD3_k127_5498310_0 acetaldehyde dehydrogenase (acetylating) K00132,K13922,K15515,K18119 - 1.2.1.10,1.2.1.76,1.2.1.81,1.2.1.87 0.00000000000000000000000000000000000000000000000000000000000000006576 235.0
LYD3_k127_5498310_1 BMC domain K04027 - - 0.00000000000000000000000000006655 119.0
LYD3_k127_5498310_2 von Willebrand factor (vWF) type A domain K07114 - - 0.000000000000001795 82.0
LYD3_k127_5505208_0 ErfK YbiS YcfS YnhG family protein - - - 0.000000000000000000000000000000000000001262 158.0
LYD3_k127_5505208_1 Peptidase M61 - - - 0.000000000000000000000008127 109.0
LYD3_k127_5512038_0 CHASE3 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 441.0
LYD3_k127_5512038_1 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 431.0
LYD3_k127_5512038_2 Belongs to the universal stress protein A family - - - 0.0000008233 60.0
LYD3_k127_5514273_0 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000027 220.0
LYD3_k127_5514273_1 PFAM Sigma 54 modulation protein S30EA ribosomal protein K05808 - - 0.00005674 51.0
LYD3_k127_5515523_0 Glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 6.033e-244 766.0
LYD3_k127_5515523_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0000000000000000000000000000000000000000004396 159.0
LYD3_k127_5528335_0 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 290.0
LYD3_k127_5528335_1 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001477 286.0
LYD3_k127_5528335_2 Phosphate acyltransferases K01897 - 6.2.1.3 0.00000000000000000000000000002054 121.0
LYD3_k127_5528335_3 Belongs to the mandelate racemase muconate lactonizing enzyme family K01706 - 4.2.1.40 0.000000001578 58.0
LYD3_k127_5535966_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009902 287.0
LYD3_k127_5535966_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001689 247.0
LYD3_k127_5535966_2 - - - - 0.0000000000000000000000000000000000000000000000000000001068 203.0
LYD3_k127_5535966_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000009543 112.0
LYD3_k127_5540975_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 313.0
LYD3_k127_5540975_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000001598 177.0
LYD3_k127_5551991_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1289.0
LYD3_k127_5551991_1 PQQ enzyme repeat K00114 - 1.1.2.8 0.00000000000000000000000000000000000000000000000000000000001904 212.0
LYD3_k127_5565346_0 - - - - 0.0000000000000000000000000000000000000000003684 167.0
LYD3_k127_5565346_1 SnoaL-like domain - - - 0.0000000000000002823 86.0
LYD3_k127_5565346_2 - - - - 0.00000000000001875 78.0
LYD3_k127_5565346_3 radical SAM K06871 - - 0.000006251 51.0
LYD3_k127_5569575_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 9.374e-228 713.0
LYD3_k127_5569575_1 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000002081 177.0
LYD3_k127_5569575_2 dehydratase K01724 - 4.2.1.96 0.00000000000000000001543 94.0
LYD3_k127_562545_0 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007046 301.0
LYD3_k127_562545_1 histidyl-tRNA synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009233 259.0
LYD3_k127_562545_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000004311 170.0
LYD3_k127_562545_3 Signal peptidase I K03100 - 3.4.21.89 0.00000000000002162 78.0
LYD3_k127_562545_4 Fumarylacetoacetate (FAA) hydrolase family K01555 - 3.7.1.2 0.00000000003477 64.0
LYD3_k127_5625854_0 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 430.0
LYD3_k127_5625854_1 GDSL-like Lipase/Acylhydrolase K10804 - 3.1.1.5 0.000000000000000000000000000000000000000000000009092 181.0
LYD3_k127_56263_0 response regulator K02657,K03413 - - 0.00000000000000000000000000000002795 139.0
LYD3_k127_5638214_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 576.0
LYD3_k127_5638214_1 CbbQ/NirQ/NorQ C-terminal K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004252 281.0
LYD3_k127_5638214_2 Acetyltransferase (GNAT) domain - GO:0003674,GO:0003824,GO:0008080,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747 - 0.0000000000000000000000000000000000000000000001248 173.0
LYD3_k127_5645729_0 Domain of unknown function (DUF4932) - - - 0.00000000000000000000000000000000000000000000000000000000000000000009427 248.0
LYD3_k127_5645729_1 PHP domain protein - - - 0.00000000000000000951 96.0
LYD3_k127_5645729_2 Stress responsive A/B Barrel Domain - - - 0.00000000000006359 76.0
LYD3_k127_5645729_3 Peptidase family M1 domain - - - 0.00004876 49.0
LYD3_k127_5652580_0 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003803 349.0
LYD3_k127_5652580_1 Rad52 22 double-strand break repair protein - GO:0001101,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009269,GO:0009314,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010035,GO:0010212,GO:0010332,GO:0031668,GO:0033554,GO:0034641,GO:0042221,GO:0042631,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071465,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0090304,GO:0104004,GO:1901360,GO:1901700,GO:1901701 - 0.0000000966 61.0
LYD3_k127_5652580_2 sequence-specific DNA binding - - - 0.00007388 50.0
LYD3_k127_5665431_0 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 378.0
LYD3_k127_5665431_1 surface antigen variable number - - - 0.000000000000000008302 91.0
LYD3_k127_5666512_0 glycyl-tRNA aminoacylation K01880 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006426,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009345,GO:0009987,GO:0010467,GO:0016070,GO:0016594,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042165,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 548.0
LYD3_k127_5666512_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000008365 195.0
LYD3_k127_5666512_2 PFAM UDP-glucoronosyl and UDP-glucosyl transferase - - - 0.00000000000000000000000000000000006087 137.0
LYD3_k127_566772_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 364.0
LYD3_k127_566772_1 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000002092 249.0
LYD3_k127_566772_2 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000000113 156.0
LYD3_k127_566772_3 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.00000000000008283 72.0
LYD3_k127_5671779_0 COG0479 Succinate dehydrogenase fumarate reductase, Fe-S protein subunit K00240 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 303.0
LYD3_k127_5671779_1 succinate dehydrogenase K00239 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0022900,GO:0044237,GO:0045333,GO:0055114 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000004873 196.0
LYD3_k127_5671779_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor - - - 0.00000000000000000000002702 107.0
