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Overview

ID MAG02050
Name LYD3_bin.14
Sample SMP0054
Taxonomy
Kingdom Bacteria
Phylum Nitrospirota
Class Thermodesulfovibrionia
Order Thermodesulfovibrionales
Family UBA6898
Genus Sulfobium
Species
Assembly information
Completeness (%) 92.03
Contamination (%) 3.38
GC content (%) 51.0
N50 (bp) 6,853
Genome size (bp) 2,538,470

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2531

Gene name Description KEGG GOs EC E-value Score Sequence
LYD3_k127_100812_0 response regulator receiver K02481,K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005672 393.0
LYD3_k127_100812_1 TonB dependent receptor K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002865 393.0
LYD3_k127_100812_2 radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 383.0
LYD3_k127_100812_3 Domains HAMP, HisKA, HATPase_c, REC K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005984 383.0
LYD3_k127_100812_4 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000001117 203.0
LYD3_k127_100812_5 Autoinducer binding domain K20334 - - 0.000000000000000615 80.0
LYD3_k127_1008289_0 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 318.0
LYD3_k127_1008289_1 Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) K03620,K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009813 288.0
LYD3_k127_1008289_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000002315 216.0
LYD3_k127_101506_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378,K13380 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 487.0
LYD3_k127_101506_1 PFAM 6-phosphogluconate dehydrogenase NAD-binding K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008216 386.0
LYD3_k127_101506_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006439 343.0
LYD3_k127_101506_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000000000000000229 164.0
LYD3_k127_101506_4 Cytochrome c K02275 GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.9.3.1 0.00005108 51.0
LYD3_k127_1020138_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 9.748e-209 657.0
LYD3_k127_1020138_1 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006972 491.0
LYD3_k127_1020138_2 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 404.0
LYD3_k127_1020138_3 Amino acid kinase family K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 364.0
LYD3_k127_1020138_4 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 354.0
LYD3_k127_1020138_5 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002948 276.0
LYD3_k127_1020138_6 Formylmethanofuran dehydrogenase, subunit e K11261 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000002373 234.0
LYD3_k127_1020138_7 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000000000000000000000000007069 232.0
LYD3_k127_1020138_8 PFAM phosphoesterase RecJ domain protein - - - 0.000000000000000000000000000000000000000000000001004 186.0
LYD3_k127_1031778_0 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 484.0
LYD3_k127_1031778_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 426.0
LYD3_k127_1031778_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 397.0
LYD3_k127_1031778_3 pfam abc K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 353.0
LYD3_k127_1031778_4 ABC transporter related K01996 - - 0.0000000000000000000000000000000000000000000005301 171.0
LYD3_k127_1076436_0 Penicillin-binding Protein dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 621.0
LYD3_k127_1076436_1 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 458.0
LYD3_k127_1076436_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 326.0
LYD3_k127_1076436_3 MraZ protein, putative antitoxin-like K03925 - - 0.000001791 50.0
LYD3_k127_1086638_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 434.0
LYD3_k127_1086638_1 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 303.0
LYD3_k127_1086638_2 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005865 279.0
LYD3_k127_1086638_3 nickel cation binding K04651,K19640 - - 0.0000000000000000000000000000001784 127.0
LYD3_k127_1086638_4 YtxH-like protein - - - 0.0000000000000000000000001584 109.0
LYD3_k127_111542_0 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 336.0
LYD3_k127_111542_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000002007 222.0
LYD3_k127_111542_2 PFAM Roadblock LC7 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000008982 213.0
LYD3_k127_111542_3 nucleotide metabolic process - - - 0.000000000000000000000000000000000000002268 155.0
LYD3_k127_1124399_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 372.0
LYD3_k127_1124399_1 Archaeal transcriptional regulator TrmB - - - 0.000000000000000000000000000000000000000006036 165.0
LYD3_k127_1124399_3 - - - - 0.0000005263 51.0
LYD3_k127_112588_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 325.0
LYD3_k127_112588_1 belongs to the thioredoxin family K14949,K20543 - 2.7.11.1 0.0000000000000000002503 98.0
LYD3_k127_1133456_0 e3 binding domain K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 483.0
LYD3_k127_1133456_1 Transketolase, pyrimidine binding domain K00162,K00167 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 466.0
LYD3_k127_1133456_2 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 445.0
LYD3_k127_1133456_3 Permease MlaE K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 355.0
LYD3_k127_1133456_4 AAA domain, putative AbiEii toxin, Type IV TA system K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008684 323.0
LYD3_k127_1133456_5 PFAM VacJ family lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000003964 220.0
LYD3_k127_1133456_6 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000001465 189.0
LYD3_k127_1133456_7 intermembrane phospholipid transfer K07323 - - 0.0000000000000000000000000000000000000000000000002354 183.0
LYD3_k127_1133456_8 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000003982 179.0
LYD3_k127_1133457_0 CoA binding domain K09181 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 522.0
LYD3_k127_1133457_1 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 301.0
LYD3_k127_1133457_2 e3 binding domain K00627 - 2.3.1.12 0.0000000000000000000000000000000000429 134.0
LYD3_k127_1133457_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000008623 121.0
LYD3_k127_11506_0 Spermine/spermidine synthase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 528.0
LYD3_k127_11506_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 505.0
LYD3_k127_11506_2 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003322 359.0
LYD3_k127_11506_3 Exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007443 284.0
LYD3_k127_11506_4 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000001722 126.0
LYD3_k127_11506_5 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000001114 89.0
LYD3_k127_116040_0 Belongs to the sulfate adenylyltransferase family K00958,K13811 - 2.7.1.25,2.7.7.4 9.149e-205 643.0
LYD3_k127_116040_1 reductase, beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000005828 228.0
LYD3_k127_1169258_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 436.0
LYD3_k127_1169258_1 Protein of unknown function (DUF1810) - - - 0.00000000000000000000000000000000000000000000000000002948 191.0
LYD3_k127_1169258_2 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000001374 82.0
LYD3_k127_1184440_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299,K22341 - 1.17.1.10,1.17.1.11,1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 563.0
LYD3_k127_1184440_1 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 534.0
LYD3_k127_1184440_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005486 522.0
LYD3_k127_1184440_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000003169 252.0
LYD3_k127_1184440_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000001217 200.0
LYD3_k127_1184440_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000901 183.0
LYD3_k127_1184440_6 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000003889 159.0
LYD3_k127_1184440_7 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000001118 149.0
LYD3_k127_1184440_8 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 - 1.6.5.3 0.000000000000000000000000000000000001352 146.0
LYD3_k127_118471_0 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 334.0
LYD3_k127_118471_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006158 279.0
LYD3_k127_118471_2 Uncharacterized ACR, COG1678 - - - 0.00000000000000000000000000000000001421 144.0
LYD3_k127_1186526_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000001365 222.0
LYD3_k127_1186526_1 response to copper ion - - - 0.000000000000000000005216 104.0
LYD3_k127_1186526_2 Smr domain - - - 0.000001791 50.0
LYD3_k127_121098_0 Cytochrome b/b6/petB K00412,K03888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 340.0
LYD3_k127_121098_1 Universal stress protein family - - - 0.00000000000000000000000000000000000000000005266 165.0
LYD3_k127_121098_2 Universal stress protein family - - - 0.00000000000000000000000000000000000000003184 156.0
LYD3_k127_121098_3 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.0000000000000000000000000000000001608 138.0
LYD3_k127_121098_4 TIGRFAM 6-phosphogluconate dehydrogenase, decarboxylating K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000004939 101.0
LYD3_k127_1235605_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 1.422e-215 677.0
LYD3_k127_1235605_1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 316.0
LYD3_k127_125451_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 572.0
LYD3_k127_125451_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 387.0
LYD3_k127_125451_10 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000004903 203.0
LYD3_k127_125451_11 HNH nucleases - - - 0.00000000000000000000000000000000000000000000001171 174.0
LYD3_k127_125451_12 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000004179 170.0
LYD3_k127_125451_13 Adenylylsulphate kinase K00860 - 2.7.1.25 0.00000000000000000000000000000000000000298 152.0
LYD3_k127_125451_14 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000002145 108.0
LYD3_k127_125451_15 isomerase activity K01821 - 5.3.2.6 0.0000000000000000000000001572 109.0
LYD3_k127_125451_16 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000002821 97.0
LYD3_k127_125451_17 Diguanylate cyclase - - - 0.000000000000000001695 100.0
LYD3_k127_125451_18 GAF domain - - - 0.0000000000000001103 94.0
LYD3_k127_125451_19 Belongs to the peptidase M48B family - - - 0.0000003456 54.0
LYD3_k127_125451_2 Mur ligase, middle domain protein K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 347.0
LYD3_k127_125451_20 Histidine kinase K02660,K11525 - - 0.0002142 54.0
LYD3_k127_125451_3 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 341.0
LYD3_k127_125451_4 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005616 288.0
LYD3_k127_125451_5 TIGRFAM riboflavin biosynthesis protein RibF K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 289.0
LYD3_k127_125451_6 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009986 286.0
LYD3_k127_125451_7 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001039 266.0
LYD3_k127_125451_8 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009859 248.0
LYD3_k127_125451_9 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000000000000000000000000000000000144 236.0
LYD3_k127_1260557_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 4.154e-198 624.0
LYD3_k127_1260557_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 492.0
LYD3_k127_1260557_2 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000007251 261.0
LYD3_k127_1260557_3 Peptidase family M50 - - - 0.000000000000000003686 87.0
LYD3_k127_126127_0 Domain in cystathionine beta-synthase and other proteins. K07182 - - 5.759e-256 804.0
LYD3_k127_126127_1 Sigma-54 interaction domain K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 472.0
LYD3_k127_126127_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.00000000000000000000000000000000004459 143.0
LYD3_k127_126127_3 ATP-binding region ATPase domain protein - - - 0.00000000000000000005198 90.0
LYD3_k127_1266443_0 Biotin-lipoyl like K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007896 388.0
LYD3_k127_1266443_1 NMT1/THI5 like K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 350.0
LYD3_k127_1266443_2 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 330.0
LYD3_k127_1266443_3 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000004943 202.0
LYD3_k127_1266443_4 cheY-homologous receiver domain - - - 0.000000000000000000002044 98.0
LYD3_k127_1266443_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789,K18138 - - 0.0000000000000004539 78.0
LYD3_k127_128089_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1535.0
LYD3_k127_128089_1 Phosphoglycerate kinase K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000086 615.0
LYD3_k127_128089_10 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000009089 219.0
LYD3_k127_128089_11 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000001919 223.0
LYD3_k127_128089_12 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000001964 201.0
LYD3_k127_128089_13 MGS-like domain - - - 0.0000000000000000000000000000000000000000000000000004354 192.0
LYD3_k127_128089_14 PFAM Uncharacterised protein family (UPF0153) - - - 0.0000000000000000000000000000000000000000001224 166.0
LYD3_k127_128089_15 - - - - 0.000000000000000000000001892 111.0
LYD3_k127_128089_16 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000002018 85.0
LYD3_k127_128089_2 Acetyl-coenzyme A transporter 1 K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009251 548.0
LYD3_k127_128089_3 PFAM phosphofructokinase K00850 - 2.7.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 544.0
LYD3_k127_128089_4 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009144 503.0
LYD3_k127_128089_5 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 389.0
LYD3_k127_128089_6 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 345.0
LYD3_k127_128089_7 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 312.0
LYD3_k127_128089_8 Protein of unknown function (DUF1460) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004248 259.0
LYD3_k127_128089_9 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000001058 243.0
LYD3_k127_134498_0 Dehydratase family K01687 - 4.2.1.9 7.76e-265 824.0
LYD3_k127_134498_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000001587 222.0
LYD3_k127_134498_2 Protein of unknown function (DUF465) K09794 - - 0.0000000000000000001223 90.0
LYD3_k127_1348110_0 Molybdopterin oxidoreductase Fe4S4 domain K00123,K05299,K22341 - 1.17.1.10,1.17.1.11,1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000287 298.0
LYD3_k127_1348110_1 (Rhomboid) family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000000003583 238.0
LYD3_k127_1348110_2 PHP-associated K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000003037 225.0
LYD3_k127_1348110_3 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000008521 180.0
LYD3_k127_1348110_4 zinc-ribbon domain - - - 0.000000000000000000000000000000000000000000005968 181.0
LYD3_k127_1348110_5 PFAM ATP-binding region, ATPase domain protein - - - 0.0000000000000000000000000000000000000004356 158.0
LYD3_k127_1348110_6 DRTGG domain - - - 0.000000000000000000000000000004415 124.0
LYD3_k127_1348110_7 DRTGG domain protein - - - 0.00000000000000000000000001631 112.0
LYD3_k127_1366340_0 O-methyltransferase activity - - - 5.929e-209 668.0
LYD3_k127_1366340_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000427 440.0
LYD3_k127_1366340_2 Thiamine pyrophosphate enzyme, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 377.0
LYD3_k127_1366340_3 4 iron, 4 sulfur cluster binding K07139 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464,GO:0048037,GO:0051536,GO:0051539,GO:0051540 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 314.0
LYD3_k127_1366340_4 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000000000000000000000000000000000000000397 207.0
LYD3_k127_1366340_5 lyase activity - - - 0.000000000000000000000000000000000000000000000000000000007679 205.0
LYD3_k127_1366340_6 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000003091 198.0
LYD3_k127_1366340_7 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000004961 154.0
LYD3_k127_1366340_8 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.00000000000000000000000000891 115.0
LYD3_k127_1366646_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 GO:0000166,GO:0003674,GO:0003824,GO:0003951,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006766,GO:0006767,GO:0006769,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008976,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009820,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 314.0
LYD3_k127_1366646_1 CHASE K02488,K21009 - 2.7.7.65 0.000000000000000000000000000000000000002833 150.0
LYD3_k127_1366646_2 PFAM CBS domain - - - 0.000000000000000000000000000000000004654 141.0
LYD3_k127_1366646_3 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000001554 137.0
LYD3_k127_1366646_4 Hydrolase, P-loop family K06925 - - 0.0000000000000000000000002948 110.0
LYD3_k127_1368014_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 572.0
LYD3_k127_1368014_1 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 322.0
LYD3_k127_1368014_2 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000003688 201.0
LYD3_k127_1368014_3 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000001233 199.0
LYD3_k127_138044_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 3.229e-295 915.0
LYD3_k127_138044_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009728 370.0
LYD3_k127_138044_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 355.0
LYD3_k127_138044_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 312.0
LYD3_k127_138044_4 Domain of unknown function (DUF4337) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002939 247.0
LYD3_k127_138044_5 nuclease K00590,K01174 GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575 2.1.1.113,3.1.31.1 0.0000000000000000000000000000000000000000001443 168.0
LYD3_k127_138044_6 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000005569 134.0
LYD3_k127_138044_7 Transmembrane exosortase (Exosortase_EpsH) - - - 0.0000000000008754 74.0
LYD3_k127_1385086_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005691 415.0
LYD3_k127_1385086_1 FeS cluster assembly scaffold protein NifU K04488 - - 0.000000000000000000000000000000000000000000000000000006648 192.0
LYD3_k127_1385086_2 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000001289 136.0
LYD3_k127_1385086_3 Sulfurtransferase TusA - - - 0.00000000000000000000006548 99.0
LYD3_k127_13969_0 export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 288.0
LYD3_k127_13969_1 Putative beta-barrel porin 2 K20920 - - 0.0000000000000000000000000000000000000000000000000000000000000000001264 242.0
LYD3_k127_13969_2 G-rich domain on putative tyrosine kinase K16554 - - 0.0003881 44.0
LYD3_k127_1399639_0 Belongs to the UbiD family K03182,K16239 - 4.1.1.61,4.1.1.98 1.245e-211 668.0
LYD3_k127_1399639_1 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 591.0
LYD3_k127_1399639_2 TIGRFAM cysteine K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 423.0
LYD3_k127_1399639_3 protein secretion K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000882 318.0
LYD3_k127_1399639_4 Cold shock K03704 - - 0.000000000000000000000000002764 111.0
LYD3_k127_1399639_6 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000004374 102.0
LYD3_k127_1399639_7 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000409 65.0
LYD3_k127_1399639_8 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000002403 55.0
LYD3_k127_1400408_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1703.0
LYD3_k127_1400408_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 5.039e-196 619.0
LYD3_k127_1400408_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 1.432e-194 613.0
LYD3_k127_1400408_3 Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily K03615 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 493.0
LYD3_k127_1400408_4 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005299 353.0
LYD3_k127_1400408_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000006186 239.0
LYD3_k127_1400408_6 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000001818 125.0
LYD3_k127_1400408_7 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000004465 97.0
LYD3_k127_1414821_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1176.0
LYD3_k127_1414821_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 593.0
LYD3_k127_1414821_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004695 572.0
LYD3_k127_1414821_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 439.0
LYD3_k127_1414821_4 PFAM PfkB K00856 - 2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 378.0
LYD3_k127_1414821_5 COG3209 Rhs family protein - - - 0.000000000000000000000001262 115.0
LYD3_k127_1414821_6 SMART Tetratricopeptide - - - 0.00000000000000000000000234 109.0
LYD3_k127_1439038_0 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 1.085e-213 668.0
LYD3_k127_1439038_1 Metalloenzyme superfamily K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008431 527.0
LYD3_k127_1439038_2 K transport systems K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 381.0
LYD3_k127_1439038_3 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 322.0
LYD3_k127_1439038_4 ACT domain K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000008859 262.0
LYD3_k127_1439038_5 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000001161 261.0
LYD3_k127_1439038_6 ThiS family K03636 - - 0.00000000000000000000000000000000113 132.0
LYD3_k127_1439038_7 NIL - - - 0.000000000000000000000000003705 114.0
LYD3_k127_1439038_8 LemA family K03744 - - 0.0000002624 57.0
LYD3_k127_1447535_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000283 205.0
LYD3_k127_1447535_1 HEAT repeat - - - 0.000000000000000000000000000000000000001916 156.0
LYD3_k127_1447535_2 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000001333 120.0
LYD3_k127_1467151_0 Homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 539.0
LYD3_k127_1467151_1 Aminotransferase class I and II K14261 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 418.0
LYD3_k127_1474386_0 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 490.0
LYD3_k127_1474386_1 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 415.0
LYD3_k127_1474386_2 TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001337 294.0
LYD3_k127_1474386_3 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000001824 254.0
LYD3_k127_1474386_4 Bacterial membrane protein, YfhO - - - 0.00000000000000000000000000000000000000000001403 186.0
LYD3_k127_1474386_5 Cytochrome c7 and related cytochrome c - - - 0.00003013 57.0
LYD3_k127_1483139_0 Elongation factor SelB, winged helix K03833 - - 4.076e-210 670.0
LYD3_k127_1483139_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0006139,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097056,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901576 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 445.0
LYD3_k127_1483139_2 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000005349 259.0
LYD3_k127_1483938_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.0 1080.0
LYD3_k127_1483938_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 1.076e-232 730.0
LYD3_k127_1483938_2 cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000000002128 169.0
LYD3_k127_1493253_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003473 347.0
LYD3_k127_1493253_1 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 299.0
LYD3_k127_1493253_2 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.00000000000000000000000000000000000000000000000000001019 199.0
LYD3_k127_1511094_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 327.0
LYD3_k127_1511094_1 ABC transporter K09817 - - 0.00000000000000000000000000000000000000000000000000000000000000000007474 241.0
LYD3_k127_1511094_2 PFAM periplasmic solute binding protein K09815 - - 0.00000000000000000000000000000000000000000000000000000000000000004564 233.0
LYD3_k127_1511094_3 ABC 3 transport family K09816,K09819 - - 0.000000000000000000000000000000000000000000000000000000001486 209.0
LYD3_k127_1511094_4 Domain of unknown function (DUF1992) - - - 0.0000000000000000000004258 97.0
LYD3_k127_1511094_6 PFAM Peptidase M22, glycoprotease K01409,K14742 - 2.3.1.234 0.0000006536 54.0
LYD3_k127_1511582_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008966,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019538,GO:0034641,GO:0034654,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0046777,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 529.0
LYD3_k127_1511582_1 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 406.0
LYD3_k127_1511582_10 YbbR-like protein - - - 0.00005225 54.0
LYD3_k127_1511582_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 323.0
LYD3_k127_1511582_3 Protein of unknown function (DUF520) K09767 - - 0.0000000000000000000000000000000000000000000000000000001572 200.0
LYD3_k127_1511582_4 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000745 168.0
LYD3_k127_1511582_5 CO dehydrogenase acetyl-CoA synthase gamma subunit (Corrinoid Fe-S protein) - - - 0.00000000000000000000000000000000000000001173 162.0
LYD3_k127_1511582_6 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000002574 156.0
LYD3_k127_1511582_7 NAD(P)-binding Rossmann-like domain - - - 0.000000000000000000000000000000000000001723 149.0
LYD3_k127_1511582_8 - - - - 0.000000000000000000000000003437 111.0
LYD3_k127_1511582_9 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00002803 55.0
LYD3_k127_1532902_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 2.665e-203 639.0
LYD3_k127_1532902_1 alcohol dehydrogenase K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 418.0
LYD3_k127_1532902_10 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000002253 91.0
LYD3_k127_1532902_11 - - - - 0.0000000000000008292 81.0
LYD3_k127_1532902_2 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 403.0
LYD3_k127_1532902_3 Glucose dehydrogenase C-terminus K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 392.0
LYD3_k127_1532902_4 PFAM ResB family protein K07399 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 383.0
LYD3_k127_1532902_5 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 367.0
LYD3_k127_1532902_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 357.0
LYD3_k127_1532902_7 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009809 296.0
LYD3_k127_1532902_8 NmrA-like family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000002787 203.0
LYD3_k127_1532902_9 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000006242 141.0
LYD3_k127_1538696_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1028.0
LYD3_k127_1538696_1 spermidine synthase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001735 291.0
LYD3_k127_1538696_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002184 272.0
LYD3_k127_1538696_3 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000006159 251.0
LYD3_k127_1538696_4 Cytochrome c K12263 - - 0.0000000000000006793 83.0
LYD3_k127_1538696_5 Protein of unknown function (DUF1573) - - - 0.00001587 49.0
LYD3_k127_1548263_0 Heat shock 70 kDa protein K04043 - - 0.0 1019.0
LYD3_k127_1548263_1 diaminopimelate decarboxylase activity K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 492.0
LYD3_k127_1548263_10 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008754 275.0
LYD3_k127_1548263_11 SEC-C motif K09858 - - 0.00000000000000000000000000000000000000000000000000000000000009827 217.0
LYD3_k127_1548263_12 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000004926 218.0
LYD3_k127_1548263_13 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000005522 180.0
LYD3_k127_1548263_14 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000002102 174.0
LYD3_k127_1548263_15 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000005126 150.0
LYD3_k127_1548263_16 His Kinase A (phosphoacceptor - - - 0.000000000003938 78.0
LYD3_k127_1548263_17 integral membrane protein - - - 0.00000607 58.0
LYD3_k127_1548263_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 480.0
LYD3_k127_1548263_3 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 449.0
LYD3_k127_1548263_4 spermidine synthase activity K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 418.0
LYD3_k127_1548263_5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 416.0
LYD3_k127_1548263_6 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 375.0
LYD3_k127_1548263_7 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 354.0
LYD3_k127_1548263_8 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 308.0
LYD3_k127_1548263_9 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 292.0
LYD3_k127_1559095_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 1.958e-200 632.0
LYD3_k127_1559095_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007802 484.0
LYD3_k127_1559095_2 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 379.0
LYD3_k127_1559095_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000001092 159.0
LYD3_k127_1559095_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000006899 137.0
LYD3_k127_1559095_5 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000001547 87.0
LYD3_k127_1564146_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008567 436.0
LYD3_k127_1564146_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000004902 207.0
LYD3_k127_1564146_2 AhpC/TSA family K03386 - 1.11.1.15 0.000000000000002557 76.0
LYD3_k127_1564146_3 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.000000000000004975 76.0
LYD3_k127_15692_0 Sodium/calcium exchanger protein K07301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 358.0
LYD3_k127_15692_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006395 312.0
LYD3_k127_15692_2 AMP binding - - - 0.000000000000000000000000000000000000000551 160.0
LYD3_k127_15692_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000009998 126.0
LYD3_k127_15692_4 - - - - 0.0000000000000000006593 89.0
LYD3_k127_1580077_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 9.541e-277 859.0
LYD3_k127_1580077_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000003847 139.0
LYD3_k127_1581441_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 7.273e-319 990.0
LYD3_k127_1581441_1 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 466.0
LYD3_k127_1581441_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003762 378.0
LYD3_k127_1581441_3 cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005545 349.0
LYD3_k127_1581441_4 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000005603 78.0
LYD3_k127_15911_0 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 519.0
LYD3_k127_15911_1 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 409.0
LYD3_k127_15911_2 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001664 223.0
LYD3_k127_15911_3 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000002913 203.0
LYD3_k127_15911_4 - - - - 0.000000000000000001242 88.0
LYD3_k127_15911_5 Universal stress protein family K07090 - - 0.000000000007863 65.0
LYD3_k127_1595964_0 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004613 427.0
LYD3_k127_1595964_1 Putative transmembrane protein (Alph_Pro_TM) - - - 0.0000000000000000000000000000000000000000000001107 178.0
LYD3_k127_1595964_2 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.000000000000000000000000000001132 132.0
LYD3_k127_1595964_3 Sigma-54 factor interaction domain-containing protein K07713 - - 0.00000000000000000000000005581 110.0
LYD3_k127_1595964_4 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00000000007154 69.0
LYD3_k127_1600020_0 PFAM ATP adenylyltransferase K00988 - 2.7.7.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 332.0
LYD3_k127_1600020_1 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.00000000000000000000006477 100.0
LYD3_k127_1600020_2 lysyltransferase activity K07027 - - 0.00000000000002745 76.0
LYD3_k127_1653092_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 413.0
LYD3_k127_1664931_0 Polysulphide reductase, NrfD - - - 1.973e-195 616.0
LYD3_k127_1664931_1 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008601 436.0
LYD3_k127_1664931_2 HMGL-like K01666 - 4.1.3.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 397.0
LYD3_k127_1664931_3 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 318.0
LYD3_k127_1664931_4 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000007308 233.0
LYD3_k127_1664931_5 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000002743 160.0
LYD3_k127_1664931_6 Domain of unknown function DUF302 - - - 0.0000000000000000000000000004049 126.0
LYD3_k127_1680345_0 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008483 363.0
LYD3_k127_1680345_1 LysM domain K01449,K19223 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000009317 258.0
LYD3_k127_1680345_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000004271 186.0
LYD3_k127_1680345_3 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000000000001501 130.0
LYD3_k127_1680345_4 PFAM Rubredoxin-type Fe(Cys)4 protein - GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0017144,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0055114,GO:0072592 - 0.000000000000000000000001011 104.0
LYD3_k127_1680345_5 acr, cog1993 K09137 - - 0.0000000000000000000001323 100.0
LYD3_k127_1680345_6 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.00000000008138 63.0
LYD3_k127_169057_0 DNA polymerase K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 458.0
LYD3_k127_169057_1 DsrE/DsrF/DrsH-like family - - - 0.000000000001429 68.0
LYD3_k127_169340_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1057.0
LYD3_k127_169340_1 diguanylate cyclase - - - 0.0000000286 63.0
LYD3_k127_169596_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 517.0
LYD3_k127_169596_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 446.0
LYD3_k127_169596_2 ATPases associated with a variety of cellular activities K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001836 286.0
LYD3_k127_169596_3 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004255 273.0
LYD3_k127_169596_4 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.000000000000000000000000000000000000000000000000004032 186.0
LYD3_k127_169596_5 OstA-like protein K09774 - - 0.0000000000000000000000000000000000004912 144.0
LYD3_k127_169596_6 Lipopolysaccharide-assembly, LptC-related - - - 0.0000917 51.0
LYD3_k127_1716450_0 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 370.0
LYD3_k127_1716450_1 Stage II sporulation protein M - - - 0.0000000000000000001901 91.0
LYD3_k127_1716450_2 DsrE/DsrF-like family - - - 0.00000001203 56.0
LYD3_k127_1718490_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1259.0
LYD3_k127_1718490_1 Belongs to the PstS family K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003643 476.0
LYD3_k127_1718490_2 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007076 399.0
LYD3_k127_1718490_3 Signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 357.0
LYD3_k127_1718490_4 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000006199 207.0
LYD3_k127_1718490_5 Transcription factor zinc-finger K09981 - - 0.0000000000000000000000000000000001093 135.0
LYD3_k127_1718490_6 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000003471 87.0
LYD3_k127_1725797_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004147 445.0
LYD3_k127_1725797_1 Sigma-54 interaction domain K07714 - - 0.0000000000000000000000000000000000006336 143.0
LYD3_k127_1730226_0 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 6.936e-274 864.0
LYD3_k127_1730226_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 555.0
LYD3_k127_1730226_2 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 535.0
LYD3_k127_1730226_3 HlyD family secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003374 497.0
LYD3_k127_1730226_4 Putative glycosyl hydrolase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 481.0
LYD3_k127_1730226_5 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 357.0
LYD3_k127_1730226_6 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008249 340.0
LYD3_k127_1730226_7 Protein of unknown function (DUF3641) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 336.0
LYD3_k127_1730226_8 CHASE K02488,K21009 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000005797 226.0
LYD3_k127_1740758_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 347.0
LYD3_k127_1740758_1 COG1194 A G-specific DNA glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 291.0
LYD3_k127_1740758_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.00000000008532 63.0
LYD3_k127_1784270_0 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000000000000000000000000001303 239.0
LYD3_k127_1784270_1 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000007814 223.0
LYD3_k127_1784270_2 Domain of unknown function (DUF3842) - - - 0.0000000000000000000000000000000000000000000000003183 179.0
LYD3_k127_1784270_3 peptidyl-prolyl isomerase K07533 - 5.2.1.8 0.000000005083 69.0
LYD3_k127_1784270_4 helix_turn_helix, Lux Regulon - - - 0.0000001373 60.0
LYD3_k127_1784270_5 peptidylprolyl isomerase K03770 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0008150,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031233,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0061077,GO:0071575,GO:0071944,GO:0098552 5.2.1.8 0.00001638 57.0
LYD3_k127_1784270_6 Tetratricopeptide repeat - - - 0.0002643 53.0
LYD3_k127_1786148_0 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 385.0
LYD3_k127_1786148_1 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.000000000000000000000000000000000000000000000000000000000000000006009 227.0
LYD3_k127_180375_0 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 1.847e-227 715.0
LYD3_k127_180375_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 560.0
LYD3_k127_180375_10 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000003516 158.0
LYD3_k127_180375_11 deoxyhypusine monooxygenase activity K05384,K05386 - - 0.00000000000000000008651 94.0
LYD3_k127_180375_12 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000005448 80.0
LYD3_k127_180375_14 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000007335 54.0
LYD3_k127_180375_15 - - - - 0.0000001389 53.0
LYD3_k127_180375_16 Evidence 5 No homology to any previously reported sequences - - - 0.00000152 50.0
LYD3_k127_180375_17 Zn-ribbon protein possibly nucleic acid-binding - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000051 54.0
LYD3_k127_180375_2 Evidence 2b Function of strongly homologous gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 542.0
LYD3_k127_180375_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009524 525.0
LYD3_k127_180375_4 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 525.0
LYD3_k127_180375_5 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 332.0
LYD3_k127_180375_6 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000012 215.0
LYD3_k127_180375_7 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000001985 201.0
LYD3_k127_180375_8 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000009839 203.0
LYD3_k127_180375_9 arabinan catabolic process K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000001159 175.0
LYD3_k127_181745_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 407.0
LYD3_k127_181745_1 metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 373.0
LYD3_k127_181745_2 TIGRFAM peptidase T-like protein K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000222 287.0
LYD3_k127_181745_3 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008242 284.0
LYD3_k127_181745_4 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001075 252.0
LYD3_k127_181745_5 Vitamin K epoxide reductase family - - - 0.0000000000000000000003467 103.0
LYD3_k127_181745_6 PAS domain containing protein K03406,K13924,K14986 - 2.1.1.80,2.7.13.3,3.1.1.61 0.000000000000000000008115 94.0
LYD3_k127_181745_7 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.00000000000000152 86.0
LYD3_k127_181745_8 Putative zinc- or iron-chelating domain K06940 - - 0.0000171 48.0
LYD3_k127_1824432_0 Pyridoxal phosphate biosynthetic protein PdxA K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005674 347.0
LYD3_k127_1824432_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000003925 254.0
LYD3_k127_1824432_2 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000002296 240.0
LYD3_k127_1824432_3 PFAM regulatory protein, ArsR - - - 0.00000000000000000000000000000000006108 141.0
LYD3_k127_1824432_4 - - - - 0.0000000000000000000000007718 106.0
LYD3_k127_1834468_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.701e-203 639.0
LYD3_k127_1834468_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.186e-198 624.0
LYD3_k127_1834468_2 AMP binding - - - 0.0000000000000003247 80.0
LYD3_k127_1834468_3 PKD domain - - - 0.00008614 55.0
LYD3_k127_1834468_4 - - - - 0.0003484 53.0
LYD3_k127_1849872_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 570.0
LYD3_k127_1849872_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.000000000000000000000000000000000000358 145.0
LYD3_k127_1849872_2 Preprotein translocase subunit K03210 - - 0.00000000000000000000000000000001971 129.0
LYD3_k127_1888487_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008609 593.0
LYD3_k127_1888487_1 Protein of unknown function (DUF3443) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 423.0
LYD3_k127_1888487_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006735 285.0
LYD3_k127_1888487_3 prenyltransferase activity K03186,K16875 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008694,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.5.1.129 0.0000000000000000000000000000000000000000000000000003355 187.0
LYD3_k127_1888487_4 Protein of unknown function (DUF2844) - - - 0.00000000000000000000000000000000000000000002065 167.0
LYD3_k127_1888487_5 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000001989 168.0
LYD3_k127_1888487_6 NMT1/THI5 like K02051 - - 0.000000000000000000000000000000000003137 150.0
LYD3_k127_1888487_7 PFAM Cold-shock protein DNA-binding K03704 - - 0.000000000000000000000005153 104.0
LYD3_k127_1888487_8 - - - - 0.0000000000003655 72.0
LYD3_k127_1916660_0 TIGRFAM ATP-dependent helicase HrpB K03579 - 3.6.4.13 1.255e-289 911.0
LYD3_k127_1916660_1 Fe-S-cluster oxidoreductase K06940 - - 0.0000000000000000000000000007182 114.0
LYD3_k127_1916660_2 - - - - 0.00000000000000000000000003347 112.0
LYD3_k127_1916660_3 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000889 58.0
LYD3_k127_1916660_4 peptidyl-histidine dephosphorylation K01112 GO:0000003,GO:0002682,GO:0002683,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0004721,GO:0005246,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007548,GO:0008150,GO:0008152,GO:0008200,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010647,GO:0010648,GO:0010817,GO:0016247,GO:0016248,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019855,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0032024,GO:0032502,GO:0032879,GO:0032880,GO:0032956,GO:0032970,GO:0033043,GO:0035774,GO:0035971,GO:0036211,GO:0040012,GO:0040017,GO:0042578,GO:0043086,GO:0043170,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044325,GO:0044424,GO:0044444,GO:0044464,GO:0046883,GO:0046887,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050708,GO:0050714,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050854,GO:0050856,GO:0050858,GO:0050860,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051222,GO:0051223,GO:0051270,GO:0051272,GO:0051338,GO:0051339,GO:0051348,GO:0051350,GO:0051493,GO:0060341,GO:0061178,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0071704,GO:0090087,GO:0090276,GO:0090277,GO:0098772,GO:0099106,GO:0101006,GO:0140096,GO:1901564,GO:1903530,GO:1903532,GO:1904951,GO:2000145,GO:2000147,GO:2000249,GO:2000983,GO:2000984 3.9.1.3 0.0002712 49.0
LYD3_k127_193109_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003011 413.0
LYD3_k127_193109_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000004248 235.0
LYD3_k127_1941619_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 483.0
LYD3_k127_1941619_1 Belongs to the TrpC family K01609 - 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000006662 248.0
LYD3_k127_1941619_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03832 - - 0.0000000000007599 68.0
LYD3_k127_1960339_0 Aminotransferase class-III K01845 - 5.4.3.8 1.746e-202 638.0
LYD3_k127_1960339_1 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000519 213.0
LYD3_k127_1960339_2 heat shock protein binding - - - 0.00000000000000000000000000000000001726 148.0
LYD3_k127_197644_0 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.0000000000000000000000000005855 124.0
LYD3_k127_197644_1 Thioredoxin K03671 - - 0.000000000000005087 83.0
LYD3_k127_197644_2 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000008601 71.0
LYD3_k127_197644_3 ubiE/COQ5 methyltransferase family - - - 0.000000004842 66.0
LYD3_k127_1977496_0 Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 560.0
LYD3_k127_1977496_1 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 557.0
LYD3_k127_1977496_2 Acid phosphatase homologues K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009111 501.0
LYD3_k127_1977496_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 461.0
LYD3_k127_1977496_4 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 286.0
LYD3_k127_1977496_5 Helicase K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000003027 170.0
LYD3_k127_1977496_6 lysyltransferase activity K07027 - - 0.00000000000000000000000000000000000000633 157.0
LYD3_k127_1977496_7 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.0000000000000000000000000003684 120.0
LYD3_k127_1977496_8 GDP-mannose mannosyl hydrolase activity - - - 0.00000000000000000002306 93.0
LYD3_k127_1979545_0 Chromate transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 485.0
LYD3_k127_1979545_1 Uncharacterized protein containing a ferredoxin domain (DUF2148) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002119 265.0
LYD3_k127_1979545_2 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001272 260.0
LYD3_k127_1979545_3 Chromate resistance exported protein - - - 0.00000000000002688 74.0
LYD3_k127_1990797_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 550.0
LYD3_k127_1990797_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000004605 242.0
LYD3_k127_1990797_2 Phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.000000000000000000000000005615 114.0
LYD3_k127_2001457_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.0 1086.0
LYD3_k127_2001457_1 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000869 314.0
LYD3_k127_2001457_2 Protein of unknown function (DUF2442) - - - 0.00000000000000000000000000000002641 127.0
LYD3_k127_2001457_3 conserved protein (DUF2249) K07322 - - 0.0000000000000000000000000009522 114.0
LYD3_k127_2001457_5 - - - - 0.00000128 54.0
LYD3_k127_2010848_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 2.298e-259 806.0
LYD3_k127_2010848_1 acetyl-CoA catabolic process K00197 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006819 489.0
LYD3_k127_2010848_2 one-carbon metabolic process K00194,K00198 - 1.2.7.4,2.1.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000599 378.0
LYD3_k127_2010848_3 Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 373.0
LYD3_k127_2010848_4 CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004704 333.0
LYD3_k127_2010848_5 Phage integrase, N-terminal SAM-like domain K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000006159 231.0
LYD3_k127_2010848_6 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.0000000000000000000000000000000000000000000000000000000000000004587 222.0
LYD3_k127_2029682_0 CAAX prenyl protease N-terminal, five membrane helices - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 422.0
LYD3_k127_2029682_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 353.0
LYD3_k127_2029682_2 peptidyl-prolyl cis-trans isomerase - - - 0.000000000000000000000000000000000000006641 149.0
LYD3_k127_2029682_3 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000001558 108.0
LYD3_k127_2029682_4 Tetratricopeptide repeat - - - 0.0000000000000000003257 96.0
LYD3_k127_2050075_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 586.0
LYD3_k127_2050075_1 tRNA (Guanine-1)-methyltransferase K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 286.0
LYD3_k127_2050075_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000009482 143.0
LYD3_k127_2050075_3 Belongs to the UPF0109 family K06960 - - 0.00000000000000000000000000000001135 128.0
LYD3_k127_2050075_4 cell redox homeostasis K02199 - - 0.0000000000000000000000000000001159 131.0
LYD3_k127_2050075_5 Thioredoxin-like domain K03671 - - 0.0000000000000000000000000000005583 122.0
LYD3_k127_2050075_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000002715 111.0
LYD3_k127_2050075_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000001357 102.0
LYD3_k127_2050075_8 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000007779 66.0
LYD3_k127_205921_0 Sigma-54 interaction domain K02481,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 444.0
LYD3_k127_205921_1 DNA polymerase K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008912 404.0
LYD3_k127_205921_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000001062 160.0
LYD3_k127_2063045_0 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000487 266.0
LYD3_k127_2063045_1 - - - - 0.000000000000000000000000000833 113.0
LYD3_k127_2063045_2 Binds the 23S rRNA K02909 - - 0.00000000000000000000000002805 109.0
LYD3_k127_2063045_3 Protein of unknown function (DUF1385) - - - 0.0005231 44.0
LYD3_k127_2074473_0 PFAM Nitrate reductase gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 430.0
LYD3_k127_2074473_1 part of a sulfur-relay system K11179 GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097163,GO:0140104,GO:1901360 - 0.000000000000000000000000000000000000000000000000002965 182.0
LYD3_k127_2074473_2 RsbT co-antagonist protein rsbRD N-terminal domain - - - 0.000000000000000000000000000000000000000000003109 170.0
LYD3_k127_2075077_0 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 2.365e-195 616.0
LYD3_k127_2075077_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004542 261.0
LYD3_k127_2075077_2 Domain of unknown function (DUF3459) K01236 - 3.2.1.141 0.0000000000000000000000000000000000000002817 151.0
LYD3_k127_208077_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000008432 80.0
LYD3_k127_208077_1 PFAM UBA THIF-type NAD FAD binding protein - - - 0.0000000000002228 70.0
LYD3_k127_208077_2 Outer membrane efflux protein - - - 0.000000000001358 81.0
LYD3_k127_208077_3 PFAM UBA THIF-type NAD FAD binding protein - - - 0.0000003872 55.0
LYD3_k127_2082789_0 Succinyl-CoA ligase like flavodoxin domain K01905,K22224 - 6.2.1.13 3.186e-225 713.0
LYD3_k127_2082789_1 GTP-binding GTPase Middle Region K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002884 617.0
LYD3_k127_2082789_10 Erythromycin esterase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000006127 202.0
LYD3_k127_2082789_2 PFAM Radical SAM domain protein K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 593.0
LYD3_k127_2082789_3 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 578.0
LYD3_k127_2082789_4 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 465.0
LYD3_k127_2082789_5 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 459.0
LYD3_k127_2082789_6 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009321 436.0
LYD3_k127_2082789_7 belongs to the CobB CobQ family K06873 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 318.0
LYD3_k127_2082789_8 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 289.0
LYD3_k127_2082789_9 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000003335 228.0
LYD3_k127_2083503_0 PFAM peptidase K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 409.0
LYD3_k127_2083503_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000001016 208.0
LYD3_k127_2083503_2 Transcriptional regulator - - - 0.0000000000003683 70.0
LYD3_k127_2094661_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000394 488.0
LYD3_k127_2094661_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 382.0
LYD3_k127_2094661_2 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005801 332.0
LYD3_k127_2094661_3 Domain of unknown function (DUF202) K00389 - - 0.0000000000000000000000000000000000000000002812 162.0
LYD3_k127_2094661_4 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000003027 103.0
LYD3_k127_2094661_5 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000007365 81.0
LYD3_k127_2094661_6 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0031123,GO:0031404,GO:0032991,GO:0033204,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042301,GO:0042779,GO:0042780,GO:0042781,GO:0043167,GO:0043168,GO:0043170,GO:0043199,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901681,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904 3.1.26.5 0.000000000003296 72.0
LYD3_k127_2112157_0 Ftsk_gamma K03466 - - 4.106e-204 657.0
LYD3_k127_2112157_1 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 467.0
LYD3_k127_2112157_2 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP) K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005932 280.0
LYD3_k127_2112157_3 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000000001172 216.0
LYD3_k127_2112157_4 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.00000000000000000000000000000000000000000000000001131 183.0
LYD3_k127_2112157_5 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000000000004145 147.0
LYD3_k127_2112157_6 - - - - 0.00000000004234 74.0
LYD3_k127_2122525_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000005635 255.0
LYD3_k127_2122525_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000006413 154.0
LYD3_k127_2122525_2 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.0000000000000000000000000392 115.0
LYD3_k127_2123139_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000001598 237.0
LYD3_k127_2123139_1 - K07112 - - 0.0000000000000000000000000000000000001988 146.0
LYD3_k127_2123139_2 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K00406,K01011,K07112 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000005322 141.0
LYD3_k127_2123139_3 TM2 domain - - - 0.00000000000000000000000000000000009055 137.0
LYD3_k127_2123214_0 Protein of unknown function (DUF512) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 449.0
LYD3_k127_2123214_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 341.0
LYD3_k127_2123214_2 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 287.0
LYD3_k127_2123214_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000005391 203.0
LYD3_k127_2123214_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K08744 - 2.7.8.41 0.0000000000000000000000000000007414 128.0
LYD3_k127_2123214_5 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000002877 122.0
LYD3_k127_2123214_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000386 74.0
LYD3_k127_2123214_7 PASTA K12132 - 2.7.11.1 0.0000000001779 70.0
LYD3_k127_2123214_8 competence protein - - - 0.00000004955 64.0
LYD3_k127_2126851_0 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008869 615.0
LYD3_k127_2126851_1 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.0000000004549 63.0
LYD3_k127_2131424_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 528.0
LYD3_k127_2131424_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 404.0
LYD3_k127_2168497_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 504.0
LYD3_k127_2168497_1 Receptor family ligand binding region K01999 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0008150,GO:0015711,GO:0015803,GO:0015804,GO:0015818,GO:0015820,GO:0015829,GO:0015849,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0070728,GO:0071702,GO:0071705 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002118 396.0
LYD3_k127_2168497_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000000000000000003318 176.0
LYD3_k127_2168497_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090 - 3.1.3.16 0.0000000000409 65.0
LYD3_k127_2186638_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 1.604e-287 894.0
LYD3_k127_2186638_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 484.0
LYD3_k127_2186638_2 Protein conserved in bacteria - - - 0.0005876 47.0
LYD3_k127_2186901_0 Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006833 497.0
LYD3_k127_2196772_0 Sigma54 specific transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 610.0
LYD3_k127_2209726_0 ABC1 family K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 580.0
LYD3_k127_2209726_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000001154 138.0
LYD3_k127_2209726_2 protein-glutamate methylesterase activity K00575,K03412,K03413,K07719 - 2.1.1.80,3.1.1.61,3.5.1.44 0.0000000000000000421 89.0
LYD3_k127_2209726_3 - - - - 0.0000000000000001945 82.0
LYD3_k127_2247701_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 3.505e-240 763.0
LYD3_k127_2247701_1 Proton-conducting membrane transporter K00342 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1902600,GO:1990204 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 439.0
LYD3_k127_2247701_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0030964,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 312.0
LYD3_k127_2247701_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000003333 221.0
LYD3_k127_2247701_4 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000002717 188.0
LYD3_k127_2247701_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.0000000000000000000000000000000006772 141.0
LYD3_k127_2251871_0 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 426.0
LYD3_k127_2251871_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 393.0
LYD3_k127_2251871_2 Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001767 254.0
LYD3_k127_2251871_3 PFAM ABC transporter related K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000126 225.0
LYD3_k127_2251871_4 amine dehydrogenase activity - - - 0.0000001598 52.0
LYD3_k127_2258893_0 ATPases associated with a variety of cellular activities K09689,K09691 - 3.6.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006651 334.0
LYD3_k127_2258893_1 Sulfotransferase family - - - 0.000000000000000000000000000000000000000003077 165.0
LYD3_k127_2258893_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000002178 156.0
LYD3_k127_2258893_4 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000004639 147.0
LYD3_k127_2258893_5 Glycosyl transferases group 1 - - - 0.0005959 50.0
LYD3_k127_2291658_0 DEAD DEAH box helicase K06877 - - 4.877e-214 689.0
LYD3_k127_2291658_1 Glycosyl transferase, family 2 K12992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 326.0
LYD3_k127_2291658_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000004743 243.0
LYD3_k127_2291658_3 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.000000000000000000000000000000000000000000000003474 179.0
LYD3_k127_2291658_4 protein-disulfide reductase activity - - - 0.000000000000000000000000002159 116.0
LYD3_k127_2291658_5 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000003143 111.0
LYD3_k127_2291658_6 FHA domain - - - 0.00000000001382 75.0
LYD3_k127_2291658_7 - - - - 0.000000005053 57.0
LYD3_k127_2309503_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 381.0
LYD3_k127_2309503_1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000003164 223.0
LYD3_k127_2309503_2 SMART Elongator protein 3 MiaB NifB - - - 0.000000004378 57.0
LYD3_k127_2310705_0 NADH dehydrogenase - - - 4.131e-220 696.0
LYD3_k127_2310705_1 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000003673 188.0
LYD3_k127_2312431_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005694 475.0
LYD3_k127_2312431_1 Cytochrome P460 - - - 0.00000000000000000000000000000000000001708 150.0
LYD3_k127_2322360_0 phosphoglucosamine mutase activity K01835,K01840 - 5.4.2.2,5.4.2.8 2.479e-225 710.0
LYD3_k127_2322360_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 1.057e-203 636.0
LYD3_k127_2322360_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000002121 80.0
LYD3_k127_2322360_11 - - - - 0.000000000000000556 81.0
LYD3_k127_2322360_2 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008816 586.0
LYD3_k127_2322360_3 PLD-like domain K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 490.0
LYD3_k127_2322360_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000088 367.0
LYD3_k127_2322360_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000275 254.0
LYD3_k127_2322360_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001458 232.0
LYD3_k127_2322360_7 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000002957 169.0
LYD3_k127_2322360_8 Glycine zipper 2TM domain - - - 0.0000000000000000000000000000003022 124.0
LYD3_k127_2322360_9 Cytochrome C oxidase, cbb3-type, subunit III K08906 - - 0.000000000000000000000000002218 115.0
LYD3_k127_2414981_0 Domain of unknown function (DUF3458_C) ARM repeats K01256,K08776 - 3.4.11.2 0.0 1286.0
LYD3_k127_2414981_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 559.0
LYD3_k127_2414981_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 - 1.4.1.2,1.4.1.3,1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 434.0
LYD3_k127_2414981_3 succinate dehydrogenase K00241,K00247 - - 0.000000000000000000003634 97.0
LYD3_k127_2414981_4 succinate dehydrogenase activity K00242,K00246 - - 0.0000000000000000001033 95.0
LYD3_k127_2433346_0 Bacterial type II and III secretion system protein K02453,K03219 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002916 304.0
LYD3_k127_2433346_1 group 2 family protein - - - 0.000000000000000000000000000000000000000000000000000000000007126 215.0
LYD3_k127_2433346_2 - - - - 0.000000000000000001069 97.0
LYD3_k127_2433346_3 Uncharacterized conserved protein (DUF2304) - - - 0.0000000004444 65.0
LYD3_k127_2433346_4 - - - - 0.0000001297 59.0
LYD3_k127_244362_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 310.0
LYD3_k127_244362_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000004617 160.0