LYD3_k127_5690928_0 Peptidase family M1 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 492.0
LYD3_k127_5698490_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 3.961e-306 952.0
LYD3_k127_5698490_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000001388 70.0
LYD3_k127_570288_0 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000002901 241.0
LYD3_k127_570288_1 acylphosphatase activity K01512 - 3.6.1.7 0.00000000000000001196 85.0
LYD3_k127_5707024_0 - - - - 0.0000000000000000000000000000000005137 141.0
LYD3_k127_5707024_1 - - - - 0.0000000000000000000213 94.0
LYD3_k127_5707024_2 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase K19302 - 3.6.1.27 0.0000002343 60.0
LYD3_k127_5710938_0 phosphohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 342.0
LYD3_k127_5710938_1 Diacylglycerol kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001371 281.0
LYD3_k127_5710938_2 von Willebrand factor (vWF) type A domain K07114 - - 0.00000000000000000002249 100.0
LYD3_k127_5718325_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008617 527.0
LYD3_k127_5718325_1 SPFH domain, Band 7 family protein - - - 0.0000000000000000000000000000000000000000000000000000003019 199.0
LYD3_k127_5725701_0 Cytochrome C and Quinol oxidase polypeptide I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 467.0
LYD3_k127_5725701_1 Bacterial-like globin K06886 - - 0.0000000000000000000000000000000007669 135.0
LYD3_k127_5725701_2 - - - - 0.000000000000000000000000000485 118.0
LYD3_k127_5730097_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000518 138.0
LYD3_k127_5730097_1 - - - - 0.000000004104 62.0
LYD3_k127_5736116_0 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000745 255.0
LYD3_k127_5736116_1 PIN domain - - - 0.00000000000000000000001569 105.0
LYD3_k127_5736116_2 Transglycosylase SLT domain K08309 - - 0.00000000000000000000006756 106.0
LYD3_k127_5736116_3 PDZ DHR GLGF domain protein - - - 0.0000009244 56.0
LYD3_k127_5737119_0 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 561.0
LYD3_k127_5737119_1 Aldehyde dehydrogenase K00294 - 1.2.1.88 0.0000000000000000000000000000000000000001539 151.0
LYD3_k127_5741945_0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 3.815e-194 613.0
LYD3_k127_5741945_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000003924 89.0
LYD3_k127_5741945_2 - - - - 0.000000001245 67.0
LYD3_k127_5746743_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1293.0
LYD3_k127_5746743_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 292.0
LYD3_k127_5746743_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000000000000000000009216 206.0
LYD3_k127_5746743_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000002113 208.0
LYD3_k127_5746743_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000001016 154.0
LYD3_k127_5746743_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000004661 146.0
LYD3_k127_5746743_6 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000006155 101.0
LYD3_k127_5746743_7 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000008689 80.0
LYD3_k127_5754534_0 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000002221 151.0
LYD3_k127_5754534_1 Universal stress protein family - - - 0.00000000000000006011 88.0
LYD3_k127_5755061_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 361.0
LYD3_k127_5755061_1 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002486 283.0
LYD3_k127_575514_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071496 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 473.0
LYD3_k127_575514_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002989 254.0
LYD3_k127_5785158_0 glutamate carboxypeptidase K01301 - 3.4.17.21 0.00000000000000000000000000000000000000000000000000000003337 202.0
LYD3_k127_5785158_1 - - - - 0.0000000000000000000000000000000000000000008787 160.0
LYD3_k127_5785158_2 NUDIX domain - - - 0.000000000000000000000000000000000000000003018 161.0
LYD3_k127_5785158_3 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000001936 130.0
LYD3_k127_579642_0 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.0000000000000000000000000000000000000000000000000007862 202.0
LYD3_k127_579642_1 ABC transporter related - - - 0.00000000000000000000000000000000006981 147.0
LYD3_k127_579642_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000003776 104.0
LYD3_k127_579642_3 Uncharacterized conserved protein (DUF2203) - - - 0.00000000001198 64.0
LYD3_k127_579642_4 RDD family - - - 0.000005481 59.0
LYD3_k127_581889_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0000287,GO:0003674,GO:0003824,GO:0004799,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046385,GO:0046483,GO:0046872,GO:0050896,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 333.0
LYD3_k127_581889_1 OmpA family - - - 0.00000000000000000000000005384 122.0
LYD3_k127_5819865_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 524.0
LYD3_k127_5819865_1 DJ-1/PfpI family K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 281.0
LYD3_k127_5819865_2 Cellulase (glycosyl hydrolase family 5) K19355 - 3.2.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000000185 246.0
LYD3_k127_5819865_3 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000007985 127.0
LYD3_k127_5839926_0 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 373.0
LYD3_k127_5839926_1 Inward rectifier potassium channel K08715 - - 0.00000000000000000000000000000000000000000000000000000000005566 209.0
LYD3_k127_5839926_2 Riboflavin synthase K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000000017 204.0
LYD3_k127_5839926_3 Type II/IV secretion system protein K02669 - - 0.00008172 47.0
LYD3_k127_5845515_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004952 426.0
LYD3_k127_5845515_1 PFAM Organic solvent tolerance protein K04744 - - 0.0000000000000000000000000000000001659 149.0
LYD3_k127_5846357_0 PFAM Allophanate hydrolase subunit 2 K06350 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003105 275.0
LYD3_k127_5846357_1 LamB/YcsF family K07160 - - 0.0000000000000000000000000000000000000000000000000000000000008201 214.0
LYD3_k127_5846357_2 Pfam:AHS1 - - - 0.000000000000000000000000000000000000000002581 160.0
LYD3_k127_5852896_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 312.0
LYD3_k127_5852896_1 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000009244 203.0
LYD3_k127_5852896_2 - - - - 0.0000000002893 66.0
LYD3_k127_5859125_0 PFAM aminotransferase class I and II K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 511.0
LYD3_k127_5859125_1 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007777 499.0