LYD3_k127_244362_2 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000975 147.0
LYD3_k127_244362_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000002293 127.0
LYD3_k127_244362_4 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000004444 65.0
LYD3_k127_2475534_0 cyclic 2,3-diphosphoglycerate synthetase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 582.0
LYD3_k127_2475534_1 (2R)-phospho-3-sulfolactate synthase (ComA) - - - 0.0000000000006743 69.0
LYD3_k127_2475534_2 KR domain K00059 - 1.1.1.100 0.000000002674 60.0
LYD3_k127_2475534_3 Aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 0.000000009491 58.0
LYD3_k127_247907_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.0 1791.0
LYD3_k127_247907_1 Domain of unknown function (DUF4139) - - - 3.954e-198 631.0
LYD3_k127_247907_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 597.0
LYD3_k127_247907_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 576.0
LYD3_k127_247907_4 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 484.0
LYD3_k127_247907_5 OsmC-like protein K07397 - - 0.0000000000000000000000000000000000000000000000000000004856 196.0
LYD3_k127_247907_6 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000001389 194.0
LYD3_k127_250000_0 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004042 295.0
LYD3_k127_250000_1 transposition - - - 0.0000747 47.0
LYD3_k127_250000_2 Transposase - - - 0.0005621 42.0
LYD3_k127_2550689_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 550.0
LYD3_k127_2550689_1 His Kinase A (phosphoacceptor) domain K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000002464 268.0
LYD3_k127_2550689_2 Nitroreductase - - - 0.00000000000000000000000008817 109.0
LYD3_k127_2550689_3 Nitroreductase - - - 0.000000000000003996 81.0
LYD3_k127_2574546_1 Sulphur transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 313.0
LYD3_k127_2574546_2 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.00000000000000003749 82.0
LYD3_k127_2574546_3 - - - - 0.000001381 54.0
LYD3_k127_2589393_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 360.0
LYD3_k127_2589393_1 Belongs to the aldehyde dehydrogenase family K13821 - 1.2.1.88,1.5.5.2 0.00000000000000000000000000000000000000000000000000000000000000000004315 242.0
LYD3_k127_2589393_2 PFAM Glycosyl hydrolase family 3 N terminal domain K01207,K05349 - 3.2.1.21,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000008026 219.0
LYD3_k127_2589393_3 NAD dependent epimerase dehydratase family protein - - - 0.00000000000000000000000000000002631 138.0
LYD3_k127_2589393_4 Predicted membrane protein (DUF2318) - - - 0.000000000000000000384 92.0
LYD3_k127_260521_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006308 387.0
LYD3_k127_260521_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 332.0
LYD3_k127_260521_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002959 282.0
LYD3_k127_260521_3 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000001225 229.0
LYD3_k127_260521_4 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000006415 226.0
LYD3_k127_260521_5 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000001314 154.0
LYD3_k127_260521_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000005546 136.0
LYD3_k127_260521_7 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001528 99.0
LYD3_k127_260521_8 Ribosomal protein S10p/S20e K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000002799 90.0
LYD3_k127_26217_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 487.0
LYD3_k127_26217_1 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 439.0
LYD3_k127_26217_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 306.0
LYD3_k127_26217_3 CGGC - - - 0.0000000000000000000000000000000000000000000000000000000000000003954 222.0
LYD3_k127_26217_4 peptidase U32 - - - 0.0000000000000000000000000000000000000000000000000000000000003606 213.0
LYD3_k127_26217_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000000000000000003035 134.0
LYD3_k127_26217_6 radical SAM domain protein - - - 0.00000000000000000000000000000001839 139.0
LYD3_k127_26217_7 Protein of unknown function (DUF2892) - - - 0.0000000005971 63.0
LYD3_k127_26217_8 peroxiredoxin activity K01607 - 4.1.1.44 0.000000006388 61.0
LYD3_k127_2659039_0 PBP superfamily domain K05772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000961 392.0
LYD3_k127_2659039_1 Transcriptional regulator K02019,K05772 - - 0.0000000000000000000000000000000000244 141.0
LYD3_k127_2659039_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000003745 98.0
LYD3_k127_2689127_0 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 384.0
LYD3_k127_2689127_1 ThiF family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000642 376.0
LYD3_k127_2689127_2 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000009329 198.0
LYD3_k127_2689127_3 JAB/MPN domain K21140 - 3.13.1.6 0.0000000000000000000000002472 109.0
LYD3_k127_2689127_4 sulfur carrier activity - - - 0.0000000000004818 70.0
LYD3_k127_2689127_5 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K00564,K15460 - 2.1.1.172,2.1.1.223 0.000000000006145 67.0
LYD3_k127_270892_0 Molecular chaperone. Has ATPase activity K04079 - - 7.222e-268 838.0
LYD3_k127_270892_1 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 436.0
LYD3_k127_270892_2 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000002984 191.0
LYD3_k127_270892_3 SMART Cold shock protein K03704 - - 0.000000000000000000000000007154 110.0
LYD3_k127_270892_4 metalloendopeptidase activity K03799 - - 0.00000000000000000000000003445 120.0
LYD3_k127_2756583_0 Sigma-54 interaction domain - - - 6.005e-211 664.0
LYD3_k127_2756583_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 328.0
LYD3_k127_2756583_2 membrane transporter protein K07090 - - 0.000000000000000001319 87.0
LYD3_k127_2771694_0 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 1.177e-227 709.0
LYD3_k127_2771694_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 605.0
LYD3_k127_2771694_10 mercury ion transmembrane transporter activity K07213 - - 0.0000000000000006051 79.0
LYD3_k127_2771694_14 PilZ domain - - - 0.00003278 52.0
LYD3_k127_2771694_2 TIGRFAM phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 497.0
LYD3_k127_2771694_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005921 462.0
LYD3_k127_2771694_4 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 335.0
LYD3_k127_2771694_5 histidine kinase, HAMP K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000003871 220.0
LYD3_k127_2771694_6 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000001325 196.0
LYD3_k127_2771694_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000001035 135.0
LYD3_k127_2771694_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000001539 124.0
LYD3_k127_2771694_9 - - - - 0.00000000000000000005278 100.0
LYD3_k127_2805608_0 Glucodextranase, domain N K01178 - 3.2.1.3 0.0 1109.0
LYD3_k127_2805608_1 Belongs to the glycosyl hydrolase 57 family - - - 8.432e-257 803.0
LYD3_k127_2805608_2 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 488.0
LYD3_k127_2805608_3 DJ-1/PfpI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 337.0
LYD3_k127_2805608_4 Copper resistance protein CopZ K07213 - - 0.00002072 49.0
LYD3_k127_2809039_0 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 535.0
LYD3_k127_2809039_1 Cytochrome C oxidase, cbb3-type, subunit III K08906 - - 0.0000000000000000000000000003727 118.0
LYD3_k127_2809039_2 NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000008944 89.0
LYD3_k127_2809039_3 Bacterial regulatory protein, Fis family - - - 0.00001506 49.0
LYD3_k127_2809039_4 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.00003453 46.0
LYD3_k127_2818924_0 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000003396 226.0
LYD3_k127_2818924_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000004639 187.0
LYD3_k127_2838788_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008521 395.0
LYD3_k127_2838788_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K14986 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002902 265.0
LYD3_k127_2838788_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000001416 249.0
LYD3_k127_2838788_3 peptidyl-prolyl cis-trans isomerase activity K03769,K03771 - 5.2.1.8 0.0000000006386 69.0
LYD3_k127_2838788_4 phosphorelay signal transduction system - - - 0.000001086 50.0
LYD3_k127_2838788_5 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K03769,K07533 - 5.2.1.8 0.000009482 57.0
LYD3_k127_2838788_6 cellulose binding - - - 0.0000113 60.0
LYD3_k127_2846654_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 7.491e-311 960.0
LYD3_k127_2846654_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 5.25e-244 765.0
LYD3_k127_2846654_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 420.0
LYD3_k127_2846654_3 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007802 370.0
LYD3_k127_2846654_4 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000003442 250.0
LYD3_k127_2846654_5 Peptidase family M50 - - - 0.0000000000000000000000000000000000000000000000000000000733 199.0
LYD3_k127_2852190_0 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006104 376.0
LYD3_k127_2852190_1 Sigma-54 interaction domain K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000002145 215.0
LYD3_k127_2852190_2 ABC transporter K02065 - - 0.00000000000002302 76.0
LYD3_k127_2883472_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 9.883e-199 629.0
LYD3_k127_2883472_1 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01739 - 2.5.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 374.0
LYD3_k127_2883472_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000078 166.0
LYD3_k127_2883472_4 PFAM Transglycosylase-associated protein - - - 0.00000000257 61.0
LYD3_k127_2912600_0 PFAM AICARFT IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 516.0
LYD3_k127_2912600_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000002104 213.0
LYD3_k127_2912600_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000008968 197.0
LYD3_k127_2925012_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000001029 72.0
LYD3_k127_2925110_0 ATP synthase alpha/beta family, nucleotide-binding domain K02118 - - 4.166e-204 643.0
LYD3_k127_2925110_1 PFAM V-type ATPase 116 kDa K02123 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 563.0
LYD3_k127_2925110_10 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.000000000000000000000000005615 114.0
LYD3_k127_2925110_11 PFAM H transporting two-sector ATPase C subunit K02124 - - 0.000000000000000000000002205 104.0
LYD3_k127_2925110_12 Protein of unknown function (DUF2892) - - - 0.000000000006471 72.0
LYD3_k127_2925110_13 Pas domain K00974,K02485 - 2.7.7.72 0.0000001519 55.0
LYD3_k127_2925110_14 PilZ domain - - - 0.0000009138 59.0
LYD3_k127_2925110_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044464,GO:0044769,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1902600 3.6.3.14,3.6.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 557.0
LYD3_k127_2925110_3 denitrification pathway - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007907 321.0
LYD3_k127_2925110_4 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004293 279.0
LYD3_k127_2925110_5 Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein) K03620,K08354 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000004574 243.0
LYD3_k127_2925110_6 ATP synthase subunit D K02120 - - 0.00000000000000000000000000000000000000000000000000000000000000005197 229.0
LYD3_k127_2925110_7 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000004927 212.0
LYD3_k127_2925110_9 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.0000000000000000000000000001675 122.0
LYD3_k127_2941360_0 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 466.0
LYD3_k127_2941360_1 histidine kinase HAMP region domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007691 415.0
LYD3_k127_2941360_2 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005338 364.0
LYD3_k127_2952844_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 1.416e-267 835.0
LYD3_k127_2952844_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 4.17e-213 669.0
LYD3_k127_2952844_2 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 494.0
LYD3_k127_2952844_3 Alginate export - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 414.0
LYD3_k127_2952844_4 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 318.0
LYD3_k127_2952844_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000006066 236.0
LYD3_k127_2952844_6 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000004513 202.0
LYD3_k127_2952844_7 Nucleotidyltransferase domain - - - 0.0007445 47.0
LYD3_k127_2956055_0 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 458.0
LYD3_k127_2956055_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000009776 262.0
LYD3_k127_2956055_2 DivIVA protein K04074 - - 0.0000000000000000000000000000000000000000000000000000000000008191 213.0
LYD3_k127_2956055_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000004856 145.0
LYD3_k127_2956055_4 YGGT family K02221 - - 0.00000000000000000000000000000004231 128.0
LYD3_k127_2956055_5 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000006119 123.0
LYD3_k127_2956055_6 Signal transduction histidine kinase - - - 0.000000000000000000005619 109.0
LYD3_k127_2956055_7 Conserved hypothetical protein 698 - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000003002 84.0
LYD3_k127_2956055_8 Histidine kinase K07654 - 2.7.13.3 0.0001942 55.0
LYD3_k127_2967019_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 9.606e-225 702.0
LYD3_k127_2967019_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000001793 243.0
LYD3_k127_2967019_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000003158 204.0
LYD3_k127_2967019_3 PFAM Endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000000000000001669 171.0
LYD3_k127_2967019_4 SWI complex, BAF60b domains - - - 0.000000000000000000000000000005081 121.0
LYD3_k127_2967019_5 tetratricopeptide repeat - - - 0.0000000000000000001096 102.0
LYD3_k127_2967019_6 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 - 2.1.1.200,3.5.1.19,6.1.1.16 0.0000000008232 61.0
LYD3_k127_2990961_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 344.0
LYD3_k127_2990961_1 Protein of unknown function DUF58 - - - 0.00000000000000000000905 99.0
LYD3_k127_3023534_0 GAF domain K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000003944 195.0
LYD3_k127_3033248_0 PFAM magnesium chelatase ChlI subunit K07391 - - 3.67e-208 659.0
LYD3_k127_3033248_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 316.0
LYD3_k127_3033248_2 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.000000000000000000000000000000000000000000000000000000000007149 227.0
LYD3_k127_3033248_4 Regulatory protein, FmdB family - - - 0.000000000000000006561 85.0
LYD3_k127_3033248_5 COG3901 Regulator of nitric oxide reductase transcription K19339,K19343 - - 0.00000000000000008315 80.0
LYD3_k127_3033248_6 lactate oxidation K18929 - - 0.000000000009931 68.0
LYD3_k127_303413_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 558.0
LYD3_k127_303413_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000002323 215.0
LYD3_k127_303413_2 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000543 176.0
LYD3_k127_303413_3 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000005825 64.0
LYD3_k127_3051486_0 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 374.0
LYD3_k127_3051486_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000443 196.0
LYD3_k127_3051486_2 Lactonase, 7-bladed beta-propeller - - - 0.00000002788 65.0
LYD3_k127_3051894_0 Part of the ABC transporter complex PstSACB involved in phosphate import - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002534 269.0
LYD3_k127_3051894_1 Histidine kinase K02482,K14986 - 2.7.13.3 0.000000000000000000000000000000000000000000009423 178.0
LYD3_k127_3051894_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K13039 - 4.1.1.79 0.00000000000000000000000000000000000000009322 155.0
LYD3_k127_3061942_0 Fumarate hydratase (Fumerase) K01676 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004326 284.0
LYD3_k127_3061942_1 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001868 248.0
LYD3_k127_3061942_2 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000008292 197.0
LYD3_k127_3061942_3 Transcriptional regulator - - - 0.0000000000000000000000000000006063 137.0
LYD3_k127_3061942_4 AMP binding - - - 0.000000000000000000000000001004 115.0
LYD3_k127_3061942_5 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000002508 100.0
LYD3_k127_3061942_6 PFAM Rhodanese domain protein - - - 0.00000008707 60.0
LYD3_k127_3068234_0 Metallopeptidase family M24 K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003503 278.0
LYD3_k127_3068234_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000003366 247.0
LYD3_k127_3068234_2 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000006009 227.0
LYD3_k127_3068234_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000001469 174.0
LYD3_k127_3068234_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000003767 173.0
LYD3_k127_3068234_5 Roadblock/LC7 domain - - - 0.00000000000000001459 86.0
LYD3_k127_308049_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2102.0
LYD3_k127_308049_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1876.0
LYD3_k127_308049_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 340.0
LYD3_k127_308049_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000000002843 194.0
LYD3_k127_308049_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000005153 140.0
LYD3_k127_308049_5 Mut7-C RNAse domain K09122 - - 0.0000000000000000000000000000003657 128.0
LYD3_k127_308049_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000009972 83.0
LYD3_k127_3089381_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 341.0
LYD3_k127_3089381_1 Rubrerythrin - - - 0.00000000000000000000000000000000000000000469 162.0
LYD3_k127_3089381_2 PFAM thiamineS protein - - - 0.00000000000007439 73.0
LYD3_k127_310183_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007271 532.0
LYD3_k127_310183_1 Belongs to the N(4) N(6)-methyltransferase family - - - 0.00000000002967 66.0
LYD3_k127_310896_0 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 302.0
LYD3_k127_310896_2 Belongs to the peptidase S26 family K13280 - 3.4.21.89 0.00000003294 65.0
LYD3_k127_310896_3 PFAM Transposase DDE domain - - - 0.00000004475 55.0
LYD3_k127_310896_4 Coenzyme PQQ synthesis protein D (PqqD) - - - 0.000001053 54.0
LYD3_k127_311252_0 ABC transporter K06020 - 3.6.3.25 1.02e-310 957.0
LYD3_k127_311252_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000001047 138.0
LYD3_k127_3112575_0 SMART Chromosomal replication initiator DnaA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008992 254.0
LYD3_k127_3112575_1 PFAM Transposase IS66 family K07484 - - 0.000000000000000000000000000000000000000000000000000000000000000002991 246.0
LYD3_k127_3179976_0 Cytochrome b5-like Heme/Steroid binding domain K07245,K14166 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 298.0
LYD3_k127_3179976_1 PFAM ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003064 233.0
LYD3_k127_3179976_2 tRNA nucleotidyltransferase poly(A) polymerase K00974 - 2.7.7.72 0.000000000000000000003819 100.0
LYD3_k127_31900_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007009 549.0
LYD3_k127_31900_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 363.0
LYD3_k127_31900_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 328.0
LYD3_k127_31900_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000758 335.0
LYD3_k127_31900_4 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000006206 163.0
LYD3_k127_31900_5 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000003858 119.0
LYD3_k127_31900_6 SurA N-terminal domain K03771 - 5.2.1.8 0.00003139 54.0
LYD3_k127_3251690_0 ATPase BadF BadG BcrA BcrD type - - - 0.0 1515.0
LYD3_k127_3251690_1 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000003874 63.0
LYD3_k127_3251690_2 Belongs to the N-Me-Phe pilin family K02650 - - 0.00000006996 62.0
LYD3_k127_3259413_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 7.7e-205 655.0
LYD3_k127_3259413_1 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 520.0
LYD3_k127_3259413_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001659 268.0
LYD3_k127_3259413_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000001734 188.0
LYD3_k127_3259413_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000002795 179.0
LYD3_k127_3259413_5 - - - - 0.00000000000000000000000001247 113.0
LYD3_k127_3259413_6 His Kinase A (phosphoacceptor) domain K07708 - 2.7.13.3 0.0000000000003039 74.0
LYD3_k127_3300073_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007371 414.0
LYD3_k127_3300073_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000197 355.0
LYD3_k127_3300073_2 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 313.0
LYD3_k127_3324062_0 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004554 419.0
LYD3_k127_3324062_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006065 267.0
LYD3_k127_3324062_2 Histidine kinase K02482,K14986 - 2.7.13.3 0.00000000000000000000002505 102.0
LYD3_k127_3331319_0 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 - - 5.958e-276 867.0
LYD3_k127_3331319_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 605.0
LYD3_k127_3331319_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 398.0
LYD3_k127_3331319_3 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 394.0
LYD3_k127_3331319_4 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001923 291.0
LYD3_k127_3331319_5 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000004236 124.0
LYD3_k127_3353356_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 428.0
LYD3_k127_3353356_1 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001214 274.0
LYD3_k127_3353356_2 prohibitin homologues - - - 0.0000000000002344 70.0
LYD3_k127_3356356_0 phosphatase activity K20881 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0008477,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016798,GO:0016799,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050483,GO:0050484 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 294.0
LYD3_k127_3356356_1 imidazoleglycerol-phosphate dehydratase activity K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000005497 251.0
LYD3_k127_3356356_2 Aminotransferase class I and II K00817 - 2.6.1.9 0.0000000000000000000000000000000000461 138.0
LYD3_k127_3358664_0 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 574.0
LYD3_k127_3358664_1 PFAM Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 348.0
LYD3_k127_3358664_2 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000000000006086 103.0
LYD3_k127_3358664_3 Universal stress protein family - - - 0.000000000002311 73.0
LYD3_k127_3362524_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 1.682e-198 628.0
LYD3_k127_3362524_1 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 421.0
LYD3_k127_3362524_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000001044 89.0
LYD3_k127_3362524_3 peptidyl-tyrosine sulfation - - - 0.00000000002747 72.0
LYD3_k127_3368838_0 COGs COG1022 Long-chain acyl-CoA synthetase (AMP-forming) K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 310.0
LYD3_k127_3368838_1 - - - - 0.00000000000000000000000000000000000000000000000000000000009677 215.0
LYD3_k127_3378616_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.989e-270 844.0
LYD3_k127_3378616_1 Wzt C-terminal domain K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007893 353.0
LYD3_k127_3378616_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000012 279.0
LYD3_k127_3378616_3 glycolate biosynthetic process K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000002431 244.0
LYD3_k127_3378616_4 PFAM ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000002028 226.0
LYD3_k127_3378616_5 ABC-2 type transporter K09690 - - 0.000000000000000000000000000000000000000000000000007493 183.0
LYD3_k127_3378616_6 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000000000004158 150.0
LYD3_k127_3378616_7 KOW (Kyprides, Ouzounis, Woese) motif. K05785 - - 0.000000000000000000000000000000000001314 144.0
LYD3_k127_3378616_8 DNA-binding transcription factor activity K18996 - - 0.0000000000000000000000002731 111.0
LYD3_k127_3402591_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 586.0
LYD3_k127_3402591_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 511.0
LYD3_k127_3402591_10 PFAM Polynucleotide adenylyltransferase region K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000006102 66.0
LYD3_k127_3402591_11 - - - - 0.00000886 48.0
LYD3_k127_3402591_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 402.0
LYD3_k127_3402591_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 396.0
LYD3_k127_3402591_4 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003817 349.0
LYD3_k127_3402591_5 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 312.0
LYD3_k127_3402591_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000003798 187.0
LYD3_k127_3402591_7 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000000000002306 151.0
LYD3_k127_3402591_8 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 - 2.5.1.17 0.000000000000000000000000000000000000000261 155.0
LYD3_k127_3402591_9 Poly A polymerase, head domain K00970 - 2.7.7.19 0.000000002622 63.0
LYD3_k127_34031_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 515.0
LYD3_k127_34031_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 429.0
LYD3_k127_34031_2 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000000000000000000000000000000000000000000001623 226.0
LYD3_k127_34031_3 metal-dependent phosphohydrolase HD region - - - 0.000000000000000000000000000000000000000000000000000000002806 216.0
LYD3_k127_34031_4 Phosphoglycerate kinase K00927 - 2.7.2.3 0.000000000000000000000000000000000000007378 145.0
LYD3_k127_3418240_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 505.0
LYD3_k127_3418240_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008658 455.0
LYD3_k127_3418240_10 COG2203 FOG GAF domain - - - 0.000004233 58.0
LYD3_k127_3418240_12 Major Facilitator Superfamily - - - 0.0004185 44.0
LYD3_k127_3418240_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 425.0
LYD3_k127_3418240_3 Methylenetetrahydrofolate reductase K00297 GO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 318.0
LYD3_k127_3418240_4 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009582 252.0
LYD3_k127_3418240_5 Chromate resistance exported protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005915 248.0
LYD3_k127_3418240_6 - - - - 0.00000000000000000000000000000000000000000000000000000000007702 211.0
LYD3_k127_3418240_7 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.00000000000000000000000000000000000000000000000000000002585 199.0
LYD3_k127_3418240_8 shape-determining protein MreC K03570 - - 0.000000000000000000000000000000000000000000000003625 182.0
LYD3_k127_3418240_9 Histidine kinase A domain protein K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000001234 171.0
LYD3_k127_3433630_0 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 612.0
LYD3_k127_3433630_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 573.0
LYD3_k127_3433630_2 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000000000000000000000000000000000000000009283 172.0
LYD3_k127_3433630_3 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000025 171.0
LYD3_k127_3433630_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000008979 121.0
LYD3_k127_3435278_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 579.0
LYD3_k127_3435278_1 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009721 567.0
LYD3_k127_3435278_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 535.0
LYD3_k127_3435278_3 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 417.0
LYD3_k127_34359_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 5.974e-203 641.0
LYD3_k127_34359_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 595.0
LYD3_k127_34359_10 GDP-mannose 4,6 dehydratase K19180 - 1.1.1.339 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 309.0
LYD3_k127_34359_11 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 291.0
LYD3_k127_34359_12 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000002217 213.0
LYD3_k127_34359_13 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000000000000000000000006051 195.0
LYD3_k127_34359_14 Methyltransferase domain - - - 0.000000000000000000000000000000000000001214 155.0
LYD3_k127_34359_2 PFAM outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 476.0
LYD3_k127_34359_3 Glycosyl transferase family 2 K00721,K20534 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007169 438.0
LYD3_k127_34359_4 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 441.0
LYD3_k127_34359_5 Amino acid permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004932 417.0
LYD3_k127_34359_6 Polysaccharide biosynthesis protein K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 406.0
LYD3_k127_34359_7 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006703 379.0
LYD3_k127_34359_8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 370.0
LYD3_k127_34359_9 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007039 321.0
LYD3_k127_3436226_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 429.0
LYD3_k127_3436226_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000004021 176.0
LYD3_k127_3436226_2 - - - - 0.0000000000000000000000000001074 119.0
LYD3_k127_3436226_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000002829 113.0
LYD3_k127_3436226_4 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.000000000000000000000004226 109.0
LYD3_k127_3439261_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1054.0
LYD3_k127_3439603_0 CO dehydrogenase K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005388 306.0
LYD3_k127_3439603_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 0.0000000000000000000000000000000000000000000000000000000000000000006614 233.0
LYD3_k127_3439603_2 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000001797 148.0
LYD3_k127_3445403_0 PFAM NADH Ubiquinone plastoquinone (complex I) - - - 8.671e-196 631.0
LYD3_k127_3445403_1 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002585 530.0
LYD3_k127_3445403_2 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 338.0
LYD3_k127_3445403_3 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006849 244.0
LYD3_k127_3445403_4 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000000000000344 92.0
LYD3_k127_3445403_5 - - - - 0.0000002514 55.0
LYD3_k127_344836_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 3.103e-279 882.0
LYD3_k127_344836_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 340.0
LYD3_k127_344836_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 312.0
LYD3_k127_344836_3 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000000000001614 155.0
LYD3_k127_344836_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000006955 146.0
LYD3_k127_344836_5 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.000000000000000000009463 92.0
LYD3_k127_3451468_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003851 602.0
LYD3_k127_3451468_1 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 317.0
LYD3_k127_3451468_2 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000696 273.0
LYD3_k127_3451468_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000003104 159.0
LYD3_k127_3451468_4 bacterial (prokaryotic) histone like domain K05788 - - 0.00000000000000000000000001732 111.0
LYD3_k127_3455751_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 402.0
LYD3_k127_3455751_1 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 322.0
LYD3_k127_3455751_10 ABC-type transport auxiliary lipoprotein component K18480 - - 0.0000608 53.0
LYD3_k127_3455751_2 PLD-like domain K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001944 277.0
LYD3_k127_3455751_3 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004366 261.0
LYD3_k127_3455751_4 Protein phosphatase 2C domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000001313 250.0
LYD3_k127_3455751_5 Zinc dependent phospholipase C - - - 0.0000000000000000000000000000000000000000000000000001438 198.0
LYD3_k127_3455751_6 SPTR Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000000000000000000000000006058 176.0
LYD3_k127_3455751_7 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000000000000000000000000001017 117.0
LYD3_k127_3455751_8 antisigma factor binding K04749,K05946,K06378 - 2.4.1.187 0.00000000000000009318 83.0
LYD3_k127_3455751_9 PFAM Mammalian cell entry related K02067 - - 0.0000000000000005819 88.0
LYD3_k127_3465499_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 5.475e-238 759.0
LYD3_k127_3465499_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 535.0
LYD3_k127_3465499_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000008661 160.0
LYD3_k127_3465499_3 ATP synthesis coupled proton transport K02109,K18682 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000002107 153.0
LYD3_k127_3465499_4 ATP synthesis coupled proton transport K02109 GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0016020,GO:0016469,GO:0032991,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045259,GO:0045260,GO:0071944,GO:0098796,GO:0098797 - 0.000000000000000000000000123 111.0
LYD3_k127_3466160_0 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 472.0
LYD3_k127_3466160_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 345.0
LYD3_k127_3466160_2 PFAM NADH Ubiquinone - - - 0.00000000000000000000000000000000000000000000000000000000000000001651 227.0
LYD3_k127_3466160_3 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000001099 148.0
LYD3_k127_3466481_0 ABC transporter K06020 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 550.0
LYD3_k127_3466481_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K15738 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010528,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0031323,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0070894,GO:0071944,GO:0080090,GO:0097159,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 385.0
LYD3_k127_347274_0 TIGRFAM hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 481.0
LYD3_k127_347274_1 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004033 271.0
LYD3_k127_347274_2 MlaC protein K07323 - - 0.0000000000000000000000000000000002862 139.0
LYD3_k127_347274_3 PFAM RNA recognition motif - - - 0.00000000000000000000001388 105.0
LYD3_k127_347274_4 Ribosomal protein S21 K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000006062 78.0
LYD3_k127_347274_5 - - - - 0.000000000000001256 78.0
LYD3_k127_347274_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00007437 47.0
LYD3_k127_3514770_0 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 416.0
LYD3_k127_3514770_1 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000006228 114.0
LYD3_k127_3514770_2 4Fe-4S dicluster domain - - - 0.000000000000000006878 85.0
LYD3_k127_3514770_3 PFAM DSBA oxidoreductase - - - 0.0007259 45.0
LYD3_k127_3518870_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.244e-235 740.0
LYD3_k127_3518870_1 C oxidoreductase subunit A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 422.0
LYD3_k127_3518870_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000001588 190.0
LYD3_k127_3518870_3 protein phosphatase 2C domain protein K01090,K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000002455 186.0
LYD3_k127_3518870_4 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.000000000000000000000000000000000000000006466 155.0
LYD3_k127_3518870_5 FHA Domain - - - 0.000000000000000000000000000002731 128.0
LYD3_k127_3518870_6 Ribbon-helix-helix protein, copG family - - - 0.00000000000000000000839 93.0
LYD3_k127_3518870_7 Cytochrome c - - - 0.00000000000000004175 84.0
LYD3_k127_3521354_0 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 364.0
LYD3_k127_3521354_1 - - - - 0.00000000000000000000000000000000000004891 150.0
LYD3_k127_3521354_2 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000007051 59.0
LYD3_k127_3544904_0 metal-dependent phosphohydrolase HD - - - 2.992e-207 664.0
LYD3_k127_3544904_1 type IV pilus assembly PilZ - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 552.0
LYD3_k127_3544904_2 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 432.0
LYD3_k127_3544904_3 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005517 391.0
LYD3_k127_3544904_4 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006252 287.0
LYD3_k127_3544904_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000005985 74.0
LYD3_k127_3544904_6 redox protein regulator of disulfide bond formation K07397 - - 0.0006317 43.0
LYD3_k127_3556789_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 5.979e-283 884.0
LYD3_k127_3556789_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.496e-222 699.0
LYD3_k127_3556789_10 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000002529 88.0
LYD3_k127_3556789_11 Tetratricopeptide repeat protein - - - 0.0001641 52.0
LYD3_k127_3556789_2 cobalt ion transport K02007,K02009,K16915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 400.0
LYD3_k127_3556789_3 Lysin motif K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 367.0
LYD3_k127_3556789_4 zinc ion binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002339 269.0
LYD3_k127_3556789_5 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009003 254.0
LYD3_k127_3556789_6 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000003758 160.0
LYD3_k127_3556789_7 CutA1 divalent ion tolerance protein K03926 - - 0.000000000000000000000000000000005563 131.0
LYD3_k127_3556789_8 Cobalt transport protein K02008 - - 0.0000000000000000000000000000001566 126.0
LYD3_k127_3556789_9 DNA-damage-inducible protein d K14623 - - 0.0000000000000000000000000006029 115.0
LYD3_k127_3561839_0 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 539.0
LYD3_k127_3561839_1 Alpha amylase, catalytic domain K06044 - 5.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006508 537.0
LYD3_k127_3561839_2 Cys/Met metabolism PLP-dependent enzyme K01760,K01761 - 4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 372.0
LYD3_k127_3561839_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 351.0
LYD3_k127_3561839_4 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.000000000000000000000000000000000000000000000000004688 187.0
LYD3_k127_3561839_5 'Cold-shock' DNA-binding domain - - - 0.000000000000000000000005414 102.0
LYD3_k127_3561839_6 PFAM 4Fe-4S K00176 - 1.2.7.3 0.00000000000000000003779 92.0
LYD3_k127_3618820_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 512.0
LYD3_k127_3618820_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 424.0
LYD3_k127_3618820_2 Protein of unknown function DUF86 - - - 0.000000000000000000000000000000006082 131.0
LYD3_k127_3618820_3 nucleotidyltransferase activity K07076 - - 0.0000000000000001664 80.0
LYD3_k127_3621142_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 586.0
LYD3_k127_3621142_1 Mannose-6-phosphate isomerase, type K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009285 575.0
LYD3_k127_3621142_2 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 473.0
LYD3_k127_3621142_3 Glycosyl transferase family group 2 K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004574 316.0
LYD3_k127_3621142_4 glycosyl transferase family 2 K00786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000257 250.0
LYD3_k127_3621142_5 Uncharacterized conserved protein (DUF2304) - - - 0.0000000000000000002394 91.0
LYD3_k127_364316_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004558 398.0
LYD3_k127_364316_1 Cell wall formation K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 380.0
LYD3_k127_364316_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 326.0
LYD3_k127_364316_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000002832 223.0
LYD3_k127_364316_4 UDP-N-acetylmuramate-L-alanine ligase activity K01924 - 6.3.2.8 0.00000000000000000000000000001262 123.0
LYD3_k127_364316_5 cell division protein FtsQ K03589 - - 0.0000000000003664 79.0
LYD3_k127_3680485_0 PFAM LemA family protein K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 291.0
LYD3_k127_3680485_1 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002376 286.0
LYD3_k127_3680485_2 DegT/DnrJ/EryC1/StrS aminotransferase family K14260 - 2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000009696 230.0
LYD3_k127_3680485_3 Pfam:TPM K08988 - - 0.00000000000000000000000000000000000000000000000000000000000816 220.0
LYD3_k127_3680485_4 Gaf domain K02488 - 2.7.7.65 0.0000000000000000000000000127 119.0
LYD3_k127_3681644_0 cell redox homeostasis - - - 1.124e-210 668.0
LYD3_k127_3681644_1 RNase_H superfamily K07502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 291.0
LYD3_k127_3681644_2 phosphorelay signal transduction system K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000004659 119.0
LYD3_k127_3681644_3 integrase domain protein SAM domain protein K04763 - - 0.0000002493 54.0
LYD3_k127_3702547_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 443.0
LYD3_k127_3702547_1 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.0000000000002875 71.0
LYD3_k127_3702547_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000006082 72.0
LYD3_k127_3713072_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.246e-218 684.0
LYD3_k127_3713072_1 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 330.0
LYD3_k127_3713072_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000002011 234.0
LYD3_k127_3713072_3 Cytochrome c K16966,K17049,K17052 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000000000000003661 170.0
LYD3_k127_3713072_4 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.000000000000005762 75.0
LYD3_k127_3713072_5 Putative member of DMT superfamily (DUF486) K09922 - - 0.000000000001753 66.0
LYD3_k127_3717868_0 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 557.0
LYD3_k127_3717868_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000004776 235.0
LYD3_k127_3724487_0 PD-(D/E)XK nuclease superfamily - - - 1.608e-243 786.0
LYD3_k127_3724487_1 Belongs to the helicase family. UvrD subfamily - - - 0.000000000000000000000000000000000000000002249 165.0
LYD3_k127_3724487_2 Belongs to the helicase family. UvrD subfamily - - - 0.0003415 46.0
LYD3_k127_3724794_0 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 1.603e-217 685.0
LYD3_k127_3724794_1 MacB-like periplasmic core domain K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 438.0
LYD3_k127_3724794_2 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002136 247.0
LYD3_k127_3724794_3 Response regulator receiver K02485 - - 0.000000000000000000000004002 102.0
LYD3_k127_3724794_4 TIGRFAM phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 - - 0.00001496 56.0
LYD3_k127_37440_0 ABC transporter K02021,K06147,K11085 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006855,GO:0006869,GO:0008144,GO:0008150,GO:0008289,GO:0008559,GO:0009987,GO:0010876,GO:0015221,GO:0015238,GO:0015399,GO:0015405,GO:0015437,GO:0015893,GO:0015920,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034040,GO:0034204,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042623,GO:0042626,GO:0042802,GO:0042908,GO:0042910,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0071944,GO:0097035,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901265,GO:1901363,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006119 502.0
LYD3_k127_37440_1 transferase activity, transferring glycosyl groups K13500 - 2.4.1.175,2.4.1.226 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 299.0
LYD3_k127_37440_2 O-antigen K02847 - - 0.0000000000007796 80.0
LYD3_k127_37440_3 CYTH K05873 - 4.6.1.1 0.00000000003312 70.0
LYD3_k127_37440_4 - - - - 0.00000000103 61.0
LYD3_k127_3757140_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274,K02298 - 1.10.3.10,1.9.3.1 2.168e-220 691.0
LYD3_k127_3757140_1 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000001461 244.0
LYD3_k127_3757140_2 TIGRFAM Caa(3)-type oxidase, subunit IV K02277 - 1.9.3.1 0.00006142 47.0
LYD3_k127_3769902_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.807e-196 622.0
LYD3_k127_3769902_1 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 370.0
LYD3_k127_3773346_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 544.0
LYD3_k127_3773346_1 ATPase activity K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000004394 239.0
LYD3_k127_3773346_2 Putative ATP-binding cassette K01992 - - 0.0000000000000000000000000000000000000000000000000000000004071 221.0
LYD3_k127_3773346_3 Belongs to the sulfur carrier protein TusA family - - - 0.000000382 52.0
LYD3_k127_3782747_0 phosphorelay signal transduction system K07713,K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 339.0
LYD3_k127_3782747_1 phosphorelay sensor kinase activity K02491,K07697 - 2.7.13.3 0.00000000000000000000000000000000000000000000000008622 195.0
LYD3_k127_3784037_0 response regulator K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 495.0
LYD3_k127_3784037_1 histidine kinase, HAMP K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002198 256.0
LYD3_k127_3784037_2 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000508 134.0
LYD3_k127_3784037_3 cheY-homologous receiver domain - - - 0.000000000000000003855 87.0
LYD3_k127_3800522_0 AMP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003005 354.0
LYD3_k127_3800522_1 Cation transporter/ATPase, N-terminus - - - 0.000000000000000000000000000007551 122.0
LYD3_k127_3800522_2 Two component transcriptional regulator, winged helix family K07667 - - 0.00004313 48.0
LYD3_k127_3824423_0 CO-methylating acetyl-CoA synthase activity K00193,K14138 - 2.3.1.169 2.095e-212 667.0
LYD3_k127_3824423_1 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 5.11e-201 633.0
LYD3_k127_38873_0 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006767 304.0
LYD3_k127_38873_1 DNA ligase K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 293.0
LYD3_k127_38873_2 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006414 263.0
LYD3_k127_38873_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000001272 175.0
LYD3_k127_38873_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000001956 171.0
LYD3_k127_38873_5 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000003046 160.0
LYD3_k127_3888678_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 398.0
LYD3_k127_3888678_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.000000000000000000000000000000000000000000000000000000002112 208.0
LYD3_k127_3888678_2 RNase H - - - 0.000000000000000000000000001686 123.0
LYD3_k127_3888678_3 GIY-YIG catalytic domain K07461 - - 0.00000000001709 74.0
LYD3_k127_390374_0 Peptidase U62 modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 536.0
LYD3_k127_390374_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000001738 269.0
LYD3_k127_390374_2 Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000001931 248.0
LYD3_k127_3925776_0 CO dehydrogenase acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000002812 267.0
LYD3_k127_3925776_1 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000004182 192.0
LYD3_k127_3925776_2 toxin-antitoxin pair type II binding - - - 0.000000000000000000001226 97.0
LYD3_k127_4003135_0 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000000000005796 149.0
LYD3_k127_4003135_1 lactoylglutathione lyase activity - - - 0.0000000000000000007138 89.0
LYD3_k127_4003135_2 Protein of unknown function DUF116 K09729 - - 0.000159 53.0
LYD3_k127_4018442_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003928 549.0
LYD3_k127_4018442_1 Aconitase C-terminal domain K01681 - 4.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 531.0
LYD3_k127_4018442_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005899 447.0
LYD3_k127_4018442_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 342.0
LYD3_k127_4018442_4 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000001936 232.0
LYD3_k127_4018442_5 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000005909 191.0
LYD3_k127_4024970_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 6.926e-236 739.0
LYD3_k127_4024970_1 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 531.0
LYD3_k127_4024970_10 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000000000003952 138.0
LYD3_k127_4024970_11 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000003966 124.0
LYD3_k127_4024970_12 PFAM response regulator receiver - - - 0.0000007783 59.0
LYD3_k127_4024970_13 curli production assembly transport component CsgG - - - 0.000002817 60.0
LYD3_k127_4024970_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000845 459.0
LYD3_k127_4024970_3 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 424.0
LYD3_k127_4024970_4 ACT domain K00928 - 2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 405.0
LYD3_k127_4024970_5 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 355.0
LYD3_k127_4024970_6 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001149 293.0
LYD3_k127_4024970_7 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000003132 262.0
LYD3_k127_4024970_8 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.000000000000000000000000000000000000000000000000000000000001605 213.0
LYD3_k127_4024970_9 Cytidylyltransferase family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000001774 203.0
LYD3_k127_40252_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 440.0
LYD3_k127_40252_1 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000006214 266.0
LYD3_k127_40252_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000004052 187.0
LYD3_k127_40252_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000115 182.0
LYD3_k127_40252_4 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.00000000003473 63.0
LYD3_k127_4062763_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 537.0
LYD3_k127_4062763_1 transcriptional regulator containing an HTH domain fused to a Zn-ribbon K07743 - - 0.00000000000000000000000000000001365 130.0
LYD3_k127_4067046_0 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000007357 205.0
LYD3_k127_4067046_1 PFAM Phosphate-selective porin O and P - - - 0.000000000000000000000000000000001551 131.0
LYD3_k127_4067046_2 Type II secretion system (T2SS), protein J K02459 - - 0.00000000000000000000000001469 117.0
LYD3_k127_4067046_3 Prokaryotic N-terminal methylation motif K02457 - - 0.0000000000000000000001172 104.0
LYD3_k127_4067046_4 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.000000000003643 78.0
LYD3_k127_4067046_5 Prokaryotic N-terminal methylation motif K02458 - - 0.00000000008684 67.0
LYD3_k127_4067046_7 Type II secretion system (T2SS), protein K K02460 - - 0.00000002788 65.0
LYD3_k127_4079331_0 DHHA2 domain K15986 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007451 578.0
LYD3_k127_4079331_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002026 266.0
LYD3_k127_4079331_2 - - - - 0.0000000000000000000000003277 105.0
LYD3_k127_4079558_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 400.0
LYD3_k127_4079558_1 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000312 254.0
LYD3_k127_4079558_2 riboflavin synthase, alpha subunit K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.00000000000000000002201 93.0
LYD3_k127_4080851_0 PFAM Prenyltransferase squalene oxidase K01852,K06045 - 4.2.1.129,5.4.99.17,5.4.99.7 3.221e-242 765.0
LYD3_k127_4080851_1 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 570.0
LYD3_k127_4080851_2 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 412.0
LYD3_k127_4080851_3 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005291 394.0
LYD3_k127_4080851_4 TIGRFAM hopanoid biosynthesis associated glycosyl transferase protein HpnI K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005247 283.0
LYD3_k127_4080851_5 Carotenoid biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003871 261.0
LYD3_k127_4080851_6 YdjC-like protein - - - 0.00000000000000000000000000000000000000000000000001089 192.0
LYD3_k127_4080851_7 EamA-like transporter family - - - 0.000000000000000000302 94.0
LYD3_k127_4080851_8 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively K01243 - 3.2.2.9 0.000000000832 68.0
LYD3_k127_4085294_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin - - - 0.0 1952.0
LYD3_k127_4085294_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 306.0
LYD3_k127_4085294_2 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004406 264.0
LYD3_k127_4085294_3 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000006817 182.0
LYD3_k127_4085294_4 - - - - 0.00005115 51.0
LYD3_k127_4098367_0 Histidine kinase K07641,K07642,K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000001253 274.0
LYD3_k127_4098367_1 phosphatidate phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001931 264.0
LYD3_k127_4098367_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004214 247.0
LYD3_k127_4098367_3 MraZ protein, putative antitoxin-like K03925 - - 0.00000000000000000000000000000000000000000000007078 173.0
LYD3_k127_4098367_4 RNA-binding protein containing a PIN domain K06962 - - 0.000000000000000000000000000000001181 135.0
LYD3_k127_4098367_5 Belongs to the UPF0235 family K09131 - - 0.000000000000003262 78.0
LYD3_k127_4098367_6 Chemotaxis sensory transducer K03406 - - 0.00000000001197 68.0
LYD3_k127_4098367_7 - - - - 0.0000004912 59.0
LYD3_k127_410598_0 Belongs to the glycosyl hydrolase 57 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008616 396.0
LYD3_k127_410598_1 PFAM GCN5-related N-acetyltransferase K03824 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 308.0
LYD3_k127_410598_2 COG0564 Pseudouridylate synthases, 23S RNA-specific K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000008563 268.0
LYD3_k127_410598_3 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000004143 162.0
LYD3_k127_410598_4 Smr domain - - - 0.00000000000000000000000000006391 119.0
LYD3_k127_410598_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000002275 95.0
LYD3_k127_410598_6 signal transduction histidine kinase - - - 0.000000000001135 75.0
LYD3_k127_4118905_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1250.0
LYD3_k127_4118905_1 Fructose-bisphosphate aldolase class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 607.0
LYD3_k127_4118905_10 redox protein regulator of disulfide bond formation K07397 - - 0.00000000000000000002749 96.0
LYD3_k127_4118905_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 403.0
LYD3_k127_4118905_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 364.0
LYD3_k127_4118905_4 - - - - 0.0000000000000000000000000000000000000000000000000000006908 202.0
LYD3_k127_4118905_5 PFAM Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000001231 177.0
LYD3_k127_4118905_6 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000491 168.0
LYD3_k127_4118905_7 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000000000000000000001226 150.0
LYD3_k127_4118905_8 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000001428 138.0
LYD3_k127_4118905_9 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding K13640 GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000008491 128.0
LYD3_k127_4135278_0 Histidine kinase-like ATPases - - - 0.00000000005817 74.0
LYD3_k127_4135278_1 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain K07720 - - 0.00003671 55.0
LYD3_k127_4173224_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 431.0
LYD3_k127_4173224_1 Transcriptional regulator - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003964 381.0
LYD3_k127_4173224_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000001223 237.0
LYD3_k127_4173224_3 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000886 227.0
LYD3_k127_4173224_4 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000008442 98.0
LYD3_k127_4193886_0 5-formyltetrahydrofolate cyclo-ligase activity K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191 466.0
LYD3_k127_4193886_1 AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 440.0
LYD3_k127_4193886_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 308.0
LYD3_k127_4193886_3 Peptidase family M23 - - - 0.00000000000000000000000000000000004125 138.0
LYD3_k127_419544_0 Nicotinic acid phosphoribosyltransferase K00763 - 6.3.4.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006195 561.0
LYD3_k127_419544_1 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000004684 229.0
LYD3_k127_419544_3 transposase activity - - - 0.0000000006291 61.0
LYD3_k127_41992_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 5.804e-216 681.0
LYD3_k127_41992_1 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005796 258.0
LYD3_k127_41992_2 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000002503 88.0
LYD3_k127_41992_3 N-Acetylmuramoyl-L-alanine amidase K01448,K02172 - 3.5.1.28 0.0000000000000003735 81.0
LYD3_k127_4211533_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 511.0
LYD3_k127_4211533_1 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 326.0
LYD3_k127_4211533_2 NUDIX domain K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000417 181.0
LYD3_k127_4211533_3 MgtC family K07507 - - 0.000000000000000000000000000000000001104 147.0
LYD3_k127_4211533_4 Cobalt transport protein K02008 - - 0.000000000000000000000000006383 113.0
LYD3_k127_4211533_6 PIN domain - - - 0.0000000000008787 74.0
LYD3_k127_4236747_0 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 387.0
LYD3_k127_4236747_1 COG1233 Phytoene dehydrogenase and related proteins K09516,K09835 - 1.3.99.23,5.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 355.0
LYD3_k127_4236747_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001943 311.0
LYD3_k127_4236747_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002286 262.0
LYD3_k127_4236747_4 COG1233 Phytoene dehydrogenase and related proteins K09516,K09835 - 1.3.99.23,5.2.1.13 0.0000000000000000000000000000000000002957 146.0
LYD3_k127_4236747_5 Branched-chain amino acid ABC transporter, ATP-binding protein K01996 - - 0.0000000000000000000000000000461 117.0
LYD3_k127_4236747_6 - - - - 0.00000000000001092 77.0
LYD3_k127_42402_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1022.0
LYD3_k127_42402_1 denitrification pathway K02569,K15876 - - 0.000000000000000000000000000000000000000000000000158 190.0
LYD3_k127_42402_3 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000002615 82.0
LYD3_k127_4263323_0 L,D-transpeptidase catalytic domain K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000926 428.0
LYD3_k127_4263323_1 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000000000001958 194.0
LYD3_k127_4263323_2 PIN domain - - - 0.000000000000000000000000000000002421 133.0
LYD3_k127_4263323_3 - K21495 - - 0.00000000001151 67.0
LYD3_k127_4268649_0 Glycosyl hydrolase family 57 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004536 513.0
LYD3_k127_4275976_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 402.0
LYD3_k127_4275976_1 Polyprenyl synthetase K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 342.0
LYD3_k127_4275976_2 ferrous iron binding K06990,K09141 - - 0.0000000000000000000000000000000000000000000001181 175.0
LYD3_k127_4275976_3 Natural resistance-associated macrophage protein - - - 0.0000000000000000000000001803 110.0
LYD3_k127_4298896_0 Cation transporter/ATPase, N-terminus K01531,K12955 - 3.6.3.2 7.132e-208 653.0
LYD3_k127_4298896_1 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009903 554.0
LYD3_k127_4298896_2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 526.0
LYD3_k127_4298896_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000007109 209.0
LYD3_k127_4298896_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000001926 181.0
LYD3_k127_4298896_5 cheY-homologous receiver domain - - - 0.000000000000000000000000000001013 125.0
LYD3_k127_4298896_6 S4 domain K14761 - - 0.000000000000000000002283 95.0
LYD3_k127_4298896_7 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.0000000000000000004303 92.0
LYD3_k127_4303508_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008033 548.0
LYD3_k127_4303508_1 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 355.0
LYD3_k127_4303508_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000222 242.0
LYD3_k127_4303508_3 GYD domain - - - 0.000000000000000000000000000000000001927 139.0
LYD3_k127_4303508_4 sulfur carrier activity K04085 - - 0.00000000000000000000000117 104.0
LYD3_k127_4303508_5 - - - - 0.00000089 51.0
LYD3_k127_4306631_0 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 340.0
LYD3_k127_4306631_1 Universal stress protein family - - - 0.0000000000000000000000000000000000000005794 156.0
LYD3_k127_4306631_2 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000001199 152.0
LYD3_k127_4306631_3 proteolysis K03665 - - 0.00000000000000002147 85.0
LYD3_k127_4352076_0 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000008014 151.0
LYD3_k127_4352076_1 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000816 135.0
LYD3_k127_4352076_2 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000004687 126.0
LYD3_k127_4352076_3 phosphorelay signal transduction system - - - 0.0000000000000000000000000000267 121.0
LYD3_k127_4361941_0 Domain of unknown function (DUF3786) - - - 0.00000000000000000000000000000000000000000004532 167.0
LYD3_k127_4361941_1 Universal stress protein family K07090 - - 0.0000000000000000000000000000000003811 139.0
LYD3_k127_4361941_2 Universal stress protein family K07090 - - 0.000000000003251 68.0
LYD3_k127_4364987_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL-like protein K07303 - 1.3.99.16 8.55e-250 791.0
LYD3_k127_4364987_1 DEAD DEAH box helicase domain protein K03654 - 3.6.4.12 2.369e-220 698.0
LYD3_k127_4364987_10 HD domain K06950 - - 0.00000000000000000000000000000000000000000000000000002076 195.0
LYD3_k127_4364987_11 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000000000006693 184.0
LYD3_k127_4364987_12 sulfate assimilation K00958 - 2.7.7.4 0.0000000000000000003048 88.0
LYD3_k127_4364987_2 Mechanosensitive ion channel K03442 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003421 402.0