LYD3_k127_5859125_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 388.0
LYD3_k127_5859125_3 polysaccharide export K01991 - - 0.0000000000001648 81.0
LYD3_k127_586915_0 Pyrrolo-quinoline quinone K00114 - 1.1.2.8 4.624e-238 742.0
LYD3_k127_586915_1 PFAM extracellular solute-binding protein, family 3 K16254 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 315.0
LYD3_k127_586915_2 cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 298.0
LYD3_k127_586915_3 PFAM Cytochrome C K00406 - - 0.000000000000000000000000000000000000000000000003774 179.0
LYD3_k127_5871982_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 3.34e-208 653.0
LYD3_k127_5893775_0 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 456.0
LYD3_k127_5893775_1 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 354.0
LYD3_k127_5893775_2 Flavin containing amine oxidoreductase K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 330.0
LYD3_k127_5893775_3 ferrochelatase activity K01772 GO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009314,GO:0009416,GO:0009628,GO:0009987,GO:0016020,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0040007,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000009491 231.0
LYD3_k127_5937705_0 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000002584 163.0
LYD3_k127_5937705_1 acid phosphatase activity - - - 0.00000002676 57.0
LYD3_k127_5937705_2 Tetratricopeptide repeat - - - 0.0002224 51.0
LYD3_k127_5964692_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000004204 185.0
LYD3_k127_5964692_1 - - - - 0.00000000000000000001238 102.0
LYD3_k127_5982306_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006201 298.0
LYD3_k127_5982306_1 COG1063 Threonine dehydrogenase and related Zn-dependent K00008 - 1.1.1.14 0.000000000000000000000000000000002915 132.0
LYD3_k127_5982306_2 Aldehyde dehydrogenase family K22187 - - 0.00000000002012 70.0
LYD3_k127_599186_0 von Willebrand factor (vWF) type A domain K02448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007291 321.0
LYD3_k127_599186_1 phosphoglycolate phosphatase activity - - - 0.000000000000000000000000000000000000000000000003467 175.0
LYD3_k127_599186_2 - - - - 0.00004178 55.0
LYD3_k127_5998195_0 PFAM Bile acid sodium symporter K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 301.0
LYD3_k127_5998195_1 FecR protein - - - 0.00000000000000000000000000000000000000000000000002378 198.0
LYD3_k127_5998195_2 low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.0000000000000000000000000000000000000001082 157.0
LYD3_k127_6026684_0 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000005102 231.0
LYD3_k127_6026684_1 PFAM Glycosyl transferase, family 2 K07011,K20444 - - 0.00000000000000000000000000000000000000000005729 171.0
LYD3_k127_6043996_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 411.0
LYD3_k127_6043996_1 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006206 302.0
LYD3_k127_6043996_2 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001012 279.0
LYD3_k127_6043996_3 Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009499 276.0
LYD3_k127_6049526_0 Peptidase family M3 K01284 - 3.4.15.5 9.02e-255 796.0
LYD3_k127_6049526_1 Ferredoxin - - - 0.0000000000000000000000005105 109.0
LYD3_k127_6049741_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 593.0
LYD3_k127_6049741_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000001663 108.0
LYD3_k127_6049741_2 Helix-hairpin-helix motif K02237 - - 0.0000000000003467 74.0
LYD3_k127_605889_0 D-aminoacylase domain protein K01465,K06015 - 3.5.1.81,3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 565.0
LYD3_k127_605889_1 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 332.0
LYD3_k127_605889_2 META domain - - - 0.000005885 57.0
LYD3_k127_606139_0 DEAD DEAH box helicase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009083 382.0
LYD3_k127_606139_1 PFAM Substrate binding domain of ABC-type glycine betaine transport system K05845,K05846 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001455 251.0
LYD3_k127_606139_2 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000002621 160.0
LYD3_k127_606139_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K13888 - - 0.000000000000000000000000000000004711 145.0
LYD3_k127_606139_4 AcrB/AcrD/AcrF family K03296 - - 0.00000005049 54.0
LYD3_k127_606139_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - 0.00001758 52.0
LYD3_k127_6063350_0 e3 binding domain K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 446.0
LYD3_k127_6063350_1 Belongs to the ompA family - - - 0.000000000000000000001535 106.0
LYD3_k127_6063350_2 oxidoreductase activity K12511 - - 0.00000000004718 70.0
LYD3_k127_606761_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 7.348e-203 642.0
LYD3_k127_606761_1 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002171 278.0
LYD3_k127_606780_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009873 566.0
LYD3_k127_6071186_0 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000000003798 153.0
LYD3_k127_6071186_1 MOSC domain - - - 0.0000000000000000000000002855 108.0
LYD3_k127_6079251_0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 375.0
LYD3_k127_6079251_1 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000006438 226.0
LYD3_k127_6079251_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000003545 114.0
LYD3_k127_6079251_3 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000116 98.0
LYD3_k127_6090075_0 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 439.0
LYD3_k127_6090075_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009537 269.0
LYD3_k127_6090075_2 O-Antigen ligase K02847 - - 0.0000000000000000000000005772 117.0
LYD3_k127_6090075_3 Carbohydrate binding domain - - - 0.000001637 60.0
LYD3_k127_6090075_4 Tetratricopeptide repeat K12600 GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0043170,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 - 0.0001445 54.0
LYD3_k127_6106057_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001072 287.0
LYD3_k127_6106057_1 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.000000000000000000000000000000000001257 141.0
LYD3_k127_6106057_2 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.0000000000000000000000000002391 122.0
LYD3_k127_6126555_0 Aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 308.0
LYD3_k127_6126555_1 - - - - 0.0000000000000000000000000000000000808 138.0
LYD3_k127_6126555_2 TIGRFAM cytochrome c oxidase, cbb3-type, subunit III K00406 - - 0.00003125 52.0
LYD3_k127_6128841_0 PHP domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003165 250.0