LYD3_k127_4364987_3 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 343.0
LYD3_k127_4364987_4 PFAM DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002777 279.0
LYD3_k127_4364987_5 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006762 246.0
LYD3_k127_4364987_6 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000004107 232.0
LYD3_k127_4364987_7 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000003628 231.0
LYD3_k127_4364987_8 Protein of unknown function (DUF1499) - - - 0.0000000000000000000000000000000000000000000000000000000000000000572 230.0
LYD3_k127_4364987_9 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000001611 226.0
LYD3_k127_4374117_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 1.703e-256 808.0
LYD3_k127_4374117_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 532.0
LYD3_k127_4374117_2 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006559 372.0
LYD3_k127_4374117_3 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000003118 160.0
LYD3_k127_4374117_4 Glu-tRNAGln amidotransferase C subunit K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000001645 111.0
LYD3_k127_4386628_0 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 390.0
LYD3_k127_4386628_1 Branched-chain amino acid transport system / permease component K01997 GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015179,GO:0015188,GO:0015190,GO:0015192,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015820,GO:0015823,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0043090,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0089718,GO:0098655,GO:0098656,GO:0098657,GO:0098713,GO:0098739,GO:1902475,GO:1903714,GO:1903785,GO:1903825,GO:1905039 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009162 369.0
LYD3_k127_4386628_2 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 GO:0003333,GO:0003674,GO:0005215,GO:0005304,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015179,GO:0015188,GO:0015192,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015803,GO:0015804,GO:0015807,GO:0015818,GO:0015823,GO:0015829,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042221,GO:0042493,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098655,GO:0098656,GO:1902475,GO:1903714,GO:1903785,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 317.0
LYD3_k127_4386628_3 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003065 282.0
LYD3_k127_4386628_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005193 266.0
LYD3_k127_4386628_5 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000003346 154.0
LYD3_k127_4386628_6 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000006881 68.0
LYD3_k127_4392784_0 COGs COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 367.0
LYD3_k127_4392784_1 homoserine kinase type II (Protein kinase fold) - - - 0.000000000000001336 81.0
LYD3_k127_4405039_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006888 521.0
LYD3_k127_4405039_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005351 357.0
LYD3_k127_4405039_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 322.0
LYD3_k127_4405039_3 PFAM NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 286.0
LYD3_k127_4405039_4 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000003952 166.0
LYD3_k127_4416933_0 TIGRFAM molybdenum cofactor synthesis K03750,K07219 - 2.10.1.1 3.57e-244 769.0
LYD3_k127_4416933_1 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007133 370.0
LYD3_k127_4416933_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000005153 159.0
LYD3_k127_4450873_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 601.0
LYD3_k127_4450873_1 N-Acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009929 478.0
LYD3_k127_4450873_10 PFAM Cobalt transport protein K16785 - - 0.00008145 53.0
LYD3_k127_4450873_2 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 437.0
LYD3_k127_4450873_3 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 336.0
LYD3_k127_4450873_4 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000069 256.0
LYD3_k127_4450873_5 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004383 246.0
LYD3_k127_4450873_6 Signal transduction histidine kinase, nitrogen specific, NtrB K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000001896 239.0
LYD3_k127_4450873_7 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000009778 138.0
LYD3_k127_4450873_8 iron-sulfur cluster assembly - - - 0.000000000000000000000001907 104.0
LYD3_k127_4467637_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 311.0
LYD3_k127_4467637_1 - - - - 0.0000000000000000000000001385 121.0
LYD3_k127_4467637_2 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000009122 117.0
LYD3_k127_451934_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 467.0
LYD3_k127_451934_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 379.0
LYD3_k127_451934_2 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0000000000000000005508 89.0
LYD3_k127_45434_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 2.808e-277 874.0
LYD3_k127_45434_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 510.0
LYD3_k127_45434_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 340.0
LYD3_k127_45434_3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000004817 180.0
LYD3_k127_45434_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000005734 179.0
LYD3_k127_45434_5 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000003605 160.0
LYD3_k127_45434_6 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000000000000006488 161.0
LYD3_k127_45434_7 peptidyl-tyrosine sulfation - - - 0.000000005813 69.0
LYD3_k127_4553725_0 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.0000000000000000000000000000000014 139.0
LYD3_k127_4553725_1 protein complex oligomerization - - - 0.000000000000000000000006017 107.0
LYD3_k127_4553725_2 Chaperonin 10 Kd subunit - - - 0.0000000000000001194 80.0
LYD3_k127_4553725_3 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.00000001363 59.0
LYD3_k127_4599605_0 YceI-like domain - - - 0.0000000000000000000000000000000000000003523 156.0
LYD3_k127_4599605_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000000003646 151.0
LYD3_k127_4599605_2 PFAM nitrogen-fixing NifU domain protein - - - 0.00000000000000000000002622 102.0
LYD3_k127_4599605_3 TIGRFAM alkylhydroperoxidase like protein, AhpD family - - - 0.000000000000004737 81.0
LYD3_k127_4619639_0 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 380.0
LYD3_k127_4619639_1 cyclic nucleotide binding K10914 - - 0.0000000000000000000000000000000009928 132.0
LYD3_k127_4619639_2 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000000000000000003336 124.0
LYD3_k127_4619639_3 PFAM amino acid-binding ACT domain protein - - - 0.0000000001452 67.0
LYD3_k127_4619639_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000002588 62.0
LYD3_k127_4624513_0 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000000000000000000000000005141 235.0
LYD3_k127_4650628_0 C-terminal domain of tail specific protease (DUF3340) K03797 - 3.4.21.102 4.962e-222 707.0
LYD3_k127_4650628_1 transcriptional regulator - GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:1990837,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000008369 228.0
LYD3_k127_4650628_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000007112 97.0
LYD3_k127_4651953_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 455.0
LYD3_k127_4651953_1 Adenosine specific kinase K09129 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000035 262.0
LYD3_k127_4651953_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002157 239.0
LYD3_k127_4651953_3 - - - - 0.00000000000000000000000000000000000000000000000000008927 191.0
LYD3_k127_4651953_4 PFAM Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000000000000002045 166.0
LYD3_k127_4651953_5 Histidine biosynthesis bifunctional protein HisIE K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000007043 162.0
LYD3_k127_4651953_7 Phosphoribosyl-AMP cyclohydrolase K01496,K01497,K01523,K01814,K11755 GO:0000105,GO:0000287,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030312,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052803,GO:0071704,GO:0071944,GO:0075136,GO:0075139,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.5.4.25,3.6.1.31,5.3.1.16 0.0000000000000000000000004278 107.0
LYD3_k127_4651953_8 His Kinase A (phosphoacceptor) domain K13598 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.13.3 0.0000000000000000004729 98.0
LYD3_k127_4651953_9 HD domain K07814 - - 0.0000000000000000008876 98.0
LYD3_k127_4652782_0 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 305.0
LYD3_k127_4652782_1 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000002238 238.0
LYD3_k127_4667571_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000001311 224.0
LYD3_k127_4667571_1 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.000000000000000000000000000000000000000000000000002993 191.0
LYD3_k127_4667571_2 - - - - 0.00000000000000000000000000000000000000000000005639 180.0
LYD3_k127_4667571_3 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000006576 141.0
LYD3_k127_4683555_0 SEFIR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 548.0
LYD3_k127_4683555_1 PFAM Radical SAM K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005789 412.0
LYD3_k127_4683555_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006813 381.0
LYD3_k127_4683555_3 SagB-type dehydrogenase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 321.0
LYD3_k127_4683555_4 PAS domain K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 334.0
LYD3_k127_4683555_5 Putative zinc- or iron-chelating domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000671 239.0
LYD3_k127_4683555_6 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000008851 175.0
LYD3_k127_4683555_7 exodeoxyribonuclease VII activity K03602 - 3.1.11.6 0.000000000006347 68.0
LYD3_k127_4683555_8 - - - - 0.0000007169 56.0
LYD3_k127_4686272_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 4.318e-246 768.0
LYD3_k127_4686272_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.067e-236 750.0
LYD3_k127_4686272_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.458e-231 724.0
LYD3_k127_4686272_3 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 509.0
LYD3_k127_4686272_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008827 478.0
LYD3_k127_4686272_5 Polyprenyl synthetase K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326 314.0
LYD3_k127_4686272_6 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000281 275.0
LYD3_k127_4686272_7 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000001106 95.0
LYD3_k127_4686272_8 zinc-ribbon domain - - - 0.000003056 49.0
LYD3_k127_4686272_9 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00004506 51.0
LYD3_k127_4688578_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 494.0
LYD3_k127_4688578_1 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009154 404.0
LYD3_k127_4688578_10 toxin-antitoxin pair type II binding - - - 0.00009889 48.0
LYD3_k127_4688578_11 nucleic acid-binding protein contains PIN domain - - - 0.0003927 49.0
LYD3_k127_4688578_2 Putative Fe-S cluster K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008889 335.0
LYD3_k127_4688578_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000001314 222.0
LYD3_k127_4688578_4 Peptidase S24-like K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000001556 207.0
LYD3_k127_4688578_5 pfam nudix - - - 0.0000000000000000000000000000000000000000000000000000002051 198.0
LYD3_k127_4688578_6 Part of a membrane complex involved in electron transport K03617 - - 0.000000000000000000000000000000000000000000001277 168.0
LYD3_k127_4688578_7 Domain of unknown function (DUF4412) - - - 0.000000000000000000000003188 111.0
LYD3_k127_4688578_8 Zincin-like metallopeptidase - - - 0.0000000000000000000007497 99.0
LYD3_k127_4688578_9 - - - - 0.00000000004707 76.0
LYD3_k127_4688750_0 FtsX-like permease family K02004 - - 2.96e-322 1003.0
LYD3_k127_4688750_1 Sigma-54 interaction domain - - - 1.205e-242 761.0
LYD3_k127_4688750_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 396.0
LYD3_k127_4688750_3 TIGRFAM efflux transporter, RND family, MFP subunit K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 383.0
LYD3_k127_4688750_4 PFAM ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 359.0
LYD3_k127_4688750_5 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 371.0
LYD3_k127_4688750_6 Cyclophilin-like K09143 - - 0.0000000000000000000000000000000000000000000000002186 178.0
LYD3_k127_4688750_7 PFAM Sulfotransferase domain - - - 0.00000000000003864 79.0
LYD3_k127_4695497_0 Extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009439 571.0
LYD3_k127_4695497_1 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003511 449.0
LYD3_k127_4695497_2 PFAM aldo keto reductase K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 441.0
LYD3_k127_4695497_3 ABC-type sugar transport system, permease component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 355.0
LYD3_k127_4695497_4 Binding-protein-dependent transport system inner membrane component K02025,K15771 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 354.0
LYD3_k127_4695497_6 Calcineurin-like phosphoesterase K07096 - - 0.0000000000000000000000000000001401 128.0
LYD3_k127_4695497_7 - - - - 0.0000000000000000000001866 97.0
LYD3_k127_4697236_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 362.0
LYD3_k127_4697236_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 297.0
LYD3_k127_4697236_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004264 281.0
LYD3_k127_4697236_3 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000002213 207.0
LYD3_k127_4697236_4 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000002999 178.0
LYD3_k127_4697236_5 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.000000000000000000000000000000000000000000000009281 175.0
LYD3_k127_4697236_6 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000001187 162.0
LYD3_k127_4697236_7 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.000000000000000000000000000000001229 130.0
LYD3_k127_4697236_8 Ribosomal protein L36 K02919 - - 0.0000000000000009021 76.0
LYD3_k127_4697236_9 Sulphur transport K07112 - - 0.00002177 48.0
LYD3_k127_4699285_0 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007317 254.0
LYD3_k127_4699285_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000388 220.0
LYD3_k127_4699285_2 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000001772 72.0
LYD3_k127_4699285_3 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000000000001482 70.0
LYD3_k127_4699285_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000001141 65.0
LYD3_k127_4720625_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 5.996e-246 773.0
LYD3_k127_4720625_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 578.0
LYD3_k127_4720625_2 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 466.0
LYD3_k127_4736088_0 Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 323.0
LYD3_k127_4736088_1 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000003342 229.0
LYD3_k127_4736088_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000005653 237.0
LYD3_k127_4736088_3 Glycosyl transferase family 2 K12992 - - 0.00000000000000000000000000000000000000000000000009803 201.0
LYD3_k127_4736088_4 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000009404 180.0
LYD3_k127_4736088_5 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000002075 175.0
LYD3_k127_4736088_6 Glycosyltransferase - - - 0.00000000000000000000000000000000000000116 169.0
LYD3_k127_4736088_7 Glycosyltransferase like family 2 K12992 - - 0.00000000000000000000000000000000000008184 153.0
LYD3_k127_4736088_8 PFAM Response regulator receiver domain K07658 - - 0.0000000002907 72.0
LYD3_k127_4751762_0 G-rich domain on putative tyrosine kinase K16554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008348 386.0
LYD3_k127_4751762_1 export protein K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 292.0
LYD3_k127_4751762_2 Putative beta-barrel porin 2 K20920 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001051 291.0
LYD3_k127_4751762_3 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.000000000000000000000000000000000001553 149.0
LYD3_k127_4751762_4 phosphorelay sensor kinase activity - - - 0.000000000000000000000000001094 115.0
LYD3_k127_4755196_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000501 522.0
LYD3_k127_4755196_1 PFAM ABC transporter related K15738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 453.0
LYD3_k127_4755196_2 Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 287.0
LYD3_k127_4755196_3 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000006779 100.0
LYD3_k127_4762952_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 599.0
LYD3_k127_4762952_1 PFAM Uncharacterised protein family UPF0182 K09118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 533.0
LYD3_k127_4762952_2 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000001115 175.0
LYD3_k127_4762952_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000003057 140.0
LYD3_k127_4762952_4 Transposase K07483 - - 0.0000005274 57.0
LYD3_k127_4768866_0 Surface antigen K07277 - - 2.979e-261 827.0
LYD3_k127_4768866_1 Nitrite and sulphite reductase 4Fe-4S K11180 - 1.8.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000686 582.0
LYD3_k127_4768866_2 Nitrite and sulphite reductase 4Fe-4S K11181 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 550.0
LYD3_k127_4768866_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 392.0
LYD3_k127_4768866_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 359.0
LYD3_k127_4768866_5 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000000000000004117 205.0
LYD3_k127_4768866_6 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000007755 168.0
LYD3_k127_4768866_7 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000000000000004758 102.0
LYD3_k127_4768866_8 Protein of unknown function (DUF1009) K00748,K09949 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008758,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000002292 79.0
LYD3_k127_4772137_0 Chemotaxis sensory transducer K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 424.0
LYD3_k127_4772137_1 PFAM CheR methyltransferase, SAM binding domain K00575 - 2.1.1.80 0.000004284 53.0
LYD3_k127_4793596_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 454.0
LYD3_k127_4793596_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 386.0
LYD3_k127_4793596_2 Yip1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004062 243.0
LYD3_k127_4793596_3 Protein of unknown function (DUF815) K06923 - - 0.0000000000000000000000000000000000000000000000000000000000000000000139 243.0
LYD3_k127_4793596_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000002568 231.0
LYD3_k127_4793596_5 PFAM aminotransferase class I and II K04720 - 4.1.1.81 0.0000000000000000000000000000000000000000002345 172.0
LYD3_k127_4793596_6 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000001977 147.0
LYD3_k127_4793596_8 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 - 2.1.1.200,3.5.1.19,6.1.1.16 0.00004851 46.0
LYD3_k127_4802530_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 7.413e-231 721.0
LYD3_k127_4802530_1 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 608.0
LYD3_k127_4802530_10 Cytidylate kinase-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009615 250.0
LYD3_k127_4802530_11 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000000000000000000000000000000000000000000001635 202.0
LYD3_k127_4802530_12 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000000000000000008216 190.0
LYD3_k127_4802530_13 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000001493 168.0
LYD3_k127_4802530_14 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000003945 99.0
LYD3_k127_4802530_15 PFAM Methylamine - - - 0.000000000000000264 85.0
LYD3_k127_4802530_16 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000002008 61.0
LYD3_k127_4802530_17 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000007749 64.0
LYD3_k127_4802530_2 family UPF0324 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004033 583.0
LYD3_k127_4802530_3 GAF domain K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 542.0
LYD3_k127_4802530_4 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009713 499.0
LYD3_k127_4802530_5 7TM receptor with intracellular HD hydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008629 498.0
LYD3_k127_4802530_6 PhoH-like protein K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 391.0
LYD3_k127_4802530_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 322.0
LYD3_k127_4802530_8 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006118 271.0
LYD3_k127_4802530_9 Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000001635 252.0
LYD3_k127_4803039_0 Sigma-54 interaction domain K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 392.0
LYD3_k127_4803039_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000646 359.0
LYD3_k127_4803039_2 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 317.0
LYD3_k127_4803039_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 305.0
LYD3_k127_4803039_4 HEAT repeats - - - 0.00000000000000000000000000000000000000000000006242 188.0
LYD3_k127_4803039_5 Response regulator receiver domain K03413 - - 0.00000000000000000000000000000000000000000002378 164.0
LYD3_k127_4803039_6 thiolester hydrolase activity - - - 0.00000000000000000000000000002351 122.0
LYD3_k127_4819050_0 Ferredoxin K05337 - - 0.0000000000000002777 80.0
LYD3_k127_4819050_1 SEC-C Motif Domain Protein - - - 0.000000003359 66.0
LYD3_k127_4819050_2 Aminotransferase class I and II K00817 - 2.6.1.9 0.0001643 45.0
LYD3_k127_482545_0 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 501.0
LYD3_k127_482545_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 497.0
LYD3_k127_482545_10 Glucose / Sorbosone dehydrogenase - - - 0.0006629 48.0
LYD3_k127_482545_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.000000000000000000000000000000000000001631 148.0
LYD3_k127_482545_3 CHRD domain - - - 0.0000000000000000000000000000000000007377 145.0
LYD3_k127_482545_4 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008104,GO:0008150,GO:0009966,GO:0010646,GO:0010738,GO:0023051,GO:0033036,GO:0034237,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051018,GO:0051179,GO:0065007,GO:1902531 3.1.4.58 0.000000000000000000000000000000000001153 150.0
LYD3_k127_482545_5 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.0000000000000000000000000000001958 130.0
LYD3_k127_482545_6 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000000000247 127.0
LYD3_k127_482545_7 PQ loop repeat K15383 - - 0.00000000000000000000147 98.0
LYD3_k127_482545_8 outer membrane efflux protein K18139 - - 0.0000000000000000002902 88.0
LYD3_k127_482545_9 Modulates RecA activity K03565,K19002 GO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019899,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496 2.4.1.337 0.000000000000001461 82.0
LYD3_k127_4838296_0 PFAM ABC transporter K01990,K01992,K09695 - - 1.35e-241 761.0
LYD3_k127_4838296_1 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 602.0
LYD3_k127_4838296_10 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005957 267.0
LYD3_k127_4838296_11 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000001594 224.0
LYD3_k127_4838296_12 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000009222 221.0
LYD3_k127_4838296_13 ferroxidase activity K03594 GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0009987,GO:0019725,GO:0030003,GO:0042592,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0097577,GO:0098771 1.16.3.1 0.00000000000000000000000000000000000001235 149.0
LYD3_k127_4838296_14 domain protein - - - 0.000000000000000003077 100.0
LYD3_k127_4838296_15 - K07092 - - 0.00008467 50.0
LYD3_k127_4838296_16 - K07272,K20543,K21007 - - 0.0002622 49.0
LYD3_k127_4838296_17 Membrane - - - 0.0002898 54.0
LYD3_k127_4838296_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 523.0
LYD3_k127_4838296_3 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 501.0
LYD3_k127_4838296_4 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K12267 - 1.8.4.11,1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 477.0
LYD3_k127_4838296_5 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 421.0
LYD3_k127_4838296_6 PFAM ATP-binding region ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 409.0
LYD3_k127_4838296_7 PFAM secretion protein HlyD family protein K01993,K16922 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 351.0
LYD3_k127_4838296_8 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 337.0
LYD3_k127_4838296_9 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 319.0
LYD3_k127_4858359_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 472.0
LYD3_k127_4858359_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 412.0
LYD3_k127_4858359_2 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000001801 195.0
LYD3_k127_4858359_3 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.0000000000000000000000000000000000000000002858 161.0
LYD3_k127_486509_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004191 268.0
LYD3_k127_486509_1 pyridine nucleotide-disulphide oxidoreductase dimerisation K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000002445 266.0
LYD3_k127_486509_2 - - - - 0.000000000000000000000000000000003158 145.0
LYD3_k127_4865732_0 phosphorelay signal transduction system K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004116 426.0
LYD3_k127_4865732_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000236 107.0
LYD3_k127_4865732_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000009111 71.0
LYD3_k127_4865732_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000003223 51.0
LYD3_k127_4888625_0 PFAM DAHP synthetase I KDSA K03856,K04516 - 2.5.1.54,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 426.0
LYD3_k127_4888625_1 Thioredoxin K03672 - 1.8.1.8 0.00000000000000000000000000001693 122.0
LYD3_k127_4888625_2 - - - - 0.0003393 47.0
LYD3_k127_4901200_0 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 1.006e-212 669.0
LYD3_k127_4901200_1 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000005891 163.0
LYD3_k127_4901200_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.00000000000004781 77.0
LYD3_k127_4914692_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005175 430.0
LYD3_k127_4914692_1 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000000000001002 141.0
LYD3_k127_4914692_2 Belongs to the peptidase M16 family - - - 0.000000004566 59.0
LYD3_k127_4914757_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 537.0
LYD3_k127_4914757_1 PFAM AICARFT IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000008903 168.0
LYD3_k127_4914757_2 HD domain K07023 - - 0.000000000000000000006986 92.0
LYD3_k127_4916262_0 Sigma factor PP2C-like phosphatases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 563.0
LYD3_k127_4916262_1 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000000000000000004146 238.0
LYD3_k127_4916262_2 FAD linked oxidase - - - 0.000000000000000000001032 96.0
LYD3_k127_4925728_0 Lipid A core-O-antigen ligase-like enyme K18814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006726 387.0
LYD3_k127_4925728_1 Chain length determinant protein K16554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 332.0
LYD3_k127_4931335_0 YmdB-like protein K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 336.0
LYD3_k127_4931335_1 FecR protein - - - 0.000000000000000007038 93.0
LYD3_k127_4931335_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000003652 88.0
LYD3_k127_4931335_4 cell envelope organization K05807,K08309 - - 0.0000007557 60.0
LYD3_k127_4931335_5 PKD domain - - - 0.0000221 57.0
LYD3_k127_4931335_6 FecR protein - - - 0.0006809 48.0
LYD3_k127_5003416_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 388.0
LYD3_k127_5003416_1 PFAM Rieske 2Fe-2S K02636 - 1.10.9.1 0.000000000000000000000000000077 120.0
LYD3_k127_5003416_2 organic phosphonate transport K02044 - - 0.0000000000000000000000001318 115.0
LYD3_k127_5003416_3 heat shock protein binding - - - 0.00000000000005045 77.0
LYD3_k127_5003416_4 - - - - 0.00000000008027 65.0
LYD3_k127_50070_0 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001474 293.0
LYD3_k127_50194_0 Ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008916 410.0
LYD3_k127_50194_1 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 374.0
LYD3_k127_50194_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004864 339.0
LYD3_k127_50194_3 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009232 269.0
LYD3_k127_50194_4 histidine kinase, HAMP K07642 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000003037 249.0
LYD3_k127_5022291_0 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.00000000000000000000000000000000000000001609 161.0
LYD3_k127_5022291_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000000000000000000000000000000008107 147.0
LYD3_k127_5022291_2 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000001114 104.0
LYD3_k127_5041870_0 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000002442 160.0
LYD3_k127_5041870_1 PIN domain K07063 - - 0.00000000000000000000000000000000001085 139.0
LYD3_k127_5041870_2 Uncharacterized conserved protein (DUF2196) - - - 0.000000000000000000000007073 101.0
LYD3_k127_5041870_3 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.00000000000000000006381 91.0
LYD3_k127_5041870_4 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000105 83.0
LYD3_k127_5056373_0 PFAM Type II secretion system protein E K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 571.0
LYD3_k127_5056373_1 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 444.0
LYD3_k127_5070626_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 3.278e-196 617.0
LYD3_k127_5070626_1 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 296.0
LYD3_k127_5070626_2 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000004116 186.0
LYD3_k127_5070626_3 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000001184 139.0
LYD3_k127_507124_0 Alpha-glucan water dikinase K08244 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009631,GO:0009941,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0031967,GO:0031975,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050521,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:1901575 2.7.9.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002529 528.0
LYD3_k127_507124_1 Phosphoglucan, water dikinase K15535 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019200,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046777,GO:0046835,GO:0051752,GO:0071704,GO:1901564,GO:1901575 2.7.9.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 384.0
LYD3_k127_507124_2 Xylose isomerase-like TIM barrel - - - 0.00003841 57.0
LYD3_k127_5111750_0 - - - - 0.000000000000000000000000000000000000000000000000000001702 211.0
LYD3_k127_5111750_1 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000008307 178.0
LYD3_k127_5111750_2 - - - - 0.000000000000000000000000000000000000005054 151.0
LYD3_k127_5111750_3 Cytochrome c - - - 0.0000000000000000002246 102.0
LYD3_k127_5111750_4 Multicopper oxidase - - - 0.0000000000006324 77.0
LYD3_k127_511219_0 Alpha amylase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009837 543.0
LYD3_k127_511219_1 Phosphoglucan, water dikinase K15535 GO:0000272,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019200,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046777,GO:0046835,GO:0051752,GO:0071704,GO:1901564,GO:1901575 2.7.9.5 0.000000000000000000000000000000000000000000000000000000000000000000000000001649 269.0
LYD3_k127_512438_0 Sigma-54 interaction domain K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002851 373.0
LYD3_k127_512438_1 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 336.0
LYD3_k127_512438_2 PFAM ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001708 293.0
LYD3_k127_512438_3 histidine kinase HAMP region domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000005286 236.0
LYD3_k127_512438_4 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000009651 202.0
LYD3_k127_512438_5 Predicted membrane protein (DUF2318) - - - 0.0000000000000000000000002639 112.0
LYD3_k127_5133309_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 356.0
LYD3_k127_5133309_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000237 166.0
LYD3_k127_5133309_2 Transport permease protein K01992 - - 0.0000000000000000000000000001959 118.0
LYD3_k127_5154678_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008786 372.0
LYD3_k127_5154678_1 HD domain - - - 0.000000000000000000000000000000000000000000001634 179.0
LYD3_k127_5157957_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 4.292e-196 616.0
LYD3_k127_5157957_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009601 345.0
LYD3_k127_5157957_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 312.0
LYD3_k127_5157957_3 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000000000000000002181 219.0
LYD3_k127_5157957_4 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000000008614 198.0
LYD3_k127_5157957_5 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000001373 171.0
LYD3_k127_5157957_6 Belongs to the UPF0296 family K09777 - - 0.00000000000000000000000002723 111.0
LYD3_k127_5192798_0 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002904 391.0
LYD3_k127_5192798_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 298.0
LYD3_k127_5192798_2 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003094 259.0
LYD3_k127_5192798_3 Domain of unknown function (DUF2703) - - - 0.0000000000000000000000000000000000000000000000000002772 187.0
LYD3_k127_5192798_4 TPM domain - - - 0.000000000000000000000000000000000000000000000000007885 188.0
LYD3_k127_5192798_5 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000000004668 138.0
LYD3_k127_5192798_6 copG family - - - 0.00000000000000000000000000000000003207 136.0
LYD3_k127_5192798_8 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000001122 73.0
LYD3_k127_5215291_0 Cation transporter/ATPase, N-terminus K01531,K12955 - 3.6.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 613.0
LYD3_k127_5215291_1 PFAM Cobyrinic acid ac-diamide synthase K07321 - - 0.000000000000000000000001518 105.0
LYD3_k127_521812_0 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 535.0
LYD3_k127_521812_1 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 523.0
LYD3_k127_521812_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008322 428.0
LYD3_k127_521812_3 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000324 329.0
LYD3_k127_523121_0 Belongs to the aldehyde dehydrogenase family K13821 - 1.2.1.88,1.5.5.2 0.0 1022.0
LYD3_k127_523121_1 DoxX K15977 - - 0.0000000000000000000000000000000000000000000000000000002367 197.0
LYD3_k127_523121_2 Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1 - - - 0.000000000000000008735 89.0
LYD3_k127_5280788_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 350.0
LYD3_k127_5280788_1 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007934 270.0
LYD3_k127_5280788_2 Metal-dependent phosphohydrolase - - - 0.000000000000000000000000000000000000000000000000000000001322 209.0
LYD3_k127_5280788_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000001108 198.0
LYD3_k127_5280788_4 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000002457 197.0
LYD3_k127_5280788_5 Biopolymer transport protein ExbD/TolR K03560 - - 0.00000000000000000000000000000000000001896 153.0
LYD3_k127_5280788_6 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000007396 146.0
LYD3_k127_5280788_7 Outer membrane lipoprotein - - - 0.000000000000000000000000000000000004449 149.0
LYD3_k127_5280788_8 energy transducer activity K03646,K03832 - - 0.0000000000003204 78.0
LYD3_k127_5298282_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 359.0
LYD3_k127_5298282_1 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 340.0
LYD3_k127_5298282_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 293.0
LYD3_k127_5298282_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004987 248.0
LYD3_k127_5298282_4 Tetratricopeptide repeat K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000003774 235.0
LYD3_k127_5298282_5 Sirohaem biosynthesis protein central K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000002787 175.0
LYD3_k127_5298282_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000001483 52.0
LYD3_k127_5303127_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 524.0
LYD3_k127_5303127_1 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008365 329.0
LYD3_k127_5303127_2 Pfam:Arch_ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 288.0
LYD3_k127_5303127_3 PFAM response regulator receiver K03413 - - 0.000000000000000000000000000000000000003253 149.0
LYD3_k127_5303127_4 regulator, PATAN and FRGAF domain-containing - - - 0.0000000000000000000000000000008734 127.0
LYD3_k127_5303127_5 regulator, PATAN and FRGAF domain-containing - - - 0.000000000000000000000000004891 118.0
LYD3_k127_5303127_6 PFAM CheW domain protein K03408 - - 0.0000000000000000000002143 106.0
LYD3_k127_5303127_7 Chemotaxis sensory transducer K03406 - - 0.00000000000000002399 94.0
LYD3_k127_5303127_8 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000002036 74.0
LYD3_k127_5362484_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 494.0
LYD3_k127_5362484_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012,K00066,K02472,K02474,K13015 - 1.1.1.132,1.1.1.136,1.1.1.22,1.1.1.336 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 467.0
LYD3_k127_5362484_2 GDP-mannose 4,6 dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007019 425.0
LYD3_k127_5362484_3 Glycosyltransferase family 9 (heptosyltransferase) K02841,K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 330.0
LYD3_k127_5362484_4 COGs COG0463 Glycosyltransferase involved in cell wall biogenesis K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001614 280.0
LYD3_k127_5362484_5 PFAM Carboxymuconolactone decarboxylase - - - 0.00000000000000000000000000000000001131 138.0
LYD3_k127_5362484_6 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000001704 137.0
LYD3_k127_5362484_7 - - - - 0.00000000000000000000000001561 112.0
LYD3_k127_5362484_8 C-terminal four TMM region of protein-O-mannosyltransferase - - - 0.000000000000654 81.0
LYD3_k127_5362484_9 - - - - 0.00008354 49.0
LYD3_k127_5369718_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.12e-202 640.0
LYD3_k127_5369718_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006254 488.0
LYD3_k127_5369718_2 glutaminyl-tRNA K01886 - 6.1.1.18 0.0000000000000000000000000000000000000000000000000000007297 195.0
LYD3_k127_5369718_3 Domain of unknown function (DUF4115) - - - 0.00000000000116 76.0
LYD3_k127_5375132_0 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 5.711e-205 646.0
LYD3_k127_5375132_1 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052 461.0
LYD3_k127_5375132_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 294.0
LYD3_k127_5375132_3 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.00000000000000000000000000000000000000000002395 164.0
LYD3_k127_5375132_4 diguanylate cyclase - - - 0.00000000000000000000000000000000002644 153.0
LYD3_k127_5375132_5 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000001933 98.0
LYD3_k127_5379256_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1060.0
LYD3_k127_5379256_1 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 4.455e-268 839.0
LYD3_k127_5379256_10 translation release factor activity - - - 0.0000000000000000000000000000000000000008378 151.0
LYD3_k127_5379256_11 1,4-alpha-glucan branching enzyme activity - - - 0.000000000000000000000000000001772 126.0
LYD3_k127_5379256_12 RDD family - - - 0.00000000000000000000000002343 113.0
LYD3_k127_5379256_13 SMART Cold shock protein K03704 - - 0.000000000000000000000001952 103.0
LYD3_k127_5379256_14 exodeoxyribonuclease I activity - - - 0.0000000000001043 74.0
LYD3_k127_5379256_15 - - - - 0.000000008711 59.0
LYD3_k127_5379256_2 COG0058 Glucan phosphorylase - - - 2.008e-258 807.0
LYD3_k127_5379256_3 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003105 434.0
LYD3_k127_5379256_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 412.0
LYD3_k127_5379256_5 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004875 380.0
LYD3_k127_5379256_6 PFAM GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000111 270.0
LYD3_k127_5379256_7 endonuclease III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002931 254.0
LYD3_k127_5379256_8 inositol monophosphate 1-phosphatase activity K01082,K01092 - 3.1.3.25,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000006221 225.0
LYD3_k127_5379256_9 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000001307 169.0
LYD3_k127_5384669_0 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 334.0
LYD3_k127_5384669_1 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000124 221.0
LYD3_k127_5384669_2 6-carboxyhexanoate--CoA ligase K01906 - 6.2.1.14 0.000000000000000000000000000000000000000000000002371 183.0
LYD3_k127_5384669_3 DsrE/DsrF-like family K06039 - - 0.0000000000000000000000000000000000000009414 149.0
LYD3_k127_5384669_4 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000000000000000000004871 116.0
LYD3_k127_5384669_5 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.0000000000000000000000001489 115.0
LYD3_k127_5384669_6 DNA-binding transcription factor activity K03655,K03892,K21903 - 3.6.4.12 0.0000000000000000003366 94.0
LYD3_k127_5384669_7 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000002414 75.0
LYD3_k127_5384669_8 DsrE/DsrF-like family K07235 - - 0.0002427 46.0
LYD3_k127_5387567_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 588.0
LYD3_k127_5387567_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 491.0
LYD3_k127_5387567_10 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000002892 103.0
LYD3_k127_5387567_11 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000001348 74.0
LYD3_k127_5387567_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005729 329.0
LYD3_k127_5387567_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 298.0
LYD3_k127_5387567_4 Domain of unknown function (DUF296) - - - 0.00000000000000000000000000000000000000000000000000000001104 201.0
LYD3_k127_5387567_5 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000003575 201.0
LYD3_k127_5387567_6 protein tyrosine phosphatase activity K01104,K19302 - 3.1.3.48,3.6.1.27 0.000000000000000000000000000000000000000000000000001113 190.0
LYD3_k127_5387567_7 glycogen (starch) synthase activity - - - 0.000000000000000000000000000000000000000000000000003213 196.0
LYD3_k127_5387567_8 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000006156 174.0
LYD3_k127_5387567_9 3-demethylubiquinone-9 3-O-methyltransferase activity K00568 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008289,GO:0008689,GO:0008757,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0042538,GO:0043167,GO:0043168,GO:0043431,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0061542,GO:0071704,GO:1901576,GO:1901611,GO:1901661,GO:1901663 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000001539 160.0
LYD3_k127_5394759_0 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008939,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 464.0
LYD3_k127_5394759_1 PFAM Phosphoglycerate mutase K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000000000005108 221.0
LYD3_k127_5394759_2 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000005863 205.0
LYD3_k127_5394759_3 Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate K02231 - 2.7.1.156,2.7.7.62 0.000000000000000000000000000000000000000000000000000001083 196.0
LYD3_k127_5394759_4 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000005088 156.0
LYD3_k127_5394759_5 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000000000000000000000000000000000006858 149.0
LYD3_k127_5394759_6 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000001933 83.0
LYD3_k127_5401252_0 Peptidylprolyl isomerase K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000017 202.0
LYD3_k127_5401252_1 fimbrial assembly K02461 - - 0.0000000003561 71.0
LYD3_k127_5401252_2 Type II secretion system (T2SS), protein M subtype b - - - 0.000006199 56.0
LYD3_k127_5401252_3 - - - - 0.0005457 50.0
LYD3_k127_5408062_0 PFAM Mannosyl oligosaccharide glucosidase - - - 3.448e-287 895.0
LYD3_k127_5408062_1 curli production assembly transport component CsgG - - - 0.00000000000000003944 81.0
LYD3_k127_5410746_0 GTP-binding protein TypA K06207 - - 2.372e-264 826.0
LYD3_k127_5410746_1 response regulator K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 413.0
LYD3_k127_5410746_2 Signal transduction histidine kinase, nitrogen specific K07708 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004721,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042578,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564 2.7.13.3 0.0000000000000000000000000000000000000000000000000246 192.0
LYD3_k127_5410746_3 Amidohydrolase family - - - 0.0000000000000000000000002984 111.0
LYD3_k127_5410746_4 Ribosomal protein S21 K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000003584 75.0
LYD3_k127_5411591_0 NeuB family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 501.0
LYD3_k127_5411591_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 476.0
LYD3_k127_5411591_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009175 432.0
LYD3_k127_5411591_3 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003811 433.0
LYD3_k127_5411591_4 Chorismate mutase type II K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 415.0
LYD3_k127_5413535_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 339.0
LYD3_k127_5413535_1 rRNA (uridine-N3-)-methyltransferase activity K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 293.0
LYD3_k127_5413535_2 Nitroreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 284.0
LYD3_k127_5413535_3 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000001092 218.0
LYD3_k127_5413535_4 PFAM PHP domain - - - 0.000000000000000000000000000000000000000000002318 171.0
LYD3_k127_5413535_5 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000009582 115.0
LYD3_k127_5418086_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1162.0
LYD3_k127_5418086_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 464.0
LYD3_k127_5418086_2 Nucleotidyl transferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 353.0
LYD3_k127_5418086_3 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007968 326.0
LYD3_k127_5418086_4 MazG nucleotide pyrophosphohydrolase domain K02428,K02499,K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.66,3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 295.0
LYD3_k127_5418086_5 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000002912 233.0
LYD3_k127_5418086_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000003903 174.0
LYD3_k127_5418086_7 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000000000006442 104.0
LYD3_k127_5429540_0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000001851 166.0
LYD3_k127_5429540_1 Aminotransferase class I and II K10206 - 2.6.1.83 0.000000000000000000000000000002939 122.0
LYD3_k127_5429540_2 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.00000002097 66.0
LYD3_k127_5435723_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007823 595.0
LYD3_k127_5435723_1 PFAM SPFH domain Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 529.0
LYD3_k127_5435723_2 Domain of unknown function (DUF4178) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 398.0
LYD3_k127_5435723_3 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 302.0
LYD3_k127_5435723_4 Rubrerythrin - GO:0003674,GO:0005488,GO:0005506,GO:0043167,GO:0043169,GO:0046872,GO:0046914 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001418 250.0
LYD3_k127_5435723_5 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000001281 236.0
LYD3_k127_5435723_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000007153 126.0
LYD3_k127_5436305_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 539.0
LYD3_k127_5436305_1 Uroporphyrinogen decarboxylase (URO-D) K14080 - 2.1.1.246 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004033 418.0
LYD3_k127_5436305_2 Tetrahydromethanopterin S-methyltransferase MtrH subunit K00584 - 2.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 373.0
LYD3_k127_5436305_3 Methionine synthase, cobalamin (vitamin B12)-binding module, cap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 319.0
LYD3_k127_5436305_4 TIGRFAM iron-sulfur cluster binding protein - - - 0.00000000000000000000000000000000000000000000009684 175.0
LYD3_k127_5436305_5 PFAM Carboxymuconolactone decarboxylase - - - 0.00002161 46.0
LYD3_k127_5442233_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.369e-194 613.0
LYD3_k127_5442233_1 PSP1 C-terminal conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001333 254.0
LYD3_k127_5442233_2 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000002569 218.0
LYD3_k127_5442233_3 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.0000000000000000000000000000000000000000000000000006652 192.0
LYD3_k127_5442233_4 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000021 99.0
LYD3_k127_5446646_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00123,K00336,K05299,K06441 - 1.12.7.2,1.17.1.10,1.17.1.9,1.6.5.3 1.637e-225 717.0
LYD3_k127_5446646_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 605.0
LYD3_k127_5446646_2 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain K00528,K16951 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004564 336.0
LYD3_k127_5446646_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007946 332.0
LYD3_k127_5446646_4 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000008089 215.0
LYD3_k127_5446646_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain - - - 0.00000000000000000000000000000000000000000000000000002044 194.0
LYD3_k127_5446646_6 COG0226 ABC-type phosphate transport system, periplasmic component K02040 - - 0.0000000000000000000000000000000000000000001143 170.0
LYD3_k127_5446646_7 diguanylate cyclase - - - 0.0000000000000000000001087 109.0
LYD3_k127_5446646_8 peptidyl-tyrosine sulfation - - - 0.0004021 47.0
LYD3_k127_5449413_0 Domains REC, sigma54 interaction, HTH8 K02481 - - 2.931e-206 650.0
LYD3_k127_5449413_1 epimerase dehydratase K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008773 570.0
LYD3_k127_5449413_2 Nitroreductase - - - 0.000000000000000000000000000000000000000000001405 171.0
LYD3_k127_5454423_0 sugar transferase K00996 - 2.7.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 391.0
LYD3_k127_5454423_1 transferase activity, transferring glycosyl groups K00745,K12988,K18704 - 2.4.1.166,2.7.8.14,2.7.8.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005408 310.0
LYD3_k127_5454423_2 Histidine biosynthesis protein K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001484 283.0
LYD3_k127_5454423_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000107,GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016763 - 0.00000000000000000000000000000000000000000000000000000000000000000000003785 243.0
LYD3_k127_5454423_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001028 256.0
LYD3_k127_5454423_5 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000000000000000000001137 230.0
LYD3_k127_5454423_6 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000008254 226.0
LYD3_k127_5454423_7 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000005023 207.0
LYD3_k127_5454423_8 Nodulation protein S (NodS) - - - 0.0001619 49.0
LYD3_k127_5482086_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 4.675e-197 627.0
LYD3_k127_5482086_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 555.0
LYD3_k127_5482086_10 Protein of unknown function (DUF1573) - - - 0.0000000000003281 78.0
LYD3_k127_5482086_11 Protein of unknown function (DUF2934) - - - 0.000001183 53.0
LYD3_k127_5482086_12 - - - - 0.0003688 44.0
LYD3_k127_5482086_2 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 496.0
LYD3_k127_5482086_3 molybdopterin oxidoreductase Fe4S4 region K05299 - 1.17.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 481.0
LYD3_k127_5482086_4 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding K00335,K18331,K22339 - 1.12.1.3,1.17.1.11,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000008293 259.0
LYD3_k127_5482086_5 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000003295 243.0
LYD3_k127_5482086_6 Mo-molybdopterin cofactor metabolic process K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000001391 235.0
LYD3_k127_5482086_7 Uncharacterized ACR, COG1993 K09137 - - 0.00000000000000000000000000000000000000000000000000000003561 208.0
LYD3_k127_5482086_8 Haloacid dehalogenase domain protein hydrolase - - - 0.0000000000000000000000000000000000000000000000000000001852 196.0
LYD3_k127_5482086_9 AMP binding - - - 0.00000000000000000000000000000000000000000001458 165.0
LYD3_k127_5492242_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 519.0
LYD3_k127_5492242_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 491.0
LYD3_k127_5492242_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 419.0
LYD3_k127_5492242_3 Cell cycle protein K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 396.0
LYD3_k127_5492242_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004859 368.0
LYD3_k127_5492242_5 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 365.0
LYD3_k127_5492242_6 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000007213 259.0
LYD3_k127_5499450_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 390.0
LYD3_k127_5499450_1 metal ion binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000006081 239.0
LYD3_k127_5499450_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000004305 138.0
LYD3_k127_5499450_3 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000724 85.0
LYD3_k127_5499450_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000002613 84.0
LYD3_k127_5511073_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 3.342e-262 825.0
LYD3_k127_5511073_1 DHH family K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 445.0
LYD3_k127_5511073_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000001317 229.0
LYD3_k127_5511073_3 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000000000002117 220.0
LYD3_k127_5511073_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000001428 189.0
LYD3_k127_5511073_5 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.00000000000000000000000000000000000000000007013 179.0
LYD3_k127_5521274_0 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004449 503.0
LYD3_k127_5521274_1 TIGRFAM cytochrome C family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 394.0
LYD3_k127_5521274_2 PFAM Tetratricopeptide TPR_1 repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 364.0
LYD3_k127_5521274_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K14986 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000008291 265.0
LYD3_k127_5521274_4 Response regulator receiver - - - 0.000008985 56.0
LYD3_k127_5521769_0 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 316.0
LYD3_k127_5521769_1 histidine kinase-, DNA gyrase B - - - 0.0001371 52.0
LYD3_k127_5527583_0 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004793 534.0
LYD3_k127_5527583_1 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 487.0
LYD3_k127_5527583_10 PFAM cytochrome c biogenesis protein, transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000008505 181.0
LYD3_k127_5527583_11 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.0000000000000000000000000000000000000000000005785 172.0
LYD3_k127_5527583_12 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000000000000003565 152.0
LYD3_k127_5527583_13 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000001105 99.0
LYD3_k127_5527583_14 cell redox homeostasis - - - 0.0000000000000000000006325 96.0
LYD3_k127_5527583_15 cell redox homeostasis K02199,K03671 - - 0.000000000000000000002604 98.0
LYD3_k127_5527583_16 thiosulfate sulfurtransferase activity - - - 0.000000000000000000004848 99.0
LYD3_k127_5527583_17 - - - - 0.0000000000006092 69.0
LYD3_k127_5527583_18 Carboxymuconolactone decarboxylase family - - - 0.000000000208 63.0
LYD3_k127_5527583_19 PFAM cytochrome c biogenesis protein, transmembrane region K06196 - - 0.00000001553 57.0
LYD3_k127_5527583_2 4Fe-4S dicluster domain K16950 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 336.0
LYD3_k127_5527583_3 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 293.0
LYD3_k127_5527583_4 FmdE, Molybdenum formylmethanofuran dehydrogenase operon K11261 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 288.0
LYD3_k127_5527583_5 NADH ubiquinone oxidoreductase, 20 Kd subunit K18007 - 1.12.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003502 280.0
LYD3_k127_5527583_6 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001143 268.0
LYD3_k127_5527583_7 TIGRFAM phosphodiesterase, MJ0936 - - - 0.00000000000000000000000000000000000000000000000000000000000003629 223.0
LYD3_k127_5527583_8 - - - - 0.00000000000000000000000000000000000000000000000000003761 193.0
LYD3_k127_5527583_9 Uncharacterised protein family UPF0066 - - - 0.00000000000000000000000000000000000000000000000000004821 190.0
LYD3_k127_5538959_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 561.0
LYD3_k127_5538959_1 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003347 245.0
LYD3_k127_5538959_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000597 237.0
LYD3_k127_5538959_3 PFAM MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000000001229 213.0
LYD3_k127_5538959_4 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000001592 204.0
LYD3_k127_5538959_5 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.000000000000000000000000000000000000001318 151.0
LYD3_k127_5538959_6 - - - - 0.0000000000000000000000000000000004247 134.0
LYD3_k127_5538959_7 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids K03733,K04763 - - 0.00000000000000000000000000001785 130.0
LYD3_k127_5538959_8 Phage integrase SAM-like domain - - - 0.000000000000000000001038 107.0
LYD3_k127_5541007_0 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 5.412e-243 773.0
LYD3_k127_5541007_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003666 568.0
LYD3_k127_5541007_2 Transcriptional regulator, MerR family - - - 0.0000000000000000000000000000000001958 137.0
LYD3_k127_5541007_3 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000001081 72.0
LYD3_k127_5558008_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 7.43e-321 996.0
LYD3_k127_5558008_1 PFAM Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00335 - 1.6.5.3 5.423e-213 672.0
LYD3_k127_5558008_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 296.0
LYD3_k127_5558008_3 SurA N-terminal domain K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000003456 237.0
LYD3_k127_5558008_4 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000008656 187.0
LYD3_k127_5558008_5 Domain of unknown function (DUF4416) - - - 0.000000000000000000000000000000000000002548 156.0
LYD3_k127_5558008_6 Thioredoxin-like - - - 0.0000000000000000000000000000000000402 139.0
LYD3_k127_5585887_0 pathogenesis K13669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004059 624.0
LYD3_k127_5585887_1 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003244 538.0
LYD3_k127_5585887_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 460.0
LYD3_k127_5585887_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004825 426.0
LYD3_k127_5585887_4 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 347.0
LYD3_k127_5585887_5 Type II and III secretion system protein K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000002402 236.0
LYD3_k127_5585887_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.0000000000000000000000000000000000000000000000001646 181.0
LYD3_k127_5585887_7 CAAX protease self-immunity K07052 - - 0.0000000001016 70.0
LYD3_k127_5585887_8 Concanavalin A-like lectin/glucanases superfamily - - - 0.000001228 61.0
LYD3_k127_5637531_0 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 402.0
LYD3_k127_5637531_1 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 347.0
LYD3_k127_5637531_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002738 278.0
LYD3_k127_5637531_3 Evidence 5 No homology to any previously reported sequences K07156,K07245,K14166 - - 0.000000000000000000000000000000000000000006553 168.0
LYD3_k127_5637531_4 response to copper ion K07156,K14166 - - 0.000000000000000000000000000000007845 131.0
LYD3_k127_5637531_5 NosL - - - 0.0000000000000000000000000000003813 140.0
LYD3_k127_5637531_6 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000000000001257 87.0
LYD3_k127_5668816_0 Type II secretion system (T2SS), protein K K02460 - - 0.0000000000000000000000000000000000361 143.0
LYD3_k127_5668816_1 Type II secretion system (T2SS), protein F K02455 - - 0.00000000000000000000003284 101.0
LYD3_k127_5668816_2 General secretion pathway protein K02457 - - 0.000000008829 64.0
LYD3_k127_5668816_3 Prokaryotic N-terminal methylation motif K02458 - - 0.0000008686 56.0
LYD3_k127_5668816_4 Prokaryotic N-terminal methylation motif K02456,K02457,K02458,K02459,K02655,K10926 - - 0.0001581 52.0
LYD3_k127_5694314_0 PFAM Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009206 480.0
LYD3_k127_5694314_1 Glycoprotease family K01409,K14742 GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000113 175.0
LYD3_k127_5694314_2 response regulator - - - 0.000000000000000000000000000000001106 142.0
LYD3_k127_5694314_3 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000000000000000000000000008066 128.0
LYD3_k127_5694314_4 Regulatory protein, FmdB family - - - 0.000000003321 59.0
LYD3_k127_5754523_0 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 395.0
LYD3_k127_5754523_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000011 272.0
LYD3_k127_5754523_2 DNA-binding transcription factor activity K03655,K03892,K21903 - 3.6.4.12 0.0000000000000000009633 89.0