LYD3_k127_6128841_1 lysine biosynthetic process via aminoadipic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000001319 244.0
LYD3_k127_6128841_2 - - - - 0.0000000000000000000000000000000000000000002898 179.0
LYD3_k127_6145800_0 transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 434.0
LYD3_k127_6150177_0 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005781 271.0
LYD3_k127_6150177_1 RNA polymerase sigma-54 factor K03092 - - 0.000000000000000000000000000000000001114 149.0
LYD3_k127_6156257_0 Amidohydrolase family K01464 - 3.5.2.2 2.475e-197 625.0
LYD3_k127_6156257_1 PFAM beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009338 450.0
LYD3_k127_6156257_2 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000001473 203.0
LYD3_k127_617333_0 Methionine synthase K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 1.136e-310 965.0
LYD3_k127_6180149_0 Pyridoxal-dependent decarboxylase conserved domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 506.0
LYD3_k127_6180149_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 470.0
LYD3_k127_6180149_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000001807 147.0
LYD3_k127_6212754_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 541.0
LYD3_k127_6212754_1 peptidase S9A, prolyl oligopeptidase domain protein beta-propeller K01354 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0070012,GO:0071704,GO:0140096,GO:1901564 3.4.21.83 0.00000000000000000000000000000000000000000000000000000000000000000002746 236.0
LYD3_k127_6212754_2 TIGRFAM maf protein K06287 - - 0.00000000000000000000000000000000000001053 149.0
LYD3_k127_6212754_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000007482 83.0
LYD3_k127_6212754_4 Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives - - - 0.0007477 48.0
LYD3_k127_6232589_0 DALR_2 K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008804 416.0
LYD3_k127_6232589_1 HNH endonuclease - - - 0.000000000000000000000000000000002232 137.0
LYD3_k127_6232589_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000156 124.0
LYD3_k127_6232589_3 - - - - 0.00000000000000000000000000003511 122.0
LYD3_k127_6233352_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 377.0
LYD3_k127_6233352_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000001457 165.0
LYD3_k127_6234599_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 458.0
LYD3_k127_6234599_1 Transcriptional regulator, LysR - - - 0.00000000000000000000000000000003388 128.0
LYD3_k127_6251738_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 421.0
LYD3_k127_6251738_1 Belongs to the metal hydrolase YfiT family - - - 0.00000000000000000000000000000000000000000000000000000000001423 213.0
LYD3_k127_6251738_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000006742 179.0
LYD3_k127_6251738_3 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000006505 149.0
LYD3_k127_6251738_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000002553 137.0
LYD3_k127_6251738_5 Domain of unknown function (DUF5009) - - - 0.00000000000000000000000000003122 123.0
LYD3_k127_6251738_6 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000002097 107.0
LYD3_k127_6251738_7 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000009552 84.0
LYD3_k127_6251738_8 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000408 43.0
LYD3_k127_6252038_0 glutamate--cysteine ligase - - - 5.881e-208 667.0
LYD3_k127_6252038_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000003853 201.0
LYD3_k127_6252038_2 - - - - 0.0000002627 59.0
LYD3_k127_6265975_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006922 340.0
LYD3_k127_6265975_1 Biotin-lipoyl like K02005 - - 0.0000000000000000000000000000000000000000002455 168.0
LYD3_k127_6284437_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000001349 255.0
LYD3_k127_6284437_1 PFAM Nickel cobalt transporter, high-affinity - - - 0.000000000000000000000000000000000000000000000005481 181.0
LYD3_k127_6284437_2 Carbohydrate family 9 binding domain-like - - - 0.00000000000000000000000000713 119.0
LYD3_k127_6284437_3 ubiE/COQ5 methyltransferase family - - - 0.0002627 51.0
LYD3_k127_6296962_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K17722 - 1.3.1.1 1.407e-215 672.0
LYD3_k127_6296962_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000003836 204.0
LYD3_k127_6297441_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 590.0
LYD3_k127_6297441_1 Gram-negative bacterial TonB protein C-terminal - - - 0.0000003364 61.0
LYD3_k127_6302055_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.0 1692.0
LYD3_k127_6302055_1 - - - - 0.0000000006333 65.0
LYD3_k127_630399_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009625 256.0
LYD3_k127_630399_1 Alternative locus ID - - - 0.0000000000000000000000000000000000000000000002028 178.0
LYD3_k127_6323280_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1226.0
LYD3_k127_6328178_0 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000004827 233.0
LYD3_k127_6328178_1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000007865 149.0
LYD3_k127_6328178_2 Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of three 3-deoxy-D-manno-octulosonate (Kdo) residues from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide- 1,4'-bisphosphate precursor of lipid A. Thus generates the genus- specific LPS epitope of Chlamydia, composed of the trisaccharide alpha-Kdo-(2- 8)-alpha-Kdo-(2- 4)-alpha-Kdo K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000004031 88.0
LYD3_k127_6328178_3 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process - - - 0.00000000009045 63.0
LYD3_k127_6349929_0 belongs to the sigma-70 factor family, ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002753 248.0
LYD3_k127_6349929_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000000000000000000000003327 214.0
LYD3_k127_6349929_2 arylformamidase activity - - - 0.00000000000000000000000000001947 121.0
LYD3_k127_6349929_3 - K01822 - 5.3.3.1 0.00001483 47.0
LYD3_k127_6350055_0 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 343.0
LYD3_k127_6350055_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000001117 99.0
LYD3_k127_6360996_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 4.826e-211 666.0
LYD3_k127_6360996_1 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000009175 244.0
LYD3_k127_6360996_2 Transporter associated domain - - - 0.0000000000000000000000000000000000000000000000000000000005517 218.0
LYD3_k127_6360996_3 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000001201 170.0
LYD3_k127_6360996_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000009346 100.0