LYD3_k127_5754523_3 MMPL family K07003 - - 0.00000000000001773 77.0
LYD3_k127_5758490_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009453 419.0
LYD3_k127_5758490_1 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 408.0
LYD3_k127_5758490_2 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008916 350.0
LYD3_k127_5759017_0 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003313 277.0
LYD3_k127_5759017_1 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000002967 235.0
LYD3_k127_5759017_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000002561 197.0
LYD3_k127_5759017_3 PFAM iron dependent repressor K03709 - - 0.000000000000000000000000000000000000000000000000063 185.0
LYD3_k127_5759017_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000004057 148.0
LYD3_k127_5759017_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000551 125.0
LYD3_k127_5759017_6 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000001356 59.0
LYD3_k127_5759017_7 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000001623 52.0
LYD3_k127_5762295_0 Elongation factor G, domain IV K02355 - - 3.907e-297 925.0
LYD3_k127_5762295_1 Glucose-1-phosphate thymidylyltransferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 433.0
LYD3_k127_5762295_2 Male sterility protein K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 293.0
LYD3_k127_5762295_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000001632 192.0
LYD3_k127_5770466_0 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005603 529.0
LYD3_k127_5770466_1 SCO1 SenC K07152 - - 0.0000000000000000000000000000000000000000000000000000000001542 209.0
LYD3_k127_5770466_2 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000004071 173.0
LYD3_k127_5782324_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007854 333.0
LYD3_k127_5807114_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 1.563e-272 850.0
LYD3_k127_5807114_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 390.0
LYD3_k127_5820850_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002327 269.0
LYD3_k127_5820850_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000001277 207.0
LYD3_k127_5820850_2 Protein of unknown function (DUF1456) - - - 0.0000000000000000000000000000002268 123.0
LYD3_k127_5820850_3 Spermidine synthase K00797 - 2.5.1.16 0.000001771 49.0
LYD3_k127_5837507_0 Starch synthase catalytic domain K00703 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 409.0
LYD3_k127_5837507_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 412.0
LYD3_k127_5837507_2 SMART AAA ATPase K02450 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 389.0
LYD3_k127_5837507_3 Lipid A core-O-antigen ligase-like enyme K18814 - - 0.000000000000000000000000000000000000000000000000000000000000000007503 239.0
LYD3_k127_5837507_4 - - - - 0.000000000000000000000000000000000000000000000000000000004718 204.0
LYD3_k127_5837507_5 Bacterial regulatory proteins, crp family - - - 0.00000000000000000000000000000000000000000000000001791 188.0
LYD3_k127_5837507_6 phosphatase activity K05967 - - 0.000000000000000000000000000000000000000006324 160.0
LYD3_k127_5837507_7 Type II secretion system protein B K02451 - - 0.000000000000005159 83.0
LYD3_k127_5837507_8 Protein of unknown function (DUF2934) - - - 0.00005518 49.0
LYD3_k127_5890008_0 PFAM binding-protein-dependent transport systems inner membrane component K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 428.0
LYD3_k127_5890008_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002914 428.0
LYD3_k127_5890008_2 Belongs to the PstS family K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 389.0
LYD3_k127_5890008_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000002582 251.0
LYD3_k127_5890761_0 Histidine kinase - - - 0.0000000000000000000000001947 122.0
LYD3_k127_5894833_0 response to heat K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 387.0
LYD3_k127_5894833_1 Uncharacterized protein family (UPF0051) K07033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007768 346.0
LYD3_k127_5894833_2 PFAM Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000008817 238.0
LYD3_k127_5894833_3 PFAM ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000007734 169.0
LYD3_k127_5894833_4 COG1595 DNA-directed RNA polymerase specialized sigma K03088 - - 0.0000000000000000000000000000000008614 137.0
LYD3_k127_5894833_5 amine dehydrogenase activity K15864,K19345 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.7.2.1,1.7.99.1 0.00000000000000000000000000005749 130.0
LYD3_k127_5894833_6 Heavy-metal resistance - - - 0.000000000000000000000000004076 116.0
LYD3_k127_5894833_7 Domain of unknown function (DUF4349) - - - 0.0000008284 57.0
LYD3_k127_5912785_0 Protein of unknown function (DUF1722) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 444.0
LYD3_k127_5912785_1 PFAM NAD-dependent epimerase dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005665 305.0
LYD3_k127_5912785_2 aminopeptidase N - - - 0.00000000000000000000000000000000000000000000000000000001706 210.0
LYD3_k127_5912785_4 Membrane - - - 0.000000000000000000000005772 109.0
LYD3_k127_5912785_5 translation initiation factor activity K03646 - - 0.00000000003 73.0
LYD3_k127_5918574_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 4.563e-197 643.0
LYD3_k127_5918574_1 PFAM response regulator receiver - - - 0.000000000006691 65.0
LYD3_k127_5929662_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 3.183e-215 677.0
LYD3_k127_5929662_1 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003894 526.0
LYD3_k127_5943574_0 helix_turn_helix, Lux Regulon K02282,K07689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 296.0
LYD3_k127_5943574_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000001762 263.0
LYD3_k127_5943574_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001286 270.0
LYD3_k127_5943574_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000218 194.0
LYD3_k127_5943574_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000008286 133.0
LYD3_k127_5943574_5 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.000000000000000000000000001525 117.0
LYD3_k127_5956902_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006526 272.0
LYD3_k127_5962684_0 Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007251 510.0
LYD3_k127_5962684_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 367.0
LYD3_k127_5962684_2 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007907 346.0
LYD3_k127_5962684_3 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000639 196.0
LYD3_k127_5962684_4 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000001723 149.0
LYD3_k127_5962684_5 domain, Protein K00703,K07082 - 2.4.1.21 0.0000000000000002133 84.0
LYD3_k127_5962684_6 cheY-homologous receiver domain - - - 0.0001514 48.0
LYD3_k127_603224_0 S-methyl-5-thioadenosine phosphorylase activity K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004645,GO:0004731,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0010033,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017061,GO:0017144,GO:0019221,GO:0019509,GO:0019752,GO:0023052,GO:0032259,GO:0034097,GO:0034641,GO:0035722,GO:0042221,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070671,GO:0070887,GO:0071265,GO:0071267,GO:0071310,GO:0071345,GO:0071349,GO:0071704,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 329.0
LYD3_k127_603224_1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 297.0
LYD3_k127_603224_2 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.00000000000000000000000953 101.0
LYD3_k127_6032306_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004919 348.0
LYD3_k127_6032306_1 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001311 241.0
LYD3_k127_6032306_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000007538 192.0
LYD3_k127_6032306_3 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.00000000000000000000000000008013 121.0
LYD3_k127_6032306_4 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.000000000000000000000000001083 114.0
LYD3_k127_6039509_0 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 343.0
LYD3_k127_6039509_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 310.0
LYD3_k127_6039509_2 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 304.0
LYD3_k127_6039509_3 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000002602 223.0
LYD3_k127_6039509_4 PFAM CBS domain - - - 0.000000000000000000000000000001319 129.0
LYD3_k127_6039509_5 Putative regulatory protein - - - 0.00000000000000000000004124 101.0
LYD3_k127_6039509_6 diguanylate cyclase - - - 0.000000000000000005583 89.0
LYD3_k127_6042562_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 1.715e-199 627.0
LYD3_k127_6042562_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005515 422.0
LYD3_k127_6042562_2 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 406.0
LYD3_k127_6042562_3 HlyD membrane-fusion protein of T1SS K03543 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 380.0
LYD3_k127_6042562_4 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005171 311.0
LYD3_k127_6042562_5 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K01883,K02533,K08281,K15396 - 2.1.1.200,3.5.1.19,6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002123 278.0
LYD3_k127_6042562_6 Sugar (and other) transporter K03446 - - 0.000000000000000000000000000000000000000000000000005418 183.0
LYD3_k127_6045132_0 Pyridoxal-phosphate dependent enzyme K06001 - 4.2.1.20 4.082e-225 704.0
LYD3_k127_6045132_1 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009964 387.0
LYD3_k127_6045132_10 PFAM Phosphate-selective porin O and P - - - 0.00000000000000000000000000000006909 126.0
LYD3_k127_6045132_11 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K13531 - 2.1.1.63 0.00000000000000000000000000000007349 131.0
LYD3_k127_6045132_12 - - - - 0.0000000000000000000000000004854 119.0
LYD3_k127_6045132_13 Protein of unknown function DUF134 - - - 0.00000000000000000000000003902 110.0
LYD3_k127_6045132_14 Antioxidant, AhpC TSA family - - - 0.0000000000001226 74.0
LYD3_k127_6045132_17 Thioredoxin-like - - - 0.00002133 50.0
LYD3_k127_6045132_2 Phospholipase, patatin family K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005009 279.0
LYD3_k127_6045132_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000316 246.0
LYD3_k127_6045132_4 ATP cone domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002033 244.0
LYD3_k127_6045132_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000001583 198.0
LYD3_k127_6045132_6 Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000000000000001205 153.0
LYD3_k127_6045132_7 Protein of unknown function (DUF3617) - - - 0.00000000000000000000000000000000003786 138.0
LYD3_k127_6045132_8 Arginine-tRNA-protein transferase, N terminus K21420 - 2.3.2.29 0.0000000000000000000000000000000006421 139.0
LYD3_k127_6045132_9 denitrification pathway - - - 0.0000000000000000000000000000000191 135.0
LYD3_k127_6057008_0 PFAM Na dependent nucleoside transporter K03317 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 501.0
LYD3_k127_6057008_1 phosphosulfolactate synthase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 423.0
LYD3_k127_6057008_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000001036 101.0
LYD3_k127_6059710_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 2.719e-198 626.0
LYD3_k127_6059710_1 oxidoreductase activity K00316 - 1.5.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 527.0
LYD3_k127_6059710_2 Creatinase/Prolidase N-terminal domain K01262,K01271 - 3.4.11.9,3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006926 483.0
LYD3_k127_6059710_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 434.0
LYD3_k127_6059710_4 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 430.0
LYD3_k127_6059710_5 Spermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001307 278.0
LYD3_k127_6059710_6 - - - - 0.00000000000000000001738 97.0
LYD3_k127_6059710_7 - - - - 0.0000000000002277 73.0
LYD3_k127_6059710_8 Transposase and inactivated derivatives - - - 0.000000000003827 70.0
LYD3_k127_6064257_0 Protein of unknown function, DUF255 K06888 - - 3.983e-251 790.0
LYD3_k127_6064257_1 Domain in cystathionine beta-synthase and other proteins. K07182 - - 1.918e-196 631.0
LYD3_k127_6064257_10 methyltransferase activity - - - 0.00000000000000000000000000000000000000005113 158.0
LYD3_k127_6064257_13 Response regulator receiver - - - 0.000000000000000000000000004455 115.0
LYD3_k127_6064257_14 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000135 73.0
LYD3_k127_6064257_15 - - - - 0.00000000000001646 75.0
LYD3_k127_6064257_16 Universal stress protein family K07090 - - 0.00000000000002684 73.0
LYD3_k127_6064257_2 metal ion transmembrane transporter activity K03322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000796 517.0
LYD3_k127_6064257_3 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 491.0
LYD3_k127_6064257_4 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 445.0
LYD3_k127_6064257_5 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002536 287.0
LYD3_k127_6064257_6 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006602 280.0
LYD3_k127_6064257_7 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000119 239.0
LYD3_k127_6064257_8 Domain of unknown function (DUF4337) - - - 0.000000000000000000000000000000000000000000000000000000000000002744 222.0
LYD3_k127_6064257_9 Protein of unknown function (DUF1255) K09913 - 2.4.2.1,2.4.2.2 0.00000000000000000000000000000000000000000000003795 171.0
LYD3_k127_6073334_0 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007339 343.0
LYD3_k127_6073334_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 312.0
LYD3_k127_6073334_2 phosphoesterase RecJ domain protein K06881 GO:0008150,GO:0040007 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000002389 258.0
LYD3_k127_6073334_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000001423 235.0
LYD3_k127_6073334_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000001375 106.0
LYD3_k127_6073334_5 Pilus assembly protein, PilO K02664 - - 0.0000000000005588 74.0
LYD3_k127_6073334_6 PFAM Fimbrial assembly K02663 - - 0.000000001305 66.0
LYD3_k127_6073440_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K01006 - 2.7.9.1 0.0 1184.0
LYD3_k127_6073440_1 Family 5 K02035,K15580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 357.0
LYD3_k127_6073440_2 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001919 277.0
LYD3_k127_6073440_3 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001328 247.0
LYD3_k127_6073440_4 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000001956 149.0
LYD3_k127_6073440_5 Polymer-forming cytoskeletal - - - 0.000000000000000000000000007197 113.0
LYD3_k127_6073440_6 COG2200 FOG EAL domain K20963 - 3.1.4.52 0.000000003142 65.0
LYD3_k127_6079901_0 Leucyl-tRNA synthetase, Domain 2 K01869 - 6.1.1.4 0.0 1119.0
LYD3_k127_6079901_1 Haem-binding uptake, Tiki superfamily, ChaN - - - 1.027e-205 675.0
LYD3_k127_6079901_10 DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000002937 80.0
LYD3_k127_6079901_11 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000003584 64.0
LYD3_k127_6079901_2 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 582.0
LYD3_k127_6079901_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549 443.0
LYD3_k127_6079901_4 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000007599 221.0
LYD3_k127_6079901_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.00000000000000000000000000000000000000000000000000000001169 204.0
LYD3_k127_6079901_6 Adenylate kinase - - - 0.00000000000000000000000000000000000000000000000006826 185.0
LYD3_k127_6079901_7 GAF domain - - - 0.000000000000000000000000000000000000000000001107 180.0
LYD3_k127_6079901_8 peptidyl-lysine modification to peptidyl-hypusine - - - 0.00000000000000000001124 94.0
LYD3_k127_6086028_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 0.0 1067.0
LYD3_k127_6086028_1 2-methylcitrate dehydratase K01720 - 4.2.1.79 5.409e-250 779.0
LYD3_k127_6086028_2 also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity K01659 - 2.3.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 572.0
LYD3_k127_6086028_3 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K01841,K03417 - 4.1.3.30,5.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 454.0
LYD3_k127_6086409_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 314.0
LYD3_k127_6086409_1 Nitrogen fixation master sensor histidine kinase, PAS domain-containing K02668,K07708,K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000002144 183.0
LYD3_k127_6086409_2 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000396 157.0
LYD3_k127_6086409_3 PBS lyase HEAT domain protein repeat-containing protein - - - 0.00000000000000008024 93.0
LYD3_k127_6086409_4 endonuclease containing a URI domain K07461 - - 0.000000000039 66.0
LYD3_k127_6086875_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 1.208e-217 684.0
LYD3_k127_6086875_1 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000000000001829 218.0
LYD3_k127_6086875_2 - - - - 0.000003728 54.0
LYD3_k127_6092401_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.53e-322 995.0
LYD3_k127_6098246_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007235 595.0
LYD3_k127_6098246_1 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000005125 196.0
LYD3_k127_6098246_2 Starch synthase catalytic domain K00703 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000000000000000000000000000000000003131 155.0
LYD3_k127_6099356_0 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 345.0
LYD3_k127_6099356_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 317.0
LYD3_k127_6099356_2 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001554 289.0
LYD3_k127_6099356_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000004882 242.0
LYD3_k127_6099356_4 Biotin-lipoyl like K02005 - - 0.00000000000000000000000001907 121.0
LYD3_k127_6099356_5 Alpha-acetolactate decarboxylase K01575 - 4.1.1.5 0.0000000000000000000000004003 114.0
LYD3_k127_6099356_6 PKD domain K01179,K08651 - 3.2.1.4,3.4.21.66 0.000000000000000000005562 109.0
LYD3_k127_6099356_7 lytic transglycosylase K08309 - - 0.0000002414 61.0
LYD3_k127_6100457_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 441.0
LYD3_k127_6100457_1 response to heat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 411.0
LYD3_k127_6100457_2 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000662 391.0
LYD3_k127_6100457_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 338.0
LYD3_k127_6100457_4 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 327.0
LYD3_k127_6100457_5 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000002039 218.0
LYD3_k127_6100457_6 isopentenyl-diphosphate delta-isomerase activity K00949,K01823 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 2.7.6.2,5.3.3.2 0.000000000000000000000000000000000000000000000000003086 190.0
LYD3_k127_6100457_7 - - - - 0.000000000000000000004668 96.0
LYD3_k127_6106320_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 317.0
LYD3_k127_6106320_1 Acetyltransferase (GNAT) domain K00663 - 2.3.1.82 0.00003376 53.0
LYD3_k127_6123630_0 lipopolysaccharide transport K22110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008714 325.0
LYD3_k127_6123630_1 histidine kinase, HAMP K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000004205 186.0
LYD3_k127_6123630_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000002195 120.0
LYD3_k127_6132676_0 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 548.0
LYD3_k127_6132676_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005809 413.0
LYD3_k127_6132676_10 Predicted permease YjgP/YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000005393 214.0
LYD3_k127_6132676_11 C4-type zinc ribbon domain K07164 - - 0.000000000000000000000000000000000000000001521 165.0
LYD3_k127_6132676_13 - - - - 0.0001385 46.0
LYD3_k127_6132676_14 - - - - 0.000359 49.0
LYD3_k127_6132676_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 400.0
LYD3_k127_6132676_3 Transcriptional regulator K11921,K19338 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 379.0
LYD3_k127_6132676_4 Phosphomethylpyrimidine kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 359.0
LYD3_k127_6132676_5 Thiamine biosynthesis protein (ThiI) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 310.0
LYD3_k127_6132676_7 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000008349 255.0
LYD3_k127_6132676_8 Predicted permease YjgP/YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000003385 240.0
LYD3_k127_6132676_9 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000002711 216.0
LYD3_k127_6142951_0 PFAM Cytochrome c oxidase, subunit I K04561 - 1.7.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 609.0
LYD3_k127_6142951_1 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006469 590.0
LYD3_k127_6142951_2 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000001053 151.0
LYD3_k127_6142951_3 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.00000000009759 68.0
LYD3_k127_6142951_4 Cytochrome c K02305 - - 0.0006171 45.0
LYD3_k127_6151218_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006356 499.0
LYD3_k127_6151218_1 AAA ATPase, central domain protein K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 451.0
LYD3_k127_6151218_2 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000001163 77.0
LYD3_k127_6163241_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 6.486e-209 667.0
LYD3_k127_6163241_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030312,GO:0030554,GO:0031333,GO:0031597,GO:0032271,GO:0032272,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043254,GO:0043335,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051301,GO:0051704,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 596.0
LYD3_k127_6163241_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 325.0
LYD3_k127_6163241_3 Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005755 292.0
LYD3_k127_6163241_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001807 294.0
LYD3_k127_6163241_5 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000000000000495 211.0
LYD3_k127_6163241_6 Archaea-specific editing domain of threonyl-tRNA synthetase - - - 0.0000000000000000000000000000000000000000000009241 171.0
LYD3_k127_6163241_7 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000001014 89.0
LYD3_k127_6163241_8 Belongs to the GTP cyclohydrolase I type 2 NIF3 family K22391 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0042802,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0050896 3.5.4.16 0.00000000009036 62.0
LYD3_k127_6163241_9 Protein of unknown function (DUF721) - - - 0.0007884 49.0
LYD3_k127_6173870_0 PFAM FAD linked oxidase domain protein K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000915 497.0
LYD3_k127_6173870_1 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000001116 119.0
LYD3_k127_6177166_0 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 546.0
LYD3_k127_6177166_1 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000009006 181.0
LYD3_k127_6177166_2 - - - - 0.000000000000000000000000000000000001706 147.0
LYD3_k127_6182722_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 569.0
LYD3_k127_6182722_1 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006584 283.0
LYD3_k127_6182722_2 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000001143 160.0
LYD3_k127_6182722_3 DsrE/DsrF/DrsH-like family - - - 0.000009607 47.0
LYD3_k127_6184130_0 L-glutamate biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008851 590.0
LYD3_k127_6184130_1 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 496.0
LYD3_k127_6184130_10 Phage integrase, N-terminal SAM-like domain - - - 0.000000000000009124 75.0
LYD3_k127_6184130_11 - - - - 0.000000003272 62.0
LYD3_k127_6184130_12 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000004284 68.0
LYD3_k127_6184130_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 477.0
LYD3_k127_6184130_3 geranylgeranyl reductase activity K14266 - 1.14.19.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 391.0
LYD3_k127_6184130_4 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006504 385.0
LYD3_k127_6184130_5 Belongs to the glutamate synthase family K00265 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000003452 160.0
LYD3_k127_6184130_6 cyclic nucleotide binding K00384,K01420 - 1.8.1.9 0.00000000000000000000000000000004846 127.0
LYD3_k127_6184130_7 Belongs to the HesB IscA family K15724 - - 0.0000000000000000000000000000001798 126.0
LYD3_k127_6184130_8 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000002032 111.0
LYD3_k127_6184130_9 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.0000000000000000000388 101.0
LYD3_k127_619634_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002482 262.0
LYD3_k127_619634_1 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K00564,K15460 - 2.1.1.172,2.1.1.223 0.000000000000000000000000000000000000000000000000000000000000009231 222.0
LYD3_k127_619634_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000008807 192.0
LYD3_k127_619634_3 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.00000000000000000000000000000000000000000003786 166.0
LYD3_k127_619634_4 Tetratricopeptide repeat K07452 - - 0.000000004842 66.0
LYD3_k127_619634_5 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.00006296 55.0
LYD3_k127_6204201_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.208e-275 861.0
LYD3_k127_6204201_1 isochorismatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 432.0
LYD3_k127_6204201_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000001028 190.0
LYD3_k127_6204201_3 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000001945 127.0
LYD3_k127_6228874_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 6.952e-262 819.0
LYD3_k127_6228874_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 3.651e-203 637.0
LYD3_k127_6228874_10 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000002163 207.0
LYD3_k127_6228874_11 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000002617 207.0
LYD3_k127_6228874_12 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000005372 166.0
LYD3_k127_6228874_13 B12 binding domain K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000005384 179.0
LYD3_k127_6228874_14 COG3209 Rhs family protein - - - 0.0000000000001839 84.0
LYD3_k127_6228874_15 - K06039,K07092 - - 0.000002079 55.0
LYD3_k127_6228874_16 Sigma-54 interaction domain - - - 0.00001207 49.0
LYD3_k127_6228874_2 fatty acid beta-oxidation using acyl-CoA dehydrogenase K03522,K22432 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0019395,GO:0019752,GO:0022900,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575 1.3.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 495.0
LYD3_k127_6228874_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 426.0
LYD3_k127_6228874_4 Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 414.0
LYD3_k127_6228874_5 DeoC/LacD family aldolase K08321 - 2.3.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 355.0
LYD3_k127_6228874_6 Peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 343.0
LYD3_k127_6228874_7 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 329.0
LYD3_k127_6228874_8 PFAM Electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 313.0
LYD3_k127_6228874_9 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000002603 229.0
LYD3_k127_6234006_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003041 397.0
LYD3_k127_6234006_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 391.0
LYD3_k127_6234006_2 membrane K09133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 349.0
LYD3_k127_6234006_3 ATPase activity K02010,K02049,K02068,K02071,K06857,K10112 - 3.6.3.30,3.6.3.55 0.00000000000000000000000000000000000000001514 156.0
LYD3_k127_624408_0 ABC1 family K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002657 289.0
LYD3_k127_624408_1 GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002988 243.0
LYD3_k127_624408_2 elongation factor Tu domain 2 protein K02355 - - 0.000000000000000000000000000000000000000000000000000003378 193.0
LYD3_k127_624408_3 Response regulator receiver - - - 0.0000000000000000000000000000000000000000009925 161.0
LYD3_k127_624408_5 Positive regulator of sigma(E), RseC MucC K03803 - - 0.000008923 53.0
LYD3_k127_6250791_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 515.0
LYD3_k127_6250791_1 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000004601 81.0
LYD3_k127_6250791_2 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000004778 62.0
LYD3_k127_6259159_0 Two component regulator propeller K00936 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000003931 247.0
LYD3_k127_6259159_1 HELICc2 K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000003025 217.0
LYD3_k127_6259159_2 Response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000002478 201.0
LYD3_k127_6259159_3 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000001184 195.0
LYD3_k127_6279607_0 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 443.0
LYD3_k127_6279607_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000004451 220.0
LYD3_k127_6303662_0 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 357.0
LYD3_k127_6303662_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 343.0
LYD3_k127_6303662_2 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 327.0
LYD3_k127_6303662_3 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 298.0
LYD3_k127_6303662_4 MlaD protein K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000002757 248.0
LYD3_k127_6303662_5 cytochrome complex assembly - - - 0.000000000000000000000000000000000000000000000000000000000000000000004155 241.0
LYD3_k127_6303662_6 cytochrome c biogenesis protein - - - 0.00000000000000000000000000000000000000000000000008 186.0
LYD3_k127_6303662_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000001153 170.0
LYD3_k127_6304173_0 FAD binding domain K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 625.0
LYD3_k127_6304173_1 two component, sigma54 specific, transcriptional regulator, Fis family K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 475.0
LYD3_k127_6304173_2 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 378.0
LYD3_k127_6304173_3 His Kinase A (phosphoacceptor) domain K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007572 336.0
LYD3_k127_6304173_4 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000001706 194.0
LYD3_k127_6304173_5 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000004216 194.0
LYD3_k127_6304173_6 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000007188 60.0
LYD3_k127_6315477_0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 492.0
LYD3_k127_6315477_1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity K11779,K11780,K11781,K11784,K18285 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016740,GO:0016765,GO:0044237,GO:0044249,GO:0044689,GO:0051186,GO:0051188 1.21.98.1,2.5.1.120,2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008744 469.0
LYD3_k127_6315477_10 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000001714 104.0