LYD3_k127_6362555_0 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 320.0
LYD3_k127_6362555_1 Required for morphogenesis under gluconeogenic growth conditions - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000631 318.0
LYD3_k127_6362555_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000001301 147.0
LYD3_k127_6362555_3 PFAM Roadblock LC7 family protein - - - 0.0000000000000000000000000000000000001933 147.0
LYD3_k127_6373601_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009539 496.0
LYD3_k127_6373601_1 COGs COG0318 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000985 180.0
LYD3_k127_6373601_2 Activator of Hsp90 ATPase - - - 0.00000000000000000000000007357 109.0
LYD3_k127_6375948_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000522 455.0
LYD3_k127_6375948_1 DinB superfamily - - - 0.00000000000000000000000000000000000000009322 155.0
LYD3_k127_6375948_2 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000002427 104.0
LYD3_k127_6376389_0 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000005021 259.0
LYD3_k127_6376389_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000005297 233.0
LYD3_k127_6384139_0 Required for chromosome condensation and partitioning K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008815 274.0
LYD3_k127_6411694_0 Glycosyl transferase 4-like K00754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 409.0
LYD3_k127_6411694_1 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000001723 236.0
LYD3_k127_6411694_2 polyphosphate kinase activity - - - 0.00000000001444 67.0
LYD3_k127_6411820_0 beta-glucosidase activity K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 350.0
LYD3_k127_6411820_1 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000001949 199.0
LYD3_k127_6426587_0 KaiC - - - 4.237e-245 769.0
LYD3_k127_6426587_1 KaiB K08481 - - 0.000000000000000000000000000000000000003306 151.0
LYD3_k127_6426587_2 PFAM KaiB domain K08481 - - 0.000000000000000000000000002596 114.0
LYD3_k127_6429557_0 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 371.0
LYD3_k127_6429930_0 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000138 273.0
LYD3_k127_6429930_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000001177 209.0
LYD3_k127_6429930_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0008150,GO:0015934,GO:0016020,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071944,GO:1990904 - 0.0000000000000000000000000000000000000000001215 162.0
LYD3_k127_6429930_3 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000001516 111.0
LYD3_k127_6431571_0 class II (D K K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009614 593.0
LYD3_k127_6431571_1 protein secretion by the type I secretion system K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 545.0
LYD3_k127_6431571_2 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.000000000000000000000000005344 113.0
LYD3_k127_6438473_0 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005674 283.0
LYD3_k127_6438473_1 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000001533 166.0
LYD3_k127_6438473_2 Glycosyl transferase, family 4 K02851 - 2.7.8.33,2.7.8.35 0.00008238 49.0
LYD3_k127_6478311_0 ABC transporter K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 443.0
LYD3_k127_6478311_1 chlorophyll binding - - - 0.0000000000000000000000000001609 129.0
LYD3_k127_6478311_2 domain protein - - - 0.000000000000000000000000003849 117.0
LYD3_k127_6478311_3 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000009957 105.0
LYD3_k127_6484843_0 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007288 273.0
LYD3_k127_6484843_1 Secretin and TonB N terminus short domain K02666 - - 0.000000000000000000000000000000000000000000000000000002833 209.0
LYD3_k127_6484843_2 PFAM Pilus assembly protein PilO K02664 - - 0.000000008143 64.0
LYD3_k127_6484843_3 Fimbrial assembly protein (PilN) K02663 - - 0.0001843 52.0
LYD3_k127_6511610_0 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 519.0
LYD3_k127_6511610_1 PFAM regulatory protein TetR K13770 - - 0.000000000000001515 78.0
LYD3_k127_6522346_0 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 476.0
LYD3_k127_6522346_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000006759 221.0
LYD3_k127_6525570_0 PEP-utilising enzyme, mobile domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 400.0
LYD3_k127_6525570_1 Predicted membrane protein (DUF2085) - - - 0.00000000000000007718 87.0
LYD3_k127_6525570_2 Subtilase family K14645 GO:0005575,GO:0005576 - 0.0000000001975 68.0
LYD3_k127_6526493_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004651 442.0
LYD3_k127_6526493_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000006459 116.0
LYD3_k127_6528085_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K03820 - - 0.00000000000000000000000000007346 132.0
LYD3_k127_6528085_1 peptidyl-tyrosine sulfation - - - 0.00000002689 65.0
LYD3_k127_6528138_0 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000000000000000000000009921 191.0
LYD3_k127_6528138_1 HI0933-like protein K07007 - - 0.000000000000000000000000000000000000000004253 157.0
LYD3_k127_6528138_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000001723 157.0
LYD3_k127_6528138_3 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000000000001068 137.0
LYD3_k127_6528138_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000002233 64.0
LYD3_k127_6528715_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000001704 151.0
LYD3_k127_6528715_1 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000000000000000008669 121.0
LYD3_k127_6528715_2 RNA recognition motif - - - 0.0000000000000000000000000001643 118.0
LYD3_k127_6528715_3 - - - - 0.000003138 50.0
LYD3_k127_6528715_4 Protein conserved in bacteria - - - 0.0003713 51.0
LYD3_k127_6533070_0 aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000687 453.0
LYD3_k127_6533070_1 Alternative locus ID K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0032259,GO:0042084,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.000000000000000000003168 96.0
LYD3_k127_6533070_2 Bacterial protein of unknown function (DUF937) - - - 0.0000000000001855 72.0
LYD3_k127_6543086_0 elongation factor Tu domain 2 protein K02355 - - 4.416e-205 659.0
LYD3_k127_6543086_1 TPR repeat - - - 0.0000005313 61.0
LYD3_k127_6550766_0 Homoserine dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006286 286.0
LYD3_k127_6550766_1 Xylose isomerase-like TIM barrel K06606 - 5.3.99.11 0.00000000000000000000000000000000000000000000000000000000000000000002816 241.0