LYD3_k127_6315477_11 Protein of unknown function (DUF507) - - - 0.000000000000000000000003263 104.0
LYD3_k127_6315477_12 4Fe-4S binding domain - - - 0.000000000000000005991 84.0
LYD3_k127_6315477_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 356.0
LYD3_k127_6315477_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000009538 225.0
LYD3_k127_6315477_4 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000000000000005136 160.0
LYD3_k127_6315477_5 SMART HNH nuclease K07451 - - 0.000000000000000000000000000000000000003857 150.0
LYD3_k127_6315477_6 Pyridoxamine 5'-phosphate oxidase like - - - 0.0000000000000000000000000000000000005347 144.0
LYD3_k127_6315477_7 Protein of unknown function (DUF507) - - - 0.0000000000000000000000000002262 117.0
LYD3_k127_6315477_8 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000115 115.0
LYD3_k127_6315477_9 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000263 112.0
LYD3_k127_6384190_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K13924 - 2.1.1.80,3.1.1.61 2.191e-273 882.0
LYD3_k127_6384190_1 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000003008 203.0
LYD3_k127_6384975_1 chlorophyll binding K03286,K07275 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000000000000000000003573 118.0
LYD3_k127_6384975_2 - - - - 0.00000000000000007842 80.0
LYD3_k127_6384975_3 Antibiotic biosynthesis monooxygenase - - - 0.000000000000001006 81.0
LYD3_k127_6388743_0 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 6.323e-199 625.0
LYD3_k127_6388743_1 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006763 258.0
LYD3_k127_6388743_2 PFAM lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000008072 241.0
LYD3_k127_6388743_3 radical SAM K06871 - - 0.0000000000000000000000000000000000000000008774 169.0
LYD3_k127_6388743_4 Belongs to the peptidase S16 family K01338,K04076 - 3.4.21.53 0.00000000000002978 73.0
LYD3_k127_6423833_0 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006853 548.0
LYD3_k127_6423833_1 PFAM HPP family K07168 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000315 263.0
LYD3_k127_6423833_2 PFAM CBS domain - - - 0.000000000000000000000000000000000000000000000000000005572 196.0
LYD3_k127_6426113_0 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 355.0
LYD3_k127_6426113_1 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000003025 222.0
LYD3_k127_6426113_2 Radical SAM K22227 - - 0.0000000000000000000003041 109.0
LYD3_k127_6428700_0 AMP-binding enzyme C-terminal domain K05939 - 2.3.1.40,6.2.1.20 1.451e-209 662.0
LYD3_k127_6428700_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 603.0
LYD3_k127_6428700_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 407.0
LYD3_k127_6428700_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 355.0
LYD3_k127_6428700_4 helix_turn_helix, cAMP Regulatory protein - - - 0.00000000000000000000000000000001153 131.0
LYD3_k127_6446804_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009516 276.0
LYD3_k127_6446804_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000002087 233.0
LYD3_k127_6446804_2 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( ) K02823 - - 0.0000000000000000000000000000000000000000000000002459 185.0
LYD3_k127_6446804_3 NmrA-like family - - - 0.000001995 50.0
LYD3_k127_6465490_0 tail specific protease K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 479.0
LYD3_k127_6465490_1 very-long-chain-acyl-CoA dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003209 271.0
LYD3_k127_6465490_2 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000001108 239.0
LYD3_k127_6465490_3 Peptidase family M23 K21471 - - 0.00000000000000000000000000000000000000000000000000000000000945 224.0
LYD3_k127_6465490_4 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000001136 197.0
LYD3_k127_6465490_5 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 - - 0.000000000000000000000000000000000001723 149.0
LYD3_k127_6465490_6 Transcriptional regulator, arsR family - - - 0.0000000000000000000000004427 108.0
LYD3_k127_6465490_7 - - - - 0.000000000000000000000004545 109.0
LYD3_k127_6465490_8 PFAM PfkB domain protein K00856 - 2.7.1.20 0.000000003351 58.0
LYD3_k127_6539714_0 PFAM MscS Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 382.0
LYD3_k127_6539714_1 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 348.0
LYD3_k127_6539714_2 - - - - 0.000000000000000000000000000000000000000000000000209 182.0
LYD3_k127_6539714_3 Glycine-zipper domain - - - 0.000000000000000000000000000000000000000004081 160.0
LYD3_k127_6539714_4 - - - - 0.00000000000000001447 89.0
LYD3_k127_6539714_5 electron transfer activity K05337,K17247 - - 0.00000001368 58.0
LYD3_k127_6539714_6 PFAM NAD-dependent epimerase dehydratase - - - 0.0001409 46.0
LYD3_k127_6539714_7 Transposase IS200 like - - - 0.0002177 44.0
LYD3_k127_6549203_0 Ecdysteroid kinase K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000009215 276.0
LYD3_k127_6549203_1 Uncharacterised protein family (UPF0158) - - - 0.00000001109 64.0
LYD3_k127_6557547_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.863e-315 990.0
LYD3_k127_6557547_1 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 1.82e-217 687.0
LYD3_k127_6557547_2 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 542.0
LYD3_k127_6557547_3 PFAM Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 415.0
LYD3_k127_6557547_4 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006057 391.0
LYD3_k127_6557547_5 Thioredoxin K03671 - - 0.000000000000005465 81.0
LYD3_k127_6557547_6 Mycolic acid cyclopropane synthetase - - - 0.000004213 55.0
LYD3_k127_6573704_0 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001661 259.0
LYD3_k127_6573704_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.00000000000000000000000000000000000000000000000000000001185 199.0
LYD3_k127_6573704_2 Ribosomal protein L33 K02913 - - 0.0000000000002325 72.0
LYD3_k127_6573704_3 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000005997 70.0
LYD3_k127_6573704_4 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000001433 61.0
LYD3_k127_6575003_0 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 413.0
LYD3_k127_6575003_1 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000001941 223.0
LYD3_k127_6575003_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.0001032 45.0
LYD3_k127_6578515_0 UvrD-like helicase C-terminal domain K03656,K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 607.0
LYD3_k127_6578515_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007105 333.0
LYD3_k127_6578515_2 Aminoacyl-tRNA editing domain K19055 - - 0.000000000000000000000000000000000000000000000000005524 186.0
LYD3_k127_6578515_3 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000002754 133.0
LYD3_k127_6578515_4 Domain of unknown function (DUF4203) - - - 0.00000000000000000000000004851 113.0
LYD3_k127_6578515_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.0000000000000542 81.0
LYD3_k127_6578515_6 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000126 56.0
LYD3_k127_6597216_0 Major Facilitator Superfamily K08223 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 490.0
LYD3_k127_6597216_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 370.0
LYD3_k127_6597216_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004249 318.0
LYD3_k127_6597216_3 Dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000001802 228.0
LYD3_k127_6597216_4 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000002308 176.0
LYD3_k127_6597216_5 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000006072 154.0
LYD3_k127_6597216_6 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000000000000001454 135.0
LYD3_k127_6597216_7 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 GO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0017148,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030423,GO:0031047,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032270,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0035194,GO:0040029,GO:0040033,GO:0043170,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045974,GO:0045975,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:2000112,GO:2000113 - 0.000000000000000000004043 94.0
LYD3_k127_6597216_8 Cysteine-rich small domain K07162 - - 0.000000000000000009357 86.0
LYD3_k127_663389_0 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 417.0
LYD3_k127_663389_1 Formyl transferase - - - 0.000000000000000000000000000000003165 139.0
LYD3_k127_663389_2 Polysaccharide deacetylase - - - 0.00000000000005617 83.0
LYD3_k127_6636410_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 389.0
LYD3_k127_6636410_1 Glycosyl hydrolase family 57 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003459 253.0
LYD3_k127_6636410_2 cell cycle K05589,K12065,K13052 - - 0.00000000000001849 77.0
LYD3_k127_6654503_0 Belongs to the helicase family. UvrD subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 495.0
LYD3_k127_6654503_1 Anthranilate synthase component I K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 451.0
LYD3_k127_6654503_2 dUTP biosynthetic process K01494 GO:0003674,GO:0003824,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008829,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000538 258.0
LYD3_k127_6654503_3 PFAM Isochorismatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005369 256.0
LYD3_k127_6654503_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000003044 218.0
LYD3_k127_6654503_5 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000002467 162.0
LYD3_k127_6654503_6 carbon dioxide binding K04653 - - 0.00000000000000004121 86.0
LYD3_k127_6654503_7 PFAM Tetratricopeptide repeat - - - 0.000002233 57.0
LYD3_k127_6655519_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 586.0
LYD3_k127_6655519_1 Vitamin K epoxide reductase family - - - 0.000000000000000000000000000000000000000000000000000000005167 208.0
LYD3_k127_6655519_2 Protein of unknown function (DUF4019) - - - 0.00000000000000000000000000000000000211 147.0
LYD3_k127_6661532_0 Belongs to the peptidase S16 family K01338,K04076 - 3.4.21.53 5.752e-316 983.0
LYD3_k127_6661532_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000003982 179.0
LYD3_k127_685936_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009357 419.0
LYD3_k127_685936_1 NHL repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001317 282.0
LYD3_k127_685936_2 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000003282 235.0
LYD3_k127_685936_3 denitrification pathway - - - 0.00000000000000000000000000006779 122.0
LYD3_k127_685936_4 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000009855 57.0
LYD3_k127_691331_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 334.0
LYD3_k127_691331_1 Iron/manganese superoxide dismutases, C-terminal domain K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 289.0
LYD3_k127_691331_2 PFAM Rubrerythrin - - - 0.000000001918 64.0
LYD3_k127_696828_0 PFAM natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 524.0
LYD3_k127_696828_1 MgtE intracellular N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 383.0
LYD3_k127_696828_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001461 250.0
LYD3_k127_696828_3 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000001174 220.0
LYD3_k127_699247_0 TIGRFAM ribonuclease, Rne Rng family K08300,K08301 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 594.0
LYD3_k127_699247_1 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001496 276.0
LYD3_k127_699247_2 Protein conserved in bacteria - - - 0.000000003032 63.0
LYD3_k127_701861_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003153 259.0
LYD3_k127_70437_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 4.92e-263 830.0
LYD3_k127_70437_1 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 374.0
LYD3_k127_70437_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000001534 143.0
LYD3_k127_70437_5 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000127 63.0
LYD3_k127_708682_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1157.0
LYD3_k127_708682_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 376.0
LYD3_k127_708682_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 288.0
LYD3_k127_714639_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 6.909e-271 841.0
LYD3_k127_714639_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 471.0
LYD3_k127_714639_2 2Fe-2S iron-sulfur cluster binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009274 413.0
LYD3_k127_714639_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 331.0
LYD3_k127_714639_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 325.0
LYD3_k127_714639_5 OsmC-like protein K04063 - - 0.00000000000000000000000000000000000000000000000001608 184.0
LYD3_k127_714639_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000005274 133.0
LYD3_k127_714639_7 Universal stress protein family - - - 0.00000000000001462 85.0
LYD3_k127_724847_0 Protein involved in outer membrane biogenesis - - - 6.859e-289 926.0
LYD3_k127_724847_1 Protein of unknown function (DUF4197) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 292.0
LYD3_k127_724847_2 Large-conductance mechanosensitive channel, MscL K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.000000000000000000000000000000008445 128.0
LYD3_k127_735636_0 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 513.0
LYD3_k127_735636_1 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 395.0
LYD3_k127_735636_2 Transcriptional regulatory protein, C terminal K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009268 287.0
LYD3_k127_735636_3 Protein of unknown function DUF47 K02039,K07220 - - 0.00000000000000000000000000000000000000000000000006973 184.0
LYD3_k127_735636_4 Histidine kinase K07636 - 2.7.13.3 0.00000001221 61.0
LYD3_k127_74126_0 glucose sorbosone K00117 - 1.1.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 436.0
LYD3_k127_74126_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 327.0
LYD3_k127_74126_2 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.0000000000000000000000000000000001535 138.0
LYD3_k127_74126_3 Phosphotransferase enzyme family - - - 0.00000000000000000000000005325 111.0
LYD3_k127_74126_4 Protein of unknown function (DUF1264) - - - 0.000000000000003879 82.0
LYD3_k127_74126_5 Histone deacetylase domain K04768 - - 0.000001979 49.0
LYD3_k127_74126_6 - - - - 0.00006941 51.0
LYD3_k127_7593_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000006146 256.0
LYD3_k127_7593_1 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000009535 212.0
LYD3_k127_7593_2 PFAM Amidohydrolase 2 - - - 0.00000000000000000000000000000001057 138.0
LYD3_k127_7656_0 PFAM Radical SAM - - - 1.439e-212 671.0
LYD3_k127_7656_1 Histone deacetylase domain K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 405.0
LYD3_k127_7656_2 gas vesicle protein - - - 0.0000000000000000001047 93.0
LYD3_k127_768717_0 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 1.469e-194 619.0
LYD3_k127_768717_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 582.0
LYD3_k127_780023_0 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 587.0
LYD3_k127_780023_1 Domains REC, PAS, PAS, PP2C K07315 - 3.1.3.3 0.000001835 49.0
LYD3_k127_780023_2 It is involved in the biological process described with protein phosphorylation K12567 GO:0003008,GO:0003012,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005859,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007010,GO:0007015,GO:0007498,GO:0007610,GO:0007626,GO:0008092,GO:0008150,GO:0008152,GO:0008307,GO:0008344,GO:0009636,GO:0009653,GO:0009888,GO:0009987,GO:0010638,GO:0010720,GO:0010927,GO:0015629,GO:0016043,GO:0016301,GO:0016310,GO:0016459,GO:0016460,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022603,GO:0022607,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0030534,GO:0031032,GO:0031033,GO:0031034,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0032502,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034622,GO:0035094,GO:0035095,GO:0036211,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042692,GO:0042805,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0043412,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0044877,GO:0045214,GO:0045595,GO:0045597,GO:0045933,GO:0045989,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051239,GO:0051240,GO:0051302,GO:0051371,GO:0051393,GO:0051493,GO:0051495,GO:0051782,GO:0055001,GO:0055002,GO:0060284,GO:0060297,GO:0060298,GO:0061061,GO:0065003,GO:0065007,GO:0070925,GO:0071688,GO:0071689,GO:0071704,GO:0071840,GO:0090257,GO:0097435,GO:0097493,GO:0099080,GO:0099081,GO:0099512,GO:0110020,GO:0140096,GO:1901564,GO:1902115,GO:1902117,GO:1902903,GO:1902905 2.7.11.1 0.0007921 51.0
LYD3_k127_799924_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 510.0
LYD3_k127_799924_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009841 287.0
LYD3_k127_799924_2 PFAM Fatty acid hydroxylase - - - 0.00000000000000000000000000000000000000000006932 166.0
LYD3_k127_81117_0 PFAM Acetyl-CoA hydrolase transferase K18122 - - 1.621e-291 905.0
LYD3_k127_81117_1 THUMP K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007595 457.0
LYD3_k127_81117_10 response regulator, receiver - - - 0.00000004613 63.0
LYD3_k127_81117_2 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 303.0
LYD3_k127_81117_3 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002915 286.0
LYD3_k127_81117_4 Oligopeptidase F K08602 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001312 274.0
LYD3_k127_81117_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000226 247.0
LYD3_k127_81117_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000003471 233.0
LYD3_k127_81117_7 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000001292 215.0
LYD3_k127_81117_8 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000008492 100.0
LYD3_k127_81117_9 Protein of unknown function (DUF1189) - - - 0.000000000000000000001049 105.0
LYD3_k127_819188_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 469.0
LYD3_k127_819188_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003984 464.0
LYD3_k127_819188_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000915 286.0
LYD3_k127_819188_3 O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000002465 170.0
LYD3_k127_819188_4 DSBA-like thioredoxin domain - - - 0.00000000000000000000000001645 111.0
LYD3_k127_822630_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 524.0
LYD3_k127_822630_1 protein kinase activity - - - 0.000000000000000000000000001202 121.0
LYD3_k127_822630_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000001634 57.0
LYD3_k127_826398_0 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000001147 271.0
LYD3_k127_826676_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1017.0
LYD3_k127_826676_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 576.0
LYD3_k127_826676_2 Major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 553.0
LYD3_k127_826676_3 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 507.0
LYD3_k127_826676_4 nitrate reductase activity K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 401.0
LYD3_k127_826676_5 pfkB family carbohydrate kinase K00847,K00852 - 2.7.1.15,2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004817 331.0
LYD3_k127_826676_6 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 304.0
LYD3_k127_826676_7 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004861 268.0
LYD3_k127_826676_8 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000001805 108.0
LYD3_k127_826676_9 protein secretion K03116,K03117 - - 0.0000000004979 63.0
LYD3_k127_832257_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 3.65e-276 874.0
LYD3_k127_832257_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 451.0
LYD3_k127_832257_2 PFAM cytochrome c assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 305.0
LYD3_k127_832257_3 cysteine-type peptidase activity K19223 - - 0.000000000000000000000000000000000000000004624 168.0
LYD3_k127_832257_4 - - - - 0.000000000004254 67.0
LYD3_k127_832257_5 Domain of unknown function (DUF4912) K09942 - - 0.0000002817 62.0
LYD3_k127_832257_6 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.00006526 55.0
LYD3_k127_832257_7 peptidyl-prolyl isomerase K07533 - 5.2.1.8 0.0007971 52.0
LYD3_k127_83368_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001339 254.0
LYD3_k127_83368_1 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000311 219.0
LYD3_k127_83368_2 Chromate resistance exported protein - - - 0.000000000000000000000000000000000000000000000007939 173.0
LYD3_k127_83368_3 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.000000000000000000000000000000000000000000006596 169.0
LYD3_k127_83368_4 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000002332 154.0
LYD3_k127_83368_5 Chromate resistance exported protein - - - 0.000000002312 59.0
LYD3_k127_83368_6 Major Facilitator Superfamily - - - 0.0004424 45.0
LYD3_k127_836603_0 Virulence factor BrkB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 304.0
LYD3_k127_836603_1 retrograde transport, endosome to Golgi K07095 - - 0.00000000000000000000000000000000000000000000000000006614 190.0
LYD3_k127_836603_2 Peptidase MA superfamily - - - 0.0000000000000000000000000000000000000000000000002094 192.0
LYD3_k127_836603_3 Transcriptional regulator, LysR - - - 0.000000000001069 73.0
LYD3_k127_836603_4 Protein of unknown function (DUF1059) - - - 0.000000006154 58.0
LYD3_k127_842820_0 - K07112 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000008894 207.0
LYD3_k127_842820_1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000007025 64.0
LYD3_k127_84940_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 1.115e-296 918.0
LYD3_k127_84940_1 ACT domain K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000009538 259.0
LYD3_k127_84940_2 NosL - - - 0.00000000000000000000000000000003071 131.0
LYD3_k127_849708_0 Telomere recombination K04656 - - 3.172e-246 785.0
LYD3_k127_849708_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 591.0
LYD3_k127_849708_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 488.0
LYD3_k127_849708_3 Hydrogenase formation hypA family K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 450.0
LYD3_k127_849708_4 AIR synthase related protein, N-terminal domain K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 396.0
LYD3_k127_849708_5 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 321.0
LYD3_k127_849708_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000249 192.0
LYD3_k127_849708_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000004414 114.0
LYD3_k127_849708_8 - - - - 0.00000000000000004439 86.0
LYD3_k127_850843_0 Aminotransferase class I and II K14261 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 489.0
LYD3_k127_850843_1 Probable molybdopterin binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 410.0
LYD3_k127_850843_2 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009741 402.0
LYD3_k127_850843_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 329.0
LYD3_k127_850843_4 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 330.0
LYD3_k127_850843_5 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003477 251.0
LYD3_k127_850843_6 Protein of unknown function DUF116 K09729 - - 0.000000000000000000000000000000000000000000000000000000000000001041 222.0
LYD3_k127_850843_7 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000009958 213.0
LYD3_k127_850843_8 Nitroreductase family - - - 0.000000000000000000000000000000006757 136.0
LYD3_k127_850843_9 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000000007511 120.0
LYD3_k127_852181_0 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007324 449.0
LYD3_k127_852181_1 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 445.0
LYD3_k127_852181_2 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 345.0
LYD3_k127_852181_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002829 278.0
LYD3_k127_852181_4 PFAM oxidoreductase domain protein K09949 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004946 274.0
LYD3_k127_852181_5 heat shock protein binding K03686 - - 0.0000000002635 73.0
LYD3_k127_856661_0 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 360.0
LYD3_k127_856661_2 PFAM transglutaminase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009427 261.0
LYD3_k127_856661_3 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000001036 199.0
LYD3_k127_856661_4 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000001767 154.0
LYD3_k127_856661_5 - - - - 0.000000000000000000000000000004675 124.0
LYD3_k127_856661_6 Domain of unknown function (DUF4382) - - - 0.0000000000000000001163 94.0
LYD3_k127_856661_7 Domain of unknown function (DUF4382) - - - 0.00004733 48.0
LYD3_k127_856992_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 482.0
LYD3_k127_856992_1 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000008699 154.0
LYD3_k127_856992_2 Protein involved in outer membrane biogenesis - - - 0.0000000000000000000000000000001068 129.0
LYD3_k127_856992_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000001378 114.0
LYD3_k127_856992_4 Major facilitator - - - 0.00000000001729 66.0
LYD3_k127_8578_0 [glutamate-ammonia-ligase] adenylyltransferase activity K00982 GO:0000166,GO:0000287,GO:0000820,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006521,GO:0006541,GO:0006542,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008882,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0010565,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019222,GO:0019752,GO:0030554,GO:0031323,GO:0032553,GO:0032555,GO:0032559,GO:0033238,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0050789,GO:0050794,GO:0051171,GO:0062012,GO:0065007,GO:0070566,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008039 541.0
LYD3_k127_8578_1 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000001446 254.0
LYD3_k127_8578_2 Sulfatase - - - 0.00000000000000000000000000000002482 138.0
LYD3_k127_8578_3 4Fe-4S binding domain - - - 0.000000000000001234 78.0
LYD3_k127_8578_4 Cupin domain - - - 0.000000004584 62.0
LYD3_k127_876852_0 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 312.0
LYD3_k127_876852_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.000000000000000000000000000000000000000007262 158.0
LYD3_k127_876852_2 cyclic nucleotide binding K10914 - - 0.00000000000000000000000000000000000002634 151.0
LYD3_k127_887947_0 serine threonine protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001439 273.0
LYD3_k127_887947_2 PFAM Lytic transglycosylase catalytic - - - 0.0000000001614 70.0
LYD3_k127_90505_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 5.592e-228 723.0
LYD3_k127_908694_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006374 359.0
LYD3_k127_908694_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 319.0
LYD3_k127_908694_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 311.0
LYD3_k127_908694_3 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 296.0
LYD3_k127_908694_4 PFAM Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000003204 187.0
LYD3_k127_908694_5 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000001391 179.0
LYD3_k127_908694_6 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000001026 146.0
LYD3_k127_929432_0 Metallo-beta-lactamase superfamily K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000002602 235.0
LYD3_k127_929432_1 PFAM PBS lyase HEAT-like repeat - - - 0.0000000000000000001931 94.0
LYD3_k127_929432_2 OsmC-like protein - - - 0.00000000000000002448 89.0
LYD3_k127_929432_3 Arylsulfotransferase (ASST) - - - 0.00000000000002944 85.0
LYD3_k127_929432_4 Protein of unknown function (DUF2934) - - - 0.00000008366 57.0
LYD3_k127_94469_0 PFAM type II secretion system protein G K02456 - - 0.00000000000000000000000000000000000000000000000000526 184.0
LYD3_k127_94469_1 Sigma-54 interaction domain K06714 - - 0.000000000000000000000000000000000005319 140.0
LYD3_k127_948278_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006689 516.0
LYD3_k127_948278_1 Aconitase C-terminal domain K01681 - 4.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 404.0
LYD3_k127_956436_0 Male sterility protein K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002006 273.0
LYD3_k127_956436_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000003716 226.0
LYD3_k127_956436_2 DUF218 domain - - - 0.0000000000000007998 85.0
LYD3_k127_958600_0 PFAM Type II secretion system protein E K02454 - - 7.101e-199 631.0
LYD3_k127_958600_1 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006219 529.0
LYD3_k127_958600_2 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 301.0
LYD3_k127_958600_3 protein transport across the cell outer membrane K02452,K02463 - - 0.0000000000000000000000000000000000001354 152.0
LYD3_k127_958600_4 TIGRFAM decaheme c-type cytochrome, OmcA MtrC family - - - 0.00000000000000000000000000001119 123.0
LYD3_k127_962913_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 7.04e-283 881.0
LYD3_k127_962913_1 COGs COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 482.0
LYD3_k127_962913_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000981 183.0
LYD3_k127_962913_3 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000004032 87.0
LYD3_k127_962913_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000009143 80.0
LYD3_k127_962913_5 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.0000000000004346 71.0
LYD3_k127_962913_6 periplasmic or secreted lipoprotein - - - 0.00000002358 58.0
LYD3_k127_962913_7 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.0000001912 53.0
LYD3_k127_969275_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 528.0
LYD3_k127_969275_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 449.0
LYD3_k127_969275_10 PAS domain containing protein K03406,K13924,K14986 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000003768 124.0
LYD3_k127_969275_12 amino acid - GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.000001674 49.0
LYD3_k127_969275_2 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 309.0
LYD3_k127_969275_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001438 267.0
LYD3_k127_969275_4 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000002195 253.0
LYD3_k127_969275_5 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000000000000000009467 224.0
LYD3_k127_969275_6 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000002278 221.0
LYD3_k127_969275_7 VanZ like family - - - 0.0000000000000000000000000000000000000001548 155.0
LYD3_k127_969275_8 Sigma factor PP2C-like phosphatases - - - 0.0000000000000000000000000000000000005959 155.0
LYD3_k127_969275_9 diguanylate cyclase - - - 0.00000000000000000000000000000001121 146.0
LYD3_k127_972525_0 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 566.0
LYD3_k127_972525_1 Type II secretion system (T2SS), protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000001103 201.0
LYD3_k127_972525_2 Glycosyltransferase, group 2 family protein K12992 - - 0.00000000000001265 78.0
LYD3_k127_974130_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 9.224e-238 748.0
LYD3_k127_974130_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000004285 65.0