LYD3_k127_6550766_2 COGs COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM invasin domains) K08309 - - 0.0001259 47.0
LYD3_k127_6558650_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 446.0
LYD3_k127_6558650_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0000000000000000000000000000000000000000000000004666 187.0
LYD3_k127_6562156_0 Belongs to the mandelate racemase muconate lactonizing enzyme family K01706 - 4.2.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 496.0
LYD3_k127_6562156_1 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 368.0
LYD3_k127_6563288_0 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 489.0
LYD3_k127_6563288_1 Gene 25-like lysozyme K11897 - - 0.00000000000000000000000000000002502 131.0
LYD3_k127_6563288_2 Type VI secretion system effector, Hcp K11903 - - 0.000000000001161 73.0
LYD3_k127_6563416_0 Pyridine nucleotide-disulphide oxidoreductase K03885,K17218 - 1.6.99.3,1.8.5.4 0.0000000000000000000000000000000000000000000306 176.0
LYD3_k127_6563416_1 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000004604 149.0
LYD3_k127_6563416_2 Protein of unknown function (DUF2934) - - - 0.000000000000000000000000004171 119.0
LYD3_k127_6563416_3 Universal stress protein family - - - 0.0000000000000000000007952 100.0
LYD3_k127_6563416_4 Trypsin-like peptidase domain - - - 0.0005849 51.0
LYD3_k127_6569980_1 OsmC-like protein K07397 - - 0.000000000000000000000000000000000000002001 151.0
LYD3_k127_6569980_3 Protein of unknown function (DUF3828) - - - 0.00000001932 61.0
LYD3_k127_6574803_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 1.059e-314 973.0
LYD3_k127_6574803_1 Belongs to the BI1 family K06890 - - 0.0000000000000000000000000000000000000000000000000000000000000000007687 235.0
LYD3_k127_6574803_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000001274 200.0
LYD3_k127_6574803_3 DoxX - - - 0.00000000000000000000000000000000000000002808 158.0
LYD3_k127_6574803_4 - - - - 0.000000000000000000003918 94.0
LYD3_k127_6574803_5 Tyrosine phosphatase family - - - 0.0000000000000001344 85.0
LYD3_k127_6574803_6 peroxiredoxin activity K03564 - 1.11.1.15 0.0000000000000003033 82.0
LYD3_k127_6574803_7 exodeoxyribonuclease VII activity K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000000001221 72.0
LYD3_k127_6583577_0 Cytochrome C and Quinol oxidase polypeptide I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 392.0
LYD3_k127_6583577_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000005772 154.0
LYD3_k127_6583577_2 Cupin 2, conserved barrel domain protein - - - 0.0007529 46.0
LYD3_k127_6602607_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005153 591.0
LYD3_k127_6602607_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 547.0
LYD3_k127_6602607_2 Uncharacterised conserved protein (DUF2156) - - - 0.000000000003958 76.0
LYD3_k127_6609407_0 glutamine-fructose-6-phosphate transaminase (isomerizing) activity K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 379.0
LYD3_k127_6609407_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005795 318.0
LYD3_k127_6609407_2 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000001534 184.0
LYD3_k127_6609407_3 COGs COG0515 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000001474 138.0
LYD3_k127_6609407_4 carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000000000000000004607 123.0
LYD3_k127_6609407_5 PFAM O-antigen polymerase - - - 0.000009733 58.0
LYD3_k127_6620297_0 PFAM Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007372 261.0
LYD3_k127_6620297_1 TonB-dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000001631 197.0
LYD3_k127_6620297_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000002347 115.0
LYD3_k127_662276_0 Carbamoyl-phosphate synthetase large chain domain protein K01961,K01968,K11263 - 6.3.4.14,6.4.1.2,6.4.1.3,6.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 389.0
LYD3_k127_662276_1 oligosaccharyl transferase activity K07151 - 2.4.99.18 0.000314 48.0
LYD3_k127_6651669_0 amino acid - - - 1.156e-243 769.0
LYD3_k127_6651669_1 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 368.0
LYD3_k127_6651669_2 Probable zinc-ribbon domain - - - 0.000000000000000000000001855 107.0
LYD3_k127_667338_0 radical SAM domain protein K04070 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 375.0
LYD3_k127_667338_1 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 353.0
LYD3_k127_667338_2 response to pH - - - 0.0000000000000000000000000000000000000000447 157.0
LYD3_k127_667338_3 Protein of unknown function (DUF2721) - - - 0.0000000000000000000004581 104.0
LYD3_k127_6676276_0 domain protein - - - 0.0000000000000000000000000000000000007965 158.0
LYD3_k127_6676276_1 Tricorn protease homolog K08676 - - 0.000000000000000000000000000000007266 132.0
LYD3_k127_6676276_2 TonB dependent receptor - - - 0.00000006319 64.0
LYD3_k127_6677968_0 Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system K10441,K10545 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 441.0
LYD3_k127_6677968_1 Putative glucoamylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 419.0
LYD3_k127_6677968_2 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.0000000000000000001959 102.0
LYD3_k127_675585_0 PFAM ATP dependent DNA ligase domain protein K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 6.007e-199 633.0
LYD3_k127_675585_1 nucleic acid phosphodiester bond hydrolysis K07577 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005784 437.0
LYD3_k127_675585_2 transmembrane transporter activity - - - 0.00000000000000000000000000000001165 141.0
LYD3_k127_675585_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000001966 127.0
LYD3_k127_685666_0 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003244 324.0
LYD3_k127_685666_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000004593 243.0
LYD3_k127_685666_2 iron ion homeostasis - - - 0.00000000000004321 84.0
LYD3_k127_685666_3 metal-dependent membrane protease K07052 - - 0.0000000004887 70.0
LYD3_k127_691979_0 PFAM Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000002382 186.0
LYD3_k127_691979_1 PFAM ResB family protein K07399 - - 0.0000000000000000000000000000006575 138.0
LYD3_k127_691979_2 PFAM cytochrome c class III - GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0008646 51.0
LYD3_k127_695768_0 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 363.0
LYD3_k127_695768_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005047 245.0
LYD3_k127_69868_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 427.0
LYD3_k127_69868_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 361.0
LYD3_k127_69868_2 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000000000000000000000000000001218 205.0
LYD3_k127_69868_3 Surface antigen K07277 - - 0.0000000000000000009464 102.0
LYD3_k127_69868_4 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000004007 69.0
LYD3_k127_699812_0 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000004876 241.0
LYD3_k127_699812_1 MlaD protein K02067 - - 0.0000000000000000000000000000001015 137.0
LYD3_k127_711470_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 491.0
LYD3_k127_711470_1 TIGRFAM VWFA-related Acidobacterial domain - - - 0.00000000000000000000000000004423 131.0
LYD3_k127_73971_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 328.0
LYD3_k127_73971_1 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000002361 135.0
LYD3_k127_73971_2 - - - - 0.000000000000000000000000000000004507 134.0
LYD3_k127_740578_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 427.0
LYD3_k127_740578_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000003187 132.0
LYD3_k127_740578_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0001347 51.0
LYD3_k127_743711_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 384.0
LYD3_k127_743711_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000196 110.0
LYD3_k127_758834_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000236 158.0
LYD3_k127_758834_1 Acetyltransferase (GNAT) domain K18816 - 2.3.1.82 0.0000000000000000000000000000000006351 135.0
LYD3_k127_765113_0 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.0000000000000000000000000000000000000000008163 165.0
LYD3_k127_765113_1 maturation factor XdhC CoxF family - - - 0.0000000000000000000000000000000000005284 149.0
LYD3_k127_765113_2 4Fe-4S binding domain - - - 0.000000000000000000000000000001313 124.0
LYD3_k127_765189_0 Belongs to the PEP-utilizing enzyme family K01006,K01007 - 2.7.9.1,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003436 372.0
LYD3_k127_765189_1 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process - - - 0.0000000000000000000000001659 110.0
LYD3_k127_765189_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000173 102.0
LYD3_k127_771397_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008801 244.0
LYD3_k127_771397_1 Tetratricopeptide repeat - - - 0.00004831 55.0
LYD3_k127_776656_0 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009701 254.0
LYD3_k127_776656_1 YCII-related domain - - - 0.00000000000000000000000000000000000000000000003388 174.0
LYD3_k127_776656_2 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000002349 147.0
LYD3_k127_779145_0 glutamine synthetase K01915 - 6.3.1.2 1.445e-203 644.0
LYD3_k127_779145_1 metallopeptidase activity K06974 - - 0.000000000000000000000000000000000000000000000000000000000005037 220.0
LYD3_k127_781922_0 cystathionine gamma-synthase activity K01739,K01758,K01760,K01761 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004121,GO:0004123,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 498.0
LYD3_k127_781922_1 Transcriptional regulator, LysR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001122 245.0
LYD3_k127_787163_0 phosphorylase K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 300.0
LYD3_k127_787163_1 - - - - 0.0000000000000000000000000000000717 133.0
LYD3_k127_79481_0 serine threonine protein kinase K12132 - 2.7.11.1 2.057e-194 640.0
LYD3_k127_79481_1 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009891 379.0
LYD3_k127_79481_2 Involved in the tonB-independent uptake of proteins K08884,K12132 - 2.7.11.1 0.0000001054 54.0
LYD3_k127_797299_0 PFAM AMP-dependent synthetase and ligase K01897,K22319 - 6.1.3.1,6.2.1.3 1.097e-215 681.0
LYD3_k127_797299_1 Domain of unknown function (DUF1731) K07071 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 308.0
LYD3_k127_797299_2 Metal-dependent hydrolase - - - 0.000000000000000000000000000001645 123.0
LYD3_k127_797299_3 PFAM peptidase M15B and M15C DD-carboxypeptidase VanY endolysin - - - 0.0000000000000000000000000001437 127.0
LYD3_k127_797299_4 L,D-transpeptidase catalytic domain - - - 0.0000000000004858 81.0
LYD3_k127_797299_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00004552 50.0
LYD3_k127_827708_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 491.0
LYD3_k127_827708_1 PFAM OsmC family protein K04063 - - 0.000000000000000000000000000000000000000000166 162.0
LYD3_k127_827708_2 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000181 111.0
LYD3_k127_827708_3 Belongs to the thioredoxin family K03671 - - 0.000000000000000002814 85.0
LYD3_k127_829914_0 Formate--tetrahydrofolate ligase K01938 - 6.3.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000478 310.0
LYD3_k127_829914_1 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000009386 94.0
LYD3_k127_829914_2 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000006227 76.0
LYD3_k127_838670_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 464.0
LYD3_k127_838670_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 354.0
LYD3_k127_838670_2 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 320.0
LYD3_k127_838670_3 Protein of unknown function (DUF1385) - - - 0.000000000000000000000000000000000000000000000000000000000000000002266 241.0
LYD3_k127_838670_4 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000004629 117.0
LYD3_k127_838670_5 phosphoglycerate mutase K15634 - 5.4.2.12 0.0000000000000000000000000004775 121.0
LYD3_k127_838670_6 - - - - 0.000000000000000000000000005808 115.0
LYD3_k127_838670_7 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000002304 77.0
LYD3_k127_843293_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 302.0
LYD3_k127_843293_1 VanZ like family - - - 0.00000000000000000005459 95.0
LYD3_k127_857085_0 PFAM ABC transporter related K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 471.0
LYD3_k127_857085_1 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000908 367.0
LYD3_k127_858217_0 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 422.0
LYD3_k127_858217_1 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 345.0
LYD3_k127_858217_2 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000005236 188.0
LYD3_k127_858217_3 ribosomal large subunit export from nucleus - - - 0.000000000000000000000000000008882 124.0
LYD3_k127_863580_0 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007463 321.0
LYD3_k127_863580_1 Alanine dehydrogenase/PNT, N-terminal domain K00259 GO:0000286,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009653,GO:0009987,GO:0016054,GO:0016491,GO:0016638,GO:0019752,GO:0030154,GO:0030435,GO:0032502,GO:0043436,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048646,GO:0048856,GO:0048869,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.4.1.1 0.000000308 53.0
LYD3_k127_863580_2 TIGRFAM TonB family K03832 - - 0.000001418 56.0
LYD3_k127_865787_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005141 443.0
LYD3_k127_865787_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 358.0
LYD3_k127_871316_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 470.0
LYD3_k127_871316_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000001598 241.0
LYD3_k127_871316_2 Glyoxalase - - - 0.0000000000000000000000000000000000000000000004115 170.0
LYD3_k127_877079_0 Cytochrome C biogenesis protein transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 452.0
LYD3_k127_877079_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2 K00162 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 403.0
LYD3_k127_877079_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 378.0
LYD3_k127_919697_0 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 306.0
LYD3_k127_921564_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000002011 251.0
LYD3_k127_921564_1 Deoxyhypusine synthase K00809 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009987,GO:0010467,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019538,GO:0034038,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051604,GO:0071704,GO:1901564 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000001036 229.0
LYD3_k127_921564_2 Arginase family K01480 - 3.5.3.11 0.00000000000000000000005942 103.0
LYD3_k127_934927_0 GHMP kinases C terminal K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000003508 203.0
LYD3_k127_934927_1 Membrane - GO:0000003,GO:0000910,GO:0005575,GO:0005623,GO:0005886,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0019954,GO:0022402,GO:0022414,GO:0032505,GO:0043093,GO:0044464,GO:0051301,GO:0071944 - 0.0000000000000005353 87.0
LYD3_k127_939154_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 587.0
LYD3_k127_939154_1 Fibronectin type 3 domain K06882 - - 0.000000000000000000002244 103.0
LYD3_k127_939154_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000006758 93.0
LYD3_k127_943922_0 lipopolysaccharide transport K22110 - - 4.023e-251 785.0
LYD3_k127_946535_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 395.0
LYD3_k127_950195_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.871e-215 687.0
LYD3_k127_952070_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001438 258.0
LYD3_k127_952070_1 TIGRFAM succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 - - 0.0000000000000000000000000000000000000000006234 167.0
LYD3_k127_952070_2 HD domain - - - 0.00000000000000000000000000000000000000009414 159.0
LYD3_k127_954956_0 Reductase C-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 537.0
LYD3_k127_954956_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000003709 222.0
LYD3_k127_954956_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000005515 170.0
LYD3_k127_954956_3 - - - - 0.000000000000000000000000000000000001436 143.0
LYD3_k127_954956_4 HAD superfamily, subfamily IIIB (Acid phosphatase) - - - 0.0000002265 54.0
LYD3_k127_957293_0 Vault protein inter-alpha-trypsin domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 446.0
LYD3_k127_957293_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K11072 - 3.6.3.30,3.6.3.31 0.0000000000000000000007692 107.0
LYD3_k127_959144_0 Zinc metalloprotease (Elastase) K20274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 421.0
LYD3_k127_959144_1 HELICc2 K03722 - 3.6.4.12 0.00000000000000001143 85.0
LYD3_k127_961733_0 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003384 240.0
LYD3_k127_961733_1 HemY domain protein - - - 0.00000000000000000000000000000000005673 147.0
LYD3_k127_961733_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000002949 114.0
LYD3_k127_961733_3 cheY-homologous receiver domain K11443 - - 0.000000000000000000000003076 106.0
LYD3_k127_967626_0 Radical SAM - - - 5.972e-307 953.0
LYD3_k127_967626_1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 481.0
LYD3_k127_967626_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000004072 236.0
LYD3_k127_967626_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000001375 222.0
LYD3_k127_967626_4 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000001406 190.0
LYD3_k127_967626_5 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000001797 132.0
LYD3_k127_967626_6 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000001582 67.0
LYD3_k127_981843_0 Lytic transglycosylase catalytic K08307 - - 0.0000000000002175 83.0
LYD3_k127_981843_1 PFAM Forkhead-associated protein - - - 0.00000001251 67.0
LYD3_k127_981843_2 ATPase activity - - - 0.00000074 61.0
LYD3_k127_982913_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000002133 241.0
LYD3_k127_982913_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K07533 - 5.2.1.8 0.00000000000000314 86.0
LYD3_k127_986696_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000608 520.0
LYD3_k127_986696_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008774 369.0
LYD3_k127_986696_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 GO:0000166,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0017076,GO:0030554,GO:0032153,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 334.0
LYD3_k127_986696_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000001367 162.0
LYD3_k127_986696_4 4-hydroxythreonine-4-phosphate dehydrogenase activity K00097,K18076,K22024 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008614,GO:0008615,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0036094,GO:0042364,GO:0042802,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046184,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0050570,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.262,1.1.1.408,1.1.1.409,1.3.1.53 0.0000000000000000000000000000000000006327 145.0
LYD3_k127_986696_5 Hfq protein - - - 0.0000000000000000000003138 98.0
LYD3_k127_986696_6 Essential cell division protein K03589 - - 0.000000007272 66.0
LYD3_k127_988520_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003693 484.0
LYD3_k127_988520_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000004833 224.0
LYD3_k127_988520_2 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000000000000000000000001135 105.0
LYD3_k127_988520_3 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000001247 70.0
LYD3_k127_995485_0 PFAM Fatty acid hydroxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003173 254.0
LYD3_k127_995485_1 Haem-binding domain - - - 0.000000000000000000000005637 104.